##gff-version 3 #!genome-build ASM904v1 #!genome-build-accession NCBI_Assembly:GCF_000009045.1 ##sequence-region NC_000964.3 1 4215606 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=224308 # # BSGatlas version 1 # A fine grained atlas of the Bacillus Subtillis genome # # This is a gff file representation of the BSGatlas for Bacillus subtilis # according to the NCBI assembly ASM904v1. The columns are: # # 1. Chromosome: Here `ncbi168` for coherence with the browser hub # 2. Source: Is BSGatlas for this annotation. # 3. Type: The type for an annotation feature # 4. Start: Start and ... # 5. End: ... ending position of a feature. # 6. Score: Here not used, constant dot as value # 7. Strand: Strand of a feature. Possible values are {"+", "-", "."} # 8. Phase: Translation offset phase for coding sequences. Is either "0" or ".". # 9. List of attributes # # Attibutes are a semicolon separated list of = pairs. # Alternative values are a comma separated list. # Example: Name=GeneA;Synonyms=GeneX,GeneY # # The following keys are used: # # ID: Unique identifier for each row # Parent: List of hierarchical parent relationships # Derives_from: Link to gene from which a transcript feature originates # Name: The name of a feature # locus_tag: A locus identifier for genes; this often is the used identifier in external databases. # Description: Free descriptive text of a feature # comment: more ellaborate descriptive text of a feature # synonyms: List of alternative names # go: List of gene function terms accodting to the Gene Ontology # ec: List of Enzyme Classifications # subtiwiki_category: A gene classification system from SubtiWiki basu168 BSGatlas operon 1 3121 . + . ID=BSGatlas-operon-1;color=#FF00CC basu168 BSGatlas transcript 1 3121 . + . ID=BSGatlas-transcript-2;color=#FF9900;Parent=BSGatlas-operon-1,BSGatlas-gene-4,BSGatlas-gene-5;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-1 basu168 BSGatlas exon 1 3121 . + . ID=BSGatlas-transcript-2_exon;Parent=BSGatlas-transcript-2 basu168 BSGatlas transcript 1 3075 . + . ID=BSGatlas-transcript-1;color=#FF9900;Parent=BSGatlas-operon-1,BSGatlas-gene-4,BSGatlas-gene-5;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-1 basu168 BSGatlas exon 1 3075 . + . ID=BSGatlas-transcript-1_exon;Parent=BSGatlas-transcript-1 basu168 BSGatlas UTR 1 409 . + . ID=BSGatlas-5'UTR-1;Parent=BSGatlas-transcript-1,BSGatlas-transcript-2;comment="5'UTR" basu168 BSGatlas TSS 1 1 . + . ID=BSGatlas-TSS-1;color=#FF0000;comment="Simga: ?, Resolution: 33, Based on: Nicolas et al 5' UTR start, PubMed: " basu168 BSGatlas operon 24 297 . - . ID=BSGatlas-operon-2;color=#B32496 basu168 BSGatlas gene 24 297 . - . ID=BSGatlas-gene-1;color=#8F1D1D;Name=S2;locus_tag=new_24_297_c;Parent=BSGatlas-operon-2 basu168 BSGatlas transcript 24 297 . - . ID=BSGatlas-transcript-3;color=#B37924;Parent=BSGatlas-operon-2,BSGatlas-gene-1;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-3 basu168 BSGatlas ncRNA 24 297 . - . ID=BSGatlas-gene-1_transcribed;color=#8F1D1D;Name=S2;Parent=BSGatlas-transcript-3;synonyms="S2";derives_from=BSGatlas-gene-1 basu168 BSGatlas exon 24 297 . - . ID=BSGatlas-transcript-3_exon;Parent=BSGatlas-transcript-3 basu168 BSGatlas transcript 157 3121 . + . ID=BSGatlas-transcript-5;color=#FF9900;Parent=BSGatlas-operon-1,BSGatlas-gene-4,BSGatlas-gene-5;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-2 basu168 BSGatlas exon 157 3121 . + . ID=BSGatlas-transcript-5_exon;Parent=BSGatlas-transcript-5 basu168 BSGatlas transcript 157 3075 . + . ID=BSGatlas-transcript-4;color=#FF9900;Parent=BSGatlas-operon-1,BSGatlas-gene-4,BSGatlas-gene-5;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-2 basu168 BSGatlas exon 157 3075 . + . ID=BSGatlas-transcript-4_exon;Parent=BSGatlas-transcript-4 basu168 BSGatlas UTR 157 409 . + . ID=BSGatlas-5'UTR-2;Parent=BSGatlas-transcript-4,BSGatlas-transcript-5;comment="5'UTR" basu168 BSGatlas gene 157 274 . + . ID=BSGatlas-gene-2;color=#999999;Name=S3;locus_tag=new_150_409 basu168 BSGatlas riboswitch 157 274 . + . ID=BSGatlas-gene-2_transcribed;color=#999999;Name=S3;synonyms="S3";derives_from=BSGatlas-gene-2 basu168 BSGatlas TSS 157 157 . + . ID=BSGatlas-TSS-2;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,2846289,2987848" basu168 BSGatlas TSS 297 297 . - . ID=BSGatlas-TSS-3;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 299 1067 . - . ID=BSGatlas-operon-3;color=#B32496 basu168 BSGatlas gene 299 1067 . - . ID=BSGatlas-gene-3;color=#8F1D1D;Name=S4;locus_tag=new_299_1067_c;Parent=BSGatlas-operon-3 basu168 BSGatlas transcript 299 1067 . - . ID=BSGatlas-transcript-6;color=#B37924;Parent=BSGatlas-operon-3,BSGatlas-gene-3;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-4 basu168 BSGatlas ncRNA 299 1067 . - . ID=BSGatlas-gene-3_transcribed;color=#8F1D1D;Name=S4;Parent=BSGatlas-transcript-6;synonyms="S4";derives_from=BSGatlas-gene-3 basu168 BSGatlas exon 299 1067 . - . ID=BSGatlas-transcript-6_exon;Parent=BSGatlas-transcript-6 basu168 BSGatlas gene 410 1750 . + . ID=BSGatlas-gene-4;color=#1E90FF;Name=dnaA;locus_tag=BSU00010,BSU_00010;Parent=BSGatlas-operon-1 basu168 BSGatlas CDS 410 1750 . + 0 ID=BSGatlas-gene-4_transcribed;color=#1E90FF;Name=dnaA;Parent=BSGatlas-transcript-1,BSGatlas-transcript-2,BSGatlas-transcript-4,BSGatlas-transcript-5;comment="chromosomal replication initiator informationalATPase";synonyms="dnaA,dnaH,dnaJ,dnaK";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003688 DNA replication origin binding,GO:0005515 protein binding,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006260 DNA replication,GO:0006270 DNA replication initiation,GO:0006275 regulation of DNA replication,GO:0017111 nucleoside-triphosphatase activity,GO:0043565 sequence-specific DNA binding,GO:0098847 sequence-specific single stranded DNA binding";derives_from=BSGatlas-gene-4 basu168 BSGatlas TSS 1066 1066 . - . ID=BSGatlas-TSS-4;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 1751 1938 . + . ID=BSGatlas-internal_UTR-1;Parent=BSGatlas-transcript-1,BSGatlas-transcript-2,BSGatlas-transcript-4,BSGatlas-transcript-5;comment="internal_UTR" basu168 BSGatlas gene 1939 3075 . + . ID=BSGatlas-gene-5;color=#1E90FF;Name=dnaN;locus_tag=BSU00020,BSU_00020;Parent=BSGatlas-operon-1 basu168 BSGatlas CDS 1939 3075 . + 0 ID=BSGatlas-gene-5_transcribed;color=#1E90FF;Name=dnaN;Parent=BSGatlas-transcript-1,BSGatlas-transcript-2,BSGatlas-transcript-4,BSGatlas-transcript-5;comment="DNA polymerase III (beta subunit)";synonyms="dnaG,dnaK,dnaN";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.7 Mismatch repair (MMR),SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.7.7,EC-2.7.7.7";go="GO:0003677 DNA binding,GO:0003887 DNA-directed DNA polymerase activity,GO:0005737 cytoplasm,GO:0006260 DNA replication,GO:0006261 DNA-dependent DNA replication,GO:0008408 3'-5' exonuclease activity,GO:0009360 DNA polymerase III complex,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0090305 nucleic acid phosphodiester bond hydrolysis";derives_from=BSGatlas-gene-5 basu168 BSGatlas terminator 3037 3081 . + . ID=BSGatlas-terminator-1;Parent=BSGatlas-transcript-1,BSGatlas-transcript-4;comment="Based on: Nicolas et al. downshift, Energy: -14.2[kcal/mol]" basu168 BSGatlas UTR 3076 3121 . + . ID=BSGatlas-3'UTR-1;Parent=BSGatlas-transcript-2,BSGatlas-transcript-5;comment="3'UTR" basu168 BSGatlas terminator 3082 3121 . + . ID=BSGatlas-terminator-2;Parent=BSGatlas-transcript-2,BSGatlas-transcript-5;comment="Based on: BsubCyc,DBTBS, Energy: -16[kcal/mol]" basu168 BSGatlas operon 3180 9501 . + . ID=BSGatlas-operon-4;color=#FF00CC basu168 BSGatlas transcript 3180 9501 . + . ID=BSGatlas-transcript-8;color=#FF9900;Parent=BSGatlas-operon-4,BSGatlas-gene-6,BSGatlas-gene-7,BSGatlas-gene-8,BSGatlas-gene-9,BSGatlas-gene-10;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-5 basu168 BSGatlas exon 3180 9501 . + . ID=BSGatlas-transcript-8_exon;Parent=BSGatlas-transcript-8 basu168 BSGatlas transcript 3180 6833 . + . ID=BSGatlas-transcript-7;color=#FF9900;Parent=BSGatlas-operon-4,BSGatlas-gene-6,BSGatlas-gene-7,BSGatlas-gene-8,BSGatlas-gene-9;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-5 basu168 BSGatlas exon 3180 6833 . + . ID=BSGatlas-transcript-7_exon;Parent=BSGatlas-transcript-7 basu168 BSGatlas UTR 3180 3205 . + . ID=BSGatlas-5'UTR-3;Parent=BSGatlas-transcript-7,BSGatlas-transcript-8;comment="5'UTR" basu168 BSGatlas TSS 3180 3180 . + . ID=BSGatlas-TSS-5;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,2987848" basu168 BSGatlas gene 3206 3421 . + . ID=BSGatlas-gene-6;color=#1E90FF;Name=rlbA;locus_tag=BSU00030,BSU_00030;Parent=BSGatlas-operon-4 basu168 BSGatlas CDS 3206 3421 . + 0 ID=BSGatlas-gene-6_transcribed;color=#1E90FF;Name=rlbA;Parent=BSGatlas-transcript-7,BSGatlas-transcript-8;comment="RNA binding protein involved in ribosomematuration";synonyms="rlbA,yaaA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.6 Ribosome assembly";go="GO:0003723 RNA binding";derives_from=BSGatlas-gene-6 basu168 BSGatlas transcript 3437 9501 . + . ID=BSGatlas-transcript-10;color=#FF9900;Parent=BSGatlas-operon-4,BSGatlas-gene-7,BSGatlas-gene-8,BSGatlas-gene-9,BSGatlas-gene-10;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-6 basu168 BSGatlas exon 3437 9501 . + . ID=BSGatlas-transcript-10_exon;Parent=BSGatlas-transcript-10 basu168 BSGatlas transcript 3437 6833 . + . ID=BSGatlas-transcript-9;color=#FF9900;Parent=BSGatlas-operon-4,BSGatlas-gene-7,BSGatlas-gene-8,BSGatlas-gene-9;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-6 basu168 BSGatlas exon 3437 6833 . + . ID=BSGatlas-transcript-9_exon;Parent=BSGatlas-transcript-9 basu168 BSGatlas gene 3437 4549 . + . ID=BSGatlas-gene-7;color=#1E90FF;Name=recF;locus_tag=BSU00040,BSU_00040;Parent=BSGatlas-operon-4 basu168 BSGatlas CDS 3437 4549 . + 0 ID=BSGatlas-gene-7_transcribed;color=#1E90FF;Name=recF;Parent=BSGatlas-transcript-10,BSGatlas-transcript-7,BSGatlas-transcript-8,BSGatlas-transcript-9;comment="RecA filament-DNA complex stabilisation, ssDNAand dsDNA binding, ATP binding";synonyms="recF";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003697 single-stranded DNA binding,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006260 DNA replication,GO:0006281 DNA repair,GO:0006302 double-strand break repair,GO:0006974 cellular response to DNA damage stimulus,GO:0009295 nucleoid,GO:0009432 SOS response,GO:0043590 bacterial nucleoid";derives_from=BSGatlas-gene-7 basu168 BSGatlas TSS 3650 3650 . + . ID=BSGatlas-TSS-6;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 2987848" basu168 BSGatlas UTR 4550 4566 . + . ID=BSGatlas-internal_UTR-2;Parent=BSGatlas-transcript-10,BSGatlas-transcript-7,BSGatlas-transcript-8,BSGatlas-transcript-9;comment="internal_UTR" basu168 BSGatlas gene 4567 4812 . + . ID=BSGatlas-gene-8;color=#1E90FF;Name=remB;locus_tag=BSU00050,BSU_00050;Parent=BSGatlas-operon-4 basu168 BSGatlas CDS 4567 4812 . + 0 ID=BSGatlas-gene-8_transcribed;color=#1E90FF;Name=remB;Parent=BSGatlas-transcript-10,BSGatlas-transcript-7,BSGatlas-transcript-8,BSGatlas-transcript-9;comment="regulator of extracellular matrix formation";synonyms="remB,yaaB";subtiwiki_category="SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.2 Biofilm formation,SW 4.1.2.5 Other proteins required for biofilm formation";go="GO:0042710 biofilm formation";derives_from=BSGatlas-gene-8 basu168 BSGatlas UTR 4813 4866 . + . ID=BSGatlas-internal_UTR-3;Parent=BSGatlas-transcript-10,BSGatlas-transcript-7,BSGatlas-transcript-8,BSGatlas-transcript-9;comment="internal_UTR" basu168 BSGatlas gene 4867 6783 . + . ID=BSGatlas-gene-9;color=#1E90FF;Name=gyrB;locus_tag=BSU00060,BSU_00060;Parent=BSGatlas-operon-4 basu168 BSGatlas CDS 4867 6783 . + 0 ID=BSGatlas-gene-9_transcribed;color=#1E90FF;Name=gyrB;Parent=BSGatlas-transcript-10,BSGatlas-transcript-7,BSGatlas-transcript-8,BSGatlas-transcript-9;comment="DNA gyrase (subunit B)";synonyms="gyrB,novA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.3 DNA condensation/ segregation,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";ec="5.99.1.3";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0003677 DNA binding,GO:0003916 DNA topoisomerase activity,GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity,GO:0005524 ATP binding,GO:0005694 chromosome,GO:0005737 cytoplasm,GO:0006261 DNA-dependent DNA replication,GO:0006265 DNA topological change,GO:0007059 chromosome segregation,GO:0009295 nucleoid,GO:0016853 isomerase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-9 basu168 BSGatlas TSS 6414 6414 . - . ID=BSGatlas-TSS-7;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 6784 6993 . + . ID=BSGatlas-internal_UTR-4;Parent=BSGatlas-transcript-10,BSGatlas-transcript-8;comment="internal_UTR" basu168 BSGatlas UTR 6784 6833 . + . ID=BSGatlas-3'UTR-2;Parent=BSGatlas-transcript-7,BSGatlas-transcript-9;comment="3'UTR" basu168 BSGatlas terminator 6788 6833 . + . ID=BSGatlas-terminator-3;Parent=BSGatlas-transcript-7,BSGatlas-transcript-9;comment="Based on: BsubCyc,DBTBS, Energy: -14.4[kcal/mol]" basu168 BSGatlas transcript 6916 9501 . + . ID=BSGatlas-transcript-11;color=#FF9900;Parent=BSGatlas-operon-4,BSGatlas-gene-10;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-8 basu168 BSGatlas exon 6916 9501 . + . ID=BSGatlas-transcript-11_exon;Parent=BSGatlas-transcript-11 basu168 BSGatlas UTR 6916 6993 . + . ID=BSGatlas-5'UTR-4;Parent=BSGatlas-transcript-11;comment="5'UTR" basu168 BSGatlas TSS 6916 6916 . + . ID=BSGatlas-TSS-8;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 17962296,2987848" basu168 BSGatlas gene 6994 9459 . + . ID=BSGatlas-gene-10;color=#1E90FF;Name=gyrA;locus_tag=BSU00070,BSU_00070;Parent=BSGatlas-operon-4 basu168 BSGatlas CDS 6994 9459 . + 0 ID=BSGatlas-gene-10_transcribed;color=#1E90FF;Name=gyrA;Parent=BSGatlas-transcript-10,BSGatlas-transcript-11,BSGatlas-transcript-8;comment="DNA gyrase (subunit A)";synonyms="gyrA,nalA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.3 DNA condensation/ segregation,SW 6 Groups of genes,SW 6.1 Essential genes";ec="5.99.1.3";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003916 DNA topoisomerase activity,GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity,GO:0005524 ATP binding,GO:0005694 chromosome,GO:0005737 cytoplasm,GO:0006261 DNA-dependent DNA replication,GO:0006265 DNA topological change,GO:0007059 chromosome segregation,GO:0009295 nucleoid,GO:0016853 isomerase activity";derives_from=BSGatlas-gene-10 basu168 BSGatlas operon 9374 14850 . + . ID=BSGatlas-operon-5;color=#FF00CC basu168 BSGatlas transcript 9374 14850 . + . ID=BSGatlas-transcript-12;color=#FF9900;Parent=BSGatlas-operon-5,BSGatlas-gene-12,BSGatlas-gene-13,BSGatlas-gene-14,BSGatlas-gene-15,BSGatlas-gene-16;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-9 basu168 BSGatlas exon 9374 14850 . + . ID=BSGatlas-transcript-12_exon;Parent=BSGatlas-transcript-12 basu168 BSGatlas UTR 9374 9809 . + . ID=BSGatlas-5'UTR-5;Parent=BSGatlas-transcript-12;comment="5'UTR" basu168 BSGatlas TSS 9374 9374 . + . ID=BSGatlas-TSS-9;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 9460 9501 . + . ID=BSGatlas-3'UTR-3;Parent=BSGatlas-transcript-10,BSGatlas-transcript-11,BSGatlas-transcript-8;comment="3'UTR" basu168 BSGatlas terminator 9461 9501 . + . ID=BSGatlas-terminator-4;Parent=BSGatlas-transcript-10,BSGatlas-transcript-11,BSGatlas-transcript-8;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.9[kcal/mol]" basu168 BSGatlas transcript 9540 14850 . + . ID=BSGatlas-transcript-13;color=#FF9900;Parent=BSGatlas-operon-5,BSGatlas-gene-12,BSGatlas-gene-13,BSGatlas-gene-14,BSGatlas-gene-15,BSGatlas-gene-16;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-10 basu168 BSGatlas exon 9540 14850 . + . ID=BSGatlas-transcript-13_exon;Parent=BSGatlas-transcript-13 basu168 BSGatlas UTR 9540 9809 . + . ID=BSGatlas-5'UTR-6;Parent=BSGatlas-transcript-13;comment="5'UTR" basu168 BSGatlas TSS 9540 9540 . + . ID=BSGatlas-TSS-10;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,6312418" basu168 BSGatlas transcript 9637 14850 . + . ID=BSGatlas-transcript-14;color=#FF9900;Parent=BSGatlas-operon-5,BSGatlas-gene-12,BSGatlas-gene-13,BSGatlas-gene-14,BSGatlas-gene-15,BSGatlas-gene-16;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-11 basu168 BSGatlas exon 9637 14850 . + . ID=BSGatlas-transcript-14_exon;Parent=BSGatlas-transcript-14 basu168 BSGatlas UTR 9637 9809 . + . ID=BSGatlas-5'UTR-7;Parent=BSGatlas-transcript-14;comment="5'UTR" basu168 BSGatlas TSS 9637 9637 . + . ID=BSGatlas-TSS-11;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,6312418" basu168 BSGatlas gene 9748 9815 . - . ID=BSGatlas-gene-11;color=#24B324;Name=Bacillaceae-1 basu168 BSGatlas sRNA 9748 9815 . - . ID=BSGatlas-gene-11_transcribed;color=#24B324;Name=Bacillaceae-1;derives_from=BSGatlas-gene-11 basu168 BSGatlas gene 9810 11364 . + . ID=BSGatlas-gene-12;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnO-16S;locus_tag=BSU_rRNA_1,BSU_RRNA_1;Parent=BSGatlas-operon-5 basu168 BSGatlas rRNA 9810 11364 . + . ID=BSGatlas-gene-12_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnO-16S;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="ribosomal RNA-16S";synonyms="rrnO-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-12 basu168 BSGatlas UTR 11365 11462 . + . ID=BSGatlas-internal_UTR-5;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="internal_UTR" basu168 BSGatlas gene 11463 11540 . + . ID=BSGatlas-gene-13;color=#FFFF00;Name=trnO-Ile;locus_tag=BSU_tRNA_5,BSU_TRNA_5;Parent=BSGatlas-operon-5 basu168 BSGatlas tRNA 11463 11540 . + . ID=BSGatlas-gene-13_transcribed;color=#FFFF00;Name=trnO-Ile;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="tRNA-Ile";synonyms="trnO-Ile";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-13 basu168 BSGatlas gene 11551 11627 . + . ID=BSGatlas-gene-14;color=#FFFF00;Name=trnO-Ala;locus_tag=BSU_tRNA_6,BSU_TRNA_6;Parent=BSGatlas-operon-5 basu168 BSGatlas tRNA 11551 11627 . + . ID=BSGatlas-gene-14_transcribed;color=#FFFF00;Name=trnO-Ala;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="tRNA-Ala";synonyms="trnO-Ala";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-14 basu168 BSGatlas UTR 11628 11705 . + . ID=BSGatlas-internal_UTR-6;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="internal_UTR" basu168 BSGatlas gene 11706 14636 . + . ID=BSGatlas-gene-15;color=#CC33FF;Name=LSU-rRNA-archaea_rrnO-23S;locus_tag=BSU_rRNA_2,BSU_RRNA_2;Parent=BSGatlas-operon-5 basu168 BSGatlas rRNA 11706 14636 . + . ID=BSGatlas-gene-15_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnO-23S;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="ribosomal RNA-23S";synonyms="rrnO-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-15 basu168 BSGatlas UTR 14637 14690 . + . ID=BSGatlas-internal_UTR-7;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="internal_UTR" basu168 BSGatlas gene 14691 14810 . + . ID=BSGatlas-gene-16;color=#CC33FF;Name=5S-rRNA_rrnO-5S;locus_tag=BSU_rRNA_3,BSU_RRNA_3;Parent=BSGatlas-operon-5 basu168 BSGatlas rRNA 14691 14810 . + . ID=BSGatlas-gene-16_transcribed;color=#CC33FF;Name=5S-rRNA_rrnO-5S;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="ribosomal RNA-5S";synonyms="rrnO-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-16 basu168 BSGatlas UTR 14811 14850 . + . ID=BSGatlas-3'UTR-4;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="3'UTR" basu168 BSGatlas terminator 14812 14850 . + . ID=BSGatlas-terminator-5;Parent=BSGatlas-transcript-12,BSGatlas-transcript-13,BSGatlas-transcript-14;comment="Based on: BsubCyc,DBTBS, Energy: -15.7[kcal/mol]" basu168 BSGatlas operon 14847 15985 . - . ID=BSGatlas-operon-6;color=#B32496 basu168 BSGatlas transcript 14847 15985 . - . ID=BSGatlas-transcript-16;color=#B37924;Parent=BSGatlas-operon-6,BSGatlas-gene-17;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-14 basu168 BSGatlas exon 14847 15985 . - . ID=BSGatlas-transcript-16_exon;Parent=BSGatlas-transcript-16 basu168 BSGatlas transcript 14847 15875 . - . ID=BSGatlas-transcript-15;color=#B37924;Parent=BSGatlas-operon-6,BSGatlas-gene-17;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-13 basu168 BSGatlas exon 14847 15875 . - . ID=BSGatlas-transcript-15_exon;Parent=BSGatlas-transcript-15 basu168 BSGatlas gene 14847 15794 . - . ID=BSGatlas-gene-17;color=#3474B3;Name=yaaC;locus_tag=BSU00080,BSU_00080;Parent=BSGatlas-operon-6 basu168 BSGatlas CDS 14847 15794 . - 0 ID=BSGatlas-gene-17_transcribed;color=#3474B3;Name=yaaC;Parent=BSGatlas-transcript-15,BSGatlas-transcript-16;comment="conserved protein of unknown function";synonyms="yaaC";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-17 basu168 BSGatlas UTR 15795 15985 . - . ID=BSGatlas-5'UTR-9;Parent=BSGatlas-transcript-16;comment="5'UTR" basu168 BSGatlas UTR 15795 15875 . - . ID=BSGatlas-5'UTR-8;Parent=BSGatlas-transcript-15;comment="5'UTR" basu168 BSGatlas operon 15870 17445 . + . ID=BSGatlas-operon-7;color=#FF00CC basu168 BSGatlas transcript 15870 17445 . + . ID=BSGatlas-transcript-18;color=#FF9900;Parent=BSGatlas-operon-7,BSGatlas-gene-18;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-12 basu168 BSGatlas exon 15870 17445 . + . ID=BSGatlas-transcript-18_exon;Parent=BSGatlas-transcript-18 basu168 BSGatlas transcript 15870 17381 . + . ID=BSGatlas-transcript-17;color=#FF9900;Parent=BSGatlas-operon-7,BSGatlas-gene-18;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-12 basu168 BSGatlas exon 15870 17381 . + . ID=BSGatlas-transcript-17_exon;Parent=BSGatlas-transcript-17 basu168 BSGatlas UTR 15870 15914 . + . ID=BSGatlas-5'UTR-10;Parent=BSGatlas-transcript-17,BSGatlas-transcript-18;comment="5'UTR" basu168 BSGatlas TSS 15870 15870 . + . ID=BSGatlas-TSS-12;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 15875 15875 . - . ID=BSGatlas-TSS-13;color=#B32424;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 15897 17833 . - . ID=BSGatlas-operon-8;color=#B32496 basu168 BSGatlas transcript 15897 17833 . - . ID=BSGatlas-transcript-19;color=#B37924;Parent=BSGatlas-operon-8,BSGatlas-gene-19;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-16 basu168 BSGatlas exon 15897 17833 . - . ID=BSGatlas-transcript-19_exon;Parent=BSGatlas-transcript-19 basu168 BSGatlas UTR 15897 17237 . - . ID=BSGatlas-3'UTR-5;Parent=BSGatlas-transcript-19;comment="3'UTR" basu168 BSGatlas terminator 15897 15941 . - . ID=BSGatlas-terminator-6;Parent=BSGatlas-transcript-19;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas gene 15915 17381 . + . ID=BSGatlas-gene-18;color=#1E90FF;Name=guaB;locus_tag=BSU00090,BSU_00090;Parent=BSGatlas-operon-7 basu168 BSGatlas CDS 15915 17381 . + 0 ID=BSGatlas-gene-18_transcribed;color=#1E90FF;Name=guaB;Parent=BSGatlas-transcript-17,BSGatlas-transcript-18;comment="inosine-monophosphate dehydrogenase";synonyms="guaA,guaB";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides,SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.3 Targets of (p)ppGpp,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.8 Phosphorylation on either a Ser, Thr or Tyr residue";ec="1.1.1.205,EC-1.1.1.205";go="GO:0000166 nucleotide binding,GO:0003824 catalytic activity,GO:0003938 IMP dehydrogenase activity,GO:0006164 purine nucleotide biosynthetic process,GO:0006177 GMP biosynthetic process,GO:0016491 oxidoreductase activity,GO:0030554 adenyl nucleotide binding,GO:0046872 metal ion binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-18 basu168 BSGatlas TSS 15985 15985 . - . ID=BSGatlas-TSS-14;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 17238 17833 . - . ID=BSGatlas-gene-19;color=#8F1D1D;Name=S9;locus_tag=new_17238_17833_c;Parent=BSGatlas-operon-8 basu168 BSGatlas ncRNA 17238 17833 . - . ID=BSGatlas-gene-19_transcribed;color=#8F1D1D;Name=S9;Parent=BSGatlas-transcript-19;synonyms="S9";derives_from=BSGatlas-gene-19 basu168 BSGatlas terminator 17347 17391 . + . ID=BSGatlas-terminator-7;Parent=BSGatlas-transcript-17;comment="Based on: Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas UTR 17382 17445 . + . ID=BSGatlas-3'UTR-6;Parent=BSGatlas-transcript-18;comment="3'UTR" basu168 BSGatlas terminator 17403 17445 . + . ID=BSGatlas-terminator-8;Parent=BSGatlas-transcript-18;comment="Based on: BsubCyc,DBTBS, Energy: -15.7[kcal/mol]" basu168 BSGatlas operon 17453 22204 . + . ID=BSGatlas-operon-9;color=#FF00CC basu168 BSGatlas transcript 17453 22204 . + . ID=BSGatlas-transcript-22;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-20,BSGatlas-gene-21,BSGatlas-gene-23,BSGatlas-gene-24,BSGatlas-gene-25;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-15 basu168 BSGatlas exon 17453 22204 . + . ID=BSGatlas-transcript-22_exon;Parent=BSGatlas-transcript-22 basu168 BSGatlas transcript 17453 20853 . + . ID=BSGatlas-transcript-21;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-20,BSGatlas-gene-21,BSGatlas-gene-23,BSGatlas-gene-24;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-15 basu168 BSGatlas exon 17453 20853 . + . ID=BSGatlas-transcript-21_exon;Parent=BSGatlas-transcript-21 basu168 BSGatlas transcript 17453 18865 . + . ID=BSGatlas-transcript-20;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-20;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-15 basu168 BSGatlas exon 17453 18865 . + . ID=BSGatlas-transcript-20_exon;Parent=BSGatlas-transcript-20 basu168 BSGatlas UTR 17453 17533 . + . ID=BSGatlas-5'UTR-11;Parent=BSGatlas-transcript-20,BSGatlas-transcript-21,BSGatlas-transcript-22;comment="5'UTR" basu168 BSGatlas TSS 17453 17453 . + . ID=BSGatlas-TSS-15;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 17534 18865 . + . ID=BSGatlas-gene-20;color=#1E90FF;Name=dacA;locus_tag=BSU00100,BSU_00100;Parent=BSGatlas-operon-9 basu168 BSGatlas CDS 17534 18865 . + 0 ID=BSGatlas-gene-20_transcribed;color=#1E90FF;Name=dacA;Parent=BSGatlas-transcript-20,BSGatlas-transcript-21,BSGatlas-transcript-22;comment="D-alanyl-D-alanine carboxypeptidase(penicillin-binding protein 5)";synonyms="dacA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.7 Penicillin-binding proteins,SW 6 Groups of genes,SW 6.12 Secreted proteins,SW 6.2 Membrane proteins";ec="3.4.16.4,EC-3.4.16.4";go="GO:0004180 carboxypeptidase activity,GO:0005576 extracellular region,GO:0005618 cell wall,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008360 regulation of cell shape,GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity,GO:0009252 peptidoglycan biosynthetic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-20 basu168 BSGatlas TSS 17833 17833 . - . ID=BSGatlas-TSS-16;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 18725 18769 . + . ID=BSGatlas-terminator-9;Parent=BSGatlas-transcript-20;comment="Based on: Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas UTR 18866 19061 . + . ID=BSGatlas-internal_UTR-8;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22;comment="internal_UTR" basu168 BSGatlas transcript 18976 22204 . + . ID=BSGatlas-transcript-25;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-21,BSGatlas-gene-23,BSGatlas-gene-24,BSGatlas-gene-25;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-17 basu168 BSGatlas exon 18976 22204 . + . ID=BSGatlas-transcript-25_exon;Parent=BSGatlas-transcript-25 basu168 BSGatlas transcript 18976 20853 . + . ID=BSGatlas-transcript-24;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-21,BSGatlas-gene-23,BSGatlas-gene-24;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-17 basu168 BSGatlas exon 18976 20853 . + . ID=BSGatlas-transcript-24_exon;Parent=BSGatlas-transcript-24 basu168 BSGatlas transcript 18976 20558 . + . ID=BSGatlas-transcript-23;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-21,BSGatlas-gene-23;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-17 basu168 BSGatlas exon 18976 20558 . + . ID=BSGatlas-transcript-23_exon;Parent=BSGatlas-transcript-23 basu168 BSGatlas UTR 18976 19061 . + . ID=BSGatlas-5'UTR-12;Parent=BSGatlas-transcript-23,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="5'UTR" basu168 BSGatlas TSS 18976 18976 . + . ID=BSGatlas-TSS-17;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 19062 19946 . + . ID=BSGatlas-gene-21;color=#1E90FF;Name=pdxS;locus_tag=BSU00110,BSU_00110;Parent=BSGatlas-operon-9 basu168 BSGatlas CDS 19062 19946 . + 0 ID=BSGatlas-gene-21_transcribed;color=#1E90FF;Name=pdxS;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22,BSGatlas-transcript-23,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="glutamine amidotransferase for pyridoxalphosphate synthesis; pyridoxal 5'-phosphate synthasecomplex, synthase subunit";synonyms="pdxS,yaaD";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.12 Biosynthesis of pyridoxal phosphate,SW 3 Information processing,SW 3.1 Genetics,SW 3.1.9 Newly identified competence genes,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.4.8 Phosphorylation on either a Ser, Thr or Tyr residue";ec="4.3.3.6,4.3.3.6;4.-.-.-";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016829 lyase activity,GO:0034301 endospore formation,GO:0042823 pyridoxal phosphate biosynthetic process";derives_from=BSGatlas-gene-21 basu168 BSGatlas operon 19194 19923 . - . ID=BSGatlas-operon-10;color=#B32496 basu168 BSGatlas gene 19194 19923 . - . ID=BSGatlas-gene-22;color=#8F1D1D;Name=S13;locus_tag=new_19194_19923_c;Parent=BSGatlas-operon-10 basu168 BSGatlas transcript 19194 19923 . - . ID=BSGatlas-transcript-26;color=#B37924;Parent=BSGatlas-operon-10,BSGatlas-gene-22;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-18 basu168 BSGatlas ncRNA 19194 19923 . - . ID=BSGatlas-gene-22_transcribed;color=#8F1D1D;Name=S13;Parent=BSGatlas-transcript-26;synonyms="S13";derives_from=BSGatlas-gene-22 basu168 BSGatlas exon 19194 19923 . - . ID=BSGatlas-transcript-26_exon;Parent=BSGatlas-transcript-26 basu168 BSGatlas TSS 19923 19923 . - . ID=BSGatlas-TSS-18;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 19947 19967 . + . ID=BSGatlas-internal_UTR-9;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22,BSGatlas-transcript-23,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="internal_UTR" basu168 BSGatlas gene 19968 20558 . + . ID=BSGatlas-gene-23;color=#1E90FF;Name=pdxT;locus_tag=BSU00120,BSU_00120;Parent=BSGatlas-operon-9 basu168 BSGatlas CDS 19968 20558 . + 0 ID=BSGatlas-gene-23_transcribed;color=#1E90FF;Name=pdxT;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22,BSGatlas-transcript-23,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="glutamine amidotransferase for pyridoxalphosphate synthesis; pyridoxal 5'-phosphate synthasecomplex, glutamine amidotransferase subunit PdxT";synonyms="pdxT,yaaE";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.12 Biosynthesis of pyridoxal phosphate,SW 3 Information processing,SW 3.1 Genetics,SW 3.1.9 Newly identified competence genes";ec="3.5.1.2;4.3.3.6,4.3.3.6";go="GO:0006541 glutamine metabolic process,GO:0006543 glutamine catabolic process,GO:0016740 transferase activity,GO:0042823 pyridoxal phosphate biosynthetic process";derives_from=BSGatlas-gene-23 basu168 BSGatlas UTR 20559 20609 . + . ID=BSGatlas-internal_UTR-10;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="internal_UTR" basu168 BSGatlas gene 20610 20823 . + . ID=BSGatlas-gene-24;color=#999999;Name=T-box_tboS;locus_tag=BSU_misc_RNA_1,BSU_MISC_RNA_1;Parent=BSGatlas-operon-9 basu168 BSGatlas riboswitch 20610 20823 . + . ID=BSGatlas-gene-24_transcribed;color=#999999;Name=T-box_tboS;Parent=BSGatlas-transcript-21,BSGatlas-transcript-22,BSGatlas-transcript-24,BSGatlas-transcript-25;comment="T-box riboswitch specific of serine tRNA ligase";synonyms="BSU_misc_RNA_1";derives_from=BSGatlas-gene-24 basu168 BSGatlas terminator 20799 20853 . + . ID=BSGatlas-terminator-10;Parent=BSGatlas-transcript-21,BSGatlas-transcript-24;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -27.5[kcal/mol]" basu168 BSGatlas UTR 20824 20879 . + . ID=BSGatlas-internal_UTR-11;Parent=BSGatlas-transcript-22,BSGatlas-transcript-25;comment="internal_UTR" basu168 BSGatlas UTR 20824 20853 . + . ID=BSGatlas-3'UTR-7;Parent=BSGatlas-transcript-21,BSGatlas-transcript-24;comment="3'UTR" basu168 BSGatlas transcript 20880 22204 . + . ID=BSGatlas-transcript-27;color=#FF9900;Parent=BSGatlas-operon-9,BSGatlas-gene-25;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 20880 22204 . + . ID=BSGatlas-transcript-27_exon;Parent=BSGatlas-transcript-27 basu168 BSGatlas gene 20880 22157 . + . ID=BSGatlas-gene-25;color=#1E90FF;Name=serS;locus_tag=BSU00130,BSU_00130;Parent=BSGatlas-operon-9 basu168 BSGatlas CDS 20880 22157 . + 0 ID=BSGatlas-gene-25_transcribed;color=#1E90FF;Name=serS;Parent=BSGatlas-transcript-22,BSGatlas-transcript-25,BSGatlas-transcript-27;comment="seryl-tRNA synthetase";synonyms="serS";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.10 Aminoacyl-tRNA synthetases,SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.1.1.11,EC-6.1.1.11";go="GO:0000166 nucleotide binding,GO:0004812 aminoacyl-tRNA ligase activity,GO:0004828 serine-tRNA ligase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006418 tRNA aminoacylation for protein translation,GO:0006434 seryl-tRNA aminoacylation,GO:0016260 selenocysteine biosynthetic process,GO:0016874 ligase activity,GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process";derives_from=BSGatlas-gene-25 basu168 BSGatlas terminator 22154 22204 . + . ID=BSGatlas-terminator-11;Parent=BSGatlas-transcript-22,BSGatlas-transcript-25,BSGatlas-transcript-27;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.1[kcal/mol]" basu168 BSGatlas UTR 22158 22204 . + . ID=BSGatlas-3'UTR-8;Parent=BSGatlas-transcript-22,BSGatlas-transcript-25,BSGatlas-transcript-27;comment="3'UTR" basu168 BSGatlas operon 22268 23200 . + . ID=BSGatlas-operon-11;color=#FF00CC basu168 BSGatlas transcript 22268 23200 . + . ID=BSGatlas-transcript-30;color=#FF9900;Parent=BSGatlas-operon-11,BSGatlas-gene-26;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-19 basu168 BSGatlas exon 22268 23200 . + . ID=BSGatlas-transcript-30_exon;Parent=BSGatlas-transcript-30 basu168 BSGatlas transcript 22268 22562 . + . ID=BSGatlas-transcript-29;color=#FF9900;Parent=BSGatlas-operon-11,BSGatlas-gene-26;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-19 basu168 BSGatlas exon 22268 22562 . + . ID=BSGatlas-transcript-29_exon;Parent=BSGatlas-transcript-29 basu168 BSGatlas transcript 22268 22429 . + . ID=BSGatlas-transcript-28;color=#FF9900;Parent=BSGatlas-operon-11,BSGatlas-gene-26;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-19 basu168 BSGatlas exon 22268 22429 . + . ID=BSGatlas-transcript-28_exon;Parent=BSGatlas-transcript-28 basu168 BSGatlas UTR 22268 22290 . + . ID=BSGatlas-5'UTR-13;Parent=BSGatlas-transcript-28,BSGatlas-transcript-29,BSGatlas-transcript-30;comment="5'UTR" basu168 BSGatlas TSS 22268 22268 . + . ID=BSGatlas-TSS-19;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 22291 22384 . + . ID=BSGatlas-gene-26;color=#FFFF00;Name=trnSL-Ser1;locus_tag=BSU_tRNA_7,BSU_TRNA_7;Parent=BSGatlas-operon-11 basu168 BSGatlas tRNA 22291 22384 . + . ID=BSGatlas-gene-26_transcribed;color=#FFFF00;Name=trnSL-Ser1;Parent=BSGatlas-transcript-28,BSGatlas-transcript-29,BSGatlas-transcript-30;comment="tRNA-Ser";synonyms="trnSL-Ser1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-26 basu168 BSGatlas UTR 22385 23200 . + . ID=BSGatlas-3'UTR-11;Parent=BSGatlas-transcript-30;comment="3'UTR" basu168 BSGatlas UTR 22385 22562 . + . ID=BSGatlas-3'UTR-10;Parent=BSGatlas-transcript-29;comment="3'UTR" basu168 BSGatlas terminator 22385 22429 . + . ID=BSGatlas-terminator-12;Parent=BSGatlas-transcript-28;comment="Based on: Nicolas et al. downshift, Energy: -12.4[kcal/mol]" basu168 BSGatlas UTR 22385 22429 . + . ID=BSGatlas-3'UTR-9;Parent=BSGatlas-transcript-28;comment="3'UTR" basu168 BSGatlas operon 22463 23828 . - . ID=BSGatlas-operon-12;color=#B32496 basu168 BSGatlas transcript 22463 23828 . - . ID=BSGatlas-transcript-31;color=#B37924;Parent=BSGatlas-operon-12,BSGatlas-gene-28,BSGatlas-gene-27;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-21 basu168 BSGatlas exon 22463 23828 . - . ID=BSGatlas-transcript-31_exon;Parent=BSGatlas-transcript-31 basu168 BSGatlas terminator 22463 22504 . - . ID=BSGatlas-terminator-13;Parent=BSGatlas-transcript-31;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.7[kcal/mol]" basu168 BSGatlas UTR 22463 22495 . - . ID=BSGatlas-3'UTR-12;Parent=BSGatlas-transcript-31;comment="3'UTR" basu168 BSGatlas gene 22496 23149 . - . ID=BSGatlas-gene-27;color=#3474B3;Name=dck;locus_tag=BSU00140,BSU_00140;Parent=BSGatlas-operon-12 basu168 BSGatlas CDS 22496 23149 . - 0 ID=BSGatlas-gene-27_transcribed;color=#3474B3;Name=dck;Parent=BSGatlas-transcript-31;comment="deoxyadenosine/deoxycytidine kinase";synonyms="dck,yaaF";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.3 Purine salvage and interconversion";ec="2.7.1.76;2.7.1.74,EC-2.7.1.74;EC-2.7.1.74;EC-2.7.1.76;EC-2.7.1.145";go="GO:0000166 nucleotide binding,GO:0004136 deoxyadenosine kinase activity,GO:0004137 deoxycytidine kinase activity,GO:0005524 ATP binding,GO:0006139 nucleobase-containing compound metabolic process,GO:0006170 dAMP biosynthetic process,GO:0009157 deoxyribonucleoside monophosphate biosynthetic process,GO:0009165 nucleotide biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016773 phosphotransferase activity, alcohol group as acceptor";derives_from=BSGatlas-gene-27 basu168 BSGatlas terminator 22496 22562 . + . ID=BSGatlas-terminator-14;Parent=BSGatlas-transcript-29;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas TSS 22531 22531 . + . ID=BSGatlas-TSS-20;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 23134 23200 . + . ID=BSGatlas-terminator-15;Parent=BSGatlas-transcript-30;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas gene 23146 23769 . - . ID=BSGatlas-gene-28;color=#3474B3;Name=dgk;locus_tag=BSU00150,BSU_00150;Parent=BSGatlas-operon-12 basu168 BSGatlas CDS 23146 23769 . - 0 ID=BSGatlas-gene-28_transcribed;color=#3474B3;Name=dgk;Parent=BSGatlas-transcript-31;comment="deoxyguanosine kinase";synonyms="dgk,yaaG";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.3 Purine salvage and interconversion";ec="2.7.1.113,EC-2.7.1.74;EC-2.7.1.113;EC-2.7.1.145";go="GO:0000166 nucleotide binding,GO:0004138 deoxyguanosine kinase activity,GO:0005524 ATP binding,GO:0006139 nucleobase-containing compound metabolic process,GO:0009157 deoxyribonucleoside monophosphate biosynthetic process,GO:0009165 nucleotide biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016773 phosphotransferase activity, alcohol group as acceptor";derives_from=BSGatlas-gene-28 basu168 BSGatlas UTR 23770 23828 . - . ID=BSGatlas-5'UTR-14;Parent=BSGatlas-transcript-31;comment="5'UTR" basu168 BSGatlas TSS 23828 23828 . - . ID=BSGatlas-TSS-21;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 23841 25810 . - . ID=BSGatlas-operon-13;color=#B32496 basu168 BSGatlas transcript 23841 25810 . - . ID=BSGatlas-transcript-33;color=#B37924;Parent=BSGatlas-operon-13,BSGatlas-gene-30,BSGatlas-gene-29;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-24 basu168 BSGatlas exon 23841 25810 . - . ID=BSGatlas-transcript-33_exon;Parent=BSGatlas-transcript-33 basu168 BSGatlas transcript 23841 25184 . - . ID=BSGatlas-transcript-32;color=#B37924;Parent=BSGatlas-operon-13,BSGatlas-gene-29;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-22 basu168 BSGatlas exon 23841 25184 . - . ID=BSGatlas-transcript-32_exon;Parent=BSGatlas-transcript-32 basu168 BSGatlas terminator 23841 23885 . - . ID=BSGatlas-terminator-16;Parent=BSGatlas-transcript-32,BSGatlas-transcript-33;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas UTR 23841 23867 . - . ID=BSGatlas-3'UTR-13;Parent=BSGatlas-transcript-32,BSGatlas-transcript-33;comment="3'UTR" basu168 BSGatlas gene 23868 25151 . - . ID=BSGatlas-gene-29;color=#3474B3;Name=sleL;locus_tag=BSU00160,BSU_00160;Parent=BSGatlas-operon-13 basu168 BSGatlas CDS 23868 25151 . - 0 ID=BSGatlas-gene-29_transcribed;color=#3474B3;Name=sleL;Parent=BSGatlas-transcript-32,BSGatlas-transcript-33;comment="spore peptidoglycan N-acetylglucosaminidase";synonyms="sleL,yaaH";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.1 Class I,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";ec="3.2.1.