Foldalign: RNA Structure and Sequence Alignment

Results

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This page can be accessed at
https://rth.dk/resources/foldalign/suite/11121258231468844163


Your submission

You have invoked the following options
Comparison_type: global
Delta: 25
Gap_elongation_cost: -55
Gap_opening_cost: -110
Id:
Lambda: 200
Maximum_number_of_structures: 5
email:
with the following data: data.dat


Your results

Alignment of V00158/694-623 against AC069454/82192-82263

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Download the results: foldalign.11121258231468844163.tar.gz
ID:

Score = 400. NS score = 475. Alignment length = 74
Identity = 0.34 ( 25 / 74 ). Number of base-pairs = 16

SequenceStartEnd
V00158/694-623172
AC069454/82192-82263172

V00158/694-62      1 GCAGAU-GUA GCUCAGUGGU AGAGCGCAAC CUUGCCAAGG
Structure            ((((((<(.. .......... ......(((( (.......))
AC069454/8219      1 GGUCCCAUGG UGUAAUGGUU AGCACUCUGG ACUUUGAAUC

V00158/694-62 40 UUGAUGCCAU GGGUUCGAGU CCCAUU-AUC UGCU Structure ))).....<( (((....... ))))>)>))) ))). AC069454/8219 41 CAGCGAUC-C GAGUUCAAAU CUCG-GUGGG ACCU



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