ALIGN calculates a global alignment of two sequences
 version 2.0uPlease cite: Myers and Miller, CABIOS (1989) 4:11-17
seq5                                                167 nt vs.
AL050315                                            367 nt
scoring matrix: DNA, gap penalties: -16/-4
20.8% identity;         Global alignment score: 52

                                                                   
tmp1/f ------------------------------------------------------------
                                                                   
AL0503 AAAGGGACATTGCAGGTGAGATGGAGTTAAAGACCTTGACATGGGAGCAATTATCCTGGA
               10        20        30        40        50        60

                                                        10         
tmp1/f -----------------------------------------GCUACAGGAUGCUUCCUGC
                                                :: : ::::   :::::::
AL0503 TTATCTGGATGGATCCAATGTAATGACTTGAGTTCTTGCCAGC-AGAGGACATTTCCTGC
               70        80        90       100        110         

      20        30                 40        50        60        70
tmp1/f CUGUGGUCAGAUCGA---------ACGGAAGAUAAGGAUCGUGCAUUGGGUCGUUUCAGC
       :::::::::::  ::         :: : ::: :::: : ::: : ::   : :: : : 
AL0503 CTGTGGTCAGAGGGAGATGTGACCACAGGAGA-AAGGTTAGTGAAATGCAGCCTTGCTGG
     120       130       140       150        160       170        

               80         90       100       110       120         
tmp1/f CUCCGCUCGCUCACGAAA-AUUCCAACUGAAACUAAACAUGUAGAAAGCAUAUUGAUUCC
       ::  :   :::   :::  :  :: :    ::: ::   ::: :   :: : : ::  : 
AL0503 CTTTGAA-GCT--GGAAGGAGCCCCAAGCCAACGAA---TGTGGGTGGCCTCTAGAAGCT
      180          190       200       210          220       230  

          130       140       150       160                        
tmp1/f -----AUGUUUGGACGAGGGUUCAAUUCCCUCCAGCUCCACCA-----------------
            : :   :::    : :::   :::::  ::: :: :::                 
AL0503 GGAAAAAGCAAGGAAACAGCTTC---TCCCTT-AGCGCCTCCAGGAAGGAACACAGCCCG
            240       250          260        270       280        

                                                                   
tmp1/f ------------------------------------------------------------
                                                                   
AL0503 GCTGACACCTGGAGTGTAGCCCAGTGAAACCCAGGGGGCTTCCTGACTTACAGGACTAGA
      290       300       310       320       330       340        

                          
tmp1/f -------------------
                          
AL0503 GGATAATACATTTGTGCTG
      350       360       
 resetting matrix to DNA
 tmp1/fasta/seq.seq4.fasta :  169 nt