|
STEM_VARIATIONSection: User Commands (1)Updated: October 2005 Index Return to Main Contents NAMEstem_variation - Colors alignment according to differences from a reference sequence.SYNOPSIS
DESCRIPTIONstem_variation will color alignment according to differences from a reference sequence (first sequence in the alignment if nothing else is given):Green = no change Yellow = semi-conservative basechange Orange = conservative basechange Red = mismatch White = gap OPTIONSstem_variation has no options.EXAMPLESConvert col file to col file.
BUGSReport bugs to col-bugs@bioinf.au.dk.AUTHOREbbe Sloth Andersen (esa@mb.au.dk)SEE ALSO
IndexComments, questions, etc., email
gorodkin@rth.dk. |
Last updated March 26th, 2007 by Jan Gorodkin |