-";go="GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0004568 chitinase activity,GO:0005975 carbohydrate metabolic process,GO:0006032 chitin catabolic process,GO:0016998 cell wall macromolecule catabolic process,GO:0031160 spore wall";derives_from=BSGatlas-gene-29 basu168 BSGatlas UTR 25152 25220 . - . ID=BSGatlas-internal_UTR-12;Parent=BSGatlas-transcript-33;comment="internal_UTR" basu168 BSGatlas UTR 25152 25184 . - . ID=BSGatlas-5'UTR-15;Parent=BSGatlas-transcript-32;comment="5'UTR" basu168 BSGatlas TSS 25184 25184 . - . ID=BSGatlas-TSS-22;color=#B32424;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10419957,11717295,17962296" basu168 BSGatlas gene 25221 25766 . - . ID=BSGatlas-gene-30;color=#3474B3;Name=yaaI;locus_tag=BSU00170,BSU_00170;Parent=BSGatlas-operon-13 basu168 BSGatlas CDS 25221 25766 . - 0 ID=BSGatlas-gene-30_transcribed;color=#3474B3;Name=yaaI;Parent=BSGatlas-transcript-33;comment="putative amidase (isochorismatase family)";synonyms="yaaI";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.-.-.-,EC-3.3.2.1";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-30 basu168 BSGatlas operon 25657 26732 . + . ID=BSGatlas-operon-14;color=#FF00CC basu168 BSGatlas transcript 25657 26732 . + . ID=BSGatlas-transcript-34;color=#FF9900;Parent=BSGatlas-operon-14,BSGatlas-gene-31,BSGatlas-gene-32;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-23 basu168 BSGatlas exon 25657 26732 . + . ID=BSGatlas-transcript-34_exon;Parent=BSGatlas-transcript-34 basu168 BSGatlas UTR 25657 25851 . + . ID=BSGatlas-5'UTR-16;Parent=BSGatlas-transcript-34;comment="5'UTR" basu168 BSGatlas TSS 25657 25657 . + . ID=BSGatlas-TSS-23;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 25767 25810 . - . ID=BSGatlas-5'UTR-17;Parent=BSGatlas-transcript-33;comment="5'UTR" basu168 BSGatlas TSS 25810 25810 . - . ID=BSGatlas-TSS-24;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 25852 26337 . + . ID=BSGatlas-gene-31;color=#1E90FF;Name=tadA;locus_tag=BSU00180,BSU_00180;Parent=BSGatlas-operon-14 basu168 BSGatlas CDS 25852 26337 . + 0 ID=BSGatlas-gene-31_transcribed;color=#1E90FF;Name=tadA;Parent=BSGatlas-transcript-34;comment="tRNA specific adenosine A34 deaminase";synonyms="tadA,yaaJ";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.8 tRNA modification and maturation";ec="3.5.4.33,EC-3.5.4";go="GO:0003824 catalytic activity,GO:0008033 tRNA processing,GO:0008270 zinc ion binding,GO:0016787 hydrolase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-31 basu168 BSGatlas UTR 26338 26378 . + . ID=BSGatlas-internal_UTR-13;Parent=BSGatlas-transcript-34;comment="internal_UTR" basu168 BSGatlas gene 26379 26732 . + . ID=BSGatlas-gene-32;color=#CC0000;Name=scr_Bacteria-large-SRP_scr;locus_tag=BSU_misc_RNA_2,BSU_MISC_RNA_2;Parent=BSGatlas-operon-14 basu168 BSGatlas transcript 26379 26732 . + . ID=BSGatlas-transcript-35;color=#FF9900;Parent=BSGatlas-operon-14,BSGatlas-gene-32;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-25 basu168 BSGatlas SRP 26379 26732 . + . ID=BSGatlas-gene-32_transcribed;color=#CC0000;Name=scr_Bacteria-large-SRP_scr;Parent=BSGatlas-transcript-34,BSGatlas-transcript-35;comment="small cytoplasmic RNA (scRNA, 4.5S RNA), signalrecognition particle-like (SRP) component";synonyms="scr";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.9 NcRNA,SW 6.9.3 Small cytoplasmatic RNA";derives_from=BSGatlas-gene-32 basu168 BSGatlas exon 26379 26732 . + . ID=BSGatlas-transcript-35_exon;Parent=BSGatlas-transcript-35 basu168 BSGatlas TSS 26379 26379 . + . ID=BSGatlas-TSS-25;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 2468993" basu168 BSGatlas terminator 26704 26743 . + . ID=BSGatlas-terminator-17;Parent=BSGatlas-transcript-34,BSGatlas-transcript-35;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -12.8[kcal/mol]" basu168 BSGatlas operon 26779 30035 . + . ID=BSGatlas-operon-15;color=#FF00CC basu168 BSGatlas transcript 26779 30035 . + . ID=BSGatlas-transcript-36;color=#FF9900;Parent=BSGatlas-operon-15,BSGatlas-gene-33,BSGatlas-gene-34,BSGatlas-gene-35,BSGatlas-gene-36,BSGatlas-gene-37;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-26 basu168 BSGatlas exon 26779 30035 . + . ID=BSGatlas-transcript-36_exon;Parent=BSGatlas-transcript-36 basu168 BSGatlas UTR 26779 26813 . + . ID=BSGatlas-5'UTR-18;Parent=BSGatlas-transcript-36;comment="5'UTR" basu168 BSGatlas TSS 26779 26779 . + . ID=BSGatlas-TSS-26;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 26814 28505 . + . ID=BSGatlas-gene-33;color=#1E90FF;Name=dnaX;locus_tag=BSU00190,BSU_00190;Parent=BSGatlas-operon-15 basu168 BSGatlas CDS 26814 28505 . + 0 ID=BSGatlas-gene-33_transcribed;color=#1E90FF;Name=dnaX;Parent=BSGatlas-transcript-36;comment="DNA polymerase III subunit tau subunit";synonyms="dna-8132,dnaH,dnaX";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.7.7,EC-2.7.7.7";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003887 DNA-directed DNA polymerase activity,GO:0005524 ATP binding,GO:0006260 DNA replication,GO:0006261 DNA-dependent DNA replication,GO:0009360 DNA polymerase III complex,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-33 basu168 BSGatlas UTR 28383 28528 . + . ID=BSGatlas-5'UTR-19;comment="5'UTR" basu168 BSGatlas TSS 28383 28383 . + . ID=BSGatlas-TSS-27;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 28506 28528 . + . ID=BSGatlas-internal_UTR-14;Parent=BSGatlas-transcript-36;comment="internal_UTR" basu168 BSGatlas gene 28529 28852 . + . ID=BSGatlas-gene-34;color=#1E90FF;Name=ebfC;locus_tag=BSU00200,BSU_00200;Parent=BSGatlas-operon-15 basu168 BSGatlas CDS 28529 28852 . + 0 ID=BSGatlas-gene-34_transcribed;color=#1E90FF;Name=ebfC;Parent=BSGatlas-transcript-36;comment="nucleoid associated protein";synonyms="yaaK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0009295 nucleoid,GO:0043590 bacterial nucleoid";derives_from=BSGatlas-gene-34 basu168 BSGatlas gene 28867 29463 . + . ID=BSGatlas-gene-35;color=#1E90FF;Name=recR;locus_tag=BSU00210,BSU_00210;Parent=BSGatlas-operon-15 basu168 BSGatlas CDS 28867 29463 . + 0 ID=BSGatlas-gene-35_transcribed;color=#1E90FF;Name=recR;Parent=BSGatlas-transcript-36;comment="recA filament-DNA complex stabilisation factor";synonyms="recM,recR";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins";go="GO:0003677 DNA binding,GO:0006281 DNA repair,GO:0006310 DNA recombination,GO:0006974 cellular response to DNA damage stimulus,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-35 basu168 BSGatlas UTR 29464 29480 . + . ID=BSGatlas-internal_UTR-15;Parent=BSGatlas-transcript-36;comment="internal_UTR" basu168 BSGatlas gene 29481 29705 . + . ID=BSGatlas-gene-36;color=#1E90FF;Name=yaaL;locus_tag=BSU00220,BSU_00220;Parent=BSGatlas-operon-15 basu168 BSGatlas CDS 29481 29705 . + 0 ID=BSGatlas-gene-36_transcribed;color=#1E90FF;Name=yaaL;Parent=BSGatlas-transcript-36;comment="conserved protein of unknown function";synonyms="yaaL";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-36 basu168 BSGatlas UTR 29706 29771 . + . ID=BSGatlas-internal_UTR-16;Parent=BSGatlas-transcript-36;comment="internal_UTR" basu168 BSGatlas transcript 29744 30035 . + . ID=BSGatlas-transcript-37;color=#FF9900;Parent=BSGatlas-operon-15,BSGatlas-gene-37;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-28 basu168 BSGatlas exon 29744 30035 . + . ID=BSGatlas-transcript-37_exon;Parent=BSGatlas-transcript-37 basu168 BSGatlas UTR 29744 29771 . + . ID=BSGatlas-5'UTR-20;Parent=BSGatlas-transcript-37;comment="5'UTR" basu168 BSGatlas TSS 29744 29744 . + . ID=BSGatlas-TSS-28;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 1315731,1577688,17962296" basu168 BSGatlas gene 29772 30035 . + . ID=BSGatlas-gene-37;color=#1E90FF;Name=bofA;locus_tag=BSU00230,BSU_00230;Parent=BSGatlas-operon-15 basu168 BSGatlas CDS 29772 30035 . + 0 ID=BSGatlas-gene-37_transcribed;color=#1E90FF;Name=bofA;Parent=BSGatlas-transcript-36,BSGatlas-transcript-37;comment="inhibitor of the pro-sigma(K) processingmachinery";synonyms="bofA";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-37 basu168 BSGatlas operon 30085 35395 . + . ID=BSGatlas-operon-16;color=#FF00CC basu168 BSGatlas transcript 30085 35395 . + . ID=BSGatlas-transcript-38;color=#FF9900;Parent=BSGatlas-operon-16,BSGatlas-gene-38,BSGatlas-gene-39,BSGatlas-gene-40,BSGatlas-gene-41,BSGatlas-gene-42,BSGatlas-gene-43;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-29 basu168 BSGatlas exon 30085 35395 . + . ID=BSGatlas-transcript-38_exon;Parent=BSGatlas-transcript-38 basu168 BSGatlas UTR 30085 30278 . + . ID=BSGatlas-5'UTR-21;Parent=BSGatlas-transcript-38;comment="5'UTR" basu168 BSGatlas TSS 30085 30085 . + . ID=BSGatlas-TSS-29;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,6312418" basu168 BSGatlas transcript 30168 35395 . + . ID=BSGatlas-transcript-39;color=#FF9900;Parent=BSGatlas-operon-16,BSGatlas-gene-38,BSGatlas-gene-39,BSGatlas-gene-40,BSGatlas-gene-41,BSGatlas-gene-42,BSGatlas-gene-43;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-30 basu168 BSGatlas exon 30168 35395 . + . ID=BSGatlas-transcript-39_exon;Parent=BSGatlas-transcript-39 basu168 BSGatlas UTR 30168 30278 . + . ID=BSGatlas-5'UTR-22;Parent=BSGatlas-transcript-39;comment="5'UTR" basu168 BSGatlas TSS 30168 30168 . + . ID=BSGatlas-TSS-30;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 17962296,6312418" basu168 BSGatlas gene 30279 31832 . + . ID=BSGatlas-gene-38;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnA-16S;locus_tag=BSU_rRNA_4,BSU_RRNA_4;Parent=BSGatlas-operon-16 basu168 BSGatlas rRNA 30279 31832 . + . ID=BSGatlas-gene-38_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnA-16S;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="ribosomal RNA-16S";synonyms="rrnA-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-38 basu168 BSGatlas UTR 31833 31930 . + . ID=BSGatlas-internal_UTR-17;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="internal_UTR" basu168 BSGatlas gene 31931 32008 . + . ID=BSGatlas-gene-39;color=#FFFF00;Name=trnA-Ile;locus_tag=BSU_tRNA_8,BSU_TRNA_8;Parent=BSGatlas-operon-16 basu168 BSGatlas tRNA 31931 32008 . + . ID=BSGatlas-gene-39_transcribed;color=#FFFF00;Name=trnA-Ile;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="tRNA-Ile";synonyms="trnA-Ile";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-39 basu168 BSGatlas gene 32019 32095 . + . ID=BSGatlas-gene-40;color=#FFFF00;Name=trnA-Ala;locus_tag=BSU_tRNA_9,BSU_TRNA_9;Parent=BSGatlas-operon-16 basu168 BSGatlas tRNA 32019 32095 . + . ID=BSGatlas-gene-40_transcribed;color=#FFFF00;Name=trnA-Ala;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="tRNA-Ala";synonyms="trnA-Ala";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-40 basu168 BSGatlas UTR 32096 32173 . + . ID=BSGatlas-internal_UTR-18;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="internal_UTR" basu168 BSGatlas gene 32174 35104 . + . ID=BSGatlas-gene-41;color=#CC33FF;Name=LSU-rRNA-archaea_rrnA-23S;locus_tag=BSU_rRNA_5,BSU_RRNA_5;Parent=BSGatlas-operon-16 basu168 BSGatlas rRNA 32174 35104 . + . ID=BSGatlas-gene-41_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnA-23S;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="ribosomal RNA-23S";synonyms="rrnA-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-41 basu168 BSGatlas UTR 35105 35162 . + . ID=BSGatlas-internal_UTR-19;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="internal_UTR" basu168 BSGatlas gene 35163 35230 . + . ID=BSGatlas-gene-42;color=#00FF00;Name=Bacillaceae-1;Parent=BSGatlas-operon-16 basu168 BSGatlas sRNA 35163 35230 . + . ID=BSGatlas-gene-42_transcribed;color=#00FF00;Name=Bacillaceae-1;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;derives_from=BSGatlas-gene-42 basu168 BSGatlas gene 35236 35355 . + . ID=BSGatlas-gene-43;color=#CC33FF;Name=5S-rRNA_rrnA-5S;locus_tag=BSU_rRNA_26,BSU_RRNA_26;Parent=BSGatlas-operon-16 basu168 BSGatlas rRNA 35236 35355 . + . ID=BSGatlas-gene-43_transcribed;color=#CC33FF;Name=5S-rRNA_rrnA-5S;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="ribosomal RNA-5S";synonyms="rrnA-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-43 basu168 BSGatlas UTR 35356 35395 . + . ID=BSGatlas-3'UTR-14;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="3'UTR" basu168 BSGatlas terminator 35357 35395 . + . ID=BSGatlas-terminator-18;Parent=BSGatlas-transcript-38,BSGatlas-transcript-39;comment="Based on: BsubCyc,DBTBS, Energy: -14.2[kcal/mol]" basu168 BSGatlas operon 35460 35753 . + . ID=BSGatlas-operon-17;color=#FF00CC basu168 BSGatlas transcript 35460 35753 . + . ID=BSGatlas-transcript-40;color=#FF9900;Parent=BSGatlas-operon-17,BSGatlas-gene-44;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-31 basu168 BSGatlas exon 35460 35753 . + . ID=BSGatlas-transcript-40_exon;Parent=BSGatlas-transcript-40 basu168 BSGatlas UTR 35460 35530 . + . ID=BSGatlas-5'UTR-23;Parent=BSGatlas-transcript-40;comment="5'UTR" basu168 BSGatlas TSS 35460 35460 . + . ID=BSGatlas-TSS-31;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 35531 35725 . + . ID=BSGatlas-gene-44;color=#1E90FF;Name=csfB;locus_tag=BSU00240,BSU_00240;Parent=BSGatlas-operon-17 basu168 BSGatlas CDS 35531 35725 . + 0 ID=BSGatlas-gene-44_transcribed;color=#1E90FF;Name=csfB;Parent=BSGatlas-transcript-40;comment="forespore-specific anti-sigma factor";synonyms="csfB,gin,yaaM";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-44 basu168 BSGatlas terminator 35720 35753 . + . ID=BSGatlas-terminator-19;Parent=BSGatlas-transcript-40;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -9.8[kcal/mol]" basu168 BSGatlas UTR 35726 35753 . + . ID=BSGatlas-3'UTR-15;Parent=BSGatlas-transcript-40;comment="3'UTR" basu168 BSGatlas operon 35797 45191 . + . ID=BSGatlas-operon-18;color=#FF00CC basu168 BSGatlas transcript 35797 45191 . + . ID=BSGatlas-transcript-44;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-45,BSGatlas-gene-46,BSGatlas-gene-47,BSGatlas-gene-48,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-32 basu168 BSGatlas exon 35797 45191 . + . ID=BSGatlas-transcript-44_exon;Parent=BSGatlas-transcript-44 basu168 BSGatlas transcript 35797 44799 . + . ID=BSGatlas-transcript-43;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-45,BSGatlas-gene-46,BSGatlas-gene-47,BSGatlas-gene-48,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-32 basu168 BSGatlas exon 35797 44799 . + . ID=BSGatlas-transcript-43_exon;Parent=BSGatlas-transcript-43 basu168 BSGatlas transcript 35797 39162 . + . ID=BSGatlas-transcript-42;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-45,BSGatlas-gene-46,BSGatlas-gene-47;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-32 basu168 BSGatlas exon 35797 39162 . + . ID=BSGatlas-transcript-42_exon;Parent=BSGatlas-transcript-42 basu168 BSGatlas transcript 35797 37638 . + . ID=BSGatlas-transcript-41;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-45,BSGatlas-gene-46;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-32 basu168 BSGatlas exon 35797 37638 . + . ID=BSGatlas-transcript-41_exon;Parent=BSGatlas-transcript-41 basu168 BSGatlas UTR 35797 35844 . + . ID=BSGatlas-5'UTR-24;Parent=BSGatlas-transcript-41,BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="5'UTR" basu168 BSGatlas TSS 35797 35797 . + . ID=BSGatlas-TSS-32;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 35845 36459 . + . ID=BSGatlas-gene-45;color=#1E90FF;Name=xpaC;locus_tag=BSU00250,BSU_00250;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 35845 36459 . + 0 ID=BSGatlas-gene-45_transcribed;color=#1E90FF;Name=xpaC;Parent=BSGatlas-transcript-41,BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="putative phosphatase";synonyms="xpaC";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-45 basu168 BSGatlas UTR 36460 36477 . + . ID=BSGatlas-internal_UTR-20;Parent=BSGatlas-transcript-41,BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="internal_UTR" basu168 BSGatlas gene 36478 37638 . + . ID=BSGatlas-gene-46;color=#1E90FF;Name=yaaN;locus_tag=BSU00260,BSU_00260;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 36478 37638 . + 0 ID=BSGatlas-gene-46_transcribed;color=#1E90FF;Name=yaaN;Parent=BSGatlas-transcript-41,BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="putative toxic compound resistance protein";synonyms="yaaN";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";derives_from=BSGatlas-gene-46 basu168 BSGatlas UTR 37639 37719 . + . ID=BSGatlas-internal_UTR-21;Parent=BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="internal_UTR" basu168 BSGatlas gene 37720 39162 . + . ID=BSGatlas-gene-47;color=#1E90FF;Name=yaaO;locus_tag=BSU00270,BSU_00270;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 37720 39162 . + 0 ID=BSGatlas-gene-47_transcribed;color=#1E90FF;Name=yaaO;Parent=BSGatlas-transcript-42,BSGatlas-transcript-43,BSGatlas-transcript-44;comment="putative decarboxylase";synonyms="yaaO";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.14 Translation factor modification and maturation,SW 3.3.4 Protein modification,SW 3.3.4.8 Protein modification/ other,SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="4.1.1.-,4.1.1.19,EC-4.1.1.18";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016829 lyase activity,GO:0016831 carboxy-lyase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-47 basu168 BSGatlas transcript 39112 45191 . + . ID=BSGatlas-transcript-46;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-48,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-33 basu168 BSGatlas exon 39112 45191 . + . ID=BSGatlas-transcript-46_exon;Parent=BSGatlas-transcript-46 basu168 BSGatlas transcript 39112 44799 . + . ID=BSGatlas-transcript-45;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-48,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-33 basu168 BSGatlas exon 39112 44799 . + . ID=BSGatlas-transcript-45_exon;Parent=BSGatlas-transcript-45 basu168 BSGatlas UTR 39112 39158 . + . ID=BSGatlas-5'UTR-25;Parent=BSGatlas-transcript-45,BSGatlas-transcript-46;comment="5'UTR" basu168 BSGatlas TSS 39112 39112 . + . ID=BSGatlas-TSS-33;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 39159 39797 . + . ID=BSGatlas-gene-48;color=#1E90FF;Name=tmk;locus_tag=BSU00280,BSU_00280;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 39159 39797 . + 0 ID=BSGatlas-gene-48_transcribed;color=#1E90FF;Name=tmk;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46;comment="thymidylate kinase";synonyms="tmk,yaaP";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.4 Biosynthesis/ acquisition of pyrimidine nucleotides,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.4.9,EC-2.7.4.12;EC-2.7.4.13;EC-2.7.4.9";go="GO:0000166 nucleotide binding,GO:0004798 thymidylate kinase activity,GO:0005524 ATP binding,GO:0006233 dTDP biosynthetic process,GO:0006235 dTTP biosynthetic process,GO:0009165 nucleotide biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0046939 nucleotide phosphorylation";derives_from=BSGatlas-gene-48 basu168 BSGatlas UTR 39798 39870 . + . ID=BSGatlas-internal_UTR-22;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46;comment="internal_UTR" basu168 BSGatlas transcript 39823 45191 . + . ID=BSGatlas-transcript-48;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-34 basu168 BSGatlas exon 39823 45191 . + . ID=BSGatlas-transcript-48_exon;Parent=BSGatlas-transcript-48 basu168 BSGatlas transcript 39823 44799 . + . ID=BSGatlas-transcript-47;color=#FF9900;Parent=BSGatlas-operon-18,BSGatlas-gene-49,BSGatlas-gene-50,BSGatlas-gene-51,BSGatlas-gene-52,BSGatlas-gene-53,BSGatlas-gene-54,BSGatlas-gene-55,BSGatlas-gene-56;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-34 basu168 BSGatlas exon 39823 44799 . + . ID=BSGatlas-transcript-47_exon;Parent=BSGatlas-transcript-47 basu168 BSGatlas UTR 39823 39870 . + . ID=BSGatlas-5'UTR-26;Parent=BSGatlas-transcript-47,BSGatlas-transcript-48;comment="5'UTR" basu168 BSGatlas TSS 39823 39823 . + . ID=BSGatlas-TSS-34;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 39871 40200 . + . ID=BSGatlas-gene-49;color=#1E90FF;Name=darA;locus_tag=BSU00290,BSU_00290;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 39871 40200 . + 0 ID=BSGatlas-gene-49_transcribed;color=#1E90FF;Name=darA;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="signal transduction receptor, cyclic di-AMPbinding";synonyms="darA,yaaQ";subtiwiki_category="SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.1 Targets of c-di-AMP,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0032559 adenyl ribonucleotide binding";derives_from=BSGatlas-gene-49 basu168 BSGatlas gene 40213 40653 . + . ID=BSGatlas-gene-50;color=#1E90FF;Name=yaaR;locus_tag=BSU00300,BSU_00300;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 40213 40653 . + 0 ID=BSGatlas-gene-50_transcribed;color=#1E90FF;Name=yaaR;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="conserved hypothetical protein";synonyms="yaaR";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-50 basu168 BSGatlas gene 40665 41654 . + . ID=BSGatlas-gene-51;color=#1E90FF;Name=holB;locus_tag=BSU00310,BSU_00310;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 40665 41654 . + 0 ID=BSGatlas-gene-51_transcribed;color=#1E90FF;Name=holB;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="DNA polymerase III clamp loader delta' subunit";synonyms="holB,yaaS";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.7.7,EC-2.7.7.7";go="GO:0003887 DNA-directed DNA polymerase activity,GO:0006260 DNA replication,GO:0006261 DNA-dependent DNA replication,GO:0008408 3'-5' exonuclease activity,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0090305 nucleic acid phosphodiester bond hydrolysis";derives_from=BSGatlas-gene-51 basu168 BSGatlas gene 41657 42484 . + . ID=BSGatlas-gene-52;color=#1E90FF;Name=ricT;locus_tag=BSU00320,BSU_00320;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 41657 42484 . + 0 ID=BSGatlas-gene-52_transcribed;color=#1E90FF;Name=ricT;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="subunit of a sporulation, competence and biofilmformation regulatory complex of RNaseY (RicAFT complex /FAD / two [4Fe-4S]2+)";synonyms="ricT,yaaT";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.7 phosphorelay,SW 3.4.7.6 Other protein controlling the activity of the phosphorelay,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay,SW 4.2.2.6 Other protein controlling the activity of the phosphorelay";go="GO:0005737 cytoplasm,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0042173 regulation of sporulation resulting in formation of a cellular spore,GO:0045304 regulation of establishment of competence for transformation,GO:1900190 regulation of single-species biofilm formation";derives_from=BSGatlas-gene-52 basu168 BSGatlas gene 42499 42858 . + . ID=BSGatlas-gene-53;color=#1E90FF;Name=dnaH;locus_tag=BSU00330,BSU_00330;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 42499 42858 . + 0 ID=BSGatlas-gene-53_transcribed;color=#1E90FF;Name=dnaH;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="subunit of the DNA replication complex";synonyms="yabA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.6 Phosphorylation on a Thr residue";go="GO:0005515 protein binding,GO:0006260 DNA replication,GO:0008270 zinc ion binding,GO:0032297 negative regulation of DNA-dependent DNA replication initiation,GO:0042802 identical protein binding,GO:0051289 protein homotetramerization";derives_from=BSGatlas-gene-53 basu168 BSGatlas UTR 42859 42916 . + . ID=BSGatlas-internal_UTR-23;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="internal_UTR" basu168 BSGatlas gene 42917 43660 . + . ID=BSGatlas-gene-54;color=#1E90FF;Name=trmNF;locus_tag=BSU00340,BSU_00340;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 42917 43660 . + 0 ID=BSGatlas-gene-54_transcribed;color=#1E90FF;Name=trmNF;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="tRNA1(Val) (adenine(37)-N6)-methyltransferase";synonyms="yabB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="2.1.1.223";derives_from=BSGatlas-gene-54 basu168 BSGatlas gene 43647 43946 . + . ID=BSGatlas-gene-55;color=#1E90FF;Name=yazA;locus_tag=BSU00350,BSU_00350;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 43647 43946 . + 0 ID=BSGatlas-gene-55_transcribed;color=#1E90FF;Name=yazA;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="putative UvrC-Intron-type (URI) endonuclease";synonyms="yazA";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-55 basu168 BSGatlas gene 43921 44799 . + . ID=BSGatlas-gene-56;color=#1E90FF;Name=rsmI;locus_tag=BSU00360,BSU_00360;Parent=BSGatlas-operon-18 basu168 BSGatlas CDS 43921 44799 . + 0 ID=BSGatlas-gene-56_transcribed;color=#1E90FF;Name=rsmI;Parent=BSGatlas-transcript-43,BSGatlas-transcript-44,BSGatlas-transcript-45,BSGatlas-transcript-46,BSGatlas-transcript-47,BSGatlas-transcript-48;comment="16S rRNA 2'-O-ribose C1402 methyltransferase";synonyms="yabC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.3 rRNA modification and maturation/ based on similarity";ec="2.1.1.198";go="GO:0005737 cytoplasm,GO:0006364 rRNA processing,GO:0008152 metabolic process,GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-56 basu168 BSGatlas terminator 44750 44794 . + . ID=BSGatlas-terminator-20;Parent=BSGatlas-transcript-43,BSGatlas-transcript-45,BSGatlas-transcript-47;comment="Based on: Nicolas et al. downshift, Energy: -10.2[kcal/mol]" basu168 BSGatlas operon 44790 46389 . - . ID=BSGatlas-operon-19;color=#B32496 basu168 BSGatlas transcript 44790 46389 . - . ID=BSGatlas-transcript-52;color=#B37924;Parent=BSGatlas-operon-19,BSGatlas-gene-57;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-39 basu168 BSGatlas exon 44790 46389 . - . ID=BSGatlas-transcript-52_exon;Parent=BSGatlas-transcript-52 basu168 BSGatlas transcript 44790 45399 . - . ID=BSGatlas-transcript-51;color=#B37924;Parent=BSGatlas-operon-19,BSGatlas-gene-57;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-37 basu168 BSGatlas exon 44790 45399 . - . ID=BSGatlas-transcript-51_exon;Parent=BSGatlas-transcript-51 basu168 BSGatlas transcript 44790 45221 . - . ID=BSGatlas-transcript-50;color=#B37924;Parent=BSGatlas-operon-19,BSGatlas-gene-57;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-36 basu168 BSGatlas exon 44790 45221 . - . ID=BSGatlas-transcript-50_exon;Parent=BSGatlas-transcript-50 basu168 BSGatlas transcript 44790 45207 . - . ID=BSGatlas-transcript-49;color=#B37924;Parent=BSGatlas-operon-19,BSGatlas-gene-57;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-35 basu168 BSGatlas exon 44790 45207 . - . ID=BSGatlas-transcript-49_exon;Parent=BSGatlas-transcript-49 basu168 BSGatlas UTR 44790 44847 . - . ID=BSGatlas-3'UTR-16;Parent=BSGatlas-transcript-49,BSGatlas-transcript-50,BSGatlas-transcript-51,BSGatlas-transcript-52;comment="3'UTR" basu168 BSGatlas terminator 44790 44833 . - . ID=BSGatlas-terminator-21;Parent=BSGatlas-transcript-49,BSGatlas-transcript-50,BSGatlas-transcript-51,BSGatlas-transcript-52;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12.8[kcal/mol]" basu168 BSGatlas UTR 44800 45191 . + . ID=BSGatlas-3'UTR-17;Parent=BSGatlas-transcript-44,BSGatlas-transcript-46,BSGatlas-transcript-48;comment="3'UTR" basu168 BSGatlas gene 44848 45138 . - . ID=BSGatlas-gene-57;color=#3474B3;Name=abrB;locus_tag=BSU00370,BSU_00370;Parent=BSGatlas-operon-19 basu168 BSGatlas CDS 44848 45138 . - 0 ID=BSGatlas-gene-57_transcribed;color=#3474B3;Name=abrB;Parent=BSGatlas-transcript-49,BSGatlas-transcript-50,BSGatlas-transcript-51,BSGatlas-transcript-52;comment="transcriptional regulator for transition stategenes (AbrB-SurF)";synonyms="abrB,cpsX,tolB";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.6 Transition state regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0043937 regulation of sporulation";derives_from=BSGatlas-gene-57 basu168 BSGatlas UTR 45139 46389 . - . ID=BSGatlas-5'UTR-30;Parent=BSGatlas-transcript-52;comment="5'UTR" basu168 BSGatlas UTR 45139 45399 . - . ID=BSGatlas-5'UTR-29;Parent=BSGatlas-transcript-51;comment="5'UTR" basu168 BSGatlas UTR 45139 45221 . - . ID=BSGatlas-5'UTR-28;Parent=BSGatlas-transcript-50;comment="5'UTR" basu168 BSGatlas UTR 45139 45207 . - . ID=BSGatlas-5'UTR-27;Parent=BSGatlas-transcript-49;comment="5'UTR" basu168 BSGatlas terminator 45147 45191 . + . ID=BSGatlas-terminator-22;Parent=BSGatlas-transcript-44,BSGatlas-transcript-46,BSGatlas-transcript-48;comment="Based on: Nicolas et al. downshift, Energy: -14.4[kcal/mol]" basu168 BSGatlas TSS 45207 45207 . - . ID=BSGatlas-TSS-35;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,3145384" basu168 BSGatlas TSS 45221 45221 . - . ID=BSGatlas-TSS-36;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,3145384" basu168 BSGatlas TSS 45399 45399 . - . ID=BSGatlas-TSS-37;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 45524 48473 . + . ID=BSGatlas-operon-20;color=#FF00CC basu168 BSGatlas transcript 45524 48473 . + . ID=BSGatlas-transcript-55;color=#FF9900;Parent=BSGatlas-operon-20,BSGatlas-gene-59,BSGatlas-gene-61;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-38 basu168 BSGatlas exon 45524 48473 . + . ID=BSGatlas-transcript-55_exon;Parent=BSGatlas-transcript-55 basu168 BSGatlas transcript 45524 47686 . + . ID=BSGatlas-transcript-54;color=#FF9900;Parent=BSGatlas-operon-20,BSGatlas-gene-59;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-38 basu168 BSGatlas exon 45524 47686 . + . ID=BSGatlas-transcript-54_exon;Parent=BSGatlas-transcript-54 basu168 BSGatlas transcript 45524 47627 . + . ID=BSGatlas-transcript-53;color=#FF9900;Parent=BSGatlas-operon-20,BSGatlas-gene-59;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-38 basu168 BSGatlas exon 45524 47627 . + . ID=BSGatlas-transcript-53_exon;Parent=BSGatlas-transcript-53 basu168 BSGatlas UTR 45524 45632 . + . ID=BSGatlas-5'UTR-31;Parent=BSGatlas-transcript-53,BSGatlas-transcript-54,BSGatlas-transcript-55;comment="5'UTR" basu168 BSGatlas TSS 45524 45524 . + . ID=BSGatlas-TSS-38;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 45536 45607 . + . ID=BSGatlas-gene-58;color=#999999;Name=novel basu168 BSGatlas riboswitch 45536 45607 . + . ID=BSGatlas-gene-58_transcribed;color=#999999;Name=novel;derives_from=BSGatlas-gene-58 basu168 BSGatlas gene 45633 47627 . + . ID=BSGatlas-gene-59;color=#1E90FF;Name=metS;locus_tag=BSU00380,BSU_00380;Parent=BSGatlas-operon-20 basu168 BSGatlas CDS 45633 47627 . + 0 ID=BSGatlas-gene-59_transcribed;color=#1E90FF;Name=metS;Parent=BSGatlas-transcript-53,BSGatlas-transcript-54,BSGatlas-transcript-55;comment="methionyl-tRNA synthetase";synonyms="metS";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.10 Aminoacyl-tRNA synthetases,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";ec="6.1.1.10,EC-6.1.1.10";go="GO:0000049 tRNA binding,GO:0000166 nucleotide binding,GO:0003723 RNA binding,GO:0004812 aminoacyl-tRNA ligase activity,GO:0004825 methionine-tRNA ligase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006418 tRNA aminoacylation for protein translation,GO:0006431 methionyl-tRNA aminoacylation,GO:0016874 ligase activity";derives_from=BSGatlas-gene-59 basu168 BSGatlas TSS 46389 46389 . - . ID=BSGatlas-TSS-39;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 47589 47633 . + . ID=BSGatlas-terminator-23;Parent=BSGatlas-transcript-53;comment="Based on: Nicolas et al. downshift, Energy: -14.4[kcal/mol]" basu168 BSGatlas UTR 47628 47705 . + . ID=BSGatlas-internal_UTR-24;Parent=BSGatlas-transcript-55;comment="internal_UTR" basu168 BSGatlas UTR 47628 47686 . + . ID=BSGatlas-3'UTR-18;Parent=BSGatlas-transcript-54;comment="3'UTR" basu168 BSGatlas terminator 47635 47686 . + . ID=BSGatlas-terminator-24;Parent=BSGatlas-transcript-54;comment="Based on: BsubCyc,DBTBS, Energy: -13.4[kcal/mol]" basu168 BSGatlas operon 47673 50019 . - . ID=BSGatlas-operon-21;color=#B32496 basu168 BSGatlas gene 47673 50019 . - . ID=BSGatlas-gene-60;color=#8F1D1D;Name=S25;locus_tag=new_47673_50019_c;Parent=BSGatlas-operon-21 basu168 BSGatlas transcript 47673 50019 . - . ID=BSGatlas-transcript-56;color=#B37924;Parent=BSGatlas-operon-21,BSGatlas-gene-60;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-44 basu168 BSGatlas ncRNA 47673 50019 . - . ID=BSGatlas-gene-60_transcribed;color=#8F1D1D;Name=S25;Parent=BSGatlas-transcript-56;synonyms="S25";derives_from=BSGatlas-gene-60 basu168 BSGatlas exon 47673 50019 . - . ID=BSGatlas-transcript-56_exon;Parent=BSGatlas-transcript-56 basu168 BSGatlas gene 47706 48473 . + . ID=BSGatlas-gene-61;color=#1E90FF;Name=dayD;locus_tag=BSU00390,BSU_00390;Parent=BSGatlas-operon-20 basu168 BSGatlas CDS 47706 48473 . + 0 ID=BSGatlas-gene-61_transcribed;color=#1E90FF;Name=dayD;Parent=BSGatlas-transcript-55;comment="D-amino acyl-tRNA deacylase";synonyms="yabD";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="3.1.-.-";go="GO:0000737 DNA catabolic process, endonucleolytic,GO:0004518 nuclease activity,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters,GO:0046872 metal ion binding,GO:0090305 nucleic acid phosphodiester bond hydrolysis";derives_from=BSGatlas-gene-61 basu168 BSGatlas operon 48556 49994 . + . ID=BSGatlas-operon-22;color=#FF00CC basu168 BSGatlas transcript 48556 49994 . + . ID=BSGatlas-transcript-58;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-40 basu168 BSGatlas exon 48556 49994 . + . ID=BSGatlas-transcript-58_exon;Parent=BSGatlas-transcript-58 basu168 BSGatlas transcript 48556 49942 . + . ID=BSGatlas-transcript-57;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-40 basu168 BSGatlas exon 48556 49942 . + . ID=BSGatlas-transcript-57_exon;Parent=BSGatlas-transcript-57 basu168 BSGatlas UTR 48556 48628 . + . ID=BSGatlas-5'UTR-32;Parent=BSGatlas-transcript-57,BSGatlas-transcript-58;comment="5'UTR" basu168 BSGatlas TSS 48556 48556 . + . ID=BSGatlas-TSS-40;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 48616 48616 . + . ID=BSGatlas-TSS-41;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 48629 49994 . + . ID=BSGatlas-transcript-61;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-41 basu168 BSGatlas transcript 48629 49994 . + . ID=BSGatlas-transcript-62;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-42 basu168 BSGatlas exon 48629 49994 . + . ID=BSGatlas-transcript-61_exon;Parent=BSGatlas-transcript-61 basu168 BSGatlas exon 48629 49994 . + . ID=BSGatlas-transcript-62_exon;Parent=BSGatlas-transcript-62 basu168 BSGatlas gene 48629 49942 . + . ID=BSGatlas-gene-62;color=#1E90FF;Name=yabE;locus_tag=BSU00400,BSU_00400;Parent=BSGatlas-operon-22 basu168 BSGatlas transcript 48629 49942 . + . ID=BSGatlas-transcript-59;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-41 basu168 BSGatlas transcript 48629 49942 . + . ID=BSGatlas-transcript-60;color=#FF9900;Parent=BSGatlas-operon-22,BSGatlas-gene-62;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-42 basu168 BSGatlas CDS 48629 49942 . + 0 ID=BSGatlas-gene-62_transcribed;color=#1E90FF;Name=yabE;Parent=BSGatlas-transcript-57,BSGatlas-transcript-58,BSGatlas-transcript-59,BSGatlas-transcript-60,BSGatlas-transcript-61,BSGatlas-transcript-62;comment="putative cell wall shaping enzyme";synonyms="yabE";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.6 Cell wall/ other/ based on similarity";go="GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0009254 peptidoglycan turnover,GO:0019867 outer membrane";derives_from=BSGatlas-gene-62 basu168 BSGatlas exon 48629 49942 . + . ID=BSGatlas-transcript-59_exon;Parent=BSGatlas-transcript-59 basu168 BSGatlas exon 48629 49942 . + . ID=BSGatlas-transcript-60_exon;Parent=BSGatlas-transcript-60 basu168 BSGatlas TSS 48667 48667 . + . ID=BSGatlas-TSS-42;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 49881 49925 . + . ID=BSGatlas-terminator-25;Parent=BSGatlas-transcript-57,BSGatlas-transcript-59,BSGatlas-transcript-60;comment="Based on: Nicolas et al. downshift, Energy: -11.3[kcal/mol]" basu168 BSGatlas UTR 49943 49994 . + . ID=BSGatlas-3'UTR-19;Parent=BSGatlas-transcript-58,BSGatlas-transcript-61,BSGatlas-transcript-62;comment="3'UTR" basu168 BSGatlas terminator 49954 49994 . + . ID=BSGatlas-terminator-26;Parent=BSGatlas-transcript-58,BSGatlas-transcript-61,BSGatlas-transcript-62;comment="Based on: BsubCyc,DBTBS, Energy: -14.8[kcal/mol]" basu168 BSGatlas operon 49987 51539 . + . ID=BSGatlas-operon-23;color=#FF00CC basu168 BSGatlas transcript 49987 51539 . + . ID=BSGatlas-transcript-63;color=#FF9900;Parent=BSGatlas-operon-23,BSGatlas-gene-63,BSGatlas-gene-64;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-43 basu168 BSGatlas exon 49987 51539 . + . ID=BSGatlas-transcript-63_exon;Parent=BSGatlas-transcript-63 basu168 BSGatlas UTR 49987 50086 . + . ID=BSGatlas-5'UTR-33;Parent=BSGatlas-transcript-63;comment="5'UTR" basu168 BSGatlas TSS 49987 49987 . + . ID=BSGatlas-TSS-43;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 50027 50027 . - . ID=BSGatlas-TSS-44;color=#B32424;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 50087 51539 . + . ID=BSGatlas-transcript-64;color=#FF9900;Parent=BSGatlas-operon-23,BSGatlas-gene-63,BSGatlas-gene-64;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-45 basu168 BSGatlas exon 50087 51539 . + . ID=BSGatlas-transcript-64_exon;Parent=BSGatlas-transcript-64 basu168 BSGatlas gene 50087 50647 . + . ID=BSGatlas-gene-63;color=#1E90FF;Name=rnmV;locus_tag=BSU00410,BSU_00410;Parent=BSGatlas-operon-23 basu168 BSGatlas CDS 50087 50647 . + 0 ID=BSGatlas-gene-63_transcribed;color=#1E90FF;Name=rnmV;Parent=BSGatlas-transcript-63,BSGatlas-transcript-64;comment="ribonuclease M5";synonyms="rnmV,yabF";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.4 RNases,SW 3.2.4.2 Endoribonucleases,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.2 rRNA modification and maturation";ec="3.1.26.8,EC-3.1.26.8";go="GO:0000287 magnesium ion binding,GO:0003723 RNA binding,GO:0004518 nuclease activity,GO:0004519 endonuclease activity,GO:0005737 cytoplasm,GO:0006364 rRNA processing,GO:0016787 hydrolase activity,GO:0019843 rRNA binding,GO:0042254 ribosome biogenesis,GO:0043822 ribonuclease M5 activity,GO:0046872 metal ion binding,GO:0090305 nucleic acid phosphodiester bond hydrolysis,GO:0090501 RNA phosphodiester bond hydrolysis,GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic";derives_from=BSGatlas-gene-63 basu168 BSGatlas TSS 50097 50097 . + . ID=BSGatlas-TSS-45;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 50640 51518 . + . ID=BSGatlas-gene-64;color=#1E90FF;Name=rsmA;locus_tag=BSU00420,BSU_00420;Parent=BSGatlas-operon-23 basu168 BSGatlas CDS 50640 51518 . + 0 ID=BSGatlas-gene-64_transcribed;color=#1E90FF;Name=rsmA;Parent=BSGatlas-transcript-63,BSGatlas-transcript-64;comment="dimethyladenosine 16S ribosomal RNA transferase";synonyms="ksgA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.2 rRNA modification and maturation";ec="2.1.1.-,EC-2.1.1.182";go="GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity,GO:0003723 RNA binding,GO:0005737 cytoplasm,GO:0006364 rRNA processing,GO:0008168 methyltransferase activity,GO:0016433 rRNA (adenine) methyltransferase activity,GO:0016740 transferase activity,GO:0031167 rRNA methylation,GO:0032259 methylation,GO:0052908 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity";derives_from=BSGatlas-gene-64 basu168 BSGatlas terminator 51502 51539 . + . ID=BSGatlas-terminator-27;Parent=BSGatlas-transcript-63,BSGatlas-transcript-64;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -10.4[kcal/mol]" basu168 BSGatlas UTR 51519 51539 . + . ID=BSGatlas-3'UTR-20;Parent=BSGatlas-transcript-63,BSGatlas-transcript-64;comment="3'UTR" basu168 BSGatlas operon 51571 52600 . + . ID=BSGatlas-operon-24;color=#FF00CC basu168 BSGatlas transcript 51571 52600 . + . ID=BSGatlas-transcript-65;color=#FF9900;Parent=BSGatlas-operon-24,BSGatlas-gene-65;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-46 basu168 BSGatlas exon 51571 52600 . + . ID=BSGatlas-transcript-65_exon;Parent=BSGatlas-transcript-65 basu168 BSGatlas UTR 51571 51679 . + . ID=BSGatlas-5'UTR-34;Parent=BSGatlas-transcript-65;comment="5'UTR" basu168 BSGatlas TSS 51571 51571 . + . ID=BSGatlas-TSS-46;color=#FF0000;comment="Simga: K, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 10714992,17962296" basu168 BSGatlas gene 51680 52552 . + . ID=BSGatlas-gene-65;color=#1E90FF;Name=prtG;locus_tag=BSU00430,BSU_00430;Parent=BSGatlas-operon-24 basu168 BSGatlas CDS 51680 52552 . + 0 ID=BSGatlas-gene-65_transcribed;color=#1E90FF;Name=prtG;Parent=BSGatlas-transcript-65;comment="sporulation-specific protease";synonyms="yabG";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.4 Additional proteins involved in proteolysis,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.8 Not yet assigned,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0043593 endospore coat";derives_from=BSGatlas-gene-65 basu168 BSGatlas UTR 52553 52600 . + . ID=BSGatlas-3'UTR-21;Parent=BSGatlas-transcript-65;comment="3'UTR" basu168 BSGatlas terminator 52558 52600 . + . ID=BSGatlas-terminator-28;Parent=BSGatlas-transcript-65;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.1[kcal/mol]" basu168 BSGatlas operon 52649 53064 . + . ID=BSGatlas-operon-25;color=#FF00CC basu168 BSGatlas transcript 52649 53064 . + . ID=BSGatlas-transcript-67;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-47 basu168 BSGatlas exon 52649 53064 . + . ID=BSGatlas-transcript-67_exon;Parent=BSGatlas-transcript-67 basu168 BSGatlas transcript 52649 53023 . + . ID=BSGatlas-transcript-66;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-47 basu168 BSGatlas exon 52649 53023 . + . ID=BSGatlas-transcript-66_exon;Parent=BSGatlas-transcript-66 basu168 BSGatlas UTR 52649 52762 . + . ID=BSGatlas-5'UTR-35;Parent=BSGatlas-transcript-66,BSGatlas-transcript-67;comment="5'UTR" basu168 BSGatlas TSS 52649 52649 . + . ID=BSGatlas-TSS-47;color=#FF0000;comment="Simga: ?, Resolution: 33, Based on: Nicolas et al 5' UTR start, PubMed: " basu168 BSGatlas transcript 52721 53064 . + . ID=BSGatlas-transcript-69;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-48 basu168 BSGatlas exon 52721 53064 . + . ID=BSGatlas-transcript-69_exon;Parent=BSGatlas-transcript-69 basu168 BSGatlas transcript 52721 53023 . + . ID=BSGatlas-transcript-68;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-48 basu168 BSGatlas exon 52721 53023 . + . ID=BSGatlas-transcript-68_exon;Parent=BSGatlas-transcript-68 basu168 BSGatlas UTR 52721 52762 . + . ID=BSGatlas-5'UTR-36;Parent=BSGatlas-transcript-68,BSGatlas-transcript-69;comment="5'UTR" basu168 BSGatlas TSS 52721 52721 . + . ID=BSGatlas-TSS-48;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 52747 52747 . - . ID=BSGatlas-TSS-49;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 52748 53064 . + . ID=BSGatlas-transcript-71;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-50 basu168 BSGatlas exon 52748 53064 . + . ID=BSGatlas-transcript-71_exon;Parent=BSGatlas-transcript-71 basu168 BSGatlas transcript 52748 53023 . + . ID=BSGatlas-transcript-70;color=#FF9900;Parent=BSGatlas-operon-25,BSGatlas-gene-66;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-50 basu168 BSGatlas exon 52748 53023 . + . ID=BSGatlas-transcript-70_exon;Parent=BSGatlas-transcript-70 basu168 BSGatlas UTR 52748 52762 . + . ID=BSGatlas-5'UTR-37;Parent=BSGatlas-transcript-70,BSGatlas-transcript-71;comment="5'UTR" basu168 BSGatlas TSS 52748 52748 . + . ID=BSGatlas-TSS-50;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS, PubMed: 12761295,1310745,6181373,6820069" basu168 BSGatlas gene 52763 53023 . + . ID=BSGatlas-gene-66;color=#1E90FF;Name=veg;locus_tag=BSU00440,BSU_00440;Parent=BSGatlas-operon-25 basu168 BSGatlas CDS 52763 53023 . + 0 ID=BSGatlas-gene-66_transcribed;color=#1E90FF;Name=veg;Parent=BSGatlas-transcript-66,BSGatlas-transcript-67,BSGatlas-transcript-68,BSGatlas-transcript-69,BSGatlas-transcript-70,BSGatlas-transcript-71;comment="conserved hypothetical protein";synonyms="veg";subtiwiki_category="SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.2 Biofilm formation,SW 4.1.2.4 Regulation";go="GO:0005737 cytoplasm,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-66 basu168 BSGatlas terminator 52913 52957 . + . ID=BSGatlas-terminator-29;Parent=BSGatlas-transcript-66,BSGatlas-transcript-68,BSGatlas-transcript-70;comment="Based on: Nicolas et al. downshift, Energy: -9.9[kcal/mol]" basu168 BSGatlas terminator 53022 53064 . + . ID=BSGatlas-terminator-30;Parent=BSGatlas-transcript-67,BSGatlas-transcript-69,BSGatlas-transcript-71;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas UTR 53024 53064 . + . ID=BSGatlas-3'UTR-22;Parent=BSGatlas-transcript-67,BSGatlas-transcript-69,BSGatlas-transcript-71;comment="3'UTR" basu168 BSGatlas operon 53122 53415 . + . ID=BSGatlas-operon-26;color=#FF00CC basu168 BSGatlas transcript 53122 53415 . + . ID=BSGatlas-transcript-72;color=#FF9900;Parent=BSGatlas-operon-26,BSGatlas-gene-67;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-51 basu168 BSGatlas exon 53122 53415 . + . ID=BSGatlas-transcript-72_exon;Parent=BSGatlas-transcript-72 basu168 BSGatlas UTR 53122 53182 . + . ID=BSGatlas-5'UTR-38;Parent=BSGatlas-transcript-72;comment="5'UTR" basu168 BSGatlas TSS 53122 53122 . + . ID=BSGatlas-TSS-51;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,6205155" basu168 BSGatlas gene 53183 53368 . + . ID=BSGatlas-gene-67;color=#1E90FF;Name=sspF;locus_tag=BSU00450,BSU_00450;Parent=BSGatlas-operon-26 basu168 BSGatlas CDS 53183 53368 . + 0 ID=BSGatlas-gene-67_transcribed;color=#1E90FF;Name=sspF;Parent=BSGatlas-transcript-72;comment="small acid-soluble spore protein(alpha/beta-type SASP)";synonyms="sspF";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.3 Small acid-soluble spore proteins";go="GO:0003677 DNA binding,GO:0003690 double-stranded DNA binding,GO:0006265 DNA topological change,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-67 basu168 BSGatlas operon 53363 55717 . - . ID=BSGatlas-operon-27;color=#B32496 basu168 BSGatlas gene 53363 55717 . - . ID=BSGatlas-gene-68;color=#8F1D1D;Name=S31;locus_tag=new_53363_55717_c;Parent=BSGatlas-operon-27 basu168 BSGatlas transcript 53363 55717 . - . ID=BSGatlas-transcript-73;color=#B37924;Parent=BSGatlas-operon-27,BSGatlas-gene-68;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-53 basu168 BSGatlas ncRNA 53363 55717 . - . ID=BSGatlas-gene-68_transcribed;color=#8F1D1D;Name=S31;Parent=BSGatlas-transcript-73;synonyms="S31";derives_from=BSGatlas-gene-68 basu168 BSGatlas exon 53363 55717 . - . ID=BSGatlas-transcript-73_exon;Parent=BSGatlas-transcript-73 basu168 BSGatlas UTR 53369 53415 . + . ID=BSGatlas-3'UTR-23;Parent=BSGatlas-transcript-72;comment="3'UTR" basu168 BSGatlas terminator 53373 53415 . + . ID=BSGatlas-terminator-31;Parent=BSGatlas-transcript-72;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.6[kcal/mol]" basu168 BSGatlas operon 53469 55720 . + . ID=BSGatlas-operon-28;color=#FF00CC basu168 BSGatlas transcript 53469 55720 . + . ID=BSGatlas-transcript-74;color=#FF9900;Parent=BSGatlas-operon-28,BSGatlas-gene-69,BSGatlas-gene-70,BSGatlas-gene-71;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-52 basu168 BSGatlas exon 53469 55720 . + . ID=BSGatlas-transcript-74_exon;Parent=BSGatlas-transcript-74 basu168 BSGatlas UTR 53469 53515 . + . ID=BSGatlas-5'UTR-39;Parent=BSGatlas-transcript-74;comment="5'UTR" basu168 BSGatlas TSS 53469 53469 . + . ID=BSGatlas-TSS-52;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 53516 54385 . + . ID=BSGatlas-gene-69;color=#1E90FF;Name=ispE;locus_tag=BSU00460,BSU_00460;Parent=BSGatlas-operon-28 basu168 BSGatlas CDS 53516 54385 . + 0 ID=BSGatlas-gene-69_transcribed;color=#1E90FF;Name=ispE;Parent=BSGatlas-transcript-74;comment="4-(cytidine5'-diphospho)-2-C-methyl-D-erythritol kinase";synonyms="ispE,yabH";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.3 Biosynthesis of isoprenoids,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.1.148,EC-2.7.1.148";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0008299 isoprenoid biosynthetic process,GO:0016114 terpenoid biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway,GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity";derives_from=BSGatlas-gene-69 basu168 BSGatlas UTR 54386 54440 . + . ID=BSGatlas-internal_UTR-25;Parent=BSGatlas-transcript-74;comment="internal_UTR" basu168 BSGatlas transcript 54441 55720 . + . ID=BSGatlas-transcript-75;color=#FF9900;Parent=BSGatlas-operon-28,BSGatlas-gene-70,BSGatlas-gene-71;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas exon 54441 55720 . + . ID=BSGatlas-transcript-75_exon;Parent=BSGatlas-transcript-75 basu168 BSGatlas gene 54441 55298 . + . ID=BSGatlas-gene-70;color=#1E90FF;Name=purR;locus_tag=BSU00470,BSU_00470;Parent=BSGatlas-operon-28 basu168 BSGatlas CDS 54441 55298 . + 0 ID=BSGatlas-gene-70_transcribed;color=#1E90FF;Name=purR;Parent=BSGatlas-transcript-74,BSGatlas-transcript-75;comment="transcriptional regulator of the purinebiosynthesis operon (PurR-pRpp)";synonyms="purR,yabI";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0009116 nucleoside metabolic process,GO:0045892 negative regulation of transcription, DNA-templated,GO:0045982 negative regulation of purine nucleobase metabolic process";derives_from=BSGatlas-gene-70 basu168 BSGatlas gene 55295 55672 . + . ID=BSGatlas-gene-71;color=#1E90FF;Name=ridA;locus_tag=BSU00480,BSU_00480;Parent=BSGatlas-operon-28 basu168 BSGatlas CDS 55295 55672 . + 0 ID=BSGatlas-gene-71_transcribed;color=#1E90FF;Name=ridA;Parent=BSGatlas-transcript-74,BSGatlas-transcript-75;comment="aminoacrylate/iminopropionatehydrolase/deaminase";synonyms="yabJ";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.12 Biosynthesis/ acquisition of branched-chain amino acids,SW 2.7 Detoxification reactions";ec="3.5.99.10";go="GO:0005737 cytoplasm,GO:0008652 cellular amino acid biosynthetic process,GO:0009082 branched-chain amino acid biosynthetic process,GO:0009097 isoleucine biosynthetic process,GO:0009636 response to toxic substance,GO:0016787 hydrolase activity,GO:0019239 deaminase activity,GO:0046360 2-oxobutyrate biosynthetic process";derives_from=BSGatlas-gene-71 basu168 BSGatlas UTR 55673 55720 . + . ID=BSGatlas-3'UTR-24;Parent=BSGatlas-transcript-74,BSGatlas-transcript-75;comment="3'UTR" basu168 BSGatlas terminator 55676 55720 . + . ID=BSGatlas-terminator-32;Parent=BSGatlas-transcript-74,BSGatlas-transcript-75;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.5[kcal/mol]" basu168 BSGatlas TSS 55718 55718 . - . ID=BSGatlas-TSS-53;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 55830 56234 . + . ID=BSGatlas-operon-29;color=#FF00CC basu168 BSGatlas transcript 55830 56234 . + . ID=BSGatlas-transcript-77;color=#FF9900;Parent=BSGatlas-operon-29,BSGatlas-gene-72;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-54 basu168 BSGatlas exon 55830 56234 . + . ID=BSGatlas-transcript-77_exon;Parent=BSGatlas-transcript-77 basu168 BSGatlas transcript 55830 56159 . + . ID=BSGatlas-transcript-76;color=#FF9900;Parent=BSGatlas-operon-29,BSGatlas-gene-72;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-54 basu168 BSGatlas exon 55830 56159 . + . ID=BSGatlas-transcript-76_exon;Parent=BSGatlas-transcript-76 basu168 BSGatlas UTR 55830 55865 . + . ID=BSGatlas-5'UTR-40;Parent=BSGatlas-transcript-76,BSGatlas-transcript-77;comment="5'UTR" basu168 BSGatlas TSS 55830 55830 . + . ID=BSGatlas-TSS-54;color=#FF0000;comment="Simga: H, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 11254139,116131,17962296,2500529,3099284,3101583,408013,6269757,6405278,6411929,6414720" basu168 BSGatlas transcript 55831 56234 . + . ID=BSGatlas-transcript-79;color=#FF9900;Parent=BSGatlas-operon-29,BSGatlas-gene-72;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-55 basu168 BSGatlas exon 55831 56234 . + . ID=BSGatlas-transcript-79_exon;Parent=BSGatlas-transcript-79 basu168 BSGatlas transcript 55831 56159 . + . ID=BSGatlas-transcript-78;color=#FF9900;Parent=BSGatlas-operon-29,BSGatlas-gene-72;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-55 basu168 BSGatlas exon 55831 56159 . + . ID=BSGatlas-transcript-78_exon;Parent=BSGatlas-transcript-78 basu168 BSGatlas UTR 55831 55865 . + . ID=BSGatlas-5'UTR-41;Parent=BSGatlas-transcript-78,BSGatlas-transcript-79;comment="5'UTR" basu168 BSGatlas TSS 55831 55831 . + . ID=BSGatlas-TSS-55;color=#FF0000;comment="Simga: H, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 11254139,116131,2500529,3099284,3101583,3277943,408013,6269757,6405278,6411929,6414720,6781761,6784117" basu168 BSGatlas gene 55866 56159 . + . ID=BSGatlas-gene-72;color=#1E90FF;Name=spoVG;locus_tag=BSU00490,BSU_00490;Parent=BSGatlas-operon-29 basu168 BSGatlas CDS 55866 56159 . + 0 ID=BSGatlas-gene-72_transcribed;color=#1E90FF;Name=spoVG;Parent=BSGatlas-transcript-76,BSGatlas-transcript-77,BSGatlas-transcript-78,BSGatlas-transcript-79;comment="regulator required for spore cortex synthesis(stage V sporulation)";synonyms="spoVG";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.8 Cell division,SW 1.1.8.2 Other genes,SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.2 RNA chaperones,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.3 Sporulation/ other,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0000917 division septum assembly,GO:0007049 cell cycle,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0030436 asexual sporulation,GO:0051301 cell division";derives_from=BSGatlas-gene-72 basu168 BSGatlas terminator 56126 56170 . + . ID=BSGatlas-terminator-33;Parent=BSGatlas-transcript-76,BSGatlas-transcript-78;comment="Based on: Nicolas et al. downshift, Energy: -22.3[kcal/mol]" basu168 BSGatlas UTR 56160 56234 . + . ID=BSGatlas-3'UTR-25;Parent=BSGatlas-transcript-77,BSGatlas-transcript-79;comment="3'UTR" basu168 BSGatlas terminator 56173 56234 . + . ID=BSGatlas-terminator-34;Parent=BSGatlas-transcript-77,BSGatlas-transcript-79;comment="Based on: BsubCyc,DBTBS, Energy: -28.1[kcal/mol]" basu168 BSGatlas operon 56324 64710 . + . ID=BSGatlas-operon-30;color=#FF00CC basu168 BSGatlas transcript 56324 64710 . + . ID=BSGatlas-transcript-82;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-73,BSGatlas-gene-74,BSGatlas-gene-75,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-56 basu168 BSGatlas exon 56324 64710 . + . ID=BSGatlas-transcript-82_exon;Parent=BSGatlas-transcript-82 basu168 BSGatlas transcript 56324 64661 . + . ID=BSGatlas-transcript-81;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-73,BSGatlas-gene-74,BSGatlas-gene-75,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-56 basu168 BSGatlas exon 56324 64661 . + . ID=BSGatlas-transcript-81_exon;Parent=BSGatlas-transcript-81 basu168 BSGatlas transcript 56324 59445 . + . ID=BSGatlas-transcript-80;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-73,BSGatlas-gene-74,BSGatlas-gene-75;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-56 basu168 BSGatlas exon 56324 59445 . + . ID=BSGatlas-transcript-80_exon;Parent=BSGatlas-transcript-80 basu168 BSGatlas UTR 56324 56351 . + . ID=BSGatlas-5'UTR-42;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82;comment="5'UTR" basu168 BSGatlas TSS 56324 56324 . + . ID=BSGatlas-TSS-56;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 1310745,17962296,6181373" basu168 BSGatlas gene 56352 57722 . + . ID=BSGatlas-gene-73;color=#1E90FF;Name=glmU;locus_tag=BSU00500,BSU_00500;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 56352 57722 . + 0 ID=BSGatlas-gene-73_transcribed;color=#1E90FF;Name=glmU;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82;comment="bifunctional glucosamine-1-phosphateN-acetyltransferase/UDP-N-acetylglucosaminepyrophosphorylase";synonyms="gcaD,glmU,tms,tms26";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.3.1.157;2.7.7.23,2.7.7.23,EC-2.3.1.157;EC-2.7.7.23";go="GO:0000287 magnesium ion binding,GO:0000902 cell morphogenesis,GO:0003824 catalytic activity,GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity,GO:0005737 cytoplasm,GO:0006048 UDP-N-acetylglucosamine biosynthetic process,GO:0008152 metabolic process,GO:0008360 regulation of cell shape,GO:0009058 biosynthetic process,GO:0009103 lipopolysaccharide biosynthetic process,GO:0009245 lipid A biosynthetic process,GO:0009252 peptidoglycan biosynthetic process,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups,GO:0016779 nucleotidyltransferase activity,GO:0019134 glucosamine-1-phosphate N-acetyltransferase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-73 basu168 BSGatlas terminator 57675 57719 . - . ID=BSGatlas-terminator-35;comment="Based on: Nicolas et al. downshift, Energy: -13.8[kcal/mol]" basu168 BSGatlas UTR 57723 57744 . + . ID=BSGatlas-internal_UTR-26;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82;comment="internal_UTR" basu168 BSGatlas gene 57745 58698 . + . ID=BSGatlas-gene-74;color=#1E90FF;Name=prs;locus_tag=BSU00510,BSU_00510;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 57745 58698 . + 0 ID=BSGatlas-gene-74_transcribed;color=#1E90FF;Name=prs;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82;comment="phosphoribosylpyrophosphate synthetase";synonyms="prs";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.14 Biosynthesis/ acquisition of histidine,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides,SW 2.5.2.4 Biosynthesis/ acquisition of pyrimidine nucleotides,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";ec="2.7.6.1,EC-2.7.6.1";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0004749 ribose phosphate diphosphokinase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process,GO:0009156 ribonucleoside monophosphate biosynthetic process,GO:0009165 nucleotide biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-74 basu168 BSGatlas UTR 58699 58782 . + . ID=BSGatlas-internal_UTR-27;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82;comment="internal_UTR" basu168 BSGatlas transcript 58748 64710 . + . ID=BSGatlas-transcript-86;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-75,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-57 basu168 BSGatlas exon 58748 64710 . + . ID=BSGatlas-transcript-86_exon;Parent=BSGatlas-transcript-86 basu168 BSGatlas transcript 58748 64661 . + . ID=BSGatlas-transcript-85;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-75,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-57 basu168 BSGatlas exon 58748 64661 . + . ID=BSGatlas-transcript-85_exon;Parent=BSGatlas-transcript-85 basu168 BSGatlas transcript 58748 60360 . + . ID=BSGatlas-transcript-84;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-75,BSGatlas-gene-76,BSGatlas-gene-77;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-57 basu168 BSGatlas exon 58748 60360 . + . ID=BSGatlas-transcript-84_exon;Parent=BSGatlas-transcript-84 basu168 BSGatlas transcript 58748 59445 . + . ID=BSGatlas-transcript-83;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-75;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-57 basu168 BSGatlas exon 58748 59445 . + . ID=BSGatlas-transcript-83_exon;Parent=BSGatlas-transcript-83 basu168 BSGatlas UTR 58748 58782 . + . ID=BSGatlas-5'UTR-43;Parent=BSGatlas-transcript-83,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86;comment="5'UTR" basu168 BSGatlas TSS 58748 58748 . + . ID=BSGatlas-TSS-57;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10482513,3100810,6202876,6273816,6790515,8012595,8253681" basu168 BSGatlas gene 58783 59397 . + . ID=BSGatlas-gene-75;color=#1E90FF;Name=ctc;locus_tag=BSU00520,BSU_00520;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 58783 59397 . + 0 ID=BSGatlas-gene-75_transcribed;color=#1E90FF;Name=ctc;Parent=BSGatlas-transcript-80,BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-83,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86;comment="ribosomal protein BL25 (Ctc), binding 5S RNA";synonyms="ctc";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0000303 response to superoxide,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0006950 response to stress,GO:0008097 5S rRNA binding,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-75 basu168 BSGatlas UTR 59398 59503 . + . ID=BSGatlas-internal_UTR-28;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86;comment="internal_UTR" basu168 BSGatlas UTR 59398 59445 . + . ID=BSGatlas-3'UTR-26;Parent=BSGatlas-transcript-80,BSGatlas-transcript-83;comment="3'UTR" basu168 BSGatlas terminator 59401 59445 . + . ID=BSGatlas-terminator-36;Parent=BSGatlas-transcript-80,BSGatlas-transcript-83;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.4[kcal/mol]" basu168 BSGatlas transcript 59504 64710 . + . ID=BSGatlas-transcript-88;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-58 basu168 BSGatlas exon 59504 64710 . + . ID=BSGatlas-transcript-88_exon;Parent=BSGatlas-transcript-88 basu168 BSGatlas transcript 59504 64661 . + . ID=BSGatlas-transcript-87;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-76,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-58 basu168 BSGatlas exon 59504 64661 . + . ID=BSGatlas-transcript-87_exon;Parent=BSGatlas-transcript-87 basu168 BSGatlas gene 59504 60070 . + . ID=BSGatlas-gene-76;color=#1E90FF;Name=pth;locus_tag=BSU00530,BSU_00530;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 59504 60070 . + 0 ID=BSGatlas-gene-76_transcribed;color=#1E90FF;Name=pth;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88;comment="peptidyl-tRNA hydrolase";synonyms="pth,spoVC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.12 Translation/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.1 Essential genes";ec="3.1.1.29,EC-3.1.1.29";go="GO:0004045 aminoacyl-tRNA hydrolase activity,GO:0005737 cytoplasm,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-76 basu168 BSGatlas TSS 59689 59689 . + . ID=BSGatlas-TSS-58;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 60071 60129 . + . ID=BSGatlas-internal_UTR-29;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88;comment="internal_UTR" basu168 BSGatlas transcript 60130 64710 . + . ID=BSGatlas-transcript-91;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: SubtiWiki" basu168 BSGatlas exon 60130 64710 . + . ID=BSGatlas-transcript-91_exon;Parent=BSGatlas-transcript-91 basu168 BSGatlas transcript 60130 64661 . + . ID=BSGatlas-transcript-90;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-77,BSGatlas-gene-78,BSGatlas-gene-79;comment="Based on: SubtiWiki" basu168 BSGatlas exon 60130 64661 . + . ID=BSGatlas-transcript-90_exon;Parent=BSGatlas-transcript-90 basu168 BSGatlas gene 60130 60360 . + . ID=BSGatlas-gene-77;color=#1E90FF;Name=fin;locus_tag=BSU00540,BSU_00540;Parent=BSGatlas-operon-30 basu168 BSGatlas transcript 60130 60360 . + . ID=BSGatlas-transcript-89;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-77;comment="Based on: BsubCyc,SubtiWiki" basu168 BSGatlas CDS 60130 60360 . + 0 ID=BSGatlas-gene-77_transcribed;color=#1E90FF;Name=fin;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-84,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88,BSGatlas-transcript-89,BSGatlas-transcript-90,BSGatlas-transcript-91;comment="protein required for the switch from F to Gduring sporulation (anti sigma F)";synonyms="fin,subA,yabK";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-77 basu168 BSGatlas exon 60130 60360 . + . ID=BSGatlas-transcript-89_exon;Parent=BSGatlas-transcript-89 basu168 BSGatlas UTR 60361 60429 . + . ID=BSGatlas-internal_UTR-30;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88,BSGatlas-transcript-90,BSGatlas-transcript-91;comment="internal_UTR" basu168 BSGatlas gene 60430 63963 . + . ID=BSGatlas-gene-78;color=#1E90FF;Name=mfd;locus_tag=BSU00550,BSU_00550;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 60430 63963 . + 0 ID=BSGatlas-gene-78_transcribed;color=#1E90FF;Name=mfd;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88,BSGatlas-transcript-90,BSGatlas-transcript-91;comment="transcription-repair coupling factor";synonyms="mfd";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.3 Transcription elongation/ termination";ec="3.6.4.-";go="GO:0000166 nucleotide binding,GO:0000716 transcription-coupled nucleotide-excision repair, DNA damage recognition,GO:0003676 nucleic acid binding,GO:0003677 DNA binding,GO:0003684 damaged DNA binding,GO:0004386 helicase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006281 DNA repair,GO:0006355 regulation of transcription, DNA-templated,GO:0006974 cellular response to DNA damage stimulus,GO:0008026 ATP-dependent helicase activity,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-78 basu168 BSGatlas UTR 63964 64098 . + . ID=BSGatlas-internal_UTR-31;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88,BSGatlas-transcript-90,BSGatlas-transcript-91;comment="internal_UTR" basu168 BSGatlas transcript 64016 64710 . + . ID=BSGatlas-transcript-93;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-79;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-59 basu168 BSGatlas exon 64016 64710 . + . ID=BSGatlas-transcript-93_exon;Parent=BSGatlas-transcript-93 basu168 BSGatlas transcript 64016 64661 . + . ID=BSGatlas-transcript-92;color=#FF9900;Parent=BSGatlas-operon-30,BSGatlas-gene-79;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-59 basu168 BSGatlas exon 64016 64661 . + . ID=BSGatlas-transcript-92_exon;Parent=BSGatlas-transcript-92 basu168 BSGatlas UTR 64016 64098 . + . ID=BSGatlas-5'UTR-44;Parent=BSGatlas-transcript-92,BSGatlas-transcript-93;comment="5'UTR" basu168 BSGatlas TSS 64016 64016 . + . ID=BSGatlas-TSS-59;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,8755877" basu168 BSGatlas gene 64099 64635 . + . ID=BSGatlas-gene-79;color=#1E90FF;Name=spoVT;locus_tag=BSU00560,BSU_00560;Parent=BSGatlas-operon-30 basu168 BSGatlas CDS 64099 64635 . + 0 ID=BSGatlas-gene-79_transcribed;color=#1E90FF;Name=spoVT;Parent=BSGatlas-transcript-81,BSGatlas-transcript-82,BSGatlas-transcript-85,BSGatlas-transcript-86,BSGatlas-transcript-87,BSGatlas-transcript-88,BSGatlas-transcript-90,BSGatlas-transcript-91,BSGatlas-transcript-92,BSGatlas-transcript-93;comment="transcriptional regulator of sporulation /germination";synonyms="spoVT,yabL";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-79 basu168 BSGatlas terminator 64617 64661 . + . ID=BSGatlas-terminator-37;Parent=BSGatlas-transcript-81,BSGatlas-transcript-85,BSGatlas-transcript-87,BSGatlas-transcript-90,BSGatlas-transcript-92;comment="Based on: Nicolas et al. downshift, Energy: -11.6[kcal/mol]" basu168 BSGatlas UTR 64636 64710 . + . ID=BSGatlas-3'UTR-28;Parent=BSGatlas-transcript-82,BSGatlas-transcript-86,BSGatlas-transcript-88,BSGatlas-transcript-91,BSGatlas-transcript-93;comment="3'UTR" basu168 BSGatlas UTR 64636 64661 . + . ID=BSGatlas-3'UTR-27;Parent=BSGatlas-transcript-81,BSGatlas-transcript-85,BSGatlas-transcript-87,BSGatlas-transcript-90,BSGatlas-transcript-92;comment="3'UTR" basu168 BSGatlas terminator 64665 64710 . + . ID=BSGatlas-terminator-38;Parent=BSGatlas-transcript-82,BSGatlas-transcript-86,BSGatlas-transcript-88,BSGatlas-transcript-91,BSGatlas-transcript-93;comment="Based on: BsubCyc,DBTBS, Energy: -15.2[kcal/mol]" basu168 BSGatlas operon 64746 70078 . + . ID=BSGatlas-operon-31;color=#FF00CC basu168 BSGatlas transcript 64746 70078 . + . ID=BSGatlas-transcript-95;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-80,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-60 basu168 BSGatlas exon 64746 70078 . + . ID=BSGatlas-transcript-95_exon;Parent=BSGatlas-transcript-95 basu168 BSGatlas transcript 64746 70028 . + . ID=BSGatlas-transcript-94;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-80,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-60 basu168 BSGatlas exon 64746 70028 . + . ID=BSGatlas-transcript-94_exon;Parent=BSGatlas-transcript-94 basu168 BSGatlas UTR 64746 64816 . + . ID=BSGatlas-5'UTR-45;Parent=BSGatlas-transcript-94,BSGatlas-transcript-95;comment="5'UTR" basu168 BSGatlas TSS 64746 64746 . + . ID=BSGatlas-TSS-60;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 64817 66415 . + . ID=BSGatlas-gene-80;color=#1E90FF;Name=yabM;locus_tag=BSU00570,BSU_00570;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 64817 66415 . + 0 ID=BSGatlas-gene-80_transcribed;color=#1E90FF;Name=yabM;Parent=BSGatlas-transcript-94,BSGatlas-transcript-95;comment="putative exporter";synonyms="yabM";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000271 polysaccharide biosynthetic process,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-80 basu168 BSGatlas transcript 66322 70078 . + . ID=BSGatlas-transcript-97;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-61 basu168 BSGatlas exon 66322 70078 . + . ID=BSGatlas-transcript-97_exon;Parent=BSGatlas-transcript-97 basu168 BSGatlas transcript 66322 70028 . + . ID=BSGatlas-transcript-96;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-61 basu168 BSGatlas exon 66322 70028 . + . ID=BSGatlas-transcript-96_exon;Parent=BSGatlas-transcript-96 basu168 BSGatlas UTR 66322 66404 . + . ID=BSGatlas-5'UTR-46;Parent=BSGatlas-transcript-96,BSGatlas-transcript-97;comment="5'UTR" basu168 BSGatlas TSS 66322 66322 . + . ID=BSGatlas-TSS-61;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 66405 70078 . + . ID=BSGatlas-transcript-99;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-62 basu168 BSGatlas exon 66405 70078 . + . ID=BSGatlas-transcript-99_exon;Parent=BSGatlas-transcript-99 basu168 BSGatlas transcript 66405 70028 . + . ID=BSGatlas-transcript-98;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-81,BSGatlas-gene-82,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-62 basu168 BSGatlas exon 66405 70028 . + . ID=BSGatlas-transcript-98_exon;Parent=BSGatlas-transcript-98 basu168 BSGatlas gene 66405 67874 . + . ID=BSGatlas-gene-81;color=#1E90FF;Name=yabN;locus_tag=BSU00580,BSU_00580;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 66405 67874 . + 0 ID=BSGatlas-gene-81_transcribed;color=#1E90FF;Name=yabN;Parent=BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="putative fusion methylase and nucleotidepyrophosphohydrolase";synonyms="yabN";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008168 methyltransferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-81 basu168 BSGatlas TSS 67081 67081 . + . ID=BSGatlas-TSS-62;color=#FF0000;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 67509 67509 . - . ID=BSGatlas-TSS-63;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 67877 68137 . + . ID=BSGatlas-gene-82;color=#1E90FF;Name=hslR;locus_tag=BSU00590,BSU_00590;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 67877 68137 . + 0 ID=BSGatlas-gene-82_transcribed;color=#1E90FF;Name=hslR;Parent=BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="ribosomal RNA binding protein involved in 50Srecycling; heat shock protein";synonyms="yabO";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.13 Translation/ other/ based on similarity";go="GO:0003723 RNA binding";derives_from=BSGatlas-gene-82 basu168 BSGatlas UTR 68138 68215 . + . ID=BSGatlas-internal_UTR-32;Parent=BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="internal_UTR" basu168 BSGatlas transcript 68178 70078 . + . ID=BSGatlas-transcript-101;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-64 basu168 BSGatlas exon 68178 70078 . + . ID=BSGatlas-transcript-101_exon;Parent=BSGatlas-transcript-101 basu168 BSGatlas transcript 68178 70028 . + . ID=BSGatlas-transcript-100;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-83,BSGatlas-gene-84,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-64 basu168 BSGatlas exon 68178 70028 . + . ID=BSGatlas-transcript-100_exon;Parent=BSGatlas-transcript-100 basu168 BSGatlas UTR 68178 68215 . + . ID=BSGatlas-5'UTR-47;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101;comment="5'UTR" basu168 BSGatlas TSS 68178 68178 . + . ID=BSGatlas-TSS-64;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 11283287" basu168 BSGatlas terminator 68191 68235 . - . ID=BSGatlas-terminator-39;comment="Based on: Nicolas et al. downshift, Energy: -13.9[kcal/mol]" basu168 BSGatlas gene 68216 68518 . + . ID=BSGatlas-gene-83;color=#1E90FF;Name=spcP;locus_tag=BSU00600,BSU_00600;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 68216 68518 . + 0 ID=BSGatlas-gene-83_transcribed;color=#1E90FF;Name=spcP;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="spore protein involved in the shaping of thespore coat";synonyms="yabP";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005628 prospore membrane,GO:0016020 membrane,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-83 basu168 BSGatlas gene 68515 69150 . + . ID=BSGatlas-gene-84;color=#1E90FF;Name=spcQ;locus_tag=BSU00610,BSU_00610;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 68515 69150 . + 0 ID=BSGatlas-gene-84_transcribed;color=#1E90FF;Name=spcQ;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="membrane protein of the forespore";synonyms="yabQ";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005628 prospore membrane,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-84 basu168 BSGatlas transcript 69054 70078 . + . ID=BSGatlas-transcript-103;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-65 basu168 BSGatlas exon 69054 70078 . + . ID=BSGatlas-transcript-103_exon;Parent=BSGatlas-transcript-103 basu168 BSGatlas transcript 69054 70028 . + . ID=BSGatlas-transcript-102;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-65 basu168 BSGatlas exon 69054 70028 . + . ID=BSGatlas-transcript-102_exon;Parent=BSGatlas-transcript-102 basu168 BSGatlas UTR 69054 69167 . + . ID=BSGatlas-5'UTR-48;Parent=BSGatlas-transcript-102,BSGatlas-transcript-103;comment="5'UTR" basu168 BSGatlas TSS 69054 69054 . + . ID=BSGatlas-TSS-65;color=#FF0000;comment="Simga: WX, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 12207695,9636707,9683469" basu168 BSGatlas transcript 69105 70078 . + . ID=BSGatlas-transcript-105;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-66 basu168 BSGatlas exon 69105 70078 . + . ID=BSGatlas-transcript-105_exon;Parent=BSGatlas-transcript-105 basu168 BSGatlas transcript 69105 70028 . + . ID=BSGatlas-transcript-104;color=#FF9900;Parent=BSGatlas-operon-31,BSGatlas-gene-85,BSGatlas-gene-86;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-66 basu168 BSGatlas exon 69105 70028 . + . ID=BSGatlas-transcript-104_exon;Parent=BSGatlas-transcript-104 basu168 BSGatlas UTR 69105 69167 . + . ID=BSGatlas-5'UTR-49;Parent=BSGatlas-transcript-104,BSGatlas-transcript-105;comment="5'UTR" basu168 BSGatlas TSS 69105 69105 . + . ID=BSGatlas-TSS-66;color=#FF0000;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 69151 69167 . + . ID=BSGatlas-internal_UTR-33;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="internal_UTR" basu168 BSGatlas gene 69168 69545 . + . ID=BSGatlas-gene-85;color=#1E90FF;Name=divIC;locus_tag=BSU00620,BSU_00620;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 69168 69545 . + 0 ID=BSGatlas-gene-85_transcribed;color=#1E90FF;Name=divIC;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-102,BSGatlas-transcript-103,BSGatlas-transcript-104,BSGatlas-transcript-105,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="cell-division initiation protein";synonyms="divIC";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.8 Cell division,SW 1.1.8.2 Other genes,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins";go="GO:0005515 protein binding,GO:0007049 cell cycle";derives_from=BSGatlas-gene-85 basu168 BSGatlas UTR 69546 69625 . + . ID=BSGatlas-internal_UTR-34;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-102,BSGatlas-transcript-103,BSGatlas-transcript-104,BSGatlas-transcript-105,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="internal_UTR" basu168 BSGatlas gene 69626 70012 . + . ID=BSGatlas-gene-86;color=#1E90FF;Name=yabR;locus_tag=BSU00630,BSU_00630;Parent=BSGatlas-operon-31 basu168 BSGatlas CDS 69626 70012 . + 0 ID=BSGatlas-gene-86_transcribed;color=#1E90FF;Name=yabR;Parent=BSGatlas-transcript-100,BSGatlas-transcript-101,BSGatlas-transcript-102,BSGatlas-transcript-103,BSGatlas-transcript-104,BSGatlas-transcript-105,BSGatlas-transcript-94,BSGatlas-transcript-95,BSGatlas-transcript-96,BSGatlas-transcript-97,BSGatlas-transcript-98,BSGatlas-transcript-99;comment="putative RNA degradation protein;polyribonucleotide nucleotidyltransferase orphosphorylase";synonyms="yabR";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="2.7.-.-";go="GO:0003723 RNA binding";derives_from=BSGatlas-gene-86 basu168 BSGatlas terminator 69984 70028 . + . ID=BSGatlas-terminator-40;Parent=BSGatlas-transcript-100,BSGatlas-transcript-102,BSGatlas-transcript-104,BSGatlas-transcript-94,BSGatlas-transcript-96,BSGatlas-transcript-98;comment="Based on: Nicolas et al. downshift, Energy: -12.5[kcal/mol]" basu168 BSGatlas UTR 70013 70078 . + . ID=BSGatlas-3'UTR-30;Parent=BSGatlas-transcript-101,BSGatlas-transcript-103,BSGatlas-transcript-105,BSGatlas-transcript-95,BSGatlas-transcript-97,BSGatlas-transcript-99;comment="3'UTR" basu168 BSGatlas UTR 70013 70028 . + . ID=BSGatlas-3'UTR-29;Parent=BSGatlas-transcript-100,BSGatlas-transcript-102,BSGatlas-transcript-104,BSGatlas-transcript-94,BSGatlas-transcript-96,BSGatlas-transcript-98;comment="3'UTR" basu168 BSGatlas terminator 70035 70078 . + . ID=BSGatlas-terminator-41;Parent=BSGatlas-transcript-101,BSGatlas-transcript-103,BSGatlas-transcript-105,BSGatlas-transcript-95,BSGatlas-transcript-97,BSGatlas-transcript-99;comment="Based on: BsubCyc,DBTBS, Energy: -15.7[kcal/mol]" basu168 BSGatlas operon 70156 70257 . + . ID=BSGatlas-operon-32;color=#FF00CC basu168 BSGatlas transcript 70156 70257 . + . ID=BSGatlas-transcript-106;color=#FF9900;Parent=BSGatlas-operon-32,BSGatlas-gene-87;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-67 basu168 BSGatlas exon 70156 70257 . + . ID=BSGatlas-transcript-106_exon;Parent=BSGatlas-transcript-106 basu168 BSGatlas UTR 70156 70179 . + . ID=BSGatlas-5'UTR-50;Parent=BSGatlas-transcript-106;comment="5'UTR" basu168 BSGatlas TSS 70156 70156 . + . ID=BSGatlas-TSS-67;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 70180 70257 . + . ID=BSGatlas-gene-87;color=#FFFF00;Name=trnSL-Met1;locus_tag=BSU_tRNA_10,BSU_TRNA_10;Parent=BSGatlas-operon-32 basu168 BSGatlas tRNA 70180 70257 . + . ID=BSGatlas-gene-87_transcribed;color=#FFFF00;Name=trnSL-Met1;Parent=BSGatlas-transcript-106;comment="tRNA-Met";synonyms="trnSL-Met1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-87 basu168 BSGatlas operon 70266 70601 . + . ID=BSGatlas-operon-33;color=#FF00CC basu168 BSGatlas transcript 70266 70601 . + . ID=BSGatlas-transcript-108;color=#FF9900;Parent=BSGatlas-operon-33,BSGatlas-gene-88;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas exon 70266 70601 . + . ID=BSGatlas-transcript-108_exon;Parent=BSGatlas-transcript-108 basu168 BSGatlas transcript 70266 70386 . + . ID=BSGatlas-transcript-107;color=#FF9900;Parent=BSGatlas-operon-33,BSGatlas-gene-88;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas exon 70266 70386 . + . ID=BSGatlas-transcript-107_exon;Parent=BSGatlas-transcript-107 basu168 BSGatlas gene 70266 70338 . + . ID=BSGatlas-gene-88;color=#FFFF00;Name=trnSL-Glu1;locus_tag=BSU_tRNA_11,BSU_TRNA_11;Parent=BSGatlas-operon-33 basu168 BSGatlas tRNA 70266 70338 . + . ID=BSGatlas-gene-88_transcribed;color=#FFFF00;Name=trnSL-Glu1;Parent=BSGatlas-transcript-107,BSGatlas-transcript-108;comment="tRNA-Glu";synonyms="trnSL-Glu1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-88 basu168 BSGatlas UTR 70339 70601 . + . ID=BSGatlas-3'UTR-32;Parent=BSGatlas-transcript-108;comment="3'UTR" basu168 BSGatlas UTR 70339 70386 . + . ID=BSGatlas-3'UTR-31;Parent=BSGatlas-transcript-107;comment="3'UTR" basu168 BSGatlas terminator 70344 70386 . + . ID=BSGatlas-terminator-42;Parent=BSGatlas-transcript-107;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.9[kcal/mol]" basu168 BSGatlas operon 70509 78953 . + . ID=BSGatlas-operon-34;color=#FF00CC basu168 BSGatlas transcript 70509 78953 . + . ID=BSGatlas-transcript-110;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-89,BSGatlas-gene-91,BSGatlas-gene-92,BSGatlas-gene-93,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-68 basu168 BSGatlas exon 70509 78953 . + . ID=BSGatlas-transcript-110_exon;Parent=BSGatlas-transcript-110 basu168 BSGatlas transcript 70509 73021 . + . ID=BSGatlas-transcript-109;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-89;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-68 basu168 BSGatlas exon 70509 73021 . + . ID=BSGatlas-transcript-109_exon;Parent=BSGatlas-transcript-109 basu168 BSGatlas UTR 70509 70537 . + . ID=BSGatlas-5'UTR-51;Parent=BSGatlas-transcript-109,BSGatlas-transcript-110;comment="5'UTR" basu168 BSGatlas TSS 70509 70509 . + . ID=BSGatlas-TSS-68;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 1556084,17962296,2832371" basu168 BSGatlas gene 70538 73021 . + . ID=BSGatlas-gene-89;color=#1E90FF;Name=spoIIE;locus_tag=BSU00640,BSU_00640;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 70538 73021 . + 0 ID=BSGatlas-gene-89_transcribed;color=#1E90FF;Name=spoIIE;Parent=BSGatlas-transcript-109,BSGatlas-transcript-110;comment="SpoIIAA-phosphate serine phosphatase";synonyms="spoIIE,spoIIH,spoIIK";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.1.3.16,EC-3.1.3.16";go="GO:0003824 catalytic activity,GO:0004721 phosphoprotein phosphatase activity,GO:0004722 protein serine/threonine phosphatase activity,GO:0005515 protein binding,GO:0005628 prospore membrane,GO:0005886 plasma membrane,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0070262 peptidyl-serine dephosphorylation";derives_from=BSGatlas-gene-89 basu168 BSGatlas terminator 70557 70601 . + . ID=BSGatlas-terminator-43;Parent=BSGatlas-transcript-108;comment="Based on: Nicolas et al. downshift, Energy: -10.8[kcal/mol]" basu168 BSGatlas operon 71190 71799 . - . ID=BSGatlas-operon-35;color=#B32496 basu168 BSGatlas gene 71190 71799 . - . ID=BSGatlas-gene-90;color=#8F1D1D;Name=S37;locus_tag=new_71190_71799_c;Parent=BSGatlas-operon-35 basu168 BSGatlas transcript 71190 71799 . - . ID=BSGatlas-transcript-111;color=#B37924;Parent=BSGatlas-operon-35,BSGatlas-gene-90;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-69 basu168 BSGatlas ncRNA 71190 71799 . - . ID=BSGatlas-gene-90_transcribed;color=#8F1D1D;Name=S37;Parent=BSGatlas-transcript-111;synonyms="S37";derives_from=BSGatlas-gene-90 basu168 BSGatlas exon 71190 71799 . - . ID=BSGatlas-transcript-111_exon;Parent=BSGatlas-transcript-111 basu168 BSGatlas terminator 71194 71238 . - . ID=BSGatlas-terminator-44;Parent=BSGatlas-transcript-111;comment="Based on: Nicolas et al. downshift, Energy: -13.9[kcal/mol]" basu168 BSGatlas TSS 71798 71798 . - . ID=BSGatlas-TSS-69;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 72031 78953 . + . ID=BSGatlas-transcript-112;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-91,BSGatlas-gene-92,BSGatlas-gene-93,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-70 basu168 BSGatlas exon 72031 78953 . + . ID=BSGatlas-transcript-112_exon;Parent=BSGatlas-transcript-112 basu168 BSGatlas UTR 72031 73105 . + . ID=BSGatlas-5'UTR-52;Parent=BSGatlas-transcript-112;comment="5'UTR" basu168 BSGatlas TSS 72031 72031 . + . ID=BSGatlas-TSS-70;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 73022 73105 . + . ID=BSGatlas-internal_UTR-35;Parent=BSGatlas-transcript-110;comment="internal_UTR" basu168 BSGatlas transcript 73065 78953 . + . ID=BSGatlas-transcript-113;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-91,BSGatlas-gene-92,BSGatlas-gene-93,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-71 basu168 BSGatlas exon 73065 78953 . + . ID=BSGatlas-transcript-113_exon;Parent=BSGatlas-transcript-113 basu168 BSGatlas UTR 73065 73105 . + . ID=BSGatlas-5'UTR-53;Parent=BSGatlas-transcript-113;comment="5'UTR" basu168 BSGatlas TSS 73065 73065 . + . ID=BSGatlas-TSS-71;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 73106 73843 . + . ID=BSGatlas-gene-91;color=#1E90FF;Name=yabS;locus_tag=BSU00650,BSU_00650;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 73106 73843 . + 0 ID=BSGatlas-gene-91_transcribed;color=#1E90FF;Name=yabS;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113;comment="conserved protein of unknown function";synonyms="yabS";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-91 basu168 BSGatlas gene 73809 74825 . + . ID=BSGatlas-gene-92;color=#1E90FF;Name=prkT;locus_tag=BSU00660,BSU_00660;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 73809 74825 . + 0 ID=BSGatlas-gene-92_transcribed;color=#1E90FF;Name=prkT;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113;comment="serine/threonine-protein kinase";synonyms="yabT";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="2.7.11.1,EC-2.7.11.21;EC-2.7.11.22;EC-2.7.11.13;EC-2.7.11.1;EC-2.7.11.17;EC-2.7.11.12";go="GO:0000166 nucleotide binding,GO:0004672 protein kinase activity,GO:0004674 protein serine/threonine kinase activity,GO:0005524 ATP binding,GO:0006468 protein phosphorylation,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups,GO:0030428 cell septum,GO:0036290 protein trans-autophosphorylation,GO:0042601 endospore-forming forespore";derives_from=BSGatlas-gene-92 basu168 BSGatlas transcript 74385 78953 . + . ID=BSGatlas-transcript-114;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-93,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-72 basu168 BSGatlas exon 74385 78953 . + . ID=BSGatlas-transcript-114_exon;Parent=BSGatlas-transcript-114 basu168 BSGatlas UTR 74385 74928 . + . ID=BSGatlas-5'UTR-54;Parent=BSGatlas-transcript-114;comment="5'UTR" basu168 BSGatlas TSS 74385 74385 . + . ID=BSGatlas-TSS-72;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 74826 74928 . + . ID=BSGatlas-internal_UTR-36;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113;comment="internal_UTR" basu168 BSGatlas transcript 74886 78953 . + . ID=BSGatlas-transcript-115;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-93,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-73 basu168 BSGatlas exon 74886 78953 . + . ID=BSGatlas-transcript-115_exon;Parent=BSGatlas-transcript-115 basu168 BSGatlas UTR 74886 74928 . + . ID=BSGatlas-5'UTR-55;Parent=BSGatlas-transcript-115;comment="5'UTR" basu168 BSGatlas TSS 74886 74886 . + . ID=BSGatlas-TSS-73;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 74929 76347 . + . ID=BSGatlas-gene-93;color=#1E90FF;Name=tilS;locus_tag=BSU00670,BSU_00670;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 74929 76347 . + 0 ID=BSGatlas-gene-93_transcribed;color=#1E90FF;Name=tilS;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115;comment="tRNA(ile2) lysidine synthetase";synonyms="mesJ,tilS,yacA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.8 tRNA modification and maturation,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.3.4.19,EC-6.3.4.19";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006400 tRNA modification,GO:0008033 tRNA processing,GO:0016874 ligase activity,GO:0016879 ligase activity, forming carbon-nitrogen bonds";derives_from=BSGatlas-gene-93 basu168 BSGatlas transcript 75749 78953 . + . ID=BSGatlas-transcript-116;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-94,BSGatlas-gene-95;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-74 basu168 BSGatlas exon 75749 78953 . + . ID=BSGatlas-transcript-116_exon;Parent=BSGatlas-transcript-116 basu168 BSGatlas UTR 75749 76343 . + . ID=BSGatlas-5'UTR-56;Parent=BSGatlas-transcript-116;comment="5'UTR" basu168 BSGatlas TSS 75749 75749 . + . ID=BSGatlas-TSS-74;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 76320 76364 . - . ID=BSGatlas-terminator-45;comment="Based on: Nicolas et al. downshift, Energy: -9.1[kcal/mol]" basu168 BSGatlas gene 76344 76886 . + . ID=BSGatlas-gene-94;color=#1E90FF;Name=hprT;locus_tag=BSU00680,BSU_00680;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 76344 76886 . + 0 ID=BSGatlas-gene-94_transcribed;color=#1E90FF;Name=hprT;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115,BSGatlas-transcript-116;comment="hypoxanthine-guanine phosphoribosyltransferase";synonyms="hprT";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.3 Purine salvage and interconversion,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 3.5 Targets of second messengers,SW 3.5.3 Targets of (p)ppGpp,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";ec="2.4.2.8,EC-2.4.2.8";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0004422 hypoxanthine phosphoribosyltransferase activity,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006166 purine ribonucleoside salvage,GO:0006168 adenine salvage,GO:0006178 guanine salvage,GO:0009116 nucleoside metabolic process,GO:0016740 transferase activity,GO:0016757 transferase activity, transferring glycosyl groups,GO:0032263 GMP salvage,GO:0032264 IMP salvage,GO:0046100 hypoxanthine metabolic process,GO:0046872 metal ion binding,GO:0052657 guanine phosphoribosyltransferase activity";derives_from=BSGatlas-gene-94 basu168 BSGatlas TSS 76749 76749 . - . ID=BSGatlas-TSS-75;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 76887 76983 . + . ID=BSGatlas-internal_UTR-37;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115,BSGatlas-transcript-116;comment="internal_UTR" basu168 BSGatlas transcript 76954 78953 . + . ID=BSGatlas-transcript-117;color=#FF9900;Parent=BSGatlas-operon-34,BSGatlas-gene-95;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-76 basu168 BSGatlas exon 76954 78953 . + . ID=BSGatlas-transcript-117_exon;Parent=BSGatlas-transcript-117 basu168 BSGatlas UTR 76954 76983 . + . ID=BSGatlas-5'UTR-57;Parent=BSGatlas-transcript-117;comment="5'UTR" basu168 BSGatlas TSS 76954 76954 . + . ID=BSGatlas-TSS-76;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 17962296,7608085" basu168 BSGatlas gene 76984 78897 . + . ID=BSGatlas-gene-95;color=#1E90FF;Name=ftsH;locus_tag=BSU00690,BSU_00690;Parent=BSGatlas-operon-34 basu168 BSGatlas CDS 76984 78897 . + 0 ID=BSGatlas-gene-95_transcribed;color=#1E90FF;Name=ftsH;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115,BSGatlas-transcript-116,BSGatlas-transcript-117;comment="ATP-dependent cytoplasmic membrane protease";synonyms="ftsH";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.8 Cell division,SW 1.1.8.2 Other genes,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.4 Additional proteins involved in proteolysis,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.2 Biofilm formation,SW 4.1.2.4 Regulation,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 4.3.4 Heat shock proteins,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.4.24.-";go="GO:0000166 nucleotide binding,GO:0004222 metalloendopeptidase activity,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006508 proteolysis,GO:0006950 response to stress,GO:0007049 cell cycle,GO:0008233 peptidase activity,GO:0008237 metallopeptidase activity,GO:0008270 zinc ion binding,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity,GO:0030163 protein catabolic process,GO:0030428 cell septum,GO:0043934 sporulation,GO:0046872 metal ion binding,GO:0051301 cell division";derives_from=BSGatlas-gene-95 basu168 BSGatlas UTR 78898 78953 . + . ID=BSGatlas-3'UTR-33;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115,BSGatlas-transcript-116,BSGatlas-transcript-117;comment="3'UTR" basu168 BSGatlas terminator 78914 78953 . + . ID=BSGatlas-terminator-46;Parent=BSGatlas-transcript-110,BSGatlas-transcript-112,BSGatlas-transcript-113,BSGatlas-transcript-114,BSGatlas-transcript-115,BSGatlas-transcript-116,BSGatlas-transcript-117;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.1[kcal/mol]" basu168 BSGatlas TSS 78942 78942 . - . ID=BSGatlas-TSS-77;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 79027 82742 . + . ID=BSGatlas-operon-36;color=#FF00CC basu168 BSGatlas transcript 79027 82742 . + . ID=BSGatlas-transcript-119;color=#FF9900;Parent=BSGatlas-operon-36,BSGatlas-gene-96,BSGatlas-gene-97,BSGatlas-gene-98,BSGatlas-gene-99;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-78 basu168 BSGatlas exon 79027 82742 . + . ID=BSGatlas-transcript-119_exon;Parent=BSGatlas-transcript-119 basu168 BSGatlas transcript 79027 80755 . + . ID=BSGatlas-transcript-118;color=#FF9900;Parent=BSGatlas-operon-36,BSGatlas-gene-96,BSGatlas-gene-97;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-78 basu168 BSGatlas exon 79027 80755 . + . ID=BSGatlas-transcript-118_exon;Parent=BSGatlas-transcript-118 basu168 BSGatlas UTR 79027 79091 . + . ID=BSGatlas-5'UTR-58;Parent=BSGatlas-transcript-118,BSGatlas-transcript-119;comment="5'UTR" basu168 BSGatlas TSS 79027 79027 . + . ID=BSGatlas-TSS-78;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 79092 79868 . + . ID=BSGatlas-gene-96;color=#1E90FF;Name=coaX;locus_tag=BSU00700,BSU_00700;Parent=BSGatlas-operon-36 basu168 BSGatlas CDS 79092 79868 . + 0 ID=BSGatlas-gene-96_transcribed;color=#1E90FF;Name=coaX;Parent=BSGatlas-transcript-118,BSGatlas-transcript-119;comment="pantothenate kinase type III";synonyms="coaX,yacB";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.4 Biosynthesis of coenzyme A,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";ec="2.7.1.33,EC-2.7.1.33";go="GO:0000166 nucleotide binding,GO:0004594 pantothenate kinase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0015937 coenzyme A biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0043169 cation binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-96 basu168 BSGatlas gene 79880 80755 . + . ID=BSGatlas-gene-97;color=#1E90FF;Name=hslO;locus_tag=BSU00710,BSU_00710;Parent=BSGatlas-operon-36 basu168 BSGatlas CDS 79880 80755 . + 0 ID=BSGatlas-gene-97_transcribed;color=#1E90FF;Name=hslO;Parent=BSGatlas-transcript-118,BSGatlas-transcript-119;comment="disulfide bond chaperone (heat shock proteinHSP33)";synonyms="hslO,yacC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.3 Chaperone/ protein folding/ based on similarity,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";go="GO:0005737 cytoplasm,GO:0006457 protein folding,GO:0051082 unfolded protein binding";derives_from=BSGatlas-gene-97 basu168 BSGatlas UTR 80756 80801 . + . ID=BSGatlas-internal_UTR-38;Parent=BSGatlas-transcript-119;comment="internal_UTR" basu168 BSGatlas gene 80802 81695 . + . ID=BSGatlas-gene-98;color=#1E90FF;Name=yacD;locus_tag=BSU00720,BSU_00720;Parent=BSGatlas-operon-36 basu168 BSGatlas CDS 80802 81695 . + 0 ID=BSGatlas-gene-98_transcribed;color=#1E90FF;Name=yacD;Parent=BSGatlas-transcript-119;comment="putative protein chaperone accessory lipoproteinfactor";synonyms="yacD";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.6 Protein secretion/ based on similarity,SW 6 Groups of genes,SW 6.12 Secreted proteins";go="GO:0000413 protein peptidyl-prolyl isomerization,GO:0003755 peptidyl-prolyl cis-trans isomerase activity,GO:0006457 protein folding,GO:0016853 isomerase activity";derives_from=BSGatlas-gene-98 basu168 BSGatlas transcript 81448 82742 . + . ID=BSGatlas-transcript-120;color=#FF9900;Parent=BSGatlas-operon-36,BSGatlas-gene-99;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-79 basu168 BSGatlas exon 81448 82742 . + . ID=BSGatlas-transcript-120_exon;Parent=BSGatlas-transcript-120 basu168 BSGatlas UTR 81448 81770 . + . ID=BSGatlas-5'UTR-59;Parent=BSGatlas-transcript-120;comment="5'UTR" basu168 BSGatlas TSS 81448 81448 . + . ID=BSGatlas-TSS-79;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 81696 81770 . + . ID=BSGatlas-internal_UTR-39;Parent=BSGatlas-transcript-119;comment="internal_UTR" basu168 BSGatlas transcript 81731 82742 . + . ID=BSGatlas-transcript-121;color=#FF9900;Parent=BSGatlas-operon-36,BSGatlas-gene-99;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-80 basu168 BSGatlas exon 81731 82742 . + . ID=BSGatlas-transcript-121_exon;Parent=BSGatlas-transcript-121 basu168 BSGatlas UTR 81731 81770 . + . ID=BSGatlas-5'UTR-60;Parent=BSGatlas-transcript-121;comment="5'UTR" basu168 BSGatlas TSS 81731 81731 . + . ID=BSGatlas-TSS-80;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 11445163,17962296" basu168 BSGatlas gene 81771 82697 . + . ID=BSGatlas-gene-99;color=#1E90FF;Name=cysK;locus_tag=BSU00730,BSU_00730;Parent=BSGatlas-operon-36 basu168 BSGatlas CDS 81771 82697 . + 0 ID=BSGatlas-gene-99_transcribed;color=#1E90FF;Name=cysK;Parent=BSGatlas-transcript-119,BSGatlas-transcript-120,BSGatlas-transcript-121;comment="cysteine synthase";synonyms="cysK";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.9 Biosynthesis/ acquisition of cysteine,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 3.4.3 Trigger enzyme,SW 3.4.3.2 Trigger enzymes that control gene expression by protein-protein interaction with transcription factors";ec="2.5.1.47,2.5.1.47;4.4.1.1,EC-2.5.1.47";go="GO:0004124 cysteine synthase activity,GO:0006535 cysteine biosynthetic process from serine,GO:0008652 cellular amino acid biosynthetic process,GO:0016740 transferase activity,GO:0019344 cysteine biosynthetic process";derives_from=BSGatlas-gene-99 basu168 BSGatlas UTR 82698 82742 . + . ID=BSGatlas-3'UTR-34;Parent=BSGatlas-transcript-119,BSGatlas-transcript-120,BSGatlas-transcript-121;comment="3'UTR" basu168 BSGatlas terminator 82705 82742 . + . ID=BSGatlas-terminator-47;Parent=BSGatlas-transcript-119,BSGatlas-transcript-120,BSGatlas-transcript-121;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas operon 82768 90282 . + . ID=BSGatlas-operon-37;color=#FF00CC basu168 BSGatlas transcript 82768 90282 . + . ID=BSGatlas-transcript-123;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-100,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107,BSGatlas-gene-109;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-81 basu168 BSGatlas exon 82768 90282 . + . ID=BSGatlas-transcript-123_exon;Parent=BSGatlas-transcript-123 basu168 BSGatlas transcript 82768 88694 . + . ID=BSGatlas-transcript-122;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-100,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-81 basu168 BSGatlas exon 82768 88694 . + . ID=BSGatlas-transcript-122_exon;Parent=BSGatlas-transcript-122 basu168 BSGatlas UTR 82768 82863 . + . ID=BSGatlas-5'UTR-61;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123;comment="5'UTR" basu168 BSGatlas TSS 82768 82768 . + . ID=BSGatlas-TSS-81;color=#FF0000;comment="Simga: I, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 82831 90282 . + . ID=BSGatlas-transcript-125;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-100,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107,BSGatlas-gene-109;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-82 basu168 BSGatlas exon 82831 90282 . + . ID=BSGatlas-transcript-125_exon;Parent=BSGatlas-transcript-125 basu168 BSGatlas transcript 82831 88694 . + . ID=BSGatlas-transcript-124;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-100,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-82 basu168 BSGatlas exon 82831 88694 . + . ID=BSGatlas-transcript-124_exon;Parent=BSGatlas-transcript-124 basu168 BSGatlas UTR 82831 82863 . + . ID=BSGatlas-5'UTR-62;Parent=BSGatlas-transcript-124,BSGatlas-transcript-125;comment="5'UTR" basu168 BSGatlas TSS 82831 82831 . + . ID=BSGatlas-TSS-82;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,9084182" basu168 BSGatlas gene 82864 84276 . + . ID=BSGatlas-gene-100;color=#1E90FF;Name=pabB;locus_tag=BSU00740,BSU_00740;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 82864 84276 . + 0 ID=BSGatlas-gene-100_transcribed;color=#1E90FF;Name=pabB;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125;comment="4-amino-4-deoxychorismate synthase(para-aminobenzoate synthase)";synonyms="pab,pabB";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate";ec="2.6.1.85";go="GO:0000287 magnesium ion binding,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0016833 oxo-acid-lyase activity,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process,GO:0046820 4-amino-4-deoxychorismate synthase activity";derives_from=BSGatlas-gene-100 basu168 BSGatlas transcript 83692 90282 . + . ID=BSGatlas-transcript-127;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107,BSGatlas-gene-109;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-83 basu168 BSGatlas exon 83692 90282 . + . ID=BSGatlas-transcript-127_exon;Parent=BSGatlas-transcript-127 basu168 BSGatlas transcript 83692 88694 . + . ID=BSGatlas-transcript-126;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-83 basu168 BSGatlas exon 83692 88694 . + . ID=BSGatlas-transcript-126_exon;Parent=BSGatlas-transcript-126 basu168 BSGatlas UTR 83692 84289 . + . ID=BSGatlas-5'UTR-63;Parent=BSGatlas-transcript-126,BSGatlas-transcript-127;comment="5'UTR" basu168 BSGatlas TSS 83692 83692 . + . ID=BSGatlas-TSS-83;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 84066 90282 . + . ID=BSGatlas-transcript-129;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107,BSGatlas-gene-109;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-84 basu168 BSGatlas exon 84066 90282 . + . ID=BSGatlas-transcript-129_exon;Parent=BSGatlas-transcript-129 basu168 BSGatlas transcript 84066 88694 . + . ID=BSGatlas-transcript-128;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-101,BSGatlas-gene-102,BSGatlas-gene-103,BSGatlas-gene-104,BSGatlas-gene-105,BSGatlas-gene-106,BSGatlas-gene-107;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-84 basu168 BSGatlas exon 84066 88694 . + . ID=BSGatlas-transcript-128_exon;Parent=BSGatlas-transcript-128 basu168 BSGatlas UTR 84066 84289 . + . ID=BSGatlas-5'UTR-64;Parent=BSGatlas-transcript-128,BSGatlas-transcript-129;comment="5'UTR" basu168 BSGatlas TSS 84066 84066 . + . ID=BSGatlas-TSS-84;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 84290 84874 . + . ID=BSGatlas-gene-101;color=#1E90FF;Name=pabA;locus_tag=BSU00750,BSU_00750;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 84290 84874 . + 0 ID=BSGatlas-gene-101_transcribed;color=#1E90FF;Name=pabA;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="4-amino-4-deoxychorismate synthase; anthranilatesynthase (subunit II)";synonyms="pabA,trpG,trpX";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate";ec="2.6.1.85,2.6.1.85;4.1.3.27,EC-4.1.3.27";go="GO:0000162 tryptophan biosynthetic process,GO:0004049 anthranilate synthase activity,GO:0006541 glutamine metabolic process,GO:0008152 metabolic process,GO:0008652 cellular amino acid biosynthetic process,GO:0009073 aromatic amino acid family biosynthetic process,GO:0016740 transferase activity,GO:0016829 lyase activity,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process,GO:0046820 4-amino-4-deoxychorismate synthase activity";derives_from=BSGatlas-gene-101 basu168 BSGatlas gene 84874 85755 . + . ID=BSGatlas-gene-102;color=#1E90FF;Name=pabC;locus_tag=BSU00760,BSU_00760;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 84874 85755 . + 0 ID=BSGatlas-gene-102_transcribed;color=#1E90FF;Name=pabC;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="4-amino-4-deoxychorismate pyruvate-lyase";synonyms="pabC";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate";ec="4.1.3.38,EC-4.1.3.38";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0008696 4-amino-4-deoxychorismate lyase activity,GO:0016829 lyase activity,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process";derives_from=BSGatlas-gene-102 basu168 BSGatlas gene 85737 86594 . + . ID=BSGatlas-gene-103;color=#1E90FF;Name=folP;locus_tag=BSU00770,BSU_00770;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 85737 86594 . + 0 ID=BSGatlas-gene-103_transcribed;color=#1E90FF;Name=folP;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="dihydropteroate synthase";synonyms="sul";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.5.1.15,EC-2.5.1.15";go="GO:0004156 dihydropteroate synthase activity,GO:0009396 folic acid-containing compound biosynthetic process,GO:0016740 transferase activity,GO:0042558 pteridine-containing compound metabolic process,GO:0044237 cellular metabolic process,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process,GO:0046677 response to antibiotic,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-103 basu168 BSGatlas gene 86587 86949 . + . ID=BSGatlas-gene-104;color=#1E90FF;Name=folB;locus_tag=BSU00780,BSU_00780;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 86587 86949 . + 0 ID=BSGatlas-gene-104_transcribed;color=#1E90FF;Name=folB;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="dihydroneopterin aldolase";synonyms="folA,folB,yacE";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate,SW 6 Groups of genes,SW 6.1 Essential genes";ec="4.1.2.25,EC-4.1.2.25";go="GO:0004150 dihydroneopterin aldolase activity,GO:0006760 folic acid-containing compound metabolic process,GO:0016829 lyase activity,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process";derives_from=BSGatlas-gene-104 basu168 BSGatlas gene 86946 87449 . + . ID=BSGatlas-gene-105;color=#1E90FF;Name=folK;locus_tag=BSU00790,BSU_00790;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 86946 87449 . + 0 ID=BSGatlas-gene-105_transcribed;color=#1E90FF;Name=folK;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="7,8-dihydro-6-hydroxymethylpterinpyrophosphokinase";synonyms="folK";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.6.3,EC-2.7.6.3";go="GO:0000166 nucleotide binding,GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity,GO:0005524 ATP binding,GO:0009396 folic acid-containing compound biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0046654 tetrahydrofolate biosynthetic process,GO:0046656 folic acid biosynthetic process";derives_from=BSGatlas-gene-105 basu168 BSGatlas gene 87401 87610 . + . ID=BSGatlas-gene-106;color=#1E90FF;Name=yazB;locus_tag=BSU00800,BSU_00800;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 87401 87610 . + 0 ID=BSGatlas-gene-106_transcribed;color=#1E90FF;Name=yazB;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="putative transcriptional regulator";synonyms="yazB";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-106 basu168 BSGatlas UTR 87611 87633 . + . ID=BSGatlas-internal_UTR-40;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="internal_UTR" basu168 BSGatlas gene 87634 88635 . + . ID=BSGatlas-gene-107;color=#1E90FF;Name=dusB;locus_tag=BSU00810,BSU_00810;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 87634 88635 . + 0 ID=BSGatlas-gene-107_transcribed;color=#1E90FF;Name=dusB;Parent=BSGatlas-transcript-122,BSGatlas-transcript-123,BSGatlas-transcript-124,BSGatlas-transcript-125,BSGatlas-transcript-126,BSGatlas-transcript-127,BSGatlas-transcript-128,BSGatlas-transcript-129;comment="tRNA-dihydrouridine synthase B";synonyms="dus1,dusB,yacF";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.8 tRNA modification and maturation";ec="1.-.-.-,EC-1.1.1";go="GO:0002943 tRNA dihydrouridine synthesis,GO:0003824 catalytic activity,GO:0008033 tRNA processing,GO:0016491 oxidoreductase activity,GO:0017150 tRNA dihydrouridine synthase activity,GO:0050660 flavin adenine dinucleotide binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-107 basu168 BSGatlas operon 88050 89566 . - . ID=BSGatlas-operon-38;color=#B32496 basu168 BSGatlas gene 88050 89566 . - . ID=BSGatlas-gene-108;color=#8F1D1D;Name=S41;locus_tag=new_88050_89566_c;Parent=BSGatlas-operon-38 basu168 BSGatlas transcript 88050 89566 . - . ID=BSGatlas-transcript-130;color=#B37924;Parent=BSGatlas-operon-38,BSGatlas-gene-108;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-85 basu168 BSGatlas ncRNA 88050 89566 . - . ID=BSGatlas-gene-108_transcribed;color=#8F1D1D;Name=S41;Parent=BSGatlas-transcript-130;synonyms="S41";derives_from=BSGatlas-gene-108 basu168 BSGatlas exon 88050 89566 . - . ID=BSGatlas-transcript-130_exon;Parent=BSGatlas-transcript-130 basu168 BSGatlas UTR 88636 88726 . + . ID=BSGatlas-internal_UTR-41;Parent=BSGatlas-transcript-123,BSGatlas-transcript-125,BSGatlas-transcript-127,BSGatlas-transcript-129;comment="internal_UTR" basu168 BSGatlas UTR 88636 88694 . + . ID=BSGatlas-3'UTR-35;Parent=BSGatlas-transcript-122,BSGatlas-transcript-124,BSGatlas-transcript-126,BSGatlas-transcript-128;comment="3'UTR" basu168 BSGatlas terminator 88654 88694 . + . ID=BSGatlas-terminator-48;Parent=BSGatlas-transcript-122,BSGatlas-transcript-124,BSGatlas-transcript-126,BSGatlas-transcript-128;comment="Based on: BsubCyc,DBTBS, Energy: -13[kcal/mol]" basu168 BSGatlas transcript 88727 90282 . + . ID=BSGatlas-transcript-131;color=#FF9900;Parent=BSGatlas-operon-37,BSGatlas-gene-109;comment="Based on: SubtiWiki" basu168 BSGatlas exon 88727 90282 . + . ID=BSGatlas-transcript-131_exon;Parent=BSGatlas-transcript-131 basu168 BSGatlas gene 88727 90226 . + . ID=BSGatlas-gene-109;color=#1E90FF;Name=lysS;locus_tag=BSU00820,BSU_00820;Parent=BSGatlas-operon-37 basu168 BSGatlas CDS 88727 90226 . + 0 ID=BSGatlas-gene-109_transcribed;color=#1E90FF;Name=lysS;Parent=BSGatlas-transcript-123,BSGatlas-transcript-125,BSGatlas-transcript-127,BSGatlas-transcript-129,BSGatlas-transcript-131;comment="lysyl-tRNA synthetase";synonyms="lysS";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.10 Aminoacyl-tRNA synthetases,SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.1.1.6,EC-6.1.1.6";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0003676 nucleic acid binding,GO:0004812 aminoacyl-tRNA ligase activity,GO:0004824 lysine-tRNA ligase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006418 tRNA aminoacylation for protein translation,GO:0006430 lysyl-tRNA aminoacylation,GO:0016874 ligase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-109 basu168 BSGatlas TSS 89566 89566 . - . ID=BSGatlas-TSS-85;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 90227 90282 . + . ID=BSGatlas-3'UTR-36;Parent=BSGatlas-transcript-123,BSGatlas-transcript-125,BSGatlas-transcript-127,BSGatlas-transcript-129,BSGatlas-transcript-131;comment="3'UTR" basu168 BSGatlas terminator 90229 90282 . + . ID=BSGatlas-terminator-49;Parent=BSGatlas-transcript-123,BSGatlas-transcript-125,BSGatlas-transcript-127,BSGatlas-transcript-129,BSGatlas-transcript-131;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -25.3[kcal/mol]" basu168 BSGatlas operon 90318 96221 . + . ID=BSGatlas-operon-39;color=#FF00CC basu168 BSGatlas transcript 90318 96221 . + . ID=BSGatlas-transcript-132;color=#FF9900;Parent=BSGatlas-operon-39,BSGatlas-gene-110,BSGatlas-gene-111,BSGatlas-gene-112,BSGatlas-gene-113,BSGatlas-gene-114,BSGatlas-gene-115,BSGatlas-gene-116,BSGatlas-gene-117,BSGatlas-gene-118,BSGatlas-gene-119,BSGatlas-gene-120,BSGatlas-gene-121;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-86 basu168 BSGatlas exon 90318 96221 . + . ID=BSGatlas-transcript-132_exon;Parent=BSGatlas-transcript-132 basu168 BSGatlas UTR 90318 90535 . + . ID=BSGatlas-5'UTR-65;Parent=BSGatlas-transcript-132;comment="5'UTR" basu168 BSGatlas TSS 90318 90318 . + . ID=BSGatlas-TSS-86;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 90346 90390 . - . ID=BSGatlas-terminator-50;comment="Based on: Nicolas et al. downshift, Energy: -16.9[kcal/mol]" basu168 BSGatlas gene 90536 92089 . + . ID=BSGatlas-gene-110;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnJ-16S;locus_tag=BSU_rRNA_6,BSU_RRNA_6;Parent=BSGatlas-operon-39 basu168 BSGatlas rRNA 90536 92089 . + . ID=BSGatlas-gene-110_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnJ-16S;Parent=BSGatlas-transcript-132;comment="ribosomal RNA-16S";synonyms="rrnJ-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-110 basu168 BSGatlas UTR 92090 92250 . + . ID=BSGatlas-internal_UTR-42;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 92251 95181 . + . ID=BSGatlas-gene-111;color=#CC33FF;Name=LSU-rRNA-archaea_rrnJ-23S;locus_tag=BSU_rRNA_7,BSU_RRNA_7;Parent=BSGatlas-operon-39 basu168 BSGatlas rRNA 92251 95181 . + . ID=BSGatlas-gene-111_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnJ-23S;Parent=BSGatlas-transcript-132;comment="ribosomal RNA-23S";synonyms="rrnJ-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-111 basu168 BSGatlas UTR 95182 95235 . + . ID=BSGatlas-internal_UTR-43;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 95236 95354 . + . ID=BSGatlas-gene-112;color=#CC33FF;Name=5S-rRNA_rrnJ-5S;locus_tag=BSU_rRNA_8,BSU_RRNA_8;Parent=BSGatlas-operon-39 basu168 BSGatlas rRNA 95236 95354 . + . ID=BSGatlas-gene-112_transcribed;color=#CC33FF;Name=5S-rRNA_rrnJ-5S;Parent=BSGatlas-transcript-132;comment="ribosomal RNA-5S";synonyms="rrnJ-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-112 basu168 BSGatlas UTR 95355 95373 . + . ID=BSGatlas-internal_UTR-44;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 95374 95450 . + . ID=BSGatlas-gene-113;color=#FFFF00;Name=trnJ-Val;locus_tag=BSU_tRNA_12,BSU_TRNA_12;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95374 95450 . + . ID=BSGatlas-gene-113_transcribed;color=#FFFF00;Name=trnJ-Val;Parent=BSGatlas-transcript-132;comment="tRNA-Val";synonyms="trnJ-Val";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-113 basu168 BSGatlas gene 95454 95530 . + . ID=BSGatlas-gene-114;color=#FFFF00;Name=trnJ-Thr;locus_tag=BSU_tRNA_13,BSU_TRNA_13;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95454 95530 . + . ID=BSGatlas-gene-114_transcribed;color=#FFFF00;Name=trnJ-Thr;Parent=BSGatlas-transcript-132;comment="tRNA-Thr";synonyms="trnJ-Thr";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-114 basu168 BSGatlas UTR 95531 95565 . + . ID=BSGatlas-internal_UTR-45;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 95566 95642 . + . ID=BSGatlas-gene-115;color=#FFFF00;Name=trnJ-Lys;locus_tag=BSU_tRNA_14,BSU_TRNA_14;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95566 95642 . + . ID=BSGatlas-gene-115_transcribed;color=#FFFF00;Name=trnJ-Lys;Parent=BSGatlas-transcript-132;comment="tRNA-Lys";synonyms="trnJ-Lys";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-115 basu168 BSGatlas gene 95648 95731 . + . ID=BSGatlas-gene-116;color=#FFFF00;Name=trnJ-Leu1;locus_tag=BSU_tRNA_15,BSU_TRNA_15;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95648 95731 . + . ID=BSGatlas-gene-116_transcribed;color=#FFFF00;Name=trnJ-Leu1;Parent=BSGatlas-transcript-132;comment="tRNA-Leu";synonyms="trnJ-Leu1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-116 basu168 BSGatlas UTR 95732 95770 . + . ID=BSGatlas-internal_UTR-46;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 95771 95846 . + . ID=BSGatlas-gene-117;color=#FFFF00;Name=trnJ-Gly;locus_tag=BSU_tRNA_16,BSU_TRNA_16;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95771 95846 . + . ID=BSGatlas-gene-117_transcribed;color=#FFFF00;Name=trnJ-Gly;Parent=BSGatlas-transcript-132;comment="tRNA-Gly";synonyms="trnJ-Gly";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-117 basu168 BSGatlas gene 95860 95946 . + . ID=BSGatlas-gene-118;color=#FFFF00;Name=trnJ-Leu2;locus_tag=BSU_tRNA_17,BSU_TRNA_17;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95860 95946 . + . ID=BSGatlas-gene-118_transcribed;color=#FFFF00;Name=trnJ-Leu2;Parent=BSGatlas-transcript-132;comment="tRNA-Leu";synonyms="trnJ-Leu2";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-118 basu168 BSGatlas gene 95955 96032 . + . ID=BSGatlas-gene-119;color=#FFFF00;Name=trnJ-Arg;locus_tag=BSU_tRNA_18,BSU_TRNA_18;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 95955 96032 . + . ID=BSGatlas-gene-119_transcribed;color=#FFFF00;Name=trnJ-Arg;Parent=BSGatlas-transcript-132;comment="tRNA-Arg";synonyms="trnJ-Arg";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-119 basu168 BSGatlas UTR 96033 96058 . + . ID=BSGatlas-internal_UTR-47;Parent=BSGatlas-transcript-132;comment="internal_UTR" basu168 BSGatlas gene 96059 96136 . + . ID=BSGatlas-gene-120;color=#FFFF00;Name=trnJ-Pro;locus_tag=BSU_tRNA_19,BSU_TRNA_19;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 96059 96136 . + . ID=BSGatlas-gene-120_transcribed;color=#FFFF00;Name=trnJ-Pro;Parent=BSGatlas-transcript-132;comment="tRNA-Pro";synonyms="trnJ-Pro";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-120 basu168 BSGatlas gene 96145 96221 . + . ID=BSGatlas-gene-121;color=#FFFF00;Name=trnJ-Ala;locus_tag=BSU_tRNA_20,BSU_TRNA_20;Parent=BSGatlas-operon-39 basu168 BSGatlas tRNA 96145 96221 . + . ID=BSGatlas-gene-121_transcribed;color=#FFFF00;Name=trnJ-Ala;Parent=BSGatlas-transcript-132;comment="tRNA-Ala";synonyms="trnJ-Ala";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-121 basu168 BSGatlas gene 96392 97945 . + . ID=BSGatlas-gene-122;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnW-16S;locus_tag=BSU_rRNA_9,BSU_RRNA_9 basu168 BSGatlas rRNA 96392 97945 . + . ID=BSGatlas-gene-122_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnW-16S;comment="ribosomal RNA-16S";synonyms="rrnW-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-122 basu168 BSGatlas gene 98107 101037 . + . ID=BSGatlas-gene-123;color=#CC33FF;Name=LSU-rRNA-archaea_rrnW-23S;locus_tag=BSU_rRNA_10,BSU_RRNA_10 basu168 BSGatlas rRNA 98107 101037 . + . ID=BSGatlas-gene-123_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnW-23S;comment="ribosomal RNA-23S";synonyms="rrnW-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-123 basu168 BSGatlas gene 101092 101211 . + . ID=BSGatlas-gene-124;color=#CC33FF;Name=5S-rRNA_rrnW-5S;locus_tag=BSU_rRNA_11,BSU_RRNA_11 basu168 BSGatlas rRNA 101092 101211 . + . ID=BSGatlas-gene-124_transcribed;color=#CC33FF;Name=5S-rRNA_rrnW-5S;comment="ribosomal RNA-5S";synonyms="rrnW-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-124 basu168 BSGatlas operon 101291 108614 . + . ID=BSGatlas-operon-40;color=#FF00CC basu168 BSGatlas transcript 101291 108614 . + . ID=BSGatlas-transcript-134;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128,BSGatlas-gene-129,BSGatlas-gene-130;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-87 basu168 BSGatlas exon 101291 108614 . + . ID=BSGatlas-transcript-134_exon;Parent=BSGatlas-transcript-134 basu168 BSGatlas transcript 101291 106021 . + . ID=BSGatlas-transcript-133;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-87 basu168 BSGatlas exon 101291 106021 . + . ID=BSGatlas-transcript-133_exon;Parent=BSGatlas-transcript-133 basu168 BSGatlas UTR 101291 101448 . + . ID=BSGatlas-5'UTR-66;Parent=BSGatlas-transcript-133,BSGatlas-transcript-134;comment="5'UTR" basu168 BSGatlas TSS 101291 101291 . + . ID=BSGatlas-TSS-87;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 101360 108614 . + . ID=BSGatlas-transcript-136;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128,BSGatlas-gene-129,BSGatlas-gene-130;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-88 basu168 BSGatlas exon 101360 108614 . + . ID=BSGatlas-transcript-136_exon;Parent=BSGatlas-transcript-136 basu168 BSGatlas transcript 101360 106021 . + . ID=BSGatlas-transcript-135;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-88 basu168 BSGatlas exon 101360 106021 . + . ID=BSGatlas-transcript-135_exon;Parent=BSGatlas-transcript-135 basu168 BSGatlas UTR 101360 101448 . + . ID=BSGatlas-5'UTR-67;Parent=BSGatlas-transcript-135,BSGatlas-transcript-136;comment="5'UTR" basu168 BSGatlas TSS 101360 101360 . + . ID=BSGatlas-TSS-88;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,8793870" basu168 BSGatlas transcript 101409 108614 . + . ID=BSGatlas-transcript-138;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128,BSGatlas-gene-129,BSGatlas-gene-130;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-89 basu168 BSGatlas exon 101409 108614 . + . ID=BSGatlas-transcript-138_exon;Parent=BSGatlas-transcript-138 basu168 BSGatlas transcript 101409 106021 . + . ID=BSGatlas-transcript-137;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-125,BSGatlas-gene-126,BSGatlas-gene-127,BSGatlas-gene-128;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-89 basu168 BSGatlas exon 101409 106021 . + . ID=BSGatlas-transcript-137_exon;Parent=BSGatlas-transcript-137 basu168 BSGatlas UTR 101409 101448 . + . ID=BSGatlas-5'UTR-68;Parent=BSGatlas-transcript-137,BSGatlas-transcript-138;comment="5'UTR" basu168 BSGatlas TSS 101409 101409 . + . ID=BSGatlas-TSS-89;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,8793870" basu168 BSGatlas gene 101449 101913 . + . ID=BSGatlas-gene-125;color=#1E90FF;Name=ctsR;locus_tag=BSU00830,BSU_00830;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 101449 101913 . + 0 ID=BSGatlas-gene-125_transcribed;color=#1E90FF;Name=ctsR;Parent=BSGatlas-transcript-133,BSGatlas-transcript-134,BSGatlas-transcript-135,BSGatlas-transcript-136,BSGatlas-transcript-137,BSGatlas-transcript-138;comment="transcriptional regulator of class III stressgenes";synonyms="ctsR,yacG";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.4 Additional proteins involved in proteolysis,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.4 Heat shock proteins,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0006950 response to stress";derives_from=BSGatlas-gene-125 basu168 BSGatlas TSS 101566 101566 . - . ID=BSGatlas-TSS-90;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 101927 102484 . + . ID=BSGatlas-gene-126;color=#1E90FF;Name=mcsA;locus_tag=BSU00840,BSU_00840;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 101927 102484 . + 0 ID=BSGatlas-gene-126_transcribed;color=#1E90FF;Name=mcsA;Parent=BSGatlas-transcript-133,BSGatlas-transcript-134,BSGatlas-transcript-135,BSGatlas-transcript-136,BSGatlas-transcript-137,BSGatlas-transcript-138;comment="activator of protein kinase McsB";synonyms="mcsA,yacH";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.4 Heat shock proteins,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";derives_from=BSGatlas-gene-126 basu168 BSGatlas gene 102484 103575 . + . ID=BSGatlas-gene-127;color=#1E90FF;Name=mcsB;locus_tag=BSU00850,BSU_00850;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 102484 103575 . + 0 ID=BSGatlas-gene-127_transcribed;color=#1E90FF;Name=mcsB;Parent=BSGatlas-transcript-133,BSGatlas-transcript-134,BSGatlas-transcript-135,BSGatlas-transcript-136,BSGatlas-transcript-137,BSGatlas-transcript-138;comment="protein arginine kinase";synonyms="mcsB,yacI";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.4 Heat shock proteins";ec="2.7.3.3,EC-2.7.14.1";go="GO:0000166 nucleotide binding,GO:0003824 catalytic activity,GO:0005524 ATP binding,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016775 phosphotransferase activity, nitrogenous group as acceptor,GO:0018109 peptidyl-arginine phosphorylation,GO:1990424 protein arginine kinase activity";derives_from=BSGatlas-gene-127 basu168 BSGatlas gene 103572 106004 . + . ID=BSGatlas-gene-128;color=#1E90FF;Name=clpC;locus_tag=BSU00860,BSU_00860;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 103572 106004 . + 0 ID=BSGatlas-gene-128_transcribed;color=#1E90FF;Name=clpC;Parent=BSGatlas-transcript-133,BSGatlas-transcript-134,BSGatlas-transcript-135,BSGatlas-transcript-136,BSGatlas-transcript-137,BSGatlas-transcript-138;comment="class III stress response-related ATPase, AAA+superfamily";synonyms="clpC,mecB";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.4 Additional proteins involved in proteolysis,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.4 Heat shock proteins,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0000166 nucleotide binding,GO:0005515 protein binding,GO:0005524 ATP binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0017111 nucleoside-triphosphatase activity,GO:0019538 protein metabolic process,GO:0030420 establishment of competence for transformation";derives_from=BSGatlas-gene-128 basu168 BSGatlas terminator 105977 106021 . + . ID=BSGatlas-terminator-51;Parent=BSGatlas-transcript-133,BSGatlas-transcript-135,BSGatlas-transcript-137;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas UTR 106005 106095 . + . ID=BSGatlas-internal_UTR-48;Parent=BSGatlas-transcript-134,BSGatlas-transcript-136,BSGatlas-transcript-138;comment="internal_UTR" basu168 BSGatlas UTR 106005 106021 . + . ID=BSGatlas-3'UTR-37;Parent=BSGatlas-transcript-133,BSGatlas-transcript-135,BSGatlas-transcript-137;comment="3'UTR" basu168 BSGatlas transcript 106096 108614 . + . ID=BSGatlas-transcript-139;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-129,BSGatlas-gene-130;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-91 basu168 BSGatlas exon 106096 108614 . + . ID=BSGatlas-transcript-139_exon;Parent=BSGatlas-transcript-139 basu168 BSGatlas gene 106096 107472 . + . ID=BSGatlas-gene-129;color=#1E90FF;Name=radA;locus_tag=BSU00870,BSU_00870;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 106096 107472 . + 0 ID=BSGatlas-gene-129_transcribed;color=#1E90FF;Name=radA;Parent=BSGatlas-transcript-134,BSGatlas-transcript-136,BSGatlas-transcript-138,BSGatlas-transcript-139;comment="DNA repair protein; 6-O-methylguanine-DNAmethyltransferase";synonyms="radA,sms,yacJ";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.3 Metabolism of signalling nucleotides,SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.4 Heat shock proteins";ec="2.1.1.63,EC-2.1.1.63";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003684 damaged DNA binding,GO:0005524 ATP binding,GO:0006259 DNA metabolic process,GO:0006281 DNA repair,GO:0006974 cellular response to DNA damage stimulus,GO:0008094 DNA-dependent ATPase activity,GO:0017111 nucleoside-triphosphatase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-129 basu168 BSGatlas TSS 106576 106576 . + . ID=BSGatlas-TSS-91;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 107476 108614 . + . ID=BSGatlas-transcript-140;color=#FF9900;Parent=BSGatlas-operon-40,BSGatlas-gene-130;comment="Based on: SubtiWiki" basu168 BSGatlas exon 107476 108614 . + . ID=BSGatlas-transcript-140_exon;Parent=BSGatlas-transcript-140 basu168 BSGatlas gene 107476 108558 . + . ID=BSGatlas-gene-130;color=#1E90FF;Name=disA;locus_tag=BSU00880,BSU_00880;Parent=BSGatlas-operon-40 basu168 BSGatlas CDS 107476 108558 . + 0 ID=BSGatlas-gene-130_transcribed;color=#1E90FF;Name=disA;Parent=BSGatlas-transcript-134,BSGatlas-transcript-136,BSGatlas-transcript-138,BSGatlas-transcript-139,BSGatlas-transcript-140;comment="diadenylate cyclase; DNA integrity scanningprotein; cell cycle checkpoint DNA scanning protein";synonyms="disA,yacK";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.8 Cell division,SW 1.1.8.2 Other genes,SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.3 Metabolism of signalling nucleotides,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.3 Sporulation/ other,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 4.3.4 Heat shock proteins";ec="2.7.7.85,EC-2.7.7.85";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0003684 damaged DNA binding,GO:0005524 ATP binding,GO:0006281 DNA repair,GO:0006974 cellular response to DNA damage stimulus,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0019932 second-messenger-mediated signaling,GO:0072421 detection of DNA damage stimulus involved in DNA damage checkpoint";derives_from=BSGatlas-gene-130 basu168 BSGatlas UTR 108559 108614 . + . ID=BSGatlas-3'UTR-38;Parent=BSGatlas-transcript-134,BSGatlas-transcript-136,BSGatlas-transcript-138,BSGatlas-transcript-139,BSGatlas-transcript-140;comment="3'UTR" basu168 BSGatlas terminator 108566 108614 . + . ID=BSGatlas-terminator-52;Parent=BSGatlas-transcript-134,BSGatlas-transcript-136,BSGatlas-transcript-138,BSGatlas-transcript-139,BSGatlas-transcript-140;comment="Based on: BsubCyc,DBTBS, Energy: -4.4[kcal/mol]" basu168 BSGatlas operon 108598 110956 . + . ID=BSGatlas-operon-41;color=#FF00CC basu168 BSGatlas transcript 108598 110956 . + . ID=BSGatlas-transcript-141;color=#FF9900;Parent=BSGatlas-operon-41,BSGatlas-gene-131,BSGatlas-gene-132,BSGatlas-gene-133;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-92 basu168 BSGatlas exon 108598 110956 . + . ID=BSGatlas-transcript-141_exon;Parent=BSGatlas-transcript-141 basu168 BSGatlas UTR 108598 108673 . + . ID=BSGatlas-5'UTR-69;Parent=BSGatlas-transcript-141;comment="5'UTR" basu168 BSGatlas TSS 108598 108598 . + . ID=BSGatlas-TSS-92;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 10482513,17962296" basu168 BSGatlas gene 108674 109774 . + . ID=BSGatlas-gene-131;color=#1E90FF;Name=yacL;locus_tag=BSU00890,BSU_00890;Parent=BSGatlas-operon-41 basu168 BSGatlas CDS 108674 109774 . + 0 ID=BSGatlas-gene-131_transcribed;color=#1E90FF;Name=yacL;Parent=BSGatlas-transcript-141;comment="putative membrane protein possibly involved inRNA binding";synonyms="yacL";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";go="GO:0004518 nuclease activity,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0046872 metal ion binding,GO:0090305 nucleic acid phosphodiester bond hydrolysis";derives_from=BSGatlas-gene-131 basu168 BSGatlas terminator 109574 109618 . - . ID=BSGatlas-terminator-53;comment="Based on: Nicolas et al. downshift, Energy: -11.8[kcal/mol]" basu168 BSGatlas gene 109789 110487 . + . ID=BSGatlas-gene-132;color=#1E90FF;Name=ispD;locus_tag=BSU00900,BSU_00900;Parent=BSGatlas-operon-41 basu168 BSGatlas CDS 109789 110487 . + 0 ID=BSGatlas-gene-132_transcribed;color=#1E90FF;Name=ispD;Parent=BSGatlas-transcript-141;comment="2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase, nonmevalonate isoprenoid pathway";synonyms="ispD,yacM";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.3 Biosynthesis of isoprenoids,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.7.60,EC-2.7.7.60";go="GO:0003824 catalytic activity,GO:0008299 isoprenoid biosynthetic process,GO:0016114 terpenoid biosynthetic process,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway,GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity";derives_from=BSGatlas-gene-132 basu168 BSGatlas gene 110480 110956 . + . ID=BSGatlas-gene-133;color=#1E90FF;Name=ispF;locus_tag=BSU00910,BSU_00910;Parent=BSGatlas-operon-41 basu168 BSGatlas CDS 110480 110956 . + 0 ID=BSGatlas-gene-133_transcribed;color=#1E90FF;Name=ispF;Parent=BSGatlas-transcript-141;comment="2-C-methyl-D-erythritol-2,4-cyclodiphosphatesynthase";synonyms="ispF,yacN";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.3 Biosynthesis of isoprenoids,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.1 Essential genes";ec="4.6.1.12,EC-4.6.1.12";go="GO:0008299 isoprenoid biosynthetic process,GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,GO:0016114 terpenoid biosynthetic process,GO:0016829 lyase activity,GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-133 basu168 BSGatlas operon 111003 116537 . + . ID=BSGatlas-operon-42;color=#FF00CC basu168 BSGatlas transcript 111003 116537 . + . ID=BSGatlas-transcript-143;color=#FF9900;Parent=BSGatlas-operon-42,BSGatlas-gene-134,BSGatlas-gene-135,BSGatlas-gene-136,BSGatlas-gene-137,BSGatlas-gene-138,BSGatlas-gene-139,BSGatlas-gene-140;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-93 basu168 BSGatlas exon 111003 116537 . + . ID=BSGatlas-transcript-143_exon;Parent=BSGatlas-transcript-143 basu168 BSGatlas transcript 111003 112766 . + . ID=BSGatlas-transcript-142;color=#FF9900;Parent=BSGatlas-operon-42,BSGatlas-gene-134,BSGatlas-gene-135;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-93 basu168 BSGatlas exon 111003 112766 . + . ID=BSGatlas-transcript-142_exon;Parent=BSGatlas-transcript-142 basu168 BSGatlas UTR 111003 111046 . + . ID=BSGatlas-5'UTR-70;Parent=BSGatlas-transcript-142,BSGatlas-transcript-143;comment="5'UTR" basu168 BSGatlas TSS 111003 111003 . + . ID=BSGatlas-TSS-93;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7510287" basu168 BSGatlas gene 111047 112498 . + . ID=BSGatlas-gene-134;color=#1E90FF;Name=gltX;locus_tag=BSU00920,BSU_00920;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 111047 112498 . + 0 ID=BSGatlas-gene-134_transcribed;color=#1E90FF;Name=gltX;Parent=BSGatlas-transcript-142,BSGatlas-transcript-143;comment="glutamyl-tRNA synthetase";synonyms="gltX";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.10 Aminoacyl-tRNA synthetases,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";ec="6.1.1.17,6.1.1.24;6.1.1.17,EC-6.1.1.17";go="GO:0000049 tRNA binding,GO:0000166 nucleotide binding,GO:0004812 aminoacyl-tRNA ligase activity,GO:0004818 glutamate-tRNA ligase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006418 tRNA aminoacylation for protein translation,GO:0006424 glutamyl-tRNA aminoacylation,GO:0016874 ligase activity,GO:0016876 NA,GO:0043039 tRNA aminoacylation,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-134 basu168 BSGatlas UTR 111999 112799 . + . ID=BSGatlas-5'UTR-71;comment="5'UTR" basu168 BSGatlas TSS 111999 111999 . + . ID=BSGatlas-TSS-94;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 112500 112731 . + . ID=BSGatlas-gene-135;color=#999999;Name=T-box;Parent=BSGatlas-operon-42 basu168 BSGatlas riboswitch 112500 112731 . + . ID=BSGatlas-gene-135_transcribed;color=#999999;Name=T-box;Parent=BSGatlas-transcript-142,BSGatlas-transcript-143;derives_from=BSGatlas-gene-135 basu168 BSGatlas terminator 112716 112766 . + . ID=BSGatlas-terminator-54;Parent=BSGatlas-transcript-142;comment="Based on: BsubCyc,DBTBS, Energy: -23.9[kcal/mol]" basu168 BSGatlas UTR 112732 112799 . + . ID=BSGatlas-internal_UTR-49;Parent=BSGatlas-transcript-143;comment="internal_UTR" basu168 BSGatlas UTR 112732 112766 . + . ID=BSGatlas-3'UTR-39;Parent=BSGatlas-transcript-142;comment="3'UTR" basu168 BSGatlas gene 112800 113453 . + . ID=BSGatlas-gene-136;color=#1E90FF;Name=cysE;locus_tag=BSU00930,BSU_00930;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 112800 113453 . + 0 ID=BSGatlas-gene-136_transcribed;color=#1E90FF;Name=cysE;Parent=BSGatlas-transcript-143;comment="serine O-acetyltransferase";synonyms="cysA,cysE";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.9 Biosynthesis/ acquisition of cysteine,SW 3 Information processing,SW 3.1 Genetics,SW 3.1.9 Newly identified competence genes";ec="2.3.1.30,EC-2.3.1.30";go="GO:0005737 cytoplasm,GO:0006535 cysteine biosynthetic process from serine,GO:0008652 cellular amino acid biosynthetic process,GO:0009001 serine O-acetyltransferase activity,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups,GO:0019344 cysteine biosynthetic process";derives_from=BSGatlas-gene-136 basu168 BSGatlas gene 113450 114850 . + . ID=BSGatlas-gene-137;color=#1E90FF;Name=cysS;locus_tag=BSU00940,BSU_00940;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 113450 114850 . + 0 ID=BSGatlas-gene-137_transcribed;color=#1E90FF;Name=cysS;Parent=BSGatlas-transcript-143;comment="dual cysteinyl-tRNA synthetase; cysteinepersulfide synthase";synonyms="cysS,snpA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.10 Aminoacyl-tRNA synthetases,SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.1.1.16,EC-6.1.1.16";go="GO:0000166 nucleotide binding,GO:0004812 aminoacyl-tRNA ligase activity,GO:0004817 cysteine-tRNA ligase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006412 translation,GO:0006418 tRNA aminoacylation for protein translation,GO:0006423 cysteinyl-tRNA aminoacylation,GO:0008270 zinc ion binding,GO:0016874 ligase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-137 basu168 BSGatlas gene 114854 115285 . + . ID=BSGatlas-gene-138;color=#1E90FF;Name=mrnC;locus_tag=BSU00950,BSU_00950;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 114854 115285 . + 0 ID=BSGatlas-gene-138_transcribed;color=#1E90FF;Name=mrnC;Parent=BSGatlas-transcript-143;comment="ribonuclease for 23S RNA maturation, mini-RNaseIII";synonyms="mrnC,yazC";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.4 RNases,SW 3.2.4.2 Endoribonucleases,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.2 rRNA modification and maturation";go="GO:0003723 RNA binding,GO:0004518 nuclease activity,GO:0004519 endonuclease activity,GO:0004525 ribonuclease III activity,GO:0004540 ribonuclease activity,GO:0005737 cytoplasm,GO:0006364 rRNA processing,GO:0006396 RNA processing,GO:0016787 hydrolase activity,GO:0019843 rRNA binding,GO:0042254 ribosome biogenesis,GO:0090305 nucleic acid phosphodiester bond hydrolysis,GO:0090501 RNA phosphodiester bond hydrolysis,GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic";derives_from=BSGatlas-gene-138 basu168 BSGatlas gene 115269 116018 . + . ID=BSGatlas-gene-139;color=#1E90FF;Name=rlmB;locus_tag=BSU00960,BSU_00960;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 115269 116018 . + 0 ID=BSGatlas-gene-139_transcribed;color=#1E90FF;Name=rlmB;Parent=BSGatlas-transcript-143;comment="23S rRNA (Gm2251)-methyltransferase";synonyms="rlmB,yacO";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.2 rRNA modification and maturation";ec="2.1.1.-,2.1.1.185";go="GO:0001510 RNA methylation,GO:0003723 RNA binding,GO:0006396 RNA processing,GO:0008168 methyltransferase activity,GO:0008173 RNA methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-139 basu168 BSGatlas gene 116025 116537 . + . ID=BSGatlas-gene-140;color=#1E90FF;Name=raeA;locus_tag=BSU00970,BSU_00970;Parent=BSGatlas-operon-42 basu168 BSGatlas CDS 116025 116537 . + 0 ID=BSGatlas-gene-140_transcribed;color=#1E90FF;Name=raeA;Parent=BSGatlas-transcript-143;comment="ribosome-dependent mRNA endonuclease";synonyms="rae1,yacP";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.4 RNases,SW 3.2.4.2 Endoribonucleases";derives_from=BSGatlas-gene-140 basu168 BSGatlas operon 116575 117711 . + . ID=BSGatlas-operon-43;color=#FF00CC basu168 BSGatlas transcript 116575 117711 . + . ID=BSGatlas-transcript-145;color=#FF9900;Parent=BSGatlas-operon-43,BSGatlas-gene-141,BSGatlas-gene-142,BSGatlas-gene-143;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-95 basu168 BSGatlas exon 116575 117711 . + . ID=BSGatlas-transcript-145_exon;Parent=BSGatlas-transcript-145 basu168 BSGatlas transcript 116575 117256 . + . ID=BSGatlas-transcript-144;color=#FF9900;Parent=BSGatlas-operon-43,BSGatlas-gene-141;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-95 basu168 BSGatlas exon 116575 117256 . + . ID=BSGatlas-transcript-144_exon;Parent=BSGatlas-transcript-144 basu168 BSGatlas UTR 116575 116599 . + . ID=BSGatlas-5'UTR-72;Parent=BSGatlas-transcript-144,BSGatlas-transcript-145;comment="5'UTR" basu168 BSGatlas TSS 116575 116575 . + . ID=BSGatlas-TSS-95;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,1898930" basu168 BSGatlas gene 116600 117256 . + . ID=BSGatlas-gene-141;color=#1E90FF;Name=sigH;locus_tag=BSU00980,BSU_00980;Parent=BSGatlas-operon-43 basu168 BSGatlas CDS 116600 117256 . + 0 ID=BSGatlas-gene-141_transcribed;color=#1E90FF;Name=sigH;Parent=BSGatlas-transcript-144,BSGatlas-transcript-145;comment="RNA polymerase sigma-30 factor (sigma(H))";synonyms="sigH,spo0H";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.2 Sigma factors,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.1 Sigma factors";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006352 DNA-templated transcription, initiation,GO:0006355 regulation of transcription, DNA-templated,GO:0016987 sigma factor activity,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-141 basu168 BSGatlas terminator 117032 117076 . - . ID=BSGatlas-terminator-55;comment="Based on: Nicolas et al. downshift, Energy: -10.3[kcal/mol]" basu168 BSGatlas UTR 117257 117348 . + . ID=BSGatlas-internal_UTR-50;Parent=BSGatlas-transcript-145;comment="internal_UTR" basu168 BSGatlas gene 117349 117498 . + . ID=BSGatlas-gene-142;color=#1E90FF;Name=rpmGB;locus_tag=BSU00990,BSU_00990;Parent=BSGatlas-operon-43 basu168 BSGatlas CDS 117349 117498 . + 0 ID=BSGatlas-gene-142_transcribed;color=#1E90FF;Name=rpmGB;Parent=BSGatlas-transcript-145;comment="ribosomal protein L33";synonyms="rpmG,rpmGB";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-142 basu168 BSGatlas UTR 117499 117531 . + . ID=BSGatlas-internal_UTR-51;Parent=BSGatlas-transcript-145;comment="internal_UTR" basu168 BSGatlas gene 117532 117711 . + . ID=BSGatlas-gene-143;color=#1E90FF;Name=secE;locus_tag=BSU01000,BSU_01000;Parent=BSGatlas-operon-43 basu168 BSGatlas CDS 117532 117711 . + 0 ID=BSGatlas-gene-143_transcribed;color=#1E90FF;Name=secE;Parent=BSGatlas-transcript-145;comment="preprotein translocase subunit";synonyms="secE";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins";go="GO:0005622 intracellular,GO:0005886 plasma membrane,GO:0006605 protein targeting,GO:0006810 transport,GO:0008565 protein transporter activity,GO:0009306 protein secretion,GO:0015031 protein transport,GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0043952 protein transport by the Sec complex,GO:0065002 intracellular protein transmembrane transport";derives_from=BSGatlas-gene-143 basu168 BSGatlas terminator 117861 117905 . - . ID=BSGatlas-terminator-56;comment="Based on: Nicolas et al. downshift, Energy: -10.3[kcal/mol]" basu168 BSGatlas gene 117890 118423 . + . ID=BSGatlas-gene-144;color=#1E90FF;Name=nusG;locus_tag=BSU01010,BSU_01010 basu168 BSGatlas CDS 117890 118423 . + 0 ID=BSGatlas-gene-144_transcribed;color=#1E90FF;Name=nusG;comment="RNA polymerase elongation pause factor";synonyms="nusG";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.3 Transcription elongation/ termination";go="GO:0006351 transcription, DNA-templated,GO:0006353 DNA-templated transcription, termination,GO:0006354 DNA-templated transcription, elongation,GO:0006355 regulation of transcription, DNA-templated,GO:0031564 transcription antitermination,GO:0032784 regulation of DNA-templated transcription, elongation";derives_from=BSGatlas-gene-144 basu168 BSGatlas TSS 117978 117978 . - . ID=BSGatlas-TSS-96;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 118452 120978 . + . ID=BSGatlas-operon-44;color=#FF00CC basu168 BSGatlas transcript 118452 120978 . + . ID=BSGatlas-transcript-147;color=#FF9900;Parent=BSGatlas-operon-44,BSGatlas-gene-145,BSGatlas-gene-146,BSGatlas-gene-147,BSGatlas-gene-148,BSGatlas-gene-149;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-97 basu168 BSGatlas transcript 118452 120978 . + . ID=BSGatlas-transcript-148;color=#FF9900;Parent=BSGatlas-operon-44,BSGatlas-gene-145,BSGatlas-gene-146,BSGatlas-gene-147,BSGatlas-gene-148,BSGatlas-gene-149;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-97 basu168 BSGatlas exon 118452 120978 . + . ID=BSGatlas-transcript-147_exon;Parent=BSGatlas-transcript-147 basu168 BSGatlas exon 118452 120978 . + . ID=BSGatlas-transcript-148_exon;Parent=BSGatlas-transcript-148 basu168 BSGatlas transcript 118452 119995 . + . ID=BSGatlas-transcript-146;color=#FF9900;Parent=BSGatlas-operon-44,BSGatlas-gene-145,BSGatlas-gene-146,BSGatlas-gene-147;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-97 basu168 BSGatlas exon 118452 119995 . + . ID=BSGatlas-transcript-146_exon;Parent=BSGatlas-transcript-146 basu168 BSGatlas UTR 118452 118590 . + . ID=BSGatlas-5'UTR-73;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="5'UTR" basu168 BSGatlas TSS 118452 118452 . + . ID=BSGatlas-TSS-97;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 118591 119016 . + . ID=BSGatlas-gene-145;color=#1E90FF;Name=rplK;locus_tag=BSU01020,BSU_01020;Parent=BSGatlas-operon-44 basu168 BSGatlas CDS 118591 119016 . + 0 ID=BSGatlas-gene-145_transcribed;color=#1E90FF;Name=rplK;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="ribosomal protein L11 (BL11)";synonyms="relC,rplK,tsp";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.9 Newly identified competence genes,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA,GO:0046677 response to antibiotic,GO:0070180 large ribosomal subunit rRNA binding";derives_from=BSGatlas-gene-145 basu168 BSGatlas UTR 119017 119110 . + . ID=BSGatlas-internal_UTR-52;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="internal_UTR" basu168 BSGatlas gene 119111 119809 . + . ID=BSGatlas-gene-146;color=#1E90FF;Name=rplA;locus_tag=BSU01030,BSU_01030;Parent=BSGatlas-operon-44 basu168 BSGatlas CDS 119111 119809 . + 0 ID=BSGatlas-gene-146_transcribed;color=#1E90FF;Name=rplA;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="ribosomal protein L1 (BL1)";synonyms="rplA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005515 protein binding,GO:0005840 ribosome,GO:0006412 translation,GO:0006417 regulation of translation,GO:0015934 large ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-146 basu168 BSGatlas terminator 119761 119805 . - . ID=BSGatlas-terminator-57;comment="Based on: Nicolas et al. downshift, Energy: -10.3[kcal/mol]" basu168 BSGatlas UTR 119810 119853 . + . ID=BSGatlas-internal_UTR-53;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="internal_UTR" basu168 BSGatlas gene 119854 119995 . + . ID=BSGatlas-gene-147;color=#999999;Name=L10-leader_ldlJ;locus_tag=BSU_misc_RNA_3,BSU_MISC_RNA_3;Parent=BSGatlas-operon-44 basu168 BSGatlas riboswitch 119854 119995 . + . ID=BSGatlas-gene-147_transcribed;color=#999999;Name=L10-leader_ldlJ;Parent=BSGatlas-transcript-146,BSGatlas-transcript-147,BSGatlas-transcript-148;comment="L10_leader";synonyms="BSU_misc_RNA_3";derives_from=BSGatlas-gene-147 basu168 BSGatlas TSS 119871 119871 . - . ID=BSGatlas-TSS-98;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 119905 119949 . + . ID=BSGatlas-terminator-58;Parent=BSGatlas-transcript-146;comment="Based on: Nicolas et al. downshift, Energy: -13.2[kcal/mol]" basu168 BSGatlas UTR 119996 120060 . + . ID=BSGatlas-internal_UTR-54;Parent=BSGatlas-transcript-147,BSGatlas-transcript-148;comment="internal_UTR" basu168 BSGatlas transcript 120061 120978 . + . ID=BSGatlas-transcript-149;color=#FF9900;Parent=BSGatlas-operon-44,BSGatlas-gene-148,BSGatlas-gene-149;comment="Based on: BsubCyc,SubtiWiki" basu168 BSGatlas transcript 120061 120978 . + . ID=BSGatlas-transcript-150;color=#FF9900;Parent=BSGatlas-operon-44,BSGatlas-gene-148,BSGatlas-gene-149;comment="Based on: BsubCyc,SubtiWiki" basu168 BSGatlas exon 120061 120978 . + . ID=BSGatlas-transcript-149_exon;Parent=BSGatlas-transcript-149 basu168 BSGatlas exon 120061 120978 . + . ID=BSGatlas-transcript-150_exon;Parent=BSGatlas-transcript-150 basu168 BSGatlas gene 120061 120561 . + . ID=BSGatlas-gene-148;color=#1E90FF;Name=rplJ;locus_tag=BSU01040,BSU_01040;Parent=BSGatlas-operon-44 basu168 BSGatlas CDS 120061 120561 . + 0 ID=BSGatlas-gene-148_transcribed;color=#1E90FF;Name=rplJ;Parent=BSGatlas-transcript-147,BSGatlas-transcript-148,BSGatlas-transcript-149,BSGatlas-transcript-150;comment="ribosomal protein L10 (BL5)";synonyms="rplJ";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005622 intracellular,GO:0005840 ribosome,GO:0006412 translation,GO:0006950 response to stress,GO:0019843 rRNA binding,GO:0030529 NA,GO:0042254 ribosome biogenesis,GO:0070180 large ribosomal subunit rRNA binding";derives_from=BSGatlas-gene-148 basu168 BSGatlas UTR 120562 120606 . + . ID=BSGatlas-internal_UTR-55;Parent=BSGatlas-transcript-147,BSGatlas-transcript-148,BSGatlas-transcript-149,BSGatlas-transcript-150;comment="internal_UTR" basu168 BSGatlas gene 120607 120978 . + . ID=BSGatlas-gene-149;color=#1E90FF;Name=rplL;locus_tag=BSU01050,BSU_01050;Parent=BSGatlas-operon-44 basu168 BSGatlas CDS 120607 120978 . + 0 ID=BSGatlas-gene-149_transcribed;color=#1E90FF;Name=rplL;Parent=BSGatlas-transcript-147,BSGatlas-transcript-148,BSGatlas-transcript-149,BSGatlas-transcript-150;comment="ribosomal protein L12 (BL9)";synonyms="rplL";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins";go="GO:0003735 structural constituent of ribosome,GO:0005515 protein binding,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-149 basu168 BSGatlas terminator 120872 120916 . + . ID=BSGatlas-terminator-59;Parent=BSGatlas-transcript-147,BSGatlas-transcript-149;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas terminator 120945 120989 . + . ID=BSGatlas-terminator-60;Parent=BSGatlas-transcript-148,BSGatlas-transcript-150;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas gene 121068 121673 . + . ID=BSGatlas-gene-150;color=#1E90FF;Name=rlmG;locus_tag=BSU01060,BSU_01060 basu168 BSGatlas CDS 121068 121673 . + 0 ID=BSGatlas-gene-150_transcribed;color=#1E90FF;Name=rlmG;comment="23S rRNA m2G1835 methyltransferase";synonyms="ybaA,ybxB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="2.1.1.174";go="GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-150 basu168 BSGatlas operon 121706 129161 . + . ID=BSGatlas-operon-45;color=#FF00CC basu168 BSGatlas transcript 121706 129161 . + . ID=BSGatlas-transcript-152;color=#FF9900;Parent=BSGatlas-operon-45,BSGatlas-gene-151,BSGatlas-gene-152;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-99 basu168 BSGatlas exon 121706 129161 . + . ID=BSGatlas-transcript-152_exon;Parent=BSGatlas-transcript-152 basu168 BSGatlas transcript 121706 125500 . + . ID=BSGatlas-transcript-151;color=#FF9900;Parent=BSGatlas-operon-45,BSGatlas-gene-151;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-99 basu168 BSGatlas exon 121706 125500 . + . ID=BSGatlas-transcript-151_exon;Parent=BSGatlas-transcript-151 basu168 BSGatlas UTR 121706 121918 . + . ID=BSGatlas-5'UTR-74;Parent=BSGatlas-transcript-151,BSGatlas-transcript-152;comment="5'UTR" basu168 BSGatlas TSS 121706 121706 . + . ID=BSGatlas-TSS-99;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,7657605" basu168 BSGatlas gene 121919 125500 . + . ID=BSGatlas-gene-151;color=#1E90FF;Name=rpoB;locus_tag=BSU01070,BSU_01070;Parent=BSGatlas-operon-45 basu168 BSGatlas CDS 121919 125500 . + 0 ID=BSGatlas-gene-151_transcribed;color=#1E90FF;Name=rpoB;Parent=BSGatlas-transcript-151,BSGatlas-transcript-152;comment="RNA polymerase (beta subunit)";synonyms="rpoB";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.1 RNA polymerase,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";ec="2.7.7.6";go="GO:0003677 DNA binding,GO:0003899 DNA-directed 5'-3' RNA polymerase activity,GO:0006351 transcription, DNA-templated,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0032549 ribonucleoside binding,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-151 basu168 BSGatlas TSS 123507 123507 . - . ID=BSGatlas-TSS-100;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 124380 124380 . - . ID=BSGatlas-TSS-101;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 125501 125561 . + . ID=BSGatlas-internal_UTR-56;Parent=BSGatlas-transcript-152;comment="internal_UTR" basu168 BSGatlas gene 125562 129161 . + . ID=BSGatlas-gene-152;color=#1E90FF;Name=rpoC;locus_tag=BSU01080,BSU_01080;Parent=BSGatlas-operon-45 basu168 BSGatlas CDS 125562 129161 . + 0 ID=BSGatlas-gene-152_transcribed;color=#1E90FF;Name=rpoC;Parent=BSGatlas-transcript-152;comment="RNA polymerase (beta' subunit)";synonyms="rpoC";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.1 RNA polymerase,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";ec="2.7.7.6";go="GO:0000428 DNA-directed RNA polymerase complex,GO:0003677 DNA binding,GO:0003899 DNA-directed 5'-3' RNA polymerase activity,GO:0005515 protein binding,GO:0006351 transcription, DNA-templated,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-152 basu168 BSGatlas terminator 128604 128648 . - . ID=BSGatlas-terminator-61;comment="Based on: Nicolas et al. downshift, Energy: -7.5[kcal/mol]" basu168 BSGatlas TSS 128780 128780 . - . ID=BSGatlas-TSS-102;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 129088 129132 . - . ID=BSGatlas-terminator-62;comment="Based on: Nicolas et al. downshift, Energy: -7.5[kcal/mol]" basu168 BSGatlas operon 129285 134089 . + . ID=BSGatlas-operon-46;color=#FF00CC basu168 BSGatlas transcript 129285 134089 . + . ID=BSGatlas-transcript-153;color=#FF9900;Parent=BSGatlas-operon-46,BSGatlas-gene-153,BSGatlas-gene-154,BSGatlas-gene-155,BSGatlas-gene-156,BSGatlas-gene-157;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-103 basu168 BSGatlas exon 129285 134089 . + . ID=BSGatlas-transcript-153_exon;Parent=BSGatlas-transcript-153 basu168 BSGatlas UTR 129285 129339 . + . ID=BSGatlas-5'UTR-75;Parent=BSGatlas-transcript-153;comment="5'UTR" basu168 BSGatlas TSS 129285 129285 . + . ID=BSGatlas-TSS-103;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 129306 129306 . - . ID=BSGatlas-TSS-104;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 129340 129588 . + . ID=BSGatlas-gene-153;color=#1E90FF;Name=rulS;locus_tag=BSU01090,BSU_01090;Parent=BSGatlas-operon-46 basu168 BSGatlas CDS 129340 129588 . + 0 ID=BSGatlas-gene-153_transcribed;color=#1E90FF;Name=rulS;Parent=BSGatlas-transcript-153;comment="K-turn RNA binding protein; alternativeribosomal protein L7A";synonyms="ktuS,rplGB,rpmXB,ybaB,ybxF";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005737 cytoplasm,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-153 basu168 BSGatlas UTR 129589 129701 . + . ID=BSGatlas-internal_UTR-57;Parent=BSGatlas-transcript-153;comment="internal_UTR" basu168 BSGatlas gene 129702 130118 . + . ID=BSGatlas-gene-154;color=#1E90FF;Name=rpsL;locus_tag=BSU01100,BSU_01100;Parent=BSGatlas-operon-46 basu168 BSGatlas CDS 129702 130118 . + 0 ID=BSGatlas-gene-154_transcribed;color=#1E90FF;Name=rpsL;Parent=BSGatlas-transcript-153;comment="ribosomal protein S12 (BS12)";synonyms="fun,rpsL,strA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-154 basu168 BSGatlas UTR 130119 130159 . + . ID=BSGatlas-internal_UTR-58;Parent=BSGatlas-transcript-153;comment="internal_UTR" basu168 BSGatlas gene 130160 130630 . + . ID=BSGatlas-gene-155;color=#1E90FF;Name=rpsG;locus_tag=BSU01110,BSU_01110;Parent=BSGatlas-operon-46 basu168 BSGatlas CDS 130160 130630 . + 0 ID=BSGatlas-gene-155_transcribed;color=#1E90FF;Name=rpsG;Parent=BSGatlas-transcript-153;comment="ribosomal protein S7 (BS7)";synonyms="rpsG";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.5 Universally conserved proteins";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-155 basu168 BSGatlas UTR 130631 130683 . + . ID=BSGatlas-internal_UTR-59;Parent=BSGatlas-transcript-153;comment="internal_UTR" basu168 BSGatlas gene 130684 132762 . + . ID=BSGatlas-gene-156;color=#1E90FF;Name=fusA;locus_tag=BSU01120,BSU_01120;Parent=BSGatlas-operon-46 basu168 BSGatlas CDS 130684 132762 . + 0 ID=BSGatlas-gene-156_transcribed;color=#1E90FF;Name=fusA;Parent=BSGatlas-transcript-153;comment="elongation factor G";synonyms="fus,fusA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.11 Translation factors,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue,SW 6.4.6 Phosphorylation on a Thr residue,SW 6.4.7 Phosphorylation on a Tyr residue";go="GO:0000166 nucleotide binding,GO:0003746 translation elongation factor activity,GO:0003924 GTPase activity,GO:0005525 GTP binding,GO:0005622 intracellular,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006414 translational elongation";derives_from=BSGatlas-gene-156 basu168 BSGatlas UTR 132763 132881 . + . ID=BSGatlas-internal_UTR-60;Parent=BSGatlas-transcript-153;comment="internal_UTR" basu168 BSGatlas gene 132882 134072 . + . ID=BSGatlas-gene-157;color=#1E90FF;Name=tufA;locus_tag=BSU01130,BSU_01130;Parent=BSGatlas-operon-46 basu168 BSGatlas CDS 132882 134072 . + 0 ID=BSGatlas-gene-157_transcribed;color=#1E90FF;Name=tufA;Parent=BSGatlas-transcript-153;comment="elongation factor Tu";synonyms="tufA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.11 Translation factors,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.4.7 Phosphorylation on a Tyr residue,SW 6.4.8 Phosphorylation on either a Ser, Thr or Tyr residue";ec="3.6.5.3";go="GO:0000166 nucleotide binding,GO:0003746 translation elongation factor activity,GO:0003924 GTPase activity,GO:0005525 GTP binding,GO:0005622 intracellular,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006414 translational elongation";derives_from=BSGatlas-gene-157 basu168 BSGatlas terminator 134045 134089 . + . ID=BSGatlas-terminator-63;Parent=BSGatlas-transcript-153;comment="Based on: Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas UTR 134073 134089 . + . ID=BSGatlas-3'UTR-40;Parent=BSGatlas-transcript-153;comment="3'UTR" basu168 BSGatlas TSS 134102 134102 . - . ID=BSGatlas-TSS-105;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 134136 135127 . + . ID=BSGatlas-operon-47;color=#FF00CC basu168 BSGatlas transcript 134136 135127 . + . ID=BSGatlas-transcript-154;color=#FF9900;Parent=BSGatlas-operon-47,BSGatlas-gene-158;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-106 basu168 BSGatlas exon 134136 135127 . + . ID=BSGatlas-transcript-154_exon;Parent=BSGatlas-transcript-154 basu168 BSGatlas UTR 134136 134170 . + . ID=BSGatlas-5'UTR-76;Parent=BSGatlas-transcript-154;comment="5'UTR" basu168 BSGatlas TSS 134136 134136 . + . ID=BSGatlas-TSS-106;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 134171 135127 . + . ID=BSGatlas-gene-158;color=#1E90FF;Name=ybaC;locus_tag=BSU01140,BSU_01140;Parent=BSGatlas-operon-47 basu168 BSGatlas CDS 134171 135127 . + 0 ID=BSGatlas-gene-158_transcribed;color=#1E90FF;Name=ybaC;Parent=BSGatlas-transcript-154;comment="putative proline iminopeptidase";synonyms="ybaC";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.4.11.5,EC-3.4.11.5";go="GO:0004177 aminopeptidase activity,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-158 basu168 BSGatlas operon 135170 150339 . + . ID=BSGatlas-operon-48;color=#FF00CC basu168 BSGatlas transcript 135170 150339 . + . ID=BSGatlas-transcript-155;color=#FF9900;Parent=BSGatlas-operon-48,BSGatlas-gene-160,BSGatlas-gene-161,BSGatlas-gene-162,BSGatlas-gene-163,BSGatlas-gene-164,BSGatlas-gene-165,BSGatlas-gene-166,BSGatlas-gene-167,BSGatlas-gene-168,BSGatlas-gene-169,BSGatlas-gene-170,BSGatlas-gene-171,BSGatlas-gene-172,BSGatlas-gene-173,BSGatlas-gene-174,BSGatlas-gene-175,BSGatlas-gene-176,BSGatlas-gene-177,BSGatlas-gene-178,BSGatlas-gene-179,BSGatlas-gene-180,BSGatlas-gene-181,BSGatlas-gene-182,BSGatlas-gene-183,BSGatlas-gene-184,BSGatlas-gene-185,BSGatlas-gene-186,BSGatlas-gene-187,BSGatlas-gene-188,BSGatlas-gene-189,BSGatlas-gene-190;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-107 basu168 BSGatlas exon 135170 150339 . + . ID=BSGatlas-transcript-155_exon;Parent=BSGatlas-transcript-155 basu168 BSGatlas UTR 135170 135363 . + . ID=BSGatlas-5'UTR-77;Parent=BSGatlas-transcript-155;comment="5'UTR" basu168 BSGatlas TSS 135170 135170 . + . ID=BSGatlas-TSS-107;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 135238 135321 . + . ID=BSGatlas-gene-159;color=#999999;Name=S10 leader basu168 BSGatlas riboswitch 135238 135321 . + . ID=BSGatlas-gene-159_transcribed;color=#999999;Name=S10 leader;derives_from=BSGatlas-gene-159 basu168 BSGatlas gene 135364 135672 . + . ID=BSGatlas-gene-160;color=#1E90FF;Name=rpsJ;locus_tag=BSU01150,BSU_01150;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 135364 135672 . + 0 ID=BSGatlas-gene-160_transcribed;color=#1E90FF;Name=rpsJ;Parent=BSGatlas-transcript-155;comment="ribosomal protein S10 (BS13); transcriptionantitermination factor";synonyms="rpsJ,tetA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue,SW 6.5 Universally conserved proteins";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-160 basu168 BSGatlas UTR 135673 135711 . + . ID=BSGatlas-internal_UTR-61;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 135712 136341 . + . ID=BSGatlas-gene-161;color=#1E90FF;Name=rplC;locus_tag=BSU01160,BSU_01160;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 135712 136341 . + 0 ID=BSGatlas-gene-161_transcribed;color=#1E90FF;Name=rplC;Parent=BSGatlas-transcript-155;comment="ribosomal protein L3 (BL3)";synonyms="rplC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006364 rRNA processing,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA,GO:2000234 positive regulation of rRNA processing";derives_from=BSGatlas-gene-161 basu168 BSGatlas UTR 136342 136368 . + . ID=BSGatlas-internal_UTR-62;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 136369 136992 . + . ID=BSGatlas-gene-162;color=#1E90FF;Name=rplD;locus_tag=BSU01170,BSU_01170;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 136369 136992 . + 0 ID=BSGatlas-gene-162_transcribed;color=#1E90FF;Name=rplD;Parent=BSGatlas-transcript-155;comment="ribosomal protein L4";synonyms="rplD";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-162 basu168 BSGatlas gene 136992 137279 . + . ID=BSGatlas-gene-163;color=#1E90FF;Name=rplW;locus_tag=BSU01180,BSU_01180;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 136992 137279 . + 0 ID=BSGatlas-gene-163_transcribed;color=#1E90FF;Name=rplW;Parent=BSGatlas-transcript-155;comment="ribosomal protein L23";synonyms="rplW";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0000166 nucleotide binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-163 basu168 BSGatlas UTR 137280 137310 . + . ID=BSGatlas-internal_UTR-63;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 137311 138144 . + . ID=BSGatlas-gene-164;color=#1E90FF;Name=rplB;locus_tag=BSU01190,BSU_01190;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 137311 138144 . + 0 ID=BSGatlas-gene-164_transcribed;color=#1E90FF;Name=rplB;Parent=BSGatlas-transcript-155;comment="ribosomal protein L2 (BL2)";synonyms="rplB";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005622 intracellular,GO:0005840 ribosome,GO:0006412 translation,GO:0015934 large ribosomal subunit,GO:0016740 transferase activity,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-164 basu168 BSGatlas terminator 137425 137469 . - . ID=BSGatlas-terminator-64;comment="Based on: Nicolas et al. downshift, Energy: -12.8[kcal/mol]" basu168 BSGatlas UTR 138145 138201 . + . ID=BSGatlas-internal_UTR-64;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 138202 138480 . + . ID=BSGatlas-gene-165;color=#1E90FF;Name=rpsS;locus_tag=BSU01200,BSU_01200;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 138202 138480 . + 0 ID=BSGatlas-gene-165_transcribed;color=#1E90FF;Name=rpsS;Parent=BSGatlas-transcript-155;comment="ribosomal protein S19 (BS19)";synonyms="rpsS";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-165 basu168 BSGatlas UTR 138481 138496 . + . ID=BSGatlas-internal_UTR-65;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 138497 138838 . + . ID=BSGatlas-gene-166;color=#1E90FF;Name=rplV;locus_tag=BSU01210,BSU_01210;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 138497 138838 . + 0 ID=BSGatlas-gene-166_transcribed;color=#1E90FF;Name=rplV;Parent=BSGatlas-transcript-155;comment="ribosomal protein L22 (BL17)";synonyms="rplV";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015934 large ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-166 basu168 BSGatlas terminator 138833 138877 . - . ID=BSGatlas-terminator-65;comment="Based on: Nicolas et al. downshift, Energy: -12.8[kcal/mol]" basu168 BSGatlas gene 138842 139498 . + . ID=BSGatlas-gene-167;color=#1E90FF;Name=rpsC;locus_tag=BSU01220,BSU_01220;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 138842 139498 . + 0 ID=BSGatlas-gene-167_transcribed;color=#1E90FF;Name=rpsC;Parent=BSGatlas-transcript-155;comment="ribosomal protein S3 (BS3)";synonyms="rpsC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003729 mRNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-167 basu168 BSGatlas TSS 138943 138943 . - . ID=BSGatlas-TSS-108;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 139500 139934 . + . ID=BSGatlas-gene-168;color=#1E90FF;Name=rplP;locus_tag=BSU01230,BSU_01230;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 139500 139934 . + 0 ID=BSGatlas-gene-168_transcribed;color=#1E90FF;Name=rplP;Parent=BSGatlas-transcript-155;comment="ribosomal protein L16";synonyms="rplP";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-168 basu168 BSGatlas gene 139924 140124 . + . ID=BSGatlas-gene-169;color=#1E90FF;Name=rpmC;locus_tag=BSU01240,BSU_01240;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 139924 140124 . + 0 ID=BSGatlas-gene-169_transcribed;color=#1E90FF;Name=rpmC;Parent=BSGatlas-transcript-155;comment="ribosomal protein L29";synonyms="rpmC";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-169 basu168 BSGatlas UTR 140125 140146 . + . ID=BSGatlas-internal_UTR-66;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 140147 140410 . + . ID=BSGatlas-gene-170;color=#1E90FF;Name=rpsQ;locus_tag=BSU01250,BSU_01250;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 140147 140410 . + 0 ID=BSGatlas-gene-170_transcribed;color=#1E90FF;Name=rpsQ;Parent=BSGatlas-transcript-155;comment="ribosomal protein S17 (BS16)";synonyms="rpsQ";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-170 basu168 BSGatlas UTR 140411 140450 . + . ID=BSGatlas-internal_UTR-67;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 140451 140819 . + . ID=BSGatlas-gene-171;color=#1E90FF;Name=rplNA;locus_tag=BSU01260,BSU_01260;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 140451 140819 . + 0 ID=BSGatlas-gene-171_transcribed;color=#1E90FF;Name=rplNA;Parent=BSGatlas-transcript-155;comment="ribosomal protein L14";synonyms="rplN";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015934 large ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-171 basu168 BSGatlas UTR 140820 140856 . + . ID=BSGatlas-internal_UTR-68;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 140857 141168 . + . ID=BSGatlas-gene-172;color=#1E90FF;Name=rplX;locus_tag=BSU01270,BSU_01270;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 140857 141168 . + 0 ID=BSGatlas-gene-172_transcribed;color=#1E90FF;Name=rplX;Parent=BSGatlas-transcript-155;comment="ribosomal protein L24 (BL23)";synonyms="rplX";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";derives_from=BSGatlas-gene-172 basu168 BSGatlas UTR 141169 141194 . + . ID=BSGatlas-internal_UTR-69;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 141195 141734 . + . ID=BSGatlas-gene-173;color=#1E90FF;Name=rplE;locus_tag=BSU01280,BSU_01280;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 141195 141734 . + 0 ID=BSGatlas-gene-173_transcribed;color=#1E90FF;Name=rplE;Parent=BSGatlas-transcript-155;comment="ribosomal protein L5 (BL6)";synonyms="rplE";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0000049 tRNA binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005622 intracellular,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-173 basu168 BSGatlas UTR 141735 141756 . + . ID=BSGatlas-internal_UTR-70;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 141757 141942 . + . ID=BSGatlas-gene-174;color=#1E90FF;Name=rpsNA;locus_tag=BSU01290,BSU_01290;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 141757 141942 . + 0 ID=BSGatlas-gene-174_transcribed;color=#1E90FF;Name=rpsNA;Parent=BSGatlas-transcript-155;comment="ribosomal protein S14";synonyms="rpsN";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0008270 zinc ion binding,GO:0019843 rRNA binding,GO:0030529 NA,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-174 basu168 BSGatlas UTR 141943 141973 . + . ID=BSGatlas-internal_UTR-71;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 141974 142372 . + . ID=BSGatlas-gene-175;color=#1E90FF;Name=rpsH;locus_tag=BSU01300,BSU_01300;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 141974 142372 . + 0 ID=BSGatlas-gene-175_transcribed;color=#1E90FF;Name=rpsH;Parent=BSGatlas-transcript-155;comment="ribosomal protein S8 (BS8)";synonyms="rpsH";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-175 basu168 BSGatlas terminator 142353 142397 . - . ID=BSGatlas-terminator-66;comment="Based on: Nicolas et al. downshift, Energy: -15.9[kcal/mol]" basu168 BSGatlas UTR 142373 142401 . + . ID=BSGatlas-internal_UTR-72;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 142402 142941 . + . ID=BSGatlas-gene-176;color=#1E90FF;Name=rplF;locus_tag=BSU01310,BSU_01310;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 142402 142941 . + 0 ID=BSGatlas-gene-176_transcribed;color=#1E90FF;Name=rplF;Parent=BSGatlas-transcript-155;comment="ribosomal protein L6 (BL8)";synonyms="rplF";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005515 protein binding,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-176 basu168 BSGatlas UTR 142942 142973 . + . ID=BSGatlas-internal_UTR-73;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 142974 143336 . + . ID=BSGatlas-gene-177;color=#1E90FF;Name=rplR;locus_tag=BSU01320,BSU_01320;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 142974 143336 . + 0 ID=BSGatlas-gene-177_transcribed;color=#1E90FF;Name=rplR;Parent=BSGatlas-transcript-155;comment="ribosomal protein L18";synonyms="rplR";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006364 rRNA processing,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-177 basu168 BSGatlas UTR 143337 143360 . + . ID=BSGatlas-internal_UTR-74;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 143361 143861 . + . ID=BSGatlas-gene-178;color=#1E90FF;Name=rpsE;locus_tag=BSU01330,BSU_01330;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 143361 143861 . + 0 ID=BSGatlas-gene-178_transcribed;color=#1E90FF;Name=rpsE;Parent=BSGatlas-transcript-155;comment="ribosomal protein S5";synonyms="rpsE";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.5 Universally conserved proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-178 basu168 BSGatlas gene 143875 144054 . + . ID=BSGatlas-gene-179;color=#1E90FF;Name=rpmD;locus_tag=BSU01340,BSU_01340;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 143875 144054 . + 0 ID=BSGatlas-gene-179_transcribed;color=#1E90FF;Name=rpmD;Parent=BSGatlas-transcript-155;comment="ribosomal protein L30 (BL27)";synonyms="rpmD";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015934 large ribosomal subunit,GO:0030529 NA";derives_from=BSGatlas-gene-179 basu168 BSGatlas UTR 144055 144084 . + . ID=BSGatlas-internal_UTR-75;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas transcript 144085 147273 . + . ID=BSGatlas-transcript-156;color=#FF9900;Parent=BSGatlas-operon-48,BSGatlas-gene-180,BSGatlas-gene-181,BSGatlas-gene-182,BSGatlas-gene-183;comment="Based on: SubtiWiki" basu168 BSGatlas exon 144085 147273 . + . ID=BSGatlas-transcript-156_exon;Parent=BSGatlas-transcript-156 basu168 BSGatlas gene 144085 144525 . + . ID=BSGatlas-gene-180;color=#1E90FF;Name=rplO;locus_tag=BSU01350,BSU_01350;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 144085 144525 . + 0 ID=BSGatlas-gene-180_transcribed;color=#1E90FF;Name=rplO;Parent=BSGatlas-transcript-155,BSGatlas-transcript-156;comment="ribosomal protein L15";synonyms="rplO";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0015934 large ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-180 basu168 BSGatlas gene 144527 145822 . + . ID=BSGatlas-gene-181;color=#1E90FF;Name=secY;locus_tag=BSU01360,BSU_01360;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 144527 145822 . + 0 ID=BSGatlas-gene-181_transcribed;color=#1E90FF;Name=secY;Parent=BSGatlas-transcript-155,BSGatlas-transcript-156;comment="preprotein translocase subunit";synonyms="secY";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.2 Membrane proteins,SW 6.5 Universally conserved proteins";go="GO:0005622 intracellular,GO:0005886 plasma membrane,GO:0006605 protein targeting,GO:0006810 transport,GO:0015031 protein transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0043952 protein transport by the Sec complex,GO:0065002 intracellular protein transmembrane transport";derives_from=BSGatlas-gene-181 basu168 BSGatlas UTR 145823 145876 . + . ID=BSGatlas-internal_UTR-76;Parent=BSGatlas-transcript-155,BSGatlas-transcript-156;comment="internal_UTR" basu168 BSGatlas gene 145877 146530 . + . ID=BSGatlas-gene-182;color=#1E90FF;Name=adk;locus_tag=BSU01370,BSU_01370;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 145877 146530 . + 0 ID=BSGatlas-gene-182_transcribed;color=#1E90FF;Name=adk;Parent=BSGatlas-transcript-155,BSGatlas-transcript-156;comment="adenylate kinase";synonyms="adk";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.4.3,EC-2.7.4.3";go="GO:0000166 nucleotide binding,GO:0004017 adenylate kinase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006139 nucleobase-containing compound metabolic process,GO:0009165 nucleotide biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016776 phosphotransferase activity, phosphate group as acceptor,GO:0019205 nucleobase-containing compound kinase activity,GO:0044209 AMP salvage,GO:0046872 metal ion binding,GO:0046939 nucleotide phosphorylation";derives_from=BSGatlas-gene-182 basu168 BSGatlas gene 146527 147273 . + . ID=BSGatlas-gene-183;color=#1E90FF;Name=mapA;locus_tag=BSU01380,BSU_01380;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 146527 147273 . + 0 ID=BSGatlas-gene-183_transcribed;color=#1E90FF;Name=mapA;Parent=BSGatlas-transcript-155,BSGatlas-transcript-156;comment="methionine aminopeptidase";synonyms="map,mapA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.12 Translation/ other,SW 3.3.4 Protein modification,SW 3.3.4.1 Protein maturation";ec="3.4.11.18,EC-3.4.11.18";go="GO:0004177 aminopeptidase activity,GO:0005737 cytoplasm,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008235 metalloexopeptidase activity,GO:0016787 hydrolase activity,GO:0046872 metal ion binding,GO:0070006 metalloaminopeptidase activity,GO:0070084 protein initiator methionine removal";derives_from=BSGatlas-gene-183 basu168 BSGatlas UTR 147274 147311 . + . ID=BSGatlas-internal_UTR-77;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 147312 147536 . + . ID=BSGatlas-gene-184;color=#1E90FF;Name=ybzG;locus_tag=BSU01389,BSU_01389;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 147312 147536 . + 0 ID=BSGatlas-gene-184_transcribed;color=#1E90FF;Name=ybzG;Parent=BSGatlas-transcript-155;comment="putative ribosome binding protein";synonyms="ybzG";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-184 basu168 BSGatlas UTR 147537 147584 . + . ID=BSGatlas-internal_UTR-78;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 147585 147803 . + . ID=BSGatlas-gene-185;color=#1E90FF;Name=infA;locus_tag=BSU01390,BSU_01390;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 147585 147803 . + 0 ID=BSGatlas-gene-185_transcribed;color=#1E90FF;Name=infA;Parent=BSGatlas-transcript-155;comment="initiation factor IF-I";synonyms="infA";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.11 Translation factors,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.7 Phosphorylation on a Tyr residue";go="GO:0003743 translation initiation factor activity,GO:0005737 cytoplasm,GO:0006412 translation,GO:0006413 translational initiation";derives_from=BSGatlas-gene-185 basu168 BSGatlas UTR 147804 147836 . + . ID=BSGatlas-internal_UTR-79;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 147837 147950 . + . ID=BSGatlas-gene-186;color=#1E90FF;Name=rpmJ;locus_tag=BSU01400,BSU_01400;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 147837 147950 . + 0 ID=BSGatlas-gene-186_transcribed;color=#1E90FF;Name=rpmJ;Parent=BSGatlas-transcript-155;comment="ribosomal protein L36 (ribosomal protein B)";synonyms="rpmJ,rpmX";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-186 basu168 BSGatlas UTR 147951 147972 . + . ID=BSGatlas-internal_UTR-80;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 147973 148338 . + . ID=BSGatlas-gene-187;color=#1E90FF;Name=rpsM;locus_tag=BSU01410,BSU_01410;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 147973 148338 . + 0 ID=BSGatlas-gene-187_transcribed;color=#1E90FF;Name=rpsM;Parent=BSGatlas-transcript-155;comment="ribosomal protein S13";synonyms="rpsM";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.5 Universally conserved proteins";go="GO:0000049 tRNA binding,GO:0003676 nucleic acid binding,GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005622 intracellular,GO:0005829 cytosol,GO:0005840 ribosome,GO:0006412 translation,GO:0015935 small ribosomal subunit,GO:0019843 rRNA binding,GO:0030529 NA,GO:0042254 ribosome biogenesis";derives_from=BSGatlas-gene-187 basu168 BSGatlas UTR 148339 148358 . + . ID=BSGatlas-internal_UTR-81;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 148359 148754 . + . ID=BSGatlas-gene-188;color=#1E90FF;Name=rpsK;locus_tag=BSU01420,BSU_01420;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 148359 148754 . + 0 ID=BSGatlas-gene-188_transcribed;color=#1E90FF;Name=rpsK;Parent=BSGatlas-transcript-155;comment="ribosomal protein S11 (BS11)";synonyms="rpsK";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003723 RNA binding,GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0019843 rRNA binding,GO:0030529 NA";derives_from=BSGatlas-gene-188 basu168 BSGatlas UTR 148755 148930 . + . ID=BSGatlas-internal_UTR-82;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 148931 149875 . + . ID=BSGatlas-gene-189;color=#1E90FF;Name=rpoA;locus_tag=BSU01430,BSU_01430;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 148931 149875 . + 0 ID=BSGatlas-gene-189_transcribed;color=#1E90FF;Name=rpoA;Parent=BSGatlas-transcript-155;comment="RNA polymerase (alpha subunit)";synonyms="rpoA";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.1 RNA polymerase,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.7.6";go="GO:0003677 DNA binding,GO:0003899 DNA-directed 5'-3' RNA polymerase activity,GO:0005515 protein binding,GO:0006351 transcription, DNA-templated,GO:0016740 transferase activity,GO:0016779 nucleotidyltransferase activity,GO:0046983 protein dimerization activity";derives_from=BSGatlas-gene-189 basu168 BSGatlas UTR 149876 149952 . + . ID=BSGatlas-internal_UTR-83;Parent=BSGatlas-transcript-155;comment="internal_UTR" basu168 BSGatlas gene 149953 150315 . + . ID=BSGatlas-gene-190;color=#1E90FF;Name=rplQ;locus_tag=BSU01440,BSU_01440;Parent=BSGatlas-operon-48 basu168 BSGatlas CDS 149953 150315 . + 0 ID=BSGatlas-gene-190_transcribed;color=#1E90FF;Name=rplQ;Parent=BSGatlas-transcript-155;comment="ribosomal protein L17 (BL15)";synonyms="rplQ";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-190 basu168 BSGatlas terminator 150295 150339 . + . ID=BSGatlas-terminator-67;Parent=BSGatlas-transcript-155;comment="Based on: Nicolas et al. downshift, Energy: -10.5[kcal/mol]" basu168 BSGatlas UTR 150316 150339 . + . ID=BSGatlas-3'UTR-41;Parent=BSGatlas-transcript-155;comment="3'UTR" basu168 BSGatlas gene 150443 151288 . + . ID=BSGatlas-gene-191;color=#1E90FF;Name=ecfA;locus_tag=BSU01450,BSU_01450 basu168 BSGatlas CDS 150443 151288 . + 0 ID=BSGatlas-gene-191_transcribed;color=#1E90FF;Name=ecfA;comment="energizing coupling factor of ABC influxtransporter (ATP-binding protein)";synonyms="ecfA1,ybaD,ybxA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.3 ECF transporter,SW 1.2.3.1 The general components of the ECF transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.3.-";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-191 basu168 BSGatlas gene 151303 152133 . + . ID=BSGatlas-gene-192;color=#1E90FF;Name=ecfAB;locus_tag=BSU01460,BSU_01460 basu168 BSGatlas CDS 151303 152133 . + 0 ID=BSGatlas-gene-192_transcribed;color=#1E90FF;Name=ecfAB;comment="energizing coupling factor of ABC influxtransporter (ATP-binding protein)";synonyms="ecfA2,ybaE";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.3 ECF transporter,SW 1.2.3.1 The general components of the ECF transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.3.-";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-192 basu168 BSGatlas gene 152130 152927 . + . ID=BSGatlas-gene-193;color=#1E90FF;Name=ecfT;locus_tag=BSU01470,BSU_01470 basu168 BSGatlas CDS 152130 152927 . + 0 ID=BSGatlas-gene-193_transcribed;color=#1E90FF;Name=ecfT;comment="component of the influx ECF transporters";synonyms="ecfT,ybaF";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.3 ECF transporter,SW 1.2.3.1 The general components of the ECF transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-193 basu168 BSGatlas operon 152937 154692 . + . ID=BSGatlas-operon-49;color=#FF00CC basu168 BSGatlas transcript 152937 154692 . + . ID=BSGatlas-transcript-157;color=#FF9900;Parent=BSGatlas-operon-49,BSGatlas-gene-194,BSGatlas-gene-196,BSGatlas-gene-197,BSGatlas-gene-198;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-109 basu168 BSGatlas exon 152937 154692 . + . ID=BSGatlas-transcript-157_exon;Parent=BSGatlas-transcript-157 basu168 BSGatlas gene 152937 153680 . + . ID=BSGatlas-gene-194;color=#1E90FF;Name=truA;locus_tag=BSU01480,BSU_01480;Parent=BSGatlas-operon-49 basu168 BSGatlas CDS 152937 153680 . + 0 ID=BSGatlas-gene-194_transcribed;color=#1E90FF;Name=truA;Parent=BSGatlas-transcript-157;comment="tRNA pseudouridine (38-40) synthase";synonyms="truA,ybaH";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.8 tRNA modification and maturation,SW 6 Groups of genes,SW 6.5 Universally conserved proteins";ec="5.4.99.12,EC-4.2.1.70;EC-5.4.99.12";go="GO:0001522 pseudouridine synthesis,GO:0003723 RNA binding,GO:0008033 tRNA processing,GO:0009982 pseudouridine synthase activity,GO:0016853 isomerase activity,GO:0031119 tRNA pseudouridine synthesis";derives_from=BSGatlas-gene-194 basu168 BSGatlas operon 153039 153529 . - . ID=BSGatlas-operon-50;color=#B32496 basu168 BSGatlas transcript 153039 153529 . - . ID=BSGatlas-transcript-158;color=#B37924;Parent=BSGatlas-operon-50,BSGatlas-gene-195;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-110 basu168 BSGatlas exon 153039 153529 . - . ID=BSGatlas-transcript-158_exon;Parent=BSGatlas-transcript-158 basu168 BSGatlas gene 153039 153507 . - . ID=BSGatlas-gene-195;color=#8F1D1D;Name=S58;locus_tag=new_153039_153507_c;Parent=BSGatlas-operon-50 basu168 BSGatlas ncRNA 153039 153507 . - . ID=BSGatlas-gene-195_transcribed;color=#8F1D1D;Name=S58;Parent=BSGatlas-transcript-158;synonyms="S58";derives_from=BSGatlas-gene-195 basu168 BSGatlas TSS 153211 153211 . + . ID=BSGatlas-TSS-109;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 153508 153529 . - . ID=BSGatlas-5'UTR-78;Parent=BSGatlas-transcript-158;comment="5'UTR" basu168 BSGatlas TSS 153529 153529 . - . ID=BSGatlas-TSS-110;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 153681 153735 . + . ID=BSGatlas-internal_UTR-84;Parent=BSGatlas-transcript-157;comment="internal_UTR" basu168 BSGatlas transcript 153725 154692 . + . ID=BSGatlas-transcript-159;color=#FF9900;Parent=BSGatlas-operon-49,BSGatlas-gene-197,BSGatlas-gene-198;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-111 basu168 BSGatlas exon 153725 154692 . + . ID=BSGatlas-transcript-159_exon;Parent=BSGatlas-transcript-159 basu168 BSGatlas UTR 153725 153841 . + . ID=BSGatlas-5'UTR-79;Parent=BSGatlas-transcript-159;comment="5'UTR" basu168 BSGatlas TSS 153725 153725 . + . ID=BSGatlas-TSS-111;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 153736 153793 . + . ID=BSGatlas-gene-196;color=#999999;Name=L13-leader_ldlM;locus_tag=BSU_misc_RNA_4,BSU_MISC_RNA_4;Parent=BSGatlas-operon-49 basu168 BSGatlas riboswitch 153736 153793 . + . ID=BSGatlas-gene-196_transcribed;color=#999999;Name=L13-leader_ldlM;Parent=BSGatlas-transcript-157;comment="putative L13_leader";derives_from=BSGatlas-gene-196 basu168 BSGatlas UTR 153794 153841 . + . ID=BSGatlas-internal_UTR-85;Parent=BSGatlas-transcript-157;comment="internal_UTR" basu168 BSGatlas gene 153842 154279 . + . ID=BSGatlas-gene-197;color=#1E90FF;Name=rplM;locus_tag=BSU01490,BSU_01490;Parent=BSGatlas-operon-49 basu168 BSGatlas CDS 153842 154279 . + 0 ID=BSGatlas-gene-197_transcribed;color=#1E90FF;Name=rplM;Parent=BSGatlas-transcript-157,BSGatlas-transcript-159;comment="ribosomal protein L13";synonyms="rplM";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-197 basu168 BSGatlas UTR 154280 154299 . + . ID=BSGatlas-internal_UTR-86;Parent=BSGatlas-transcript-157,BSGatlas-transcript-159;comment="internal_UTR" basu168 BSGatlas gene 154300 154692 . + . ID=BSGatlas-gene-198;color=#1E90FF;Name=rpsI;locus_tag=BSU01500,BSU_01500;Parent=BSGatlas-operon-49 basu168 BSGatlas CDS 154300 154692 . + 0 ID=BSGatlas-gene-198_transcribed;color=#1E90FF;Name=rpsI;Parent=BSGatlas-transcript-157,BSGatlas-transcript-159;comment="ribosomal protein S9";synonyms="rpsI";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.4 Ribosomal proteins,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0003735 structural constituent of ribosome,GO:0005840 ribosome,GO:0006412 translation,GO:0030529 NA";derives_from=BSGatlas-gene-198 basu168 BSGatlas terminator 154645 154689 . + . ID=BSGatlas-terminator-68;Parent=BSGatlas-transcript-157,BSGatlas-transcript-159;comment="Based on: Nicolas et al. downshift, Energy: -13.3[kcal/mol]" basu168 BSGatlas operon 154838 155923 . + . ID=BSGatlas-operon-51;color=#FF00CC basu168 BSGatlas transcript 154838 155923 . + . ID=BSGatlas-transcript-160;color=#FF9900;Parent=BSGatlas-operon-51,BSGatlas-gene-199;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-112 basu168 BSGatlas exon 154838 155923 . + . ID=BSGatlas-transcript-160_exon;Parent=BSGatlas-transcript-160 basu168 BSGatlas UTR 154838 155155 . + . ID=BSGatlas-5'UTR-80;Parent=BSGatlas-transcript-160;comment="5'UTR" basu168 BSGatlas TSS 154838 154838 . + . ID=BSGatlas-TSS-112;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 155121 155923 . + . ID=BSGatlas-transcript-161;color=#FF9900;Parent=BSGatlas-operon-51,BSGatlas-gene-199;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-113 basu168 BSGatlas exon 155121 155923 . + . ID=BSGatlas-transcript-161_exon;Parent=BSGatlas-transcript-161 basu168 BSGatlas UTR 155121 155155 . + . ID=BSGatlas-5'UTR-81;Parent=BSGatlas-transcript-161;comment="5'UTR" basu168 BSGatlas TSS 155121 155121 . + . ID=BSGatlas-TSS-113;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 155156 155923 . + . ID=BSGatlas-gene-199;color=#1E90FF;Name=ybaJ;locus_tag=BSU01510,BSU_01510;Parent=BSGatlas-operon-51 basu168 BSGatlas CDS 155156 155923 . + 0 ID=BSGatlas-gene-199_transcribed;color=#1E90FF;Name=ybaJ;Parent=BSGatlas-transcript-160,BSGatlas-transcript-161;comment="putative methyltransferase";synonyms="ybaJ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008152 metabolic process,GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-199 basu168 BSGatlas terminator 155892 155936 . + . ID=BSGatlas-terminator-69;Parent=BSGatlas-transcript-160,BSGatlas-transcript-161;comment="Based on: Nicolas et al. downshift, Energy: -10.3[kcal/mol]" basu168 BSGatlas operon 156089 157347 . + . ID=BSGatlas-operon-52;color=#FF00CC basu168 BSGatlas transcript 156089 157347 . + . ID=BSGatlas-transcript-162;color=#FF9900;Parent=BSGatlas-operon-52,BSGatlas-gene-200,BSGatlas-gene-201;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-114 basu168 BSGatlas exon 156089 157347 . + . ID=BSGatlas-transcript-162_exon;Parent=BSGatlas-transcript-162 basu168 BSGatlas UTR 156089 156108 . + . ID=BSGatlas-5'UTR-82;Parent=BSGatlas-transcript-162;comment="5'UTR" basu168 BSGatlas TSS 156089 156089 . + . ID=BSGatlas-TSS-114;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7559346" basu168 BSGatlas gene 156109 156552 . + . ID=BSGatlas-gene-200;color=#1E90FF;Name=ybaK;locus_tag=BSU01520,BSU_01520;Parent=BSGatlas-operon-52 basu168 BSGatlas CDS 156109 156552 . + 0 ID=BSGatlas-gene-200_transcribed;color=#1E90FF;Name=ybaK;Parent=BSGatlas-transcript-162;comment="conserved protein of unknown function";synonyms="ybaK,ybxH";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-200 basu168 BSGatlas UTR 156553 156611 . + . ID=BSGatlas-internal_UTR-87;Parent=BSGatlas-transcript-162;comment="internal_UTR" basu168 BSGatlas transcript 156588 157347 . + . ID=BSGatlas-transcript-163;color=#FF9900;Parent=BSGatlas-operon-52,BSGatlas-gene-201;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-115 basu168 BSGatlas exon 156588 157347 . + . ID=BSGatlas-transcript-163_exon;Parent=BSGatlas-transcript-163 basu168 BSGatlas UTR 156588 156611 . + . ID=BSGatlas-5'UTR-83;Parent=BSGatlas-transcript-163;comment="5'UTR" basu168 BSGatlas TSS 156588 156588 . + . ID=BSGatlas-TSS-115;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 7559346" basu168 BSGatlas gene 156612 157325 . + . ID=BSGatlas-gene-201;color=#1E90FF;Name=cwlD;locus_tag=BSU01530,BSU_01530;Parent=BSGatlas-operon-52 basu168 BSGatlas CDS 156612 157325 . + 0 ID=BSGatlas-gene-201_transcribed;color=#1E90FF;Name=cwlD;Parent=BSGatlas-transcript-162,BSGatlas-transcript-163;comment="N-acetylmuramoyl-L-alanine amidase";synonyms="cwlD";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.5 Cell wall/ other,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";ec="3.5.1.28,EC-3.5.1.28;EC-3.4.24.32";go="GO:0005576 extracellular region,GO:0008745 N-acetylmuramoyl-L-alanine amidase activity,GO:0009253 peptidoglycan catabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-201 basu168 BSGatlas terminator 157308 157347 . + . ID=BSGatlas-terminator-70;Parent=BSGatlas-transcript-162,BSGatlas-transcript-163;comment="Based on: BsubCyc,DBTBS, Energy: -13.3[kcal/mol]" basu168 BSGatlas UTR 157326 157347 . + . ID=BSGatlas-3'UTR-42;Parent=BSGatlas-transcript-162,BSGatlas-transcript-163;comment="3'UTR" basu168 BSGatlas operon 157370 158479 . + . ID=BSGatlas-operon-53;color=#FF00CC basu168 BSGatlas transcript 157370 158479 . + . ID=BSGatlas-transcript-164;color=#FF9900;Parent=BSGatlas-operon-53,BSGatlas-gene-202;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-116 basu168 BSGatlas exon 157370 158479 . + . ID=BSGatlas-transcript-164_exon;Parent=BSGatlas-transcript-164 basu168 BSGatlas UTR 157370 157420 . + . ID=BSGatlas-5'UTR-84;Parent=BSGatlas-transcript-164;comment="5'UTR" basu168 BSGatlas TSS 157370 157370 . + . ID=BSGatlas-TSS-116;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 157421 158479 . + . ID=BSGatlas-gene-202;color=#1E90FF;Name=salA;locus_tag=BSU01540,BSU_01540;Parent=BSGatlas-operon-53 basu168 BSGatlas CDS 157421 158479 . + 0 ID=BSGatlas-gene-202_transcribed;color=#1E90FF;Name=salA;Parent=BSGatlas-transcript-164;comment="phosphorylation-dependent (Y327) transcriptionalregulator";synonyms="salA,ybaL,ybxI";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 3.4.6 Transition state regulators";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0045892 negative regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-202 basu168 BSGatlas operon 158017 159100 . - . ID=BSGatlas-operon-54;color=#B32496 basu168 BSGatlas transcript 158017 159100 . - . ID=BSGatlas-transcript-165;color=#B37924;Parent=BSGatlas-operon-54,BSGatlas-gene-203;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-117 basu168 BSGatlas exon 158017 159100 . - . ID=BSGatlas-transcript-165_exon;Parent=BSGatlas-transcript-165 basu168 BSGatlas UTR 158017 158514 . - . ID=BSGatlas-3'UTR-43;Parent=BSGatlas-transcript-165;comment="3'UTR" basu168 BSGatlas terminator 158017 158083 . - . ID=BSGatlas-terminator-71;Parent=BSGatlas-transcript-165;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas terminator 158443 158487 . + . ID=BSGatlas-terminator-72;Parent=BSGatlas-transcript-164;comment="Based on: Nicolas et al. downshift, Energy: -9.1[kcal/mol]" basu168 BSGatlas transcript 158467 159100 . - . ID=BSGatlas-transcript-166;color=#B37924;Parent=BSGatlas-operon-54,BSGatlas-gene-203;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-117 basu168 BSGatlas exon 158467 159100 . - . ID=BSGatlas-transcript-166_exon;Parent=BSGatlas-transcript-166 basu168 BSGatlas terminator 158467 158518 . - . ID=BSGatlas-terminator-73;Parent=BSGatlas-transcript-166;comment="Based on: BsubCyc,DBTBS, Energy: -17.6[kcal/mol]" basu168 BSGatlas UTR 158467 158514 . - . ID=BSGatlas-3'UTR-44;Parent=BSGatlas-transcript-166;comment="3'UTR" basu168 BSGatlas gene 158515 159072 . - . ID=BSGatlas-gene-203;color=#3474B3;Name=gerD;locus_tag=BSU01550,BSU_01550;Parent=BSGatlas-operon-54 basu168 BSGatlas CDS 158515 159072 . - 0 ID=BSGatlas-gene-203_transcribed;color=#3474B3;Name=gerD;Parent=BSGatlas-transcript-165,BSGatlas-transcript-166;comment="lipoprotein factor mediating clustering ofgermination proteins";synonyms="gerD";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.2 Additional germination proteins,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0009847 spore germination,GO:0016020 membrane";derives_from=BSGatlas-gene-203 basu168 BSGatlas UTR 159073 159100 . - . ID=BSGatlas-5'UTR-85;Parent=BSGatlas-transcript-165,BSGatlas-transcript-166;comment="5'UTR" basu168 BSGatlas TSS 159100 159100 . - . ID=BSGatlas-TSS-117;color=#B32424;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,1906867" basu168 BSGatlas operon 159116 160581 . - . ID=BSGatlas-operon-55;color=#B32496 basu168 BSGatlas transcript 159116 160581 . - . ID=BSGatlas-transcript-167;color=#B37924;Parent=BSGatlas-operon-55,BSGatlas-gene-205;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-118 basu168 BSGatlas exon 159116 160581 . - . ID=BSGatlas-transcript-167_exon;Parent=BSGatlas-transcript-167 basu168 BSGatlas UTR 159116 159778 . - . ID=BSGatlas-3'UTR-45;Parent=BSGatlas-transcript-167;comment="3'UTR" basu168 BSGatlas terminator 159116 159182 . - . ID=BSGatlas-terminator-74;Parent=BSGatlas-transcript-167;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas operon 159182 159778 . + . ID=BSGatlas-operon-56;color=#FF00CC basu168 BSGatlas gene 159182 159778 . + . ID=BSGatlas-gene-204;color=#1E90FF;Name=kbaA;locus_tag=BSU01560,BSU_01560;Parent=BSGatlas-operon-56 basu168 BSGatlas transcript 159182 159778 . + . ID=BSGatlas-transcript-168;color=#FF9900;Parent=BSGatlas-operon-56,BSGatlas-gene-204;comment="Based on: BsubCyc" basu168 BSGatlas CDS 159182 159778 . + 0 ID=BSGatlas-gene-204_transcribed;color=#1E90FF;Name=kbaA;Parent=BSGatlas-transcript-168;comment="inner membrane protein involved in activation ofthe KinB signaling pathway to sporulation";synonyms="kbaA,ybaM,ybxC";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.7 phosphorelay,SW 3.4.7.2 Proteins controlling the activity of the kinases,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay,SW 4.2.2.2 Proteins controlling the activity of the kinases,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0045881 positive regulation of sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-204 basu168 BSGatlas exon 159182 159778 . + . ID=BSGatlas-transcript-168_exon;Parent=BSGatlas-transcript-168 basu168 BSGatlas transcript 159586 160581 . - . ID=BSGatlas-transcript-169;color=#B37924;Parent=BSGatlas-operon-55,BSGatlas-gene-205;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-118 basu168 BSGatlas exon 159586 160581 . - . ID=BSGatlas-transcript-169_exon;Parent=BSGatlas-transcript-169 basu168 BSGatlas UTR 159586 159778 . - . ID=BSGatlas-3'UTR-46;Parent=BSGatlas-transcript-169;comment="3'UTR" basu168 BSGatlas terminator 159586 159623 . - . ID=BSGatlas-terminator-75;Parent=BSGatlas-transcript-169;comment="Based on: BsubCyc,DBTBS, Energy: -5[kcal/mol]" basu168 BSGatlas gene 159779 160543 . - . ID=BSGatlas-gene-205;color=#3474B3;Name=pdaB;locus_tag=BSU01570,BSU_01570;Parent=BSGatlas-operon-55 basu168 BSGatlas CDS 159779 160543 . - 0 ID=BSGatlas-gene-205_transcribed;color=#3474B3;Name=pdaB;Parent=BSGatlas-transcript-167,BSGatlas-transcript-169;comment="polysaccharide deacetylase involved insporulation";synonyms="pdaB,ybaN,ybxG";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";go="GO:0003824 catalytic activity,GO:0005975 carbohydrate metabolic process,GO:0016787 hydrolase activity,GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0042763 intracellular immature spore";derives_from=BSGatlas-gene-205 basu168 BSGatlas UTR 160544 160581 . - . ID=BSGatlas-5'UTR-86;Parent=BSGatlas-transcript-167,BSGatlas-transcript-169;comment="5'UTR" basu168 BSGatlas TSS 160581 160581 . - . ID=BSGatlas-TSS-118;color=#B32424;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12662922,17962296" basu168 BSGatlas operon 160675 162445 . + . ID=BSGatlas-operon-57;color=#FF00CC basu168 BSGatlas transcript 160675 162445 . + . ID=BSGatlas-transcript-170;color=#FF9900;Parent=BSGatlas-operon-57,BSGatlas-gene-206;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-119 basu168 BSGatlas exon 160675 162445 . + . ID=BSGatlas-transcript-170_exon;Parent=BSGatlas-transcript-170 basu168 BSGatlas UTR 160675 160892 . + . ID=BSGatlas-5'UTR-87;Parent=BSGatlas-transcript-170;comment="5'UTR" basu168 BSGatlas TSS 160675 160675 . + . ID=BSGatlas-TSS-119;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 160893 162445 . + . ID=BSGatlas-gene-206;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnI-16S;locus_tag=BSU_rRNA_23,BSU_RRNA_23;Parent=BSGatlas-operon-57 basu168 BSGatlas rRNA 160893 162445 . + . ID=BSGatlas-gene-206_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnI-16S;Parent=BSGatlas-transcript-170;comment="ribosomal RNA-16S";synonyms="rrnI-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-206 basu168 BSGatlas gene 162607 165535 . + . ID=BSGatlas-gene-207;color=#CC33FF;Name=LSU-rRNA-archaea_rrnI-23S;locus_tag=BSU_rRNA_14,BSU_RRNA_14 basu168 BSGatlas rRNA 162607 165535 . + . ID=BSGatlas-gene-207_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnI-23S;comment="ribosomal RNA-23S";synonyms="rrnI-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-207 basu168 BSGatlas gene 165590 165707 . + . ID=BSGatlas-gene-208;color=#CC33FF;Name=5S-rRNA_rrnI-5S;locus_tag=BSU_rRNA_15,BSU_RRNA_15 basu168 BSGatlas rRNA 165590 165707 . + . ID=BSGatlas-gene-208_transcribed;color=#CC33FF;Name=5S-rRNA_rrnI-5S;comment="ribosomal RNA-5S";synonyms="rrnI-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-208 basu168 BSGatlas gene 165753 165825 . + . ID=BSGatlas-gene-209;color=#FFFF00;Name=trnI-Asn;locus_tag=BSU_tRNA_23,BSU_TRNA_23 basu168 BSGatlas tRNA 165753 165825 . + . ID=BSGatlas-gene-209_transcribed;color=#FFFF00;Name=trnI-Asn;comment="tRNA-Asn";synonyms="trnH,trnI-Asn";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-209 basu168 BSGatlas gene 165829 165902 . + . ID=BSGatlas-gene-210;color=#FFFF00;Name=trnI-Thr;locus_tag=BSU_tRNA_24,BSU_TRNA_24 basu168 BSGatlas tRNA 165829 165902 . + . ID=BSGatlas-gene-210_transcribed;color=#FFFF00;Name=trnI-Thr;comment="tRNA-Thr";synonyms="trnH,trnI-Thr";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-210 basu168 BSGatlas gene 165958 166033 . + . ID=BSGatlas-gene-211;color=#FFFF00;Name=trnI-Gly;locus_tag=BSU_tRNA_25,BSU_TRNA_25 basu168 BSGatlas tRNA 165958 166033 . + . ID=BSGatlas-gene-211_transcribed;color=#FFFF00;Name=trnI-Gly;comment="tRNA-Gly";synonyms="trnH,trnI-Gly";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-211 basu168 BSGatlas gene 166063 166140 . + . ID=BSGatlas-gene-212;color=#FFFF00;Name=trnI-Arg;locus_tag=BSU_tRNA_26,BSU_TRNA_26 basu168 BSGatlas tRNA 166063 166140 . + . ID=BSGatlas-gene-212_transcribed;color=#FFFF00;Name=trnI-Arg;comment="tRNA-Arg";synonyms="trnH,trnI-Arg";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-212 basu168 BSGatlas gene 166167 166244 . + . ID=BSGatlas-gene-213;color=#FFFF00;Name=trnI-Pro;locus_tag=BSU_tRNA_27,BSU_TRNA_27 basu168 BSGatlas tRNA 166167 166244 . + . ID=BSGatlas-gene-213_transcribed;color=#FFFF00;Name=trnI-Pro;comment="tRNA-Pro";synonyms="trnH,trnI-Pro";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-213 basu168 BSGatlas gene 166252 166328 . + . ID=BSGatlas-gene-214;color=#FFFF00;Name=trnI-Ala;locus_tag=BSU_tRNA_28,BSU_TRNA_28 basu168 BSGatlas tRNA 166252 166328 . + . ID=BSGatlas-gene-214_transcribed;color=#FFFF00;Name=trnI-Ala;comment="tRNA-Ala";synonyms="trnH,trnI-Ala";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-214 basu168 BSGatlas gene 166500 168053 . + . ID=BSGatlas-gene-215;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnH-16S;locus_tag=BSU_rRNA_16,BSU_RRNA_16 basu168 BSGatlas rRNA 166500 168053 . + . ID=BSGatlas-gene-215_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnH-16S;comment="ribosomal RNA-16S";synonyms="rrnH-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-215 basu168 BSGatlas gene 168215 171141 . + . ID=BSGatlas-gene-216;color=#CC33FF;Name=LSU-rRNA-archaea_rrnH-23S;locus_tag=BSU_rRNA_29,BSU_RRNA_29 basu168 BSGatlas rRNA 168215 171141 . + . ID=BSGatlas-gene-216_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnH-23S;comment="ribosomal RNA-23S";synonyms="rrnH-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-216 basu168 BSGatlas gene 171196 171314 . + . ID=BSGatlas-gene-217;color=#CC33FF;Name=5S-rRNA_rrnH-5S;locus_tag=BSU_rRNA_24,BSU_RRNA_24 basu168 BSGatlas rRNA 171196 171314 . + . ID=BSGatlas-gene-217_transcribed;color=#CC33FF;Name=5S-rRNA_rrnH-5S;comment="ribosomal RNA-5S";synonyms="rrnH-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-217 basu168 BSGatlas gene 171498 173049 . + . ID=BSGatlas-gene-218;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnG-16S;locus_tag=BSU_rRNA_25,BSU_RRNA_25 basu168 BSGatlas rRNA 171498 173049 . + . ID=BSGatlas-gene-218_transcribed;color=#CC33FF;Name=SSU-rRNA-bacteria_rrnG-16S;comment="ribosomal RNA-16S";synonyms="rrnG-16S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-218 basu168 BSGatlas gene 173211 176141 . + . ID=BSGatlas-gene-219;color=#CC33FF;Name=LSU-rRNA-archaea_rrnG-23S;locus_tag=BSU_rRNA_27,BSU_RRNA_27 basu168 BSGatlas rRNA 173211 176141 . + . ID=BSGatlas-gene-219_transcribed;color=#CC33FF;Name=LSU-rRNA-archaea_rrnG-23S;comment="ribosomal RNA-23S";synonyms="rrnG-23S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-219 basu168 BSGatlas gene 176196 176315 . + . ID=BSGatlas-gene-220;color=#CC33FF;Name=5S-rRNA_rrnG-5S;locus_tag=BSU_rRNA_28,BSU_RRNA_28 basu168 BSGatlas rRNA 176196 176315 . + . ID=BSGatlas-gene-220_transcribed;color=#CC33FF;Name=5S-rRNA_rrnG-5S;comment="ribosomal RNA-5S";synonyms="rrnG-5S";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.1 Ribosomal RNA";derives_from=BSGatlas-gene-220 basu168 BSGatlas operon 176926 178519 . + . ID=BSGatlas-operon-58;color=#FF00CC basu168 BSGatlas transcript 176926 178519 . + . ID=BSGatlas-transcript-171;color=#FF9900;Parent=BSGatlas-operon-58,BSGatlas-gene-221;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-120 basu168 BSGatlas exon 176926 178519 . + . ID=BSGatlas-transcript-171_exon;Parent=BSGatlas-transcript-171 basu168 BSGatlas UTR 176926 177082 . + . ID=BSGatlas-5'UTR-88;Parent=BSGatlas-transcript-171;comment="5'UTR" basu168 BSGatlas TSS 176926 176926 . + . ID=BSGatlas-TSS-120;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 177083 178519 . + . ID=BSGatlas-gene-221;color=#1E90FF;Name=ybaR;locus_tag=BSU01580,BSU_01580;Parent=BSGatlas-operon-58 basu168 BSGatlas CDS 177083 178519 . + 0 ID=BSGatlas-gene-221_transcribed;color=#1E90FF;Name=ybaR;Parent=BSGatlas-transcript-171;comment="putative permease";synonyms="ybaR";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.4 Transporter for organic acids,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.1 Utilization of organic acids,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0008271 secondary active sulfate transmembrane transporter activity,GO:0008272 sulfate transport,GO:0015116 sulfate transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport,GO:1902358 sulfate transmembrane transport";derives_from=BSGatlas-gene-221 basu168 BSGatlas terminator 178486 178530 . + . ID=BSGatlas-terminator-76;Parent=BSGatlas-transcript-171;comment="Based on: Nicolas et al. downshift, Energy: -12[kcal/mol]" basu168 BSGatlas operon 178598 179585 . + . ID=BSGatlas-operon-59;color=#FF00CC basu168 BSGatlas transcript 178598 179585 . + . ID=BSGatlas-transcript-172;color=#FF9900;Parent=BSGatlas-operon-59,BSGatlas-gene-222;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-121 basu168 BSGatlas exon 178598 179585 . + . ID=BSGatlas-transcript-172_exon;Parent=BSGatlas-transcript-172 basu168 BSGatlas UTR 178598 178664 . + . ID=BSGatlas-5'UTR-89;Parent=BSGatlas-transcript-172;comment="5'UTR" basu168 BSGatlas TSS 178598 178598 . + . ID=BSGatlas-TSS-121;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 178665 179585 . + . ID=BSGatlas-gene-222;color=#1E90FF;Name=ybaS;locus_tag=BSU01590,BSU_01590;Parent=BSGatlas-operon-59 basu168 BSGatlas CDS 178665 179585 . + 0 ID=BSGatlas-gene-222_transcribed;color=#1E90FF;Name=ybaS;Parent=BSGatlas-transcript-172;comment="putative sodium dependent transporter";synonyms="ybaS";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006869 lipid transport,GO:0008508 bile acid:sodium symporter activity,GO:0015721 bile acid and bile salt transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0035725 sodium ion transmembrane transport";derives_from=BSGatlas-gene-222 basu168 BSGatlas terminator 179544 179588 . + . ID=BSGatlas-terminator-77;Parent=BSGatlas-transcript-172;comment="Based on: Nicolas et al. downshift, Energy: -10.5[kcal/mol]" basu168 BSGatlas operon 179576 183364 . - . ID=BSGatlas-operon-60;color=#B32496 basu168 BSGatlas transcript 179576 183364 . - . ID=BSGatlas-transcript-175;color=#B37924;Parent=BSGatlas-operon-60,BSGatlas-gene-226,BSGatlas-gene-225,BSGatlas-gene-224,BSGatlas-gene-223;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-125 basu168 BSGatlas exon 179576 183364 . - . ID=BSGatlas-transcript-175_exon;Parent=BSGatlas-transcript-175 basu168 BSGatlas transcript 179576 183361 . - . ID=BSGatlas-transcript-174;color=#B37924;Parent=BSGatlas-operon-60,BSGatlas-gene-226,BSGatlas-gene-225,BSGatlas-gene-224,BSGatlas-gene-223;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-124 basu168 BSGatlas exon 179576 183361 . - . ID=BSGatlas-transcript-174_exon;Parent=BSGatlas-transcript-174 basu168 BSGatlas transcript 179576 183358 . - . ID=BSGatlas-transcript-173;color=#B37924;Parent=BSGatlas-operon-60,BSGatlas-gene-226,BSGatlas-gene-225,BSGatlas-gene-224,BSGatlas-gene-223;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-123 basu168 BSGatlas exon 179576 183358 . - . ID=BSGatlas-transcript-173_exon;Parent=BSGatlas-transcript-173 basu168 BSGatlas terminator 179576 179615 . - . ID=BSGatlas-terminator-78;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.1[kcal/mol]" basu168 BSGatlas UTR 179576 179594 . - . ID=BSGatlas-3'UTR-47;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="3'UTR" basu168 BSGatlas gene 179595 180347 . - . ID=BSGatlas-gene-223;color=#3474B3;Name=eesA;locus_tag=BSU01600,BSU_01600;Parent=BSGatlas-operon-60 basu168 BSGatlas CDS 179595 180347 . - 0 ID=BSGatlas-gene-223_transcribed;color=#3474B3;Name=eesA;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="iron-chelator (enterobactin family) esterase";synonyms="ybbA";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.3 Acquisition of iron / Other,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.1 Acquisition of iron / Other";derives_from=BSGatlas-gene-223 basu168 BSGatlas gene 180344 181354 . - . ID=BSGatlas-gene-224;color=#3474B3;Name=feuC;locus_tag=BSU01610,BSU_01610;Parent=BSGatlas-operon-60 basu168 BSGatlas CDS 180344 181354 . - 0 ID=BSGatlas-gene-224_transcribed;color=#3474B3;Name=feuC;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="iron-uptake protein";synonyms="feuC";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055072 iron ion homeostasis";derives_from=BSGatlas-gene-224 basu168 BSGatlas gene 181347 182351 . - . ID=BSGatlas-gene-225;color=#3474B3;Name=feuB;locus_tag=BSU01620,BSU_01620;Parent=BSGatlas-operon-60 basu168 BSGatlas CDS 181347 182351 . - 0 ID=BSGatlas-gene-225_transcribed;color=#3474B3;Name=feuB;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="ferri-bacillibactin permease";synonyms="feuB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055072 iron ion homeostasis";derives_from=BSGatlas-gene-225 basu168 BSGatlas UTR 182352 182369 . - . ID=BSGatlas-internal_UTR-88;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="internal_UTR" basu168 BSGatlas gene 182370 183323 . - . ID=BSGatlas-gene-226;color=#3474B3;Name=feuA;locus_tag=BSU01630,BSU_01630;Parent=BSGatlas-operon-60 basu168 BSGatlas CDS 182370 183323 . - 0 ID=BSGatlas-gene-226_transcribed;color=#3474B3;Name=feuA;Parent=BSGatlas-transcript-173,BSGatlas-transcript-174,BSGatlas-transcript-175;comment="ferri-bacillibactin-binding lipoprotein";synonyms="feuA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.12 Secreted proteins,SW 6.2 Membrane proteins";go="GO:0005737 cytoplasm,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0016020 membrane,GO:0055072 iron ion homeostasis";derives_from=BSGatlas-gene-226 basu168 BSGatlas TSS 182713 182713 . + . ID=BSGatlas-TSS-122;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 183324 183364 . - . ID=BSGatlas-5'UTR-92;Parent=BSGatlas-transcript-175;comment="5'UTR" basu168 BSGatlas UTR 183324 183361 . - . ID=BSGatlas-5'UTR-91;Parent=BSGatlas-transcript-174;comment="5'UTR" basu168 BSGatlas UTR 183324 183358 . - . ID=BSGatlas-5'UTR-90;Parent=BSGatlas-transcript-173;comment="5'UTR" basu168 BSGatlas TSS 183358 183358 . - . ID=BSGatlas-TSS-123;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 17725565,17962296" basu168 BSGatlas TSS 183361 183361 . - . ID=BSGatlas-TSS-124;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 14563870,17962296" basu168 BSGatlas TSS 183364 183364 . - . ID=BSGatlas-TSS-125;color=#B32424;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 14563870" basu168 BSGatlas operon 183414 185056 . - . ID=BSGatlas-operon-61;color=#B32496 basu168 BSGatlas transcript 183414 185056 . - . ID=BSGatlas-transcript-176;color=#B37924;Parent=BSGatlas-operon-61,BSGatlas-gene-227;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-126 basu168 BSGatlas exon 183414 185056 . - . ID=BSGatlas-transcript-176_exon;Parent=BSGatlas-transcript-176 basu168 BSGatlas gene 183414 185003 . - . ID=BSGatlas-gene-227;color=#3474B3;Name=btr;locus_tag=BSU01640,BSU_01640;Parent=BSGatlas-operon-61 basu168 BSGatlas CDS 183414 185003 . - 0 ID=BSGatlas-gene-227_transcribed;color=#3474B3;Name=btr;Parent=BSGatlas-transcript-176;comment="transcriptional activator (AraC/XylS family) ofsynthesis and uptake of the siderophore bacillibactin";synonyms="btr,ybbB,yzbC";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.3 Acquisition of iron / Other,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.1 Acquisition of iron / Other,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0000986 bacterial-type proximal promoter sequence-specific DNA binding,GO:0001140 transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding,GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding,GO:2000144 positive regulation of DNA-templated transcription, initiation";derives_from=BSGatlas-gene-227 basu168 BSGatlas UTR 185004 185056 . - . ID=BSGatlas-5'UTR-93;Parent=BSGatlas-transcript-176;comment="5'UTR" basu168 BSGatlas TSS 185056 185056 . - . ID=BSGatlas-TSS-126;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 185143 193009 . - . ID=BSGatlas-operon-62;color=#B32496 basu168 BSGatlas transcript 185143 193009 . - . ID=BSGatlas-transcript-177;color=#B37924;Parent=BSGatlas-operon-62,BSGatlas-gene-233,BSGatlas-gene-232,BSGatlas-gene-231,BSGatlas-gene-230,BSGatlas-gene-229,BSGatlas-gene-228;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-127 basu168 BSGatlas exon 185143 193009 . - . ID=BSGatlas-transcript-177_exon;Parent=BSGatlas-transcript-177 basu168 BSGatlas UTR 185143 185193 . - . ID=BSGatlas-3'UTR-48;Parent=BSGatlas-transcript-177;comment="3'UTR" basu168 BSGatlas terminator 185143 185187 . - . ID=BSGatlas-terminator-79;Parent=BSGatlas-transcript-177;comment="Based on: Nicolas et al. downshift, Energy: -10.1[kcal/mol]" basu168 BSGatlas terminator 185193 185237 . - . ID=BSGatlas-terminator-80;Parent=BSGatlas-transcript-178;comment="Based on: Nicolas et al. downshift, Energy: -10.1[kcal/mol]" basu168 BSGatlas transcript 185194 193009 . - . ID=BSGatlas-transcript-178;color=#B37924;Parent=BSGatlas-operon-62,BSGatlas-gene-233,BSGatlas-gene-232,BSGatlas-gene-231,BSGatlas-gene-230,BSGatlas-gene-229,BSGatlas-gene-228;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-127 basu168 BSGatlas exon 185194 193009 . - . ID=BSGatlas-transcript-178_exon;Parent=BSGatlas-transcript-178 basu168 BSGatlas gene 185194 186438 . - . ID=BSGatlas-gene-228;color=#3474B3;Name=ybbC;locus_tag=BSU01650,BSU_01650;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 185194 186438 . - 0 ID=BSGatlas-gene-228_transcribed;color=#3474B3;Name=ybbC;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="conserved protein of unknown function";synonyms="ybbC,yzbB";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-228 basu168 BSGatlas gene 186452 188380 . - . ID=BSGatlas-gene-229;color=#3474B3;Name=nagZ;locus_tag=BSU01660,BSU_01660;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 186452 188380 . - 0 ID=BSGatlas-gene-229_transcribed;color=#3474B3;Name=nagZ;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="N-acetylglucosaminidase lipoprotein";synonyms="nagZ,ybbD,yzbA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components";ec="3.2.1.52,EC-3.2.1.52";go="GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0005886 plasma membrane,GO:0005975 carbohydrate metabolic process,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds";derives_from=BSGatlas-gene-229 basu168 BSGatlas UTR 188381 188407 . - . ID=BSGatlas-internal_UTR-89;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="internal_UTR" basu168 BSGatlas gene 188408 189733 . - . ID=BSGatlas-gene-230;color=#3474B3;Name=amiE;locus_tag=BSU01670,BSU_01670;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 188408 189733 . - 0 ID=BSGatlas-gene-230_transcribed;color=#3474B3;Name=amiE;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="amidase hydrolyzing N-acetylmuramyl-L-Ala bondof MurNAc peptides";synonyms="amiE,ybbE";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components";derives_from=BSGatlas-gene-230 basu168 BSGatlas UTR 189734 189789 . - . ID=BSGatlas-internal_UTR-90;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="internal_UTR" basu168 BSGatlas gene 189790 191157 . - . ID=BSGatlas-gene-231;color=#3474B3;Name=murP;locus_tag=BSU01680,BSU_01680;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 189790 191157 . - 0 ID=BSGatlas-gene-231_transcribed;color=#3474B3;Name=murP;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="N-acetylmuramic acid PTS permease-MurP subunit";synonyms="murP,ybbF";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.3 Phosphorylation on a Cys residue";ec="2.7.1.192,2.7.1.69,EC-2.7.1.69";go="GO:0005351 carbohydrate:proton symporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015992 NA,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-231 basu168 BSGatlas UTR 191158 191182 . - . ID=BSGatlas-internal_UTR-91;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="internal_UTR" basu168 BSGatlas gene 191183 192034 . - . ID=BSGatlas-gene-232;color=#3474B3;Name=murR;locus_tag=BSU01690,BSU_01690;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 191183 192034 . - 0 ID=BSGatlas-gene-232_transcribed;color=#3474B3;Name=murR;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="transcriptional regulator MurR-N-acetylmuramicacid";synonyms="murR,ybbH";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005975 carbohydrate metabolic process,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0030246 carbohydrate binding";derives_from=BSGatlas-gene-232 basu168 BSGatlas UTR 192035 192050 . - . ID=BSGatlas-internal_UTR-92;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="internal_UTR" basu168 BSGatlas gene 192051 192965 . - . ID=BSGatlas-gene-233;color=#3474B3;Name=murQ;locus_tag=BSU01700,BSU_01700;Parent=BSGatlas-operon-62 basu168 BSGatlas CDS 192051 192965 . - 0 ID=BSGatlas-gene-233_transcribed;color=#3474B3;Name=murQ;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="D-lactyl ether N-acetylmuramic-6-phosphate acidetherase";synonyms="murQ,ybbI";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";ec="4.2.1.126";go="GO:0005975 carbohydrate metabolic process,GO:0006040 amino sugar metabolic process,GO:0016829 lyase activity,GO:0016835 carbon-oxygen lyase activity,GO:0030246 carbohydrate binding,GO:0046348 amino sugar catabolic process,GO:0097173 N-acetylmuramic acid catabolic process";derives_from=BSGatlas-gene-233 basu168 BSGatlas UTR 192966 193009 . - . ID=BSGatlas-5'UTR-94;Parent=BSGatlas-transcript-177,BSGatlas-transcript-178;comment="5'UTR" basu168 BSGatlas TSS 193009 193009 . - . ID=BSGatlas-TSS-127;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 193075 193557 . - . ID=BSGatlas-gene-234;color=#3474B3;Name=ybbJ;locus_tag=BSU01710,BSU_01710 basu168 BSGatlas CDS 193075 193557 . - 0 ID=BSGatlas-gene-234_transcribed;color=#3474B3;Name=ybbJ;comment="putative acyltransferase";synonyms="ybbJ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008080 N-acetyltransferase activity,GO:0008152 metabolic process,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups";derives_from=BSGatlas-gene-234 basu168 BSGatlas operon 193570 194072 . - . ID=BSGatlas-operon-63;color=#B32496 basu168 BSGatlas transcript 193570 194072 . - . ID=BSGatlas-transcript-179;color=#B37924;Parent=BSGatlas-operon-63,BSGatlas-gene-235;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-128 basu168 BSGatlas exon 193570 194072 . - . ID=BSGatlas-transcript-179_exon;Parent=BSGatlas-transcript-179 basu168 BSGatlas gene 193570 194025 . - . ID=BSGatlas-gene-235;color=#3474B3;Name=ybbK;locus_tag=BSU01720,BSU_01720;Parent=BSGatlas-operon-63 basu168 BSGatlas CDS 193570 194025 . - 0 ID=BSGatlas-gene-235_transcribed;color=#3474B3;Name=ybbK;Parent=BSGatlas-transcript-179;comment="conserved protein of unknown function";synonyms="ybbK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-235 basu168 BSGatlas UTR 194026 194072 . - . ID=BSGatlas-5'UTR-95;Parent=BSGatlas-transcript-179;comment="5'UTR" basu168 BSGatlas TSS 194072 194072 . - . ID=BSGatlas-TSS-128;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 194178 194661 . + . ID=BSGatlas-operon-64;color=#FF00CC basu168 BSGatlas transcript 194178 194661 . + . ID=BSGatlas-transcript-180;color=#FF9900;Parent=BSGatlas-operon-64,BSGatlas-gene-236,BSGatlas-gene-237,BSGatlas-gene-238,BSGatlas-gene-239,BSGatlas-gene-240;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-129 basu168 BSGatlas exon 194178 194661 . + . ID=BSGatlas-transcript-180_exon;Parent=BSGatlas-transcript-180 basu168 BSGatlas UTR 194178 194203 . + . ID=BSGatlas-5'UTR-96;Parent=BSGatlas-transcript-180;comment="5'UTR" basu168 BSGatlas TSS 194178 194178 . + . ID=BSGatlas-TSS-129;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 194204 194279 . + . ID=BSGatlas-gene-236;color=#FFFF00;Name=trnSL-Glu2;locus_tag=BSU_tRNA_75,BSU_TRNA_75;Parent=BSGatlas-operon-64 basu168 BSGatlas tRNA 194204 194279 . + . ID=BSGatlas-gene-236_transcribed;color=#FFFF00;Name=trnSL-Glu2;Parent=BSGatlas-transcript-180;comment="tRNA-Glu";synonyms="trnSL-Glu2";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-236 basu168 BSGatlas gene 194282 194358 . + . ID=BSGatlas-gene-237;color=#FFFF00;Name=trnSL-Val1;locus_tag=BSU_tRNA_78,BSU_TRNA_78;Parent=BSGatlas-operon-64 basu168 BSGatlas tRNA 194282 194358 . + . ID=BSGatlas-gene-237_transcribed;color=#FFFF00;Name=trnSL-Val1;Parent=BSGatlas-transcript-180;comment="tRNA-Val";synonyms="trnSL-Val1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-237 basu168 BSGatlas gene 194362 194435 . + . ID=BSGatlas-gene-238;color=#FFFF00;Name=trnSL-Thr1;locus_tag=BSU_tRNA_76,BSU_TRNA_76;Parent=BSGatlas-operon-64 basu168 BSGatlas tRNA 194362 194435 . + . ID=BSGatlas-gene-238_transcribed;color=#FFFF00;Name=trnSL-Thr1;Parent=BSGatlas-transcript-180;comment="tRNA-Thr";synonyms="trnSL-Thr1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-238 basu168 BSGatlas UTR 194436 194456 . + . ID=BSGatlas-internal_UTR-93;Parent=BSGatlas-transcript-180;comment="internal_UTR" basu168 BSGatlas gene 194457 194542 . + . ID=BSGatlas-gene-239;color=#FFFF00;Name=trnSL-Tyr1;locus_tag=BSU_tRNA_77,BSU_TRNA_77;Parent=BSGatlas-operon-64 basu168 BSGatlas tRNA 194457 194542 . + . ID=BSGatlas-gene-239_transcribed;color=#FFFF00;Name=trnSL-Tyr1;Parent=BSGatlas-transcript-180;comment="tRNA-Tyr";synonyms="trnSL-Tyr1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-239 basu168 BSGatlas gene 194546 194621 . + . ID=BSGatlas-gene-240;color=#FFFF00;Name=trnSL-Gln2;locus_tag=BSU_tRNA_74,BSU_TRNA_74;Parent=BSGatlas-operon-64 basu168 BSGatlas tRNA 194546 194621 . + . ID=BSGatlas-gene-240_transcribed;color=#FFFF00;Name=trnSL-Gln2;Parent=BSGatlas-transcript-180;comment="tRNA-Gln";synonyms="trnSL-Gln2";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-240 basu168 BSGatlas terminator 194619 194661 . + . ID=BSGatlas-terminator-81;Parent=BSGatlas-transcript-180;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15[kcal/mol]" basu168 BSGatlas UTR 194622 194661 . + . ID=BSGatlas-3'UTR-49;Parent=BSGatlas-transcript-180;comment="3'UTR" basu168 BSGatlas operon 194788 196088 . + . ID=BSGatlas-operon-65;color=#FF00CC basu168 BSGatlas transcript 194788 196088 . + . ID=BSGatlas-transcript-181;color=#FF9900;Parent=BSGatlas-operon-65,BSGatlas-gene-241,BSGatlas-gene-242;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-130 basu168 BSGatlas exon 194788 196088 . + . ID=BSGatlas-transcript-181_exon;Parent=BSGatlas-transcript-181 basu168 BSGatlas UTR 194788 194848 . + . ID=BSGatlas-5'UTR-97;Parent=BSGatlas-transcript-181;comment="5'UTR" basu168 BSGatlas TSS 194788 194788 . + . ID=BSGatlas-TSS-130;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 194821 196088 . + . ID=BSGatlas-transcript-182;color=#FF9900;Parent=BSGatlas-operon-65,BSGatlas-gene-241,BSGatlas-gene-242;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-131 basu168 BSGatlas exon 194821 196088 . + . ID=BSGatlas-transcript-182_exon;Parent=BSGatlas-transcript-182 basu168 BSGatlas UTR 194821 194848 . + . ID=BSGatlas-5'UTR-98;Parent=BSGatlas-transcript-182;comment="5'UTR" basu168 BSGatlas TSS 194821 194821 . + . ID=BSGatlas-TSS-131;color=#FF0000;comment="Simga: W, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 12207695,17962296,9987136" basu168 BSGatlas gene 194849 195412 . + . ID=BSGatlas-gene-241;color=#1E90FF;Name=sigW;locus_tag=BSU01730,BSU_01730;Parent=BSGatlas-operon-65 basu168 BSGatlas CDS 194849 195412 . + 0 ID=BSGatlas-gene-241_transcribed;color=#1E90FF;Name=sigW;Parent=BSGatlas-transcript-181,BSGatlas-transcript-182;comment="RNA polymerase ECF(extracytoplasmicfunction)-type sigma factor W";synonyms="sigW,ybbL";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.2 Sigma factors,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.1 Sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006352 DNA-templated transcription, initiation,GO:0006355 regulation of transcription, DNA-templated,GO:0006950 response to stress,GO:0016987 sigma factor activity";derives_from=BSGatlas-gene-241 basu168 BSGatlas gene 195426 196052 . + . ID=BSGatlas-gene-242;color=#1E90FF;Name=rsiW;locus_tag=BSU01740,BSU_01740;Parent=BSGatlas-operon-65 basu168 BSGatlas CDS 195426 196052 . + 0 ID=BSGatlas-gene-242_transcribed;color=#1E90FF;Name=rsiW;Parent=BSGatlas-transcript-181,BSGatlas-transcript-182;comment="anti-sigma(W) factor";synonyms="rsiW,ybbM";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0006950 response to stress,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-242 basu168 BSGatlas terminator 195822 195866 . - . ID=BSGatlas-terminator-82;comment="Based on: Nicolas et al. downshift, Energy: -6.9[kcal/mol]" basu168 BSGatlas terminator 196042 196088 . + . ID=BSGatlas-terminator-83;Parent=BSGatlas-transcript-181,BSGatlas-transcript-182;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.2[kcal/mol]" basu168 BSGatlas TSS 196042 196042 . - . ID=BSGatlas-TSS-132;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 196053 196088 . + . ID=BSGatlas-3'UTR-50;Parent=BSGatlas-transcript-181,BSGatlas-transcript-182;comment="3'UTR" basu168 BSGatlas operon 196132 202079 . + . ID=BSGatlas-operon-66;color=#FF00CC basu168 BSGatlas transcript 196132 202079 . + . ID=BSGatlas-transcript-184;color=#FF9900;Parent=BSGatlas-operon-66,BSGatlas-gene-243,BSGatlas-gene-244,BSGatlas-gene-245,BSGatlas-gene-246,BSGatlas-gene-247;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-133 basu168 BSGatlas exon 196132 202079 . + . ID=BSGatlas-transcript-184_exon;Parent=BSGatlas-transcript-184 basu168 BSGatlas transcript 196132 199860 . + . ID=BSGatlas-transcript-183;color=#FF9900;Parent=BSGatlas-operon-66,BSGatlas-gene-243,BSGatlas-gene-244,BSGatlas-gene-245;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-133 basu168 BSGatlas exon 196132 199860 . + . ID=BSGatlas-transcript-183_exon;Parent=BSGatlas-transcript-183 basu168 BSGatlas UTR 196132 196212 . + . ID=BSGatlas-5'UTR-99;Parent=BSGatlas-transcript-183,BSGatlas-transcript-184;comment="5'UTR" basu168 BSGatlas TSS 196132 196132 . + . ID=BSGatlas-TSS-133;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 196213 197034 . + . ID=BSGatlas-gene-243;color=#1E90FF;Name=cdaA;locus_tag=BSU01750,BSU_01750;Parent=BSGatlas-operon-66 basu168 BSGatlas CDS 196213 197034 . + 0 ID=BSGatlas-gene-243_transcribed;color=#1E90FF;Name=cdaA;Parent=BSGatlas-transcript-183,BSGatlas-transcript-184;comment="diadenylate cyclase";synonyms="cdaA,ybbP,ybbQ";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.3 Metabolism of signalling nucleotides,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="2.7.7.85,EC-2.7.7.85";go="GO:0005515 protein binding,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-243 basu168 BSGatlas gene 197027 198478 . + . ID=BSGatlas-gene-244;color=#1E90FF;Name=cdaR;locus_tag=BSU01760,BSU_01760;Parent=BSGatlas-operon-66 basu168 BSGatlas CDS 197027 198478 . + 0 ID=BSGatlas-gene-244_transcribed;color=#1E90FF;Name=cdaR;Parent=BSGatlas-transcript-183,BSGatlas-transcript-184;comment="regulator of diadenylate cyclase activity";synonyms="cdaR,ybbR";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.3 Metabolism of signalling nucleotides";go="GO:0005515 protein binding";derives_from=BSGatlas-gene-244 basu168 BSGatlas UTR 198479 198496 . + . ID=BSGatlas-internal_UTR-94;Parent=BSGatlas-transcript-183,BSGatlas-transcript-184;comment="internal_UTR" basu168 BSGatlas gene 198497 199843 . + . ID=BSGatlas-gene-245;color=#1E90FF;Name=glmM;locus_tag=BSU01770,BSU_01770;Parent=BSGatlas-operon-66 basu168 BSGatlas CDS 198497 199843 . + 0 ID=BSGatlas-gene-245_transcribed;color=#1E90FF;Name=glmM;Parent=BSGatlas-transcript-183,BSGatlas-transcript-184;comment="phosphoglucosamine mutase";synonyms="glmM,ybbT";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.1 Essential genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";ec="5.4.2.10,EC-5.4.2.10";go="GO:0000287 magnesium ion binding,GO:0005829 cytosol,GO:0005975 carbohydrate metabolic process,GO:0006048 UDP-N-acetylglucosamine biosynthetic process,GO:0008966 phosphoglucosamine mutase activity,GO:0016853 isomerase activity,GO:0016868 intramolecular transferase activity, phosphotransferases,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-245 basu168 BSGatlas terminator 199816 199860 . + . ID=BSGatlas-terminator-84;Parent=BSGatlas-transcript-183;comment="Based on: Nicolas et al. downshift, Energy: -17.5[kcal/mol]" basu168 BSGatlas UTR 199844 200015 . + . ID=BSGatlas-internal_UTR-95;Parent=BSGatlas-transcript-184;comment="internal_UTR" basu168 BSGatlas UTR 199844 199860 . + . ID=BSGatlas-3'UTR-51;Parent=BSGatlas-transcript-183;comment="3'UTR" basu168 BSGatlas transcript 199878 202079 . + . ID=BSGatlas-transcript-185;color=#FF9900;Parent=BSGatlas-operon-66,BSGatlas-gene-247;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-134 basu168 BSGatlas exon 199878 202079 . + . ID=BSGatlas-transcript-185_exon;Parent=BSGatlas-transcript-185 basu168 BSGatlas UTR 199878 200276 . + . ID=BSGatlas-5'UTR-100;Parent=BSGatlas-transcript-185;comment="5'UTR" basu168 BSGatlas TSS 199878 199878 . + . ID=BSGatlas-TSS-134;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 199957 202079 . + . ID=BSGatlas-transcript-186;color=#FF9900;Parent=BSGatlas-operon-66,BSGatlas-gene-247;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-135 basu168 BSGatlas exon 199957 202079 . + . ID=BSGatlas-transcript-186_exon;Parent=BSGatlas-transcript-186 basu168 BSGatlas UTR 199957 200276 . + . ID=BSGatlas-5'UTR-101;Parent=BSGatlas-transcript-186;comment="5'UTR" basu168 BSGatlas TSS 199957 199957 . + . ID=BSGatlas-TSS-135;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 200014 202079 . + . ID=BSGatlas-transcript-187;color=#FF9900;Parent=BSGatlas-operon-66,BSGatlas-gene-247;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-136 basu168 BSGatlas exon 200014 202079 . + . ID=BSGatlas-transcript-187_exon;Parent=BSGatlas-transcript-187 basu168 BSGatlas UTR 200014 200276 . + . ID=BSGatlas-5'UTR-102;Parent=BSGatlas-transcript-187;comment="5'UTR" basu168 BSGatlas TSS 200014 200014 . + . ID=BSGatlas-TSS-136;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 200016 200187 . + . ID=BSGatlas-gene-246;color=#999999;Name=glmS_glmSA;locus_tag=BSU_misc_RNA_5;Parent=BSGatlas-operon-66 basu168 BSGatlas riboswitch 200016 200187 . + . ID=BSGatlas-gene-246_transcribed;color=#999999;Name=glmS_glmSA;Parent=BSGatlas-transcript-184;comment="riboswitch and ribozyme (GlmS-glucosamine-6-P)";derives_from=BSGatlas-gene-246 basu168 BSGatlas UTR 200188 200276 . + . ID=BSGatlas-internal_UTR-96;Parent=BSGatlas-transcript-184;comment="internal_UTR" basu168 BSGatlas gene 200277 202079 . + . ID=BSGatlas-gene-247;color=#1E90FF;Name=glmS;locus_tag=BSU01780,BSU_01780;Parent=BSGatlas-operon-66 basu168 BSGatlas CDS 200277 202079 . + 0 ID=BSGatlas-gene-247_transcribed;color=#1E90FF;Name=glmS;Parent=BSGatlas-transcript-184,BSGatlas-transcript-185,BSGatlas-transcript-186,BSGatlas-transcript-187;comment="L-glutamine-D-fructose-6-phosphateamidotransferase";synonyms="gcaA,glmS,ybxD";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.6.1.16,EC-2.6.1.16";go="GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity,GO:0005737 cytoplasm,GO:0005975 carbohydrate metabolic process,GO:0006541 glutamine metabolic process,GO:0008152 metabolic process,GO:0008483 transaminase activity,GO:0016051 carbohydrate biosynthetic process,GO:0016740 transferase activity,GO:0030246 carbohydrate binding";derives_from=BSGatlas-gene-247 basu168 BSGatlas operon 201769 203507 . - . ID=BSGatlas-operon-67;color=#B32496 basu168 BSGatlas transcript 201769 203507 . - . ID=BSGatlas-transcript-188;color=#B37924;Parent=BSGatlas-operon-67,BSGatlas-gene-249;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-137 basu168 BSGatlas exon 201769 203507 . - . ID=BSGatlas-transcript-188_exon;Parent=BSGatlas-transcript-188 basu168 BSGatlas UTR 201769 202546 . - . ID=BSGatlas-3'UTR-52;Parent=BSGatlas-transcript-188;comment="3'UTR" basu168 BSGatlas terminator 201769 201835 . - . ID=BSGatlas-terminator-85;Parent=BSGatlas-transcript-188;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas terminator 202043 202087 . + . ID=BSGatlas-terminator-86;Parent=BSGatlas-transcript-184,BSGatlas-transcript-185,BSGatlas-transcript-186,BSGatlas-transcript-187;comment="Based on: Nicolas et al. downshift, Energy: -17.5[kcal/mol]" basu168 BSGatlas gene 202126 202266 . + . ID=BSGatlas-gene-248;color=#1E90FF;Name=ybbU;locus_tag=BSU_01790 basu168 BSGatlas CDS 202126 202266 . + 0 ID=BSGatlas-gene-248_transcribed;color=#1E90FF;Name=ybbU;comment="hypothetical protein";derives_from=BSGatlas-gene-248 basu168 BSGatlas gene 202547 203458 . - . ID=BSGatlas-gene-249;color=#3474B3;Name=alkA;locus_tag=BSU01800,BSU_01800;Parent=BSGatlas-operon-67 basu168 BSGatlas CDS 202547 203458 . - 0 ID=BSGatlas-gene-249_transcribed;color=#3474B3;Name=alkA;Parent=BSGatlas-transcript-188;comment="DNA-3-methyladenine glycosylase; prophage 1region";synonyms="alkA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";ec="3.2.2.21,EC-3.2.2.21";go="GO:0003684 damaged DNA binding,GO:0003824 catalytic activity,GO:0003905 alkylbase DNA N-glycosylase activity,GO:0006281 DNA repair,GO:0006284 base-excision repair,GO:0006289 nucleotide-excision repair,GO:0006974 cellular response to DNA damage stimulus,GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity,GO:0008725 DNA-3-methyladenine glycosylase activity,GO:0016787 hydrolase activity,GO:0043916 DNA-7-methylguanine glycosylase activity,GO:0052821 DNA-7-methyladenine glycosylase activity,GO:0052822 DNA-3-methylguanine glycosylase activity";derives_from=BSGatlas-gene-249 basu168 BSGatlas UTR 203459 203507 . - . ID=BSGatlas-5'UTR-103;Parent=BSGatlas-transcript-188;comment="5'UTR" basu168 BSGatlas TSS 203507 203507 . - . ID=BSGatlas-TSS-137;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,8376346" basu168 BSGatlas operon 203608 204890 . + . ID=BSGatlas-operon-68;color=#FF00CC basu168 BSGatlas transcript 203608 204890 . + . ID=BSGatlas-transcript-189;color=#FF9900;Parent=BSGatlas-operon-68,BSGatlas-gene-250,BSGatlas-gene-251;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-138 basu168 BSGatlas exon 203608 204890 . + . ID=BSGatlas-transcript-189_exon;Parent=BSGatlas-transcript-189 basu168 BSGatlas UTR 203608 203728 . + . ID=BSGatlas-5'UTR-104;Parent=BSGatlas-transcript-189;comment="5'UTR" basu168 BSGatlas TSS 203608 203608 . + . ID=BSGatlas-TSS-138;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,8376346" basu168 BSGatlas gene 203729 204364 . + . ID=BSGatlas-gene-250;color=#1E90FF;Name=adaA;locus_tag=BSU01810,BSU_01810;Parent=BSGatlas-operon-68 basu168 BSGatlas CDS 203729 204364 . + 0 ID=BSGatlas-gene-250_transcribed;color=#1E90FF;Name=adaA;Parent=BSGatlas-transcript-189;comment="methylphosphotriester-DNA alkyltransferase andtranscriptional regulator (AraC/XylS family)";synonyms="adaA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.3 Trigger enzyme,SW 3.4.3.3 Trigger enzymes that act directly as transcription factors by binding DNA,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";ec="2.1.1.63,EC-2.1.1.63";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006281 DNA repair,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0006974 cellular response to DNA damage stimulus,GO:0008168 methyltransferase activity,GO:0008270 zinc ion binding,GO:0016740 transferase activity,GO:0032259 methylation,GO:0043565 sequence-specific DNA binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-250 basu168 BSGatlas gene 204351 204890 . + . ID=BSGatlas-gene-251;color=#1E90FF;Name=adaB;locus_tag=BSU01820,BSU_01820;Parent=BSGatlas-operon-68 basu168 BSGatlas CDS 204351 204890 . + 0 ID=BSGatlas-gene-251_transcribed;color=#1E90FF;Name=adaB;Parent=BSGatlas-transcript-189;comment="O6-methylguanine-DNA methyltransferase; prophage1 region";synonyms="adaB";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";ec="2.1.1.63,EC-2.1.1.63";go="GO:0003824 catalytic activity,GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity,GO:0006281 DNA repair,GO:0006974 cellular response to DNA damage stimulus,GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-251 basu168 BSGatlas TSS 204977 204977 . + . ID=BSGatlas-TSS-139;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 204991 205308 . + . ID=BSGatlas-operon-69;color=#FF00CC basu168 BSGatlas transcript 204991 205308 . + . ID=BSGatlas-transcript-191;color=#FF9900;Parent=BSGatlas-operon-69,BSGatlas-gene-252;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-139 basu168 BSGatlas exon 204991 205308 . + . ID=BSGatlas-transcript-191_exon;Parent=BSGatlas-transcript-191 basu168 BSGatlas gene 204991 205238 . + . ID=BSGatlas-gene-252;color=#CC0000;Name=S72;locus_tag=new_204977_205210;Parent=BSGatlas-operon-69 basu168 BSGatlas transcript 204991 205238 . + . ID=BSGatlas-transcript-190;color=#FF9900;Parent=BSGatlas-operon-69,BSGatlas-gene-252;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-139 basu168 BSGatlas ncRNA 204991 205238 . + . ID=BSGatlas-gene-252_transcribed;color=#CC0000;Name=S72;Parent=BSGatlas-transcript-190,BSGatlas-transcript-191;synonyms="S72";derives_from=BSGatlas-gene-252 basu168 BSGatlas exon 204991 205238 . + . ID=BSGatlas-transcript-190_exon;Parent=BSGatlas-transcript-190 basu168 BSGatlas terminator 205145 205189 . + . ID=BSGatlas-terminator-87;Parent=BSGatlas-transcript-190;comment="Based on: Nicolas et al. downshift, Energy: -17.5[kcal/mol]" basu168 BSGatlas terminator 205229 205308 . + . ID=BSGatlas-terminator-88;Parent=BSGatlas-transcript-191;comment="Based on: BsubCyc,DBTBS, Energy: -31.7[kcal/mol]" basu168 BSGatlas UTR 205239 205308 . + . ID=BSGatlas-3'UTR-53;Parent=BSGatlas-transcript-191;comment="3'UTR" basu168 BSGatlas operon 205409 210946 . + . ID=BSGatlas-operon-70;color=#FF00CC basu168 BSGatlas transcript 205409 210946 . + . ID=BSGatlas-transcript-192;color=#FF9900;Parent=BSGatlas-operon-70,BSGatlas-gene-253,BSGatlas-gene-254,BSGatlas-gene-255,BSGatlas-gene-256,BSGatlas-gene-257;comment="Based on: SubtiWiki" basu168 BSGatlas exon 205409 210946 . + . ID=BSGatlas-transcript-192_exon;Parent=BSGatlas-transcript-192 basu168 BSGatlas gene 205409 206926 . + . ID=BSGatlas-gene-253;color=#1E90FF;Name=ndhF;locus_tag=BSU01830,BSU_01830;Parent=BSGatlas-operon-70 basu168 BSGatlas CDS 205409 206926 . + 0 ID=BSGatlas-gene-253_transcribed;color=#1E90FF;Name=ndhF;Parent=BSGatlas-transcript-192;comment="putative NADH dehydrogenase; prophage 1 region";synonyms="ndhF,ybxE";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.2 Respiration,SW 2.1.2.4 Respiration/ other,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="1.6.-.-";go="GO:0005886 plasma membrane,GO:0008137 NADH dehydrogenase (ubiquinone) activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016491 oxidoreductase activity,GO:0048038 quinone binding,GO:0050136 NADH dehydrogenase (quinone) activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-253 basu168 BSGatlas gene 206941 209556 . + . ID=BSGatlas-gene-254;color=#1E90FF;Name=ybcC;locus_tag=BSU01845,BSU_01845;Parent=BSGatlas-operon-70 basu168 BSGatlas CDS 206941 209556 . + 0 ID=BSGatlas-gene-254_transcribed;color=#1E90FF;Name=ybcC;Parent=BSGatlas-transcript-192;comment="conserved transmembrane protein coupled toNADH-ubiquinone oxidoreductase chain 5 homolog; prophage 1region";synonyms="ybcC,ybcD";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-254 basu168 BSGatlas UTR 209557 209632 . + . ID=BSGatlas-internal_UTR-97;Parent=BSGatlas-transcript-192;comment="internal_UTR" basu168 BSGatlas gene 209633 210160 . + . ID=BSGatlas-gene-255;color=#1E90FF;Name=ybcF;locus_tag=BSU01860,BSU_01860;Parent=BSGatlas-operon-70 basu168 BSGatlas CDS 209633 210160 . + 0 ID=BSGatlas-gene-255_transcribed;color=#1E90FF;Name=ybcF;Parent=BSGatlas-transcript-192;comment="putative enzyme; prophage 1 region";synonyms="ybcF";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="EC-4.2.1.1";go="GO:0004089 carbonate dehydratase activity,GO:0008152 metabolic process,GO:0008270 zinc ion binding";derives_from=BSGatlas-gene-255 basu168 BSGatlas UTR 210161 210223 . + . ID=BSGatlas-internal_UTR-98;Parent=BSGatlas-transcript-192;comment="internal_UTR" basu168 BSGatlas gene 210224 210514 . + . ID=BSGatlas-gene-256;color=#1E90FF;Name=ybcH;locus_tag=BSU01870,BSU_01870;Parent=BSGatlas-operon-70 basu168 BSGatlas CDS 210224 210514 . + 0 ID=BSGatlas-gene-256_transcribed;color=#1E90FF;Name=ybcH;Parent=BSGatlas-transcript-192;comment="conserved protein of unknown function; prophage1 region";synonyms="ybcH";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-256 basu168 BSGatlas UTR 210515 210571 . + . ID=BSGatlas-internal_UTR-99;Parent=BSGatlas-transcript-192;comment="internal_UTR" basu168 BSGatlas gene 210572 210946 . + . ID=BSGatlas-gene-257;color=#1E90FF;Name=ybcI;locus_tag=BSU01880,BSU_01880;Parent=BSGatlas-operon-70 basu168 BSGatlas CDS 210572 210946 . + 0 ID=BSGatlas-gene-257_transcribed;color=#1E90FF;Name=ybcI;Parent=BSGatlas-transcript-192;comment="conserved hypothetical protein; prophage 1region";synonyms="ybcI";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-257 basu168 BSGatlas TSS 211335 211335 . - . ID=BSGatlas-TSS-140;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 211414 211746 . + . ID=BSGatlas-operon-71;color=#FF00CC basu168 BSGatlas transcript 211414 211746 . + . ID=BSGatlas-transcript-193;color=#FF9900;Parent=BSGatlas-operon-71,BSGatlas-gene-258;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-141 basu168 BSGatlas exon 211414 211746 . + . ID=BSGatlas-transcript-193_exon;Parent=BSGatlas-transcript-193 basu168 BSGatlas UTR 211414 211428 . + . ID=BSGatlas-5'UTR-105;Parent=BSGatlas-transcript-193;comment="5'UTR" basu168 BSGatlas TSS 211414 211414 . + . ID=BSGatlas-TSS-141;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 211429 211731 . + . ID=BSGatlas-gene-258;color=#1E90FF;Name=ybzH;locus_tag=BSU01889,BSU_01889;Parent=BSGatlas-operon-71 basu168 BSGatlas CDS 211429 211731 . + 0 ID=BSGatlas-gene-258_transcribed;color=#1E90FF;Name=ybzH;Parent=BSGatlas-transcript-193;comment="putative transcriptional regulator (ArsRfamily); prophage 1 region";synonyms="ybzH";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-258 basu168 BSGatlas terminator 211702 211746 . + . ID=BSGatlas-terminator-89;Parent=BSGatlas-transcript-193;comment="Based on: Nicolas et al. downshift, Energy: -10.8[kcal/mol]" basu168 BSGatlas UTR 211732 211746 . + . ID=BSGatlas-3'UTR-54;Parent=BSGatlas-transcript-193;comment="3'UTR" basu168 BSGatlas operon 211859 213086 . + . ID=BSGatlas-operon-72;color=#FF00CC basu168 BSGatlas transcript 211859 213086 . + . ID=BSGatlas-transcript-195;color=#FF9900;Parent=BSGatlas-operon-72,BSGatlas-gene-259;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-142 basu168 BSGatlas exon 211859 213086 . + . ID=BSGatlas-transcript-195_exon;Parent=BSGatlas-transcript-195 basu168 BSGatlas gene 211859 213031 . + . ID=BSGatlas-gene-259;color=#1E90FF;Name=ybcL;locus_tag=BSU01890,BSU_01890;Parent=BSGatlas-operon-72 basu168 BSGatlas transcript 211859 213031 . + . ID=BSGatlas-transcript-194;color=#FF9900;Parent=BSGatlas-operon-72,BSGatlas-gene-259;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-142 basu168 BSGatlas CDS 211859 213031 . + 0 ID=BSGatlas-gene-259_transcribed;color=#1E90FF;Name=ybcL;Parent=BSGatlas-transcript-194,BSGatlas-transcript-195;comment="putative efflux transporter; prophage 1 region";synonyms="ybcL";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-259 basu168 BSGatlas exon 211859 213031 . + . ID=BSGatlas-transcript-194_exon;Parent=BSGatlas-transcript-194 basu168 BSGatlas TSS 212401 212401 . + . ID=BSGatlas-TSS-142;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 212994 213038 . + . ID=BSGatlas-terminator-90;Parent=BSGatlas-transcript-194;comment="Based on: Nicolas et al. downshift, Energy: -11[kcal/mol]" basu168 BSGatlas UTR 213032 213086 . + . ID=BSGatlas-3'UTR-55;Parent=BSGatlas-transcript-195;comment="3'UTR" basu168 BSGatlas terminator 213042 213086 . + . ID=BSGatlas-terminator-91;Parent=BSGatlas-transcript-195;comment="Based on: BsubCyc,DBTBS, Energy: -14.3[kcal/mol]" basu168 BSGatlas operon 213155 213469 . + . ID=BSGatlas-operon-73;color=#FF00CC basu168 BSGatlas gene 213155 213469 . + . ID=BSGatlas-gene-260;color=#1E90FF;Name=ybcM;locus_tag=BSU01900,BSU_01900;Parent=BSGatlas-operon-73 basu168 BSGatlas transcript 213155 213469 . + . ID=BSGatlas-transcript-196;color=#FF9900;Parent=BSGatlas-operon-73,BSGatlas-gene-260;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-143 basu168 BSGatlas CDS 213155 213469 . + 0 ID=BSGatlas-gene-260_transcribed;color=#1E90FF;Name=ybcM;Parent=BSGatlas-transcript-196;comment="putative enzyme";synonyms="ybcM";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.26 Utilization of pectin,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-260 basu168 BSGatlas exon 213155 213469 . + . ID=BSGatlas-transcript-196_exon;Parent=BSGatlas-transcript-196 basu168 BSGatlas TSS 213283 213283 . + . ID=BSGatlas-TSS-143;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 213327 213371 . + . ID=BSGatlas-terminator-92;Parent=BSGatlas-transcript-196;comment="Based on: Nicolas et al. downshift, Energy: -9.8[kcal/mol]" basu168 BSGatlas operon 213888 220119 . + . ID=BSGatlas-operon-74;color=#FF00CC basu168 BSGatlas transcript 213888 220119 . + . ID=BSGatlas-transcript-198;color=#FF9900;Parent=BSGatlas-operon-74,BSGatlas-gene-261,BSGatlas-gene-262,BSGatlas-gene-263,BSGatlas-gene-264,BSGatlas-gene-265,BSGatlas-gene-266,BSGatlas-gene-267;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-144 basu168 BSGatlas exon 213888 220119 . + . ID=BSGatlas-transcript-198_exon;Parent=BSGatlas-transcript-198 basu168 BSGatlas transcript 213888 214163 . + . ID=BSGatlas-transcript-197;color=#FF9900;Parent=BSGatlas-operon-74,BSGatlas-gene-261;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-144 basu168 BSGatlas exon 213888 214163 . + . ID=BSGatlas-transcript-197_exon;Parent=BSGatlas-transcript-197 basu168 BSGatlas UTR 213888 213940 . + . ID=BSGatlas-5'UTR-106;Parent=BSGatlas-transcript-197,BSGatlas-transcript-198;comment="5'UTR" basu168 BSGatlas TSS 213888 213888 . + . ID=BSGatlas-TSS-144;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 16452424,17962296" basu168 BSGatlas terminator 213932 213976 . - . ID=BSGatlas-terminator-93;comment="Based on: Nicolas et al. downshift, Energy: -3.5[kcal/mol]" basu168 BSGatlas gene 213941 214108 . + . ID=BSGatlas-gene-261;color=#1E90FF;Name=skfA;locus_tag=BSU01910,BSU_01910;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 213941 214108 . + 0 ID=BSGatlas-gene-261_transcribed;color=#1E90FF;Name=skfA;Parent=BSGatlas-transcript-197,BSGatlas-transcript-198;comment="sporulation killing factor A";synonyms="skfA,ybcO";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";go="GO:0005576 extracellular region,GO:0042742 defense response to bacterium";derives_from=BSGatlas-gene-261 basu168 BSGatlas terminator 214106 214163 . + . ID=BSGatlas-terminator-94;Parent=BSGatlas-transcript-197;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.4[kcal/mol]" basu168 BSGatlas UTR 214109 214174 . + . ID=BSGatlas-internal_UTR-100;Parent=BSGatlas-transcript-198;comment="internal_UTR" basu168 BSGatlas UTR 214109 214163 . + . ID=BSGatlas-3'UTR-56;Parent=BSGatlas-transcript-197;comment="3'UTR" basu168 BSGatlas gene 214175 215407 . + . ID=BSGatlas-gene-262;color=#1E90FF;Name=skfB;locus_tag=BSU01920,BSU_01920;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 214175 215407 . + 0 ID=BSGatlas-gene-262_transcribed;color=#1E90FF;Name=skfB;Parent=BSGatlas-transcript-198;comment="synthesis of sporulation killing factor A";synonyms="skfB,ybcP,ybcQ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0046872 metal ion binding,GO:0051536 iron-sulfur cluster binding,GO:0051539 4 iron, 4 sulfur cluster binding";derives_from=BSGatlas-gene-262 basu168 BSGatlas gene 215404 216894 . + . ID=BSGatlas-gene-263;color=#1E90FF;Name=skfC;locus_tag=BSU01935,BSU_01935;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 215404 216894 . + 0 ID=BSGatlas-gene-263_transcribed;color=#1E90FF;Name=skfC;Parent=BSGatlas-transcript-198;comment="sporulation killing factor biosynthesis andexport";synonyms="skfC,skfD,ybcS,ybcT";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1";derives_from=BSGatlas-gene-263 basu168 BSGatlas transcript 216321 220119 . + . ID=BSGatlas-transcript-199;color=#FF9900;Parent=BSGatlas-operon-74,BSGatlas-gene-264,BSGatlas-gene-265,BSGatlas-gene-266,BSGatlas-gene-267;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-145 basu168 BSGatlas exon 216321 220119 . + . ID=BSGatlas-transcript-199_exon;Parent=BSGatlas-transcript-199 basu168 BSGatlas UTR 216321 216912 . + . ID=BSGatlas-5'UTR-107;Parent=BSGatlas-transcript-199;comment="5'UTR" basu168 BSGatlas TSS 216321 216321 . + . ID=BSGatlas-TSS-145;color=#FF0000;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 216331 216331 . - . ID=BSGatlas-TSS-146;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 216895 216912 . + . ID=BSGatlas-internal_UTR-101;Parent=BSGatlas-transcript-198;comment="internal_UTR" basu168 BSGatlas gene 216913 217632 . + . ID=BSGatlas-gene-264;color=#1E90FF;Name=skfE;locus_tag=BSU01950,BSU_01950;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 216913 217632 . + 0 ID=BSGatlas-gene-264_transcribed;color=#1E90FF;Name=skfE;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="sporulation killing factor biosynthesis andexport; ABC transporter (binding protein)";synonyms="skfE,ybdA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.3 Export of peptides,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.3.25";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008152 metabolic process,GO:0015419 ATPase-coupled sulfate transmembrane transporter activity,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity,GO:1902358 sulfate transmembrane transport";derives_from=BSGatlas-gene-264 basu168 BSGatlas UTR 217633 217696 . + . ID=BSGatlas-internal_UTR-102;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="internal_UTR" basu168 BSGatlas gene 217697 219040 . + . ID=BSGatlas-gene-265;color=#1E90FF;Name=skfF;locus_tag=BSU01960,BSU_01960;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 217697 219040 . + 0 ID=BSGatlas-gene-265_transcribed;color=#1E90FF;Name=skfF;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="sporulation killing factor biosynthesis andexport; ABC transporter (permease)";synonyms="skfF,ybdB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.3 Export of peptides,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-265 basu168 BSGatlas UTR 219041 219086 . + . ID=BSGatlas-internal_UTR-103;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="internal_UTR" basu168 BSGatlas gene 219087 219602 . + . ID=BSGatlas-gene-266;color=#1E90FF;Name=skfG;locus_tag=BSU01970,BSU_01970;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 219087 219602 . + 0 ID=BSGatlas-gene-266_transcribed;color=#1E90FF;Name=skfG;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="sporulation killing factor biosynthesis andexport";synonyms="skfG,ybdD";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-266 basu168 BSGatlas gene 219607 220032 . + . ID=BSGatlas-gene-267;color=#1E90FF;Name=skfH;locus_tag=BSU01980,BSU_01980;Parent=BSGatlas-operon-74 basu168 BSGatlas CDS 219607 220032 . + 0 ID=BSGatlas-gene-267_transcribed;color=#1E90FF;Name=skfH;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="sibling killing effect; sporulation killingfactor biosynthesis and export";synonyms="skfH,ybdE";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.1 Prophages,SW 5.1.4 Prophage 1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-267 basu168 BSGatlas UTR 220033 220119 . + . ID=BSGatlas-3'UTR-57;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="3'UTR" basu168 BSGatlas terminator 220075 220119 . + . ID=BSGatlas-terminator-95;Parent=BSGatlas-transcript-198,BSGatlas-transcript-199;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -10.9[kcal/mol]" basu168 BSGatlas gene 220279 221256 . + . ID=BSGatlas-gene-268;color=#1E90FF;Name=ybdG;locus_tag=BSU01990,BSU_01990 basu168 BSGatlas CDS 220279 221256 . + 0 ID=BSGatlas-gene-268_transcribed;color=#1E90FF;Name=ybdG;comment="putative hydrolase/transferase";synonyms="ybdG";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-268 basu168 BSGatlas gene 221258 221929 . + . ID=BSGatlas-gene-269;color=#1E90FF;Name=ybdJ;locus_tag=BSU02000,BSU_02000 basu168 BSGatlas CDS 221258 221929 . + 0 ID=BSGatlas-gene-269_transcribed;color=#1E90FF;Name=ybdJ;comment="two-component system response regulator [YbdK]";synonyms="ybdJ";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-269 basu168 BSGatlas operon 221861 222912 . + . ID=BSGatlas-operon-75;color=#FF00CC basu168 BSGatlas transcript 221861 222912 . + . ID=BSGatlas-transcript-200;color=#FF9900;Parent=BSGatlas-operon-75,BSGatlas-gene-270;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-147 basu168 BSGatlas exon 221861 222912 . + . ID=BSGatlas-transcript-200_exon;Parent=BSGatlas-transcript-200 basu168 BSGatlas UTR 221861 221949 . + . ID=BSGatlas-5'UTR-108;Parent=BSGatlas-transcript-200;comment="5'UTR" basu168 BSGatlas TSS 221861 221861 . + . ID=BSGatlas-TSS-147;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 221950 222912 . + . ID=BSGatlas-gene-270;color=#1E90FF;Name=ybdK;locus_tag=BSU02010,BSU_02010;Parent=BSGatlas-operon-75 basu168 BSGatlas CDS 221950 222912 . + 0 ID=BSGatlas-gene-270_transcribed;color=#1E90FF;Name=ybdK;Parent=BSGatlas-transcript-200;comment="two-component system sensor histidine kinase[YbdJ]";synonyms="ybdK";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000155 phosphorelay sensor kinase activity,GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0004871 NA,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0018106 peptidyl-histidine phosphorylation,GO:0023014 signal transduction by protein phosphorylation";derives_from=BSGatlas-gene-270 basu168 BSGatlas operon 222945 223234 . + . ID=BSGatlas-operon-76;color=#FF00CC basu168 BSGatlas transcript 222945 223234 . + . ID=BSGatlas-transcript-201;color=#FF9900;Parent=BSGatlas-operon-76,BSGatlas-gene-271;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-148 basu168 BSGatlas exon 222945 223234 . + . ID=BSGatlas-transcript-201_exon;Parent=BSGatlas-transcript-201 basu168 BSGatlas UTR 222945 222970 . + . ID=BSGatlas-5'UTR-109;Parent=BSGatlas-transcript-201;comment="5'UTR" basu168 BSGatlas TSS 222945 222945 . + . ID=BSGatlas-TSS-148;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 222971 223234 . + . ID=BSGatlas-gene-271;color=#1E90FF;Name=ybzI;locus_tag=BSU02019,BSU_02019;Parent=BSGatlas-operon-76 basu168 BSGatlas CDS 222971 223234 . + 0 ID=BSGatlas-gene-271_transcribed;color=#1E90FF;Name=ybzI;Parent=BSGatlas-transcript-201;comment="conserved protein of unknown function";synonyms="ybzI";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-271 basu168 BSGatlas terminator 223153 223197 . + . ID=BSGatlas-terminator-96;Parent=BSGatlas-transcript-201;comment="Based on: Nicolas et al. downshift, Energy: -12.1[kcal/mol]" basu168 BSGatlas operon 223219 224181 . - . ID=BSGatlas-operon-77;color=#B32496 basu168 BSGatlas transcript 223219 224181 . - . ID=BSGatlas-transcript-202;color=#B37924;Parent=BSGatlas-operon-77,BSGatlas-gene-272;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-149 basu168 BSGatlas exon 223219 224181 . - . ID=BSGatlas-transcript-202_exon;Parent=BSGatlas-transcript-202 basu168 BSGatlas gene 223219 223989 . - . ID=BSGatlas-gene-272;color=#3474B3;Name=ybdM;locus_tag=BSU02030,BSU_02030;Parent=BSGatlas-operon-77 basu168 BSGatlas CDS 223219 223989 . - 0 ID=BSGatlas-gene-272_transcribed;color=#3474B3;Name=ybdM;Parent=BSGatlas-transcript-202;comment="putative protein kinase";synonyms="prkD,ybdM";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.6 Phosphorylation on a Thr residue";ec="2.7.11.-,2.7.11.1,EC-2.7.11.21;EC-2.7.11.22;EC-2.7.11.13;EC-2.7.11.1;EC-2.7.11.17;EC-2.7.11.12";go="GO:0000166 nucleotide binding,GO:0004672 protein kinase activity,GO:0004674 protein serine/threonine kinase activity,GO:0005524 ATP binding,GO:0006468 protein phosphorylation,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups";derives_from=BSGatlas-gene-272 basu168 BSGatlas UTR 223990 224181 . - . ID=BSGatlas-5'UTR-110;Parent=BSGatlas-transcript-202;comment="5'UTR" basu168 BSGatlas operon 224075 224970 . - . ID=BSGatlas-operon-78;color=#B32496 basu168 BSGatlas transcript 224075 224970 . - . ID=BSGatlas-transcript-203;color=#B37924;Parent=BSGatlas-operon-78,BSGatlas-gene-273;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-150 basu168 BSGatlas exon 224075 224970 . - . ID=BSGatlas-transcript-203_exon;Parent=BSGatlas-transcript-203 basu168 BSGatlas gene 224075 224932 . - . ID=BSGatlas-gene-273;color=#3474B3;Name=ybdN;locus_tag=BSU02040,BSU_02040;Parent=BSGatlas-operon-78 basu168 BSGatlas CDS 224075 224932 . - 0 ID=BSGatlas-gene-273_transcribed;color=#3474B3;Name=ybdN;Parent=BSGatlas-transcript-203;comment="putative phage protein; prophage region 1";synonyms="ybdN";subtiwiki_category="SW 6 Groups of genes,SW 6.12 Secreted proteins,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-273 basu168 BSGatlas terminator 224075 224119 . - . ID=BSGatlas-terminator-97;Parent=BSGatlas-transcript-203;comment="Based on: Nicolas et al. downshift, Energy: -11.9[kcal/mol]" basu168 BSGatlas TSS 224181 224181 . - . ID=BSGatlas-TSS-149;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 224933 224970 . - . ID=BSGatlas-5'UTR-111;Parent=BSGatlas-transcript-203;comment="5'UTR" basu168 BSGatlas TSS 224970 224970 . - . ID=BSGatlas-TSS-150;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 225023 226289 . + . ID=BSGatlas-operon-79;color=#FF00CC basu168 BSGatlas transcript 225023 226289 . + . ID=BSGatlas-transcript-204;color=#FF9900;Parent=BSGatlas-operon-79,BSGatlas-gene-274;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-151 basu168 BSGatlas exon 225023 226289 . + . ID=BSGatlas-transcript-204_exon;Parent=BSGatlas-transcript-204 basu168 BSGatlas UTR 225023 225063 . + . ID=BSGatlas-5'UTR-112;Parent=BSGatlas-transcript-204;comment="5'UTR" basu168 BSGatlas TSS 225023 225023 . + . ID=BSGatlas-TSS-151;color=#FF0000;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 225064 226248 . + . ID=BSGatlas-gene-274;color=#1E90FF;Name=ybdO;locus_tag=BSU02050,BSU_02050;Parent=BSGatlas-operon-79 basu168 BSGatlas CDS 225064 226248 . + 0 ID=BSGatlas-gene-274_transcribed;color=#1E90FF;Name=ybdO;Parent=BSGatlas-transcript-204;comment="putative phage protein; prophage region 1";synonyms="ybdO";subtiwiki_category="SW 6 Groups of genes,SW 6.12 Secreted proteins,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-274 basu168 BSGatlas terminator 226245 226289 . + . ID=BSGatlas-terminator-98;Parent=BSGatlas-transcript-204;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.2[kcal/mol]" basu168 BSGatlas UTR 226249 226289 . + . ID=BSGatlas-3'UTR-58;Parent=BSGatlas-transcript-204;comment="3'UTR" basu168 BSGatlas operon 226436 227999 . + . ID=BSGatlas-operon-80;color=#FF00CC basu168 BSGatlas transcript 226436 227999 . + . ID=BSGatlas-transcript-205;color=#FF9900;Parent=BSGatlas-operon-80,BSGatlas-gene-275;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-152 basu168 BSGatlas exon 226436 227999 . + . ID=BSGatlas-transcript-205_exon;Parent=BSGatlas-transcript-205 basu168 BSGatlas UTR 226436 226565 . + . ID=BSGatlas-5'UTR-113;Parent=BSGatlas-transcript-205;comment="5'UTR" basu168 BSGatlas TSS 226436 226436 . + . ID=BSGatlas-TSS-152;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 226566 227954 . + . ID=BSGatlas-gene-275;color=#1E90FF;Name=ybxG;locus_tag=BSU02060,BSU_02060;Parent=BSGatlas-operon-80 basu168 BSGatlas CDS 226566 227954 . + 0 ID=BSGatlas-gene-275_transcribed;color=#1E90FF;Name=ybxG;Parent=BSGatlas-transcript-205;comment="putative amino acid permease";synonyms="ybdP,ybxG";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.2 Other amino acid transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-275 basu168 BSGatlas UTR 227955 227999 . + . ID=BSGatlas-3'UTR-59;Parent=BSGatlas-transcript-205;comment="3'UTR" basu168 BSGatlas terminator 227960 227999 . + . ID=BSGatlas-terminator-99;Parent=BSGatlas-transcript-205;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas operon 228021 228557 . + . ID=BSGatlas-operon-81;color=#FF00CC basu168 BSGatlas transcript 228021 228557 . + . ID=BSGatlas-transcript-206;color=#FF9900;Parent=BSGatlas-operon-81,BSGatlas-gene-276,BSGatlas-gene-277;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-153 basu168 BSGatlas exon 228021 228557 . + . ID=BSGatlas-transcript-206_exon;Parent=BSGatlas-transcript-206 basu168 BSGatlas UTR 228021 228065 . + . ID=BSGatlas-5'UTR-114;Parent=BSGatlas-transcript-206;comment="5'UTR" basu168 BSGatlas TSS 228021 228021 . + . ID=BSGatlas-TSS-153;color=#FF0000;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 228066 228314 . + . ID=BSGatlas-gene-276;color=#1E90FF;Name=csgA;locus_tag=BSU02070,BSU_02070;Parent=BSGatlas-operon-81 basu168 BSGatlas CDS 228066 228314 . + 0 ID=BSGatlas-gene-276_transcribed;color=#1E90FF;Name=csgA;Parent=BSGatlas-transcript-206;comment="sporulation-specific SASP protein";synonyms="csgA";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.2 Additional germination proteins";go="GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-276 basu168 BSGatlas operon 228230 229382 . - . ID=BSGatlas-operon-82;color=#B32496 basu168 BSGatlas transcript 228230 229382 . - . ID=BSGatlas-transcript-207;color=#B37924;Parent=BSGatlas-operon-82,BSGatlas-gene-278;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-154 basu168 BSGatlas exon 228230 229382 . - . ID=BSGatlas-transcript-207_exon;Parent=BSGatlas-transcript-207 basu168 BSGatlas UTR 228230 228548 . - . ID=BSGatlas-3'UTR-60;Parent=BSGatlas-transcript-207;comment="3'UTR" basu168 BSGatlas terminator 228230 228267 . - . ID=BSGatlas-terminator-100;Parent=BSGatlas-transcript-207;comment="Based on: BsubCyc,DBTBS, Energy: -5.5[kcal/mol]" basu168 BSGatlas UTR 228315 228330 . + . ID=BSGatlas-internal_UTR-104;Parent=BSGatlas-transcript-206;comment="internal_UTR" basu168 BSGatlas gene 228331 228522 . + . ID=BSGatlas-gene-277;color=#1E90FF;Name=ybxH;locus_tag=BSU02080,BSU_02080;Parent=BSGatlas-operon-81 basu168 BSGatlas CDS 228331 228522 . + 0 ID=BSGatlas-gene-277_transcribed;color=#1E90FF;Name=ybxH;Parent=BSGatlas-transcript-206;comment="conserved protein of unknown function";synonyms="ybxH";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-277 basu168 BSGatlas terminator 228517 228557 . + . ID=BSGatlas-terminator-101;Parent=BSGatlas-transcript-206;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.2[kcal/mol]" basu168 BSGatlas UTR 228523 228557 . + . ID=BSGatlas-3'UTR-61;Parent=BSGatlas-transcript-206;comment="3'UTR" basu168 BSGatlas gene 228549 229352 . - . ID=BSGatlas-gene-278;color=#3474B3;Name=ybxI;locus_tag=BSU02090,BSU_02090;Parent=BSGatlas-operon-82 basu168 BSGatlas CDS 228549 229352 . - 0 ID=BSGatlas-gene-278_transcribed;color=#3474B3;Name=ybxI;Parent=BSGatlas-transcript-207;comment="exported beta-lactamase";synonyms="ybdS,ybxI";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.5.2.6,EC-3.5.2.6";go="GO:0008658 penicillin binding,GO:0008800 beta-lactamase activity,GO:0016787 hydrolase activity,GO:0017001 antibiotic catabolic process,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-278 basu168 BSGatlas UTR 229353 229382 . - . ID=BSGatlas-5'UTR-115;Parent=BSGatlas-transcript-207;comment="5'UTR" basu168 BSGatlas TSS 229382 229382 . - . ID=BSGatlas-TSS-154;color=#B32424;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 229493 230826 . + . ID=BSGatlas-operon-83;color=#FF00CC basu168 BSGatlas transcript 229493 230826 . + . ID=BSGatlas-transcript-208;color=#FF9900;Parent=BSGatlas-operon-83,BSGatlas-gene-279;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-155 basu168 BSGatlas exon 229493 230826 . + . ID=BSGatlas-transcript-208_exon;Parent=BSGatlas-transcript-208 basu168 BSGatlas UTR 229493 229524 . + . ID=BSGatlas-5'UTR-116;Parent=BSGatlas-transcript-208;comment="5'UTR" basu168 BSGatlas TSS 229493 229493 . + . ID=BSGatlas-TSS-155;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 229525 230826 . + . ID=BSGatlas-transcript-209;color=#FF9900;Parent=BSGatlas-operon-83,BSGatlas-gene-279;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-156 basu168 BSGatlas exon 229525 230826 . + . ID=BSGatlas-transcript-209_exon;Parent=BSGatlas-transcript-209 basu168 BSGatlas gene 229525 230778 . + . ID=BSGatlas-gene-279;color=#1E90FF;Name=cypC;locus_tag=BSU02100,BSU_02100;Parent=BSGatlas-operon-83 basu168 BSGatlas CDS 229525 230778 . + 0 ID=BSGatlas-gene-279_transcribed;color=#1E90FF;Name=cypC;Parent=BSGatlas-transcript-208,BSGatlas-transcript-209;comment="fatty acid beta-hydroxylating cytochrome P450";synonyms="cypC,ybdT";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.3 Electron transport/ other,SW 2.4 Lipid metabolism,SW 2.4.3 Lipid metabolism/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.8 Resistance against oxidative and electrophile stress";ec="1.11.2.4";go="GO:0000303 response to superoxide,GO:0004497 monooxygenase activity,GO:0005506 iron ion binding,GO:0016491 oxidoreductase activity,GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,GO:0020037 heme binding,GO:0042542 response to hydrogen peroxide,GO:0046872 metal ion binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-279 basu168 BSGatlas TSS 229847 229847 . + . ID=BSGatlas-TSS-156;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 230772 231118 . - . ID=BSGatlas-operon-84;color=#B32496 basu168 BSGatlas transcript 230772 231118 . - . ID=BSGatlas-transcript-210;color=#B37924;Parent=BSGatlas-operon-84,BSGatlas-gene-280;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-157 basu168 BSGatlas exon 230772 231118 . - . ID=BSGatlas-transcript-210_exon;Parent=BSGatlas-transcript-210 basu168 BSGatlas UTR 230772 230818 . - . ID=BSGatlas-3'UTR-62;Parent=BSGatlas-transcript-210;comment="3'UTR" basu168 BSGatlas terminator 230772 230816 . - . ID=BSGatlas-terminator-102;Parent=BSGatlas-transcript-210;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.1[kcal/mol]" basu168 BSGatlas UTR 230779 230826 . + . ID=BSGatlas-3'UTR-63;Parent=BSGatlas-transcript-208,BSGatlas-transcript-209;comment="3'UTR" basu168 BSGatlas terminator 230782 230826 . + . ID=BSGatlas-terminator-103;Parent=BSGatlas-transcript-208,BSGatlas-transcript-209;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas gene 230819 231079 . - . ID=BSGatlas-gene-280;color=#3474B3;Name=ybyB;locus_tag=BSU02110,BSU_02110;Parent=BSGatlas-operon-84 basu168 BSGatlas CDS 230819 231079 . - 0 ID=BSGatlas-gene-280_transcribed;color=#3474B3;Name=ybyB;Parent=BSGatlas-transcript-210;comment="conserved protein of unknown function";synonyms="ybyB";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";derives_from=BSGatlas-gene-280 basu168 BSGatlas UTR 231080 231118 . - . ID=BSGatlas-5'UTR-117;Parent=BSGatlas-transcript-210;comment="5'UTR" basu168 BSGatlas TSS 231118 231118 . - . ID=BSGatlas-TSS-157;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 231288 233018 . + . ID=BSGatlas-operon-85;color=#FF00CC basu168 BSGatlas transcript 231288 233018 . + . ID=BSGatlas-transcript-212;color=#FF9900;Parent=BSGatlas-operon-85,BSGatlas-gene-281;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-158 basu168 BSGatlas exon 231288 233018 . + . ID=BSGatlas-transcript-212_exon;Parent=BSGatlas-transcript-212 basu168 BSGatlas transcript 231288 232967 . + . ID=BSGatlas-transcript-211;color=#FF9900;Parent=BSGatlas-operon-85,BSGatlas-gene-281;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-158 basu168 BSGatlas exon 231288 232967 . + . ID=BSGatlas-transcript-211_exon;Parent=BSGatlas-transcript-211 basu168 BSGatlas UTR 231288 231347 . + . ID=BSGatlas-5'UTR-118;Parent=BSGatlas-transcript-211,BSGatlas-transcript-212;comment="5'UTR" basu168 BSGatlas TSS 231288 231288 . + . ID=BSGatlas-TSS-158;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 231348 232967 . + . ID=BSGatlas-gene-281;color=#1E90FF;Name=ybeC;locus_tag=BSU02120,BSU_02120;Parent=BSGatlas-operon-85 basu168 BSGatlas CDS 231348 232967 . + 0 ID=BSGatlas-gene-281_transcribed;color=#1E90FF;Name=ybeC;Parent=BSGatlas-transcript-211,BSGatlas-transcript-212;comment="putative H+/amino acid transporter";synonyms="ybeC";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0015293 symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-281 basu168 BSGatlas terminator 232928 232972 . + . ID=BSGatlas-terminator-104;Parent=BSGatlas-transcript-211;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas operon 232967 235483 . - . ID=BSGatlas-operon-86;color=#B32496 basu168 BSGatlas transcript 232967 235483 . - . ID=BSGatlas-transcript-215;color=#B37924;Parent=BSGatlas-operon-86,BSGatlas-gene-283,BSGatlas-gene-282;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-162 basu168 BSGatlas exon 232967 235483 . - . ID=BSGatlas-transcript-215_exon;Parent=BSGatlas-transcript-215 basu168 BSGatlas transcript 232967 235401 . - . ID=BSGatlas-transcript-214;color=#B37924;Parent=BSGatlas-operon-86,BSGatlas-gene-283,BSGatlas-gene-282;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-161 basu168 BSGatlas exