Foldalign: RNA Structure and Sequence Alignment

Results

Your home

This page can be accessed at
https://rth.dk/resources/foldalign/suite/111115161517953115468


Your submission

You have invoked the following options
Comparison_type: scan
Delta: 25
Gap_elongation_cost: -55
Gap_opening_cost: -110
Id: Motif in long sequences
Lambda: 1000
Maximum_number_of_structures: 5
email:
with the following data: data.dat


Your results

Alignment of AE014152.1/30424-30520 against AE016809.1/202496-202595

Download the results: foldalign.111115161517953115468.tar.gz
This page will expire after 96 hours from 2015-11-11 23:13:15.163797825 (+0100)
ID: Motif in long sequences

Download pdf file of the p-value plot: foldalign.111115161517953115468.pdf
Download the main FOLDALIGN output file: foldalign.111115161517953115468.col.gz
Download the list of foldalignments: foldalign.111115161517953115468.hitlist

NameStartEndNameStartEndScoreP-ScoreRank
AE014152.1/30424-3052029783940 AE016809.1/202496-20259552556241 5394 0.000 1
AE014152.1/30424-3052070207367 AE016809.1/202496-20259512371587 913 0.000 2
AE014152.1/30424-3052056476367 AE016809.1/202496-20259554266141 829 0.001 3
AE014152.1/30424-3052080888422 AE016809.1/202496-20259573547690 716 0.008 4
AE014152.1/30424-3052032203660 AE016809.1/202496-20259573417778 682 0.018 5
AE014152.1/30424-3052061184 AE016809.1/202496-20259512481371 634 0.055 6
AE014152.1/30424-3052012681589 AE016809.1/202496-20259573197640 630 0.060 7
AE014152.1/30424-3052056546031 AE016809.1/202496-20259574857863 622 0.071 8
AE014152.1/30424-3052016082322 AE016809.1/202496-20259555626278 613 0.087 9
AE014152.1/30424-3052032063916 AE016809.1/202496-20259534824192 591 0.141 10
AE014152.1/30424-3052027762890 AE016809.1/202496-20259592039317 555 0.296 11
AE014152.1/30424-3052028043283 AE016809.1/202496-20259518482334 544 0.364 12
AE014152.1/30424-3052011731814 AE016809.1/202496-20259587039343 524 0.513 13
AE014152.1/30424-3052053375723 AE016809.1/202496-202595411789 520 0.546 14
AE014152.1/30424-3052081228571 AE016809.1/202496-20259511751618 494 0.764 15
AE014152.1/30424-3052075937832 AE016809.1/202496-20259560926324 488 0.810 16
AE014152.1/30424-3052021422523 AE016809.1/202496-20259550485433 487 0.817 17
AE014152.1/30424-3052016491917 AE016809.1/202496-20259574137682 483 0.845 18
AE014152.1/30424-3052040364157 AE016809.1/202496-202595319442 482 0.852 19
AE014152.1/30424-3052050225382 AE016809.1/202496-20259545401 481 0.858 20
AE014152.1/30424-3052036453864 AE016809.1/202496-20259544494662 480 0.865 21
AE014152.1/30424-3052033853604 AE016809.1/202496-20259544494662 480 0.865 22
AE014152.1/30424-3052024932859 AE016809.1/202496-20259558676224 477 0.883 23
AE014152.1/30424-3052024532599 AE016809.1/202496-20259572967444 472 0.910 24
AE014152.1/30424-30520544842 AE016809.1/202496-20259572777581 468 0.929 25
AE014152.1/30424-3052039824313 AE016809.1/202496-20259559526285 463 0.948 26
AE014152.1/30424-3052062696585 AE016809.1/202496-20259592889592 461 0.955 27
AE014152.1/30424-3052013091586 AE016809.1/202496-202595293568 460 0.958 28
AE014152.1/30424-3052064266711 AE016809.1/202496-2025959001182 455 0.972 29
AE014152.1/30424-3052056575827 AE016809.1/202496-20259541224296 450 0.982 30
AE014152.1/30424-3052038424122 AE016809.1/202496-20259573797654 449 0.983 31
AE014152.1/30424-30520372447 AE016809.1/202496-20259527952870 446 0.988 32
AE014152.1/30424-3052035283881 AE016809.1/202496-202595302648 442 0.992 33
AE014152.1/30424-3052083308776 AE016809.1/202496-20259558586303 442 0.992 34
AE014152.1/30424-3052024782589 AE016809.1/202496-20259566726783 439 0.994 35
AE014152.1/30424-3052078968132 AE016809.1/202496-20259546424875 439 0.994 36
AE014152.1/30424-3052077737965 AE016809.1/202496-202595344538 439 0.994 37
AE014152.1/30424-3052024952654 AE016809.1/202496-2025958391000 438 0.995 38
AE014152.1/30424-3052016831797 AE016809.1/202496-20259524142526 437 0.996 39
AE014152.1/30424-3052049415122 AE016809.1/202496-20259573277510 436 0.996 40
AE014152.1/30424-3052014911855 AE016809.1/202496-20259536213982 434 0.997 41
AE014152.1/30424-3052039734366 AE016809.1/202496-20259555295928 434 0.997 42
AE014152.1/30424-3052028242851 AE016809.1/202496-202595530557 432 0.998 43
AE014152.1/30424-3052056335741 AE016809.1/202496-20259586078714 432 0.998 44
AE014152.1/30424-3052056855744 AE016809.1/202496-20259530633122 431 0.998 45
AE014152.1/30424-3052026742859 AE016809.1/202496-20259576397825 430 0.998 46
AE014152.1/30424-3052036133868 AE016809.1/202496-20259568887147 425 0.999 47
AE014152.1/30424-3052033533608 AE016809.1/202496-20259568887147 425 0.999 48
AE014152.1/30424-3052071787543 AE016809.1/202496-20259572817648 425 0.999 49
AE014152.1/30424-30520711820 AE016809.1/202496-20259524042513 419 1.000 50
AE014152.1/30424-3052029473098 AE016809.1/202496-20259513571506 418 1.000 51
AE014152.1/30424-3052084068829 AE016809.1/202496-20259531433573 417 1.000 52
AE014152.1/30424-3052061176404 AE016809.1/202496-20259539954288 415 1.000 53
AE014152.1/30424-3052061616450 AE016809.1/202496-20259573707658 414 1.000 54
AE014152.1/30424-30520725863 AE016809.1/202496-202595326466 413 1.000 55
AE014152.1/30424-3052049785164 AE016809.1/202496-20259576367823 409 1.000 56
AE014152.1/30424-3052056595729 AE016809.1/202496-20259516281698 409 1.000 57
AE014152.1/30424-3052067756836 AE016809.1/202496-2025952282 408 1.000 58
AE014152.1/30424-3052032283590 AE016809.1/202496-20259584428797 407 1.000 59
AE014152.1/30424-3052079828178 AE016809.1/202496-20259585288723 407 1.000 60
AE014152.1/30424-3052033733842 AE016809.1/202496-20259516122079 402 1.000 61
AE014152.1/30424-3052024982837 AE016809.1/202496-20259555275857 399 1.000 62
AE014152.1/30424-30520157512 AE016809.1/202496-20259573707727 398 1.000 63
AE014152.1/30424-3052016661974 AE016809.1/202496-20259545374842 396 1.000 64
AE014152.1/30424-3052036333843 AE016809.1/202496-20259586218835 396 1.000 65
AE014152.1/30424-3052032103531 AE016809.1/202496-20259524022722 396 1.000 66
AE014152.1/30424-3052069257292 AE016809.1/202496-20259521852556 396 1.000 67
AE014152.1/30424-3052013361812 AE016809.1/202496-20259513381819 395 1.000 68
AE014152.1/30424-3052061546332 AE016809.1/202496-20259536383819 394 1.000 69
AE014152.1/30424-3052014771583 AE016809.1/202496-20259594019511 393 1.000 70
AE014152.1/30424-3052013861558 AE016809.1/202496-20259569037070 393 1.000 71
AE014152.1/30424-30520847954 AE016809.1/202496-20259545574663 391 1.000 72
AE014152.1/30424-3052042174669 AE016809.1/202496-20259573307786 391 1.000 73
AE014152.1/30424-3052045294670 AE016809.1/202496-20259564006544 389 1.000 74
AE014152.1/30424-3052049525057 AE016809.1/202496-20259517371844 389 1.000 75
AE014152.1/30424-3052061806515 AE016809.1/202496-20259512831609 389 1.000 76
AE014152.1/30424-3052078728178 AE016809.1/202496-20259534823792 389 1.000 77
AE014152.1/30424-3052012941551 AE016809.1/202496-20259528663120 387 1.000 78
AE014152.1/30424-3052026462864 AE016809.1/202496-20259536493864 387 1.000 79
AE014152.1/30424-3052063696539 AE016809.1/202496-20259560386208 387 1.000 80
AE014152.1/30424-3052063696539 AE016809.1/202496-20259558316001 387 1.000 81
AE014152.1/30424-3052063696539 AE016809.1/202496-20259556245794 387 1.000 82
AE014152.1/30424-3052030813355 AE016809.1/202496-20259528463123 386 1.000 83
AE014152.1/30424-3052078547948 AE016809.1/202496-20259519472039 386 1.000 84
AE014152.1/30424-3052024842635 AE016809.1/202496-20259531703320 385 1.000 85
AE014152.1/30424-3052089339014 AE016809.1/202496-20259562076286 385 1.000 86
AE014152.1/30424-3052014441572 AE016809.1/202496-20259585728699 384 1.000 87
AE014152.1/30424-3052042194374 AE016809.1/202496-20259519182074 384 1.000 88
AE014152.1/30424-3052053345429 AE016809.1/202496-20259526922789 384 1.000 89
AE014152.1/30424-3052078777955 AE016809.1/202496-20259517801857 382 1.000 90
AE014152.1/30424-3052017241879 AE016809.1/202496-20259539864144 381 1.000 91
AE014152.1/30424-3052027632874 AE016809.1/202496-20259575087619 381 1.000 92
AE014152.1/30424-3052031153422 AE016809.1/202496-20259512741581 381 1.000 93
AE014152.1/30424-3052062866343 AE016809.1/202496-20259539033960 381 1.000 94
AE014152.1/30424-3052040974173 AE016809.1/202496-20259545654639 379 1.000 95
AE014152.1/30424-3052026562889 AE016809.1/202496-20259587899020 378 1.000 96
AE014152.1/30424-30520404944 AE016809.1/202496-20259554135951 377 1.000 97
AE014152.1/30424-3052017191776 AE016809.1/202496-20259551108 377 1.000 98
AE014152.1/30424-3052056905738 AE016809.1/202496-20259517921840 377 1.000 99
AE014152.1/30424-3052067727020 AE016809.1/202496-20259573647610 377 1.000 100

Hit rank 1
Download structure in col format: struct.1.col
Score = 5300 NS score = 4650 P-value = 0.000
Alignment length = 770 Identity = 0.42 ( 322 / 770 ) Number of base-pairs = 231
SequenceStartEnd
AE014152.1/30424-3052029783940
AE016809.1/202496-20259552556241
AE014152.1/30   3116 UCUUAUGUUG UUCGUCGCUG CUAGUAUUAC UAGCAUUUUC
Structure            ((.((.(((. (((((.((.( ((((.....) )))).....(
AE016809.1/20   5398 CC-AAUUAUA GGAGA-UUAG GGGAGUCUAU CUUCAUGACU

AE014152.1/30 3156 AAAGUACCUU AUACUAUUAU GAGCUUACUA GCUGCUUUAU Structure ((((((.... ........(( ((((...... ...))).))) AE016809.1/20 5436 UCAGGAGCCU AGGCU-UAGU AGUCU--CU- -CUGACAUGC
AE014152.1/30 3196 AUAUCUACUC UGAUCUACUU AGUUAUUGGU ACGCAUGCGU Structure ..(((..... .))).))))) ......)))) )))...((.. AE016809.1/20 5471 AUAUCUUUUU AGAUAUCUUG A-UGAUGAAG UCUAUUGGAU
AE014152.1/30 3236 GAAGUAAAAA GCUUAUACUU AUUUAUGCUG UGAAUUGGCG Structure ...))))..) )).))..... .(((..(((. ......)))( AE016809.1/20 5510 ACCCUCUGCA UGCUUCAUAU AAUCCUAAUG -AUAUGGUUU
AE014152.1/30 3276 CAGCGUCUCU ACAAGACACC UUA-AUGUCU AACAAUAAGU Structure ((((...... ...(((((.. .....))))) ...((((((( AE016809.1/20 5549 GGGAGUUUCU ACCAAGAGCC UUAAACUCUU GAUUAUGAAG
AE014152.1/30 3315 AUACUUAUUU AUGCUGUG-- -AAUUGGCGC AGCGUCUCUA Structure (((((((((. ..((((((.. .((((..((( (((....... AE016809.1/20 5589 UGCUUCAUAU AAUCCUAAUG AUAUGGUUUG GGAGUUUCUA
AE014152.1/30 3352 CAAGACACCU UA-AUGUCUA ACAAUAAGUA UACUUAUUUA Structure ..(((((... ....))))). ..((((((.. ..)))))).. AE016809.1/20 5629 CCAAGAGCCU UAAACUCUUG AUUAUGAAGU GCUUCAUAUA
AE014152.1/30 3391 UGCUGUG--- AAUUGGCGCA GCGUCUCUAC AAGACACCUU Structure .))))))... ))))..)))) ))((....)) .(((((.... AE016809.1/20 5669 AUCCUAAUGA UAUGGUUUGG GAGUUUCUAC CAAGAGCCUU
AE014152.1/30 3428 A-AUGUCUAA CAAUAAGUAU ACUUAUUUAU GCUGU--GAA Structure ...))))).. .))))))))) )))))))... )))))..))) AE016809.1/20 5709 AAACUCUUGA UUAUGAAGUG CUUCAUAUAA UCCUAAUGAU
AE014152.1/30 3465 UUGG-CGCAG CGUCUCUACA AGACACCUUA -AUGUCUAAC Structure ..)).((((( (......... (((((..... ..)))))... AE016809.1/20 5749 AUGGUUUGGG AGUUUCUACC AAGAGCCUUA AACUCUUGAU
AE014152.1/30 3503 AAUAAGUAUA CUUAUUUAUG CUGUG---AA UUGGCGCAGC Structure (((((((((( ((((((...( (((((...(( ((..(((((( AE016809.1/20 5789 UAUGAAGUGC UUCAUAUAAU CCUAAUGAUA UGGUUUGGGA
AE014152.1/30 3540 GUCUCUACAA GACACCUUA- AUGUCUAACA AUAAGUAUAC Structure .........( ((((...... .)))))...( (((((((((( AE016809.1/20 5829 GUUUCUACCA AGAGCCUUAA ACUCUUGAUU AUGAAGUGCU
AE014152.1/30 3579 UUAUUUAUGC UGUG---AAU UGGCGCAGCG UCUCUACAAG Structure (((((...(( ((((...((( (..((((((. ........(( AE016809.1/20 5869 UCAUAUAAUC CUAAUGAUAU GGUUUGGGAG UUUCUACCAA
AE014152.1/30 3616 ACACCUUA-A UGUCUAACAA UAAGUAUACU UAUUUAUGCU Structure (((....... )))))...(( (((((((((( ((((...((( AE016809.1/20 5909 GAGCCUUAAA CUCUUGAUUA UGAAGUGCUU CAUAUAAUCC
AE014152.1/30 3655 GUGA---AUU GGCGCAGCGU CUCUACAAGA CACCUUA-AU Structure (((....... ..))))))(( ....)).((( ((.......) AE016809.1/20 5949 UAAUGAUAUG GUUUGGGAGU UUCUACCAAG AGCCUUAAAC
AE014152.1/30 3691 GUCUAACAAU AAGUAUACUU AUUUAUGCUG UG---AAUUG Structure ))))...))) )))))))))) )))...)))) ))...)))). AE016809.1/20 5989 UCUUGAUUAU GAAGUGCUUC AUAUAAUCCU AAUGAUAUGG
AE014152.1/30 3728 GCGCAGCGUC UCUACAAGAC ACCUUA-AUG UCUAACAAUA Structure .))))))((. ...)).(((( (.......)) )))...)))) AE016809.1/20 6029 UUUGGGAGUU UCUACCAAGA GCCUUAAACU CUUGAUUAUG
AE014152.1/30 3767 AGUAUACUUA UUUAUGCUGU G---AAUUGG CGCAGCGUCU Structure )))))))))) ))...))))) )...)))).. ))))))((.. AE016809.1/20 6069 AAGUGCUUCA UAUAAUCCUA AUGAUAUGGU UUGGGAGUUU
AE014152.1/30 3804 CUACAAGACA CCUUA-AUGU CUAACAAUAA GUAUACUUAU Structure ..)).((((( .......))) ))...))))) )))))))))) AE016809.1/20 6109 CUACCAAGAG CCUUAAACUC UUGAUUAUGA AGUGCUUCAU
AE014152.1/30 3843 UUAUGCUGUG Structure )...)))))) AE016809.1/20 6149 AUAAUCCUAA

Hit rank 2
Download structure in col format: struct.2.col
Score = 913 NS score = 1484 P-value = 0.000
Alignment length = 355 Identity = 0.41 ( 147 / 355 ) Number of base-pairs = 92

SequenceStartEnd
AE014152.1/30424-3052070207367
AE016809.1/202496-20259512371587
AE014152.1/30   7020 UAGCUAAGUG UACAUAACGA CUAUGCUCCU GCAUUCGUGC
Structure            .((((((((. .((......( ((.(((.((( (....)).((
AE016809.1/20   1237 UAGUUAAUUU UAUAAACUCU GUUCAGUUAA GUAAUCUUUA

AE014152.1/30 7060 -GCUGUUUAA UAGUAUGCUG CAUUAGCUGU ACUACUAUUG Structure .(((...... (((((.((.( (....)).)) ..)))))... AE016809.1/20 1277 UGCCUAUUGG CUGUUGGCAA UACUUAUUGU A-AAUGGAUU
AE014152.1/30 7099 AGCAUGCCGG CUAUUACAUC UGAUUAGACA CAUAACGUUC Structure )))..)).)) ...((...(( (....))).. ......((.. AE016809.1/20 1316 GGCCCUGAUA GUCCUAAGUU UGAAGAAAUA -AUGAUGAUA
AE014152.1/30 7139 ACGCCUUUAA GUUACAGAAA UGCA-AUAUA AACUA-AGCA Structure ((........ )).)).)).. .))).((((( (..((..... AE016809.1/20 1355 UCUGGACUCU GAUUUUAGUU UCUGGACUGA CCUAGUAUCA
AE014152.1/30 7177 CUGUGAUGAA AAACCACGAU CAUAUUAUGU UUUGAGGUGC Structure .((((..... ....)))).. ..)))))))) .....)))(( AE016809.1/20 1395 AUGUUGGUUG AAGGAACAAU UUCUGUUAGU UUAAAGCAGA
AE014152.1/30 7217 GCUAAAUGCU UACAUG--UG CUAAUUUGCU CAUACUACUU Structure ((((((.((. .........) )...)))((. ....(((.(( AE016809.1/20 1435 UCAGCUUUCU UACUAGCUUG AGCAAGUAUU AAU-GGA-CU
AE014152.1/30 7255 GCUAAGCUCU GCAAUAGUAG GUGAACUAAA CGGCUAUUAA Structure ((........ ))))))).(( ((((....(( (((((....) AE016809.1/20 1473 UCUAUGAUCU GGAGUCCUAG UGAGAGUUGU AUCCUGUAAA
AE014152.1/30 7295 GCCCGAAUGU ACU-AGUA-G UAACUUCUUG GCUCAAAUAC Structure )))((....( ((.......) ))......)) .......... AE016809.1/20 1513 GGAUUAAUUA UCUGAAUAUG AUACCUAGAG AUACCUAUGG
AE014152.1/30 7333 UUAGUUGCUU AUCUGCUAGC GUGUAAAAUU UGGCU Structure ...)))..)) )))))).))) ))))...))) ))))) AE016809.1/20 1553 GAAUACUGCU UACUAUUUGA UUAUUCUAAU UGGCU

Hit rank 3
Download structure in col format: struct.3.col
Score = 829 NS score = 2280 P-value = 0.001
Alignment length = 728 Identity = 0.39 ( 281 / 728 ) Number of base-pairs = 191

SequenceStartEnd
AE014152.1/30424-3052056476367
AE016809.1/202496-20259554266141
AE014152.1/30   5647 CGUAAAUACC GCUAGCAUGU CUGCUUACUU GCAUUGCUGU
Structure            (((((((... ((.((((... .(((...... ))).))))))
AE016809.1/20   5426 CUUCAUGACU UCAGGAGCCU AGGCUUAGUA GUCUCUCUGA

AE014152.1/30 5687 AUAAGCUACA AGAGCAUUAU CCUUCAUAUU GGAUAAUACU Structure ((((((.... .....((((. ((........ )).))))... AE016809.1/20 5466 CAUGCAUAUC UUUUUAGAUA UCUUGAUGAU GAAGUCUAUU
AE014152.1/30 5727 GCUUAGUAGC UACUGCUACC UUACGUUCUG CUAUAAUU-U Structure ((......)) ....)))((. ....)).... .))).))).( AE016809.1/20 5506 GGAUACCCUC UGCAUGCUUC AUAUAAUCCU AAUGAUAUGG
AE014152.1/30 5766 UACGUGGACC UAUGCUUCUU G--UUGAUCA AUUUACGAUG Structure ((((((.... ))))..(((( (.......)) )......((( AE016809.1/20 5546 UUUGGGAGUU UCUACCAAGA GCCUUAAACU CUUGAUUAUG
AE014152.1/30 5804 CAUAUAGACU UAUACAGUUU UGCUGAGCAU GACACUUCAU Structure (((.(((((( (((..(((.( (......... )).)))(((. AE016809.1/20 5586 AAGUGCUUCA UAUAAUCCUA AUGAUAUGGU UUGGGAGUUU
AE014152.1/30 5844 UUAGACAACA CUUUCAAAUA UUCUCCUUUG UGUUAUGACU Structure .....((((. ...((((((( ..(((.(((( .((((....) AE016809.1/20 5626 CUA-CCAAGA GCCUUAAACU --CUUGAUUA -UGAAGUGCU
AE014152.1/30 5884 AACUGCAAGC GUACGACGUU ACUGUUCGGG CUAUUUGCAC Structure )))..))))( (((......) ).))...))) .))))(((.. AE016809.1/20 5662 UCAUAUAAUC CUA--AUGAU AUGGUUUGGG -AGUUUCUAC
AE014152.1/30 5924 UAUGCAAAAU UGAAAAGUUG ACUACUAUGU GCAAGUCCUA Structure ...))).... )))...)))) ..(((((((. ((.(((..(( AE016809.1/20 5699 CA-AGAGCCU UAAACUCUUG AUUAUGAAGU GCUUCAUAUA
AE014152.1/30 5964 UAUGUCUACA UUAAAGUAUC UAUGUACAAA GCAAUGAUAU Structure .(((..(((. .....))).. .(((((((.. ....)).... AE016809.1/20 5738 -AUCCUAAUG AUAUGGUUUG GGAGUUUCUA CCAAGAGCCU
AE014152.1/30 6004 AGUAUAUUGC GUUAACUAAG CUUAGUGGUG GAGAACUUGG Structure ..)))))..) )))))))..) ).)).))))) .......))) AE016809.1/20 5777 UAAACUCUUG AUUAUGA-AG UGCU-UCAUA UAAUCCUAAU
AE014152.1/30 6044 AAUAAAACUA GUACUGUUGU AAUACUACAA UGGCUAUAAU Structure .))))..... )).)))..(( ......)).) ))(((((... AE016809.1/20 5815 GAUAUGGUUU GGGAGUUUCU ACCAAGAGCC UUAAACUCUU
AE014152.1/30 6084 AAAUGCAUAC UUAGCUGC-U CAAACUGCAU UGACAAUUGC Structure ....((.... .((((((... ((((..((.( ((.....((( AE016809.1/20 5855 GAUUAUGAAG UGCUUCAUAU AAUCCUAAUG AUAUGGUUUG
AE014152.1/30 6123 UGAAGUUCAA GCUUAUGCGA UUGACUCUC- -UCUUAACGC Structure (((.(((((. .....))... ..((...... .))..)))(( AE016809.1/20 5895 GGAGUUUCUA CCAAGAGCCU UAAACUCUUG AUUAUGAAGU
AE014152.1/30 6161 ACUCUGUAAU GUCAGUAUUA GCAACGAAAU CUA-UACUAA Structure .....))... .))))))... ....))).(( (((.(((... AE016809.1/20 5935 GCUUCAUAUA AUCCUAAUGA UAUGGUUUGG GAGUUUCUAC
AE014152.1/30 6200 CAUGUACUAG CUAGAUGCUU UGUCGGCGAU GCUUAGAUAA Structure ...))).))) ....)))))) )).))))..) )..(((.... AE016809.1/20 5975 CAAGAGCCUU AAACUCUUGA UUAUGAAGUG CUUCAUAUAA
AE014152.1/30 6240 UUUCACUACU GUAUAGUGCU UUUGACCACC AUUCAUUGUA Structure .....))).. )))))))((( .........( (((.((.... AE016809.1/20 6015 UCCUAAUGAU AUGGUUUGGG AGUUUCUACC AAG-AGCCUU
AE014152.1/30 6280 GGUAUAAUGC UCGCAACGUG CUCUACGUAA AGCUGCUGCU Structure ...)))))). .((....... .....))... )))......) AE016809.1/20 6054 AAACUCUUGA UUAUGAAGUG CUUCAUAUAA UCCUAAUGAU
AE014152.1/30 6320 AUUACGUUGC UAGAUCUACU UGCACGCUCA CGUAAGAUAA Structure ))(((((.(( .......... .....))..) )))).))))) AE016809.1/20 6094 AUGGUUUGGG AGUUUCUACC AAGAGCCUUA AACUCUUGAU
AE014152.1/30 6360 UCUUAUGU Structure ...)))). AE016809.1/20 6134 UAUGAAGU

Hit rank 4
Download structure in col format: struct.4.col
Score = 487 NS score = 542 P-value = 0.008
Alignment length = 35 Identity = 0.51 ( 18 / 35 ) Number of base-pairs = 13

SequenceStartEnd
AE014152.1/30424-3052080888422
AE016809.1/202496-20259573547690
AE014152.1/30   8286 AUUAUGGCAA CAAGCUACGU CUUGUUGUAA UAAUG
Structure            (((((.(((( ((((...... )))))))).) )))).
AE016809.1/20   7553 GGAAUUGAGG AAAGAUCCAU CUUUCUUUUA UUCUG

Hit rank 5
Download structure in col format: struct.5.col
Score = 682 NS score = 1469 P-value = 0.018
Alignment length = 447 Identity = 0.34 ( 150 / 447 ) Number of base-pairs = 118

SequenceStartEnd
AE014152.1/30424-3052032203660
AE016809.1/202496-20259573417778
AE014152.1/30   3220 AUUGGUACGC AUGCGUGAAG UAAAAAGCUU AUACUUAUUU
Structure            (((....((( ...(((((.( (......... ......))))
AE016809.1/20   7341 AAGGCCAGGG AUGUCAGAAC CCCUGCAUUU UUGCUUGGUU

AE014152.1/30 3260 AUGCUGUGAA UU-GGCGCAG CGUCUCUACA AGACAC-CUU Structure )))..))).. .....((((( (((....... (((((..((( AE016809.1/20 7381 UGAACCCCAA UUAAGUGGGG GGGAU-UGUA AGUUCCUCUC
AE014152.1/30 3298 AAUGUCUAAC AAUAAGUAUA CUUAUUUAUG CUGUGAAUUG Structure (.((.....) ).))))..(( (......... ..)))..((( AE016809.1/20 7420 UACAUUCCCU GAAGAGUUGA GAUAGAUCCC AUCUCAUUAU
AE014152.1/30 3338 GCGCAGCGUC UCUACAAGAC ACCUUAAUGU CUAACAAUAA Structure (.((.((((( ..((.((... ((....(((. .....((((. AE016809.1/20 7460 GAUAAAAAGG UUAUCAAAAU AGUU--GAUU UAAAUGGGUA
AE014152.1/30 3378 GUAUACUUAU UUAUGCUGUG AAUUGGCGCA GCGUCUCUAC Structure .((((((... ((.((((... ....)))).. .......... AE016809.1/20 7498 AUUUCUCUAG CCAUACAUAG UA-UUGUGGA AAACCUCUUU
AE014152.1/30 3418 AAGACACCUU AAUGUCUAAC AAUAAGUAUA CUUAUUUAUG Structure .(((((.... ..))))))). ....)))))) ..))))))). AE016809.1/20 7537 AUUCUGC--U AAUAGGAGGG AAUUGAGGAA AGAUCCAUCU
AE014152.1/30 3458 CUGU-GAAUU GGCGCAGCGU CUCUACAAGA CACCUUAAUG Structure ..))....)) ((((..(((( (........( ((......)) AE016809.1/20 7575 UUCUUUUAUU CUGAGUUGAG GAUUGCUCUC AGCUGCCAUU
AE014152.1/30 3497 UCUAACAAUA AGUAUACUUA UUUAUGCUGU GAAUUGGCGC Structure )....((... ((((((.... ..)))))).) )....))))) AE016809.1/20 7615 GUUGGGGAUU AUAAUGGAUA -UCAUUAUGC CUAUAUUUCA
AE014152.1/30 3537 AGCGUCUCUA CAAGACACCU UAAUGUCUAA CAAUAAGUAU Structure ..)).)).)) ..(((((... ...))))).( ((((((..(( AE016809.1/20 7654 --UCAAGCAU GGUUCUAUAG CUGUAGGGGG GGGUCUGAAC
AE014152.1/30 3577 ACUUAUUUAU GCUGUGAAUU GGCGCAGCGU CUCUACAAGA Structure ....)))))) ..)))))... ..))).)).( (.......)) AE016809.1/20 7692 UUAUGUAGAC UACCCUCUUA GGUUUCUAAU CUAAGUUUGA
AE014152.1/30 3617 CACCUUAAUG UCUAA---CA AUAAGUAUAC UUAUUUAUGC Structure ..))..)))) )))......( (((((....) ))))).)))) AE016809.1/20 7732 AACACUUAGA ACUAAUUGAA UUAUUUAGAG GUAAUGUCCC
AE014152.1/30 3654 UGUGAAU Structure ))))))) AE016809.1/20 7772 CCUACUU

Extreme value distribution parameters

Explanations
AE014152.1/30424-30520 1 9100 GC: 0.37
AE016809.1/202496-202595 1 9660 GC: 0.35
Lambda: 0.0232
K: 0.00156
Score cut: 0
ID: Motif in long sequences




Please cite: