Foldalign: RNA Structure and Sequence Alignment

Results

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https://rth.dk/resources/foldalign/suite/1112125610480743414


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Comparison_type: local
Delta: 25
Gap_elongation_cost: -55
Gap_opening_cost: -110
Id:
Lambda: 1000
Maximum_number_of_structures: 5
email:
with the following data: data.dat


Your results

Alignment of V00158_694-623 against AC069454_82192-82263

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Download the results: foldalign.1112125610480743414.tar.gz
ID:

Score = 1188. NS score = 1411. Alignment length = 234
Identity = 0.40 ( 93 / 234 ). Number of base-pairs = 57

SequenceStartEnd
V00158_694-62356282
AC069454_82192-82263174404

V00158_694-62     56 GUCGUCGGUU CGAAUCCGAC AAAAGGCUUG UGUGCAGAUG
Structure            ((((((.... .))...)))) ((..(((... ...((.....
AC069454_8219    174 GCCGCCCGUG GGGCCCCGGU CCAGGGCCCA GUCCCUCAAA

V00158_694-62 96 UA-GCUCAGU GGUAGAGCGC AACCUUGCCA AGGUUGAUGC Structure ...))..... (((((.(((( (((....... ..)))).))) AC069454_8219 214 CACGGACACC GCUGCCGCUC UGGAAAGGCC GCCCAG-AGC
V00158_694-62 135 CAUGGGUUCG AGUCC-CA-- -UUAUCUGCU UAUAGAUUUU Structure ..((((.... ...)).)).. .))))).))) ....(((((. AC069454_8219 253 CCUCCUAGCU UGAGGAGACU CGCGGCCGCC UUAAGAAGCC
V00158_694-62 171 AG--GGCGGA GUAGAGCAGU CAGGUAGCUC GCAGGGCUCA Structure ....(((((( (..((((... ......)))) .(((((.... AC069454_8219 293 AGCAGGUCCC AUGGUGUAAU -GGUUAGCAC UCUGGACUUU
V00158_694-62 209 UAAUCCUGAA GUCAGAGGUU CAAAUCCUUU CUCCGCUACA Structure ...))))).. ...(((((.. .....))))) )))))))... AC069454_8219 332 GAAUCCAGCG AU-CCGAGUU CAAAUCUCGG UGGGACCUCA
V00158_694-62 249 UCAAUUUUUG CAUAUUUCAA AUAAAUAAAU UUUA Structure ...((..... ...))..... ......)))) ))). AC069454_8219 371 CGAGACUUUU UGGUCCUACA AUUCCUGUUU UGGA



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