{include file='htmlhead.tpl'} {$smarty.const.TITLE}::Submit {if $state ne "submitted"} {include file='../../../wwwservers/templates/header.html'} {$selected} {if ($state eq "form" || $state eq "resubmit") } {if $state eq "resubmit"} {assign var="re" value=true} {else} {assign var="re" value=false} {/if} {if count($errors) > 0}

Error with submission

{if $errors.checkinput}

{$errors.checkinput}

{/if} {/if}

{$smarty.const.PAGE_TITLE}

Please fill out the submission form and click the Submit button given below. Input fields marked with a * are required.
(Load Example Data)

Input sequence*


Enter your input sequence here in either fasta format or linear sequence (without gaps). [?]


(or) Upload sequence file: {assign var=name value='RNASNP_af,a'} {if $errors.$name}

{$errors.$name}

{/if}
(or) Select sequence from genome database: This feature was disabled at May 31 2023
{assign var=name value='RNASNP_tf,t'} {if $errors.$name}{/if}

SNP details*


Enter your SNP details in the required format [?]
  • XposY, X is the wild-type nt., Y is the mutant and pos is the position
    of nt. (pos=1 for first nucleotide in a sequence)
  • In case of multiple SNPs, separate each SNP with hypen "-"
  • More than one SNP to test in a single run, provide them in seperate lines
(or) Upload SNP file:
{$errors.$name}
{if $errors.job_email}{/if}

Job options


Enter your e-mail adress if you want to receive a notification after the job has finished, and give your job any custom name.
E-mail   
Job name   {$errors.job_name}
{$errors.job_email}

Mode


Select the mode of operation [?]
Mode 1 - based on global folding (RNAfold) [?]
Mode 2 - based on local folding (RNAplfold) [?]
Mode 3 - to screen putative structure-disruptive SNP [?]

Folding window


Select the size of flanking regions on either side of SNP [?]

Additional options


Parameters associated with mode 1 [?]
Measure distance   Correlation coefficient
Minimum length of the sequence interval
Cut-off for the base pair probabilities
{/if}
{/if} {if $state eq "submitted"} {if $mode eq 3 || $smarty.post.job_email} {include file='../../../wwwservers/templates/header.html'}

{$smarty.const.PAGE_TITLE}


Thank you for submission.


The Job id is {$id_for_user}.

{if $smarty.post.job_email}

After your submission is processed and the results are available,
a notification will be sent to {$smarty.post.job_email}.

{/if}

The results will be available here.


{else} {include file='../../../wwwservers/templates/header.html'}

{$smarty.const.PAGE_TITLE}


Thank you for submission.


The Job id is {$id_for_user}.

{if $smarty.post.job_email}

After your submission is processed and the results are available,
a notification will be sent to {$smarty.post.job_email}.

{/if}

The results will be available here.



{/if}
{/if} {if $state eq "internalerror"}

Internal server error :-(

{$errors.internal}

{/if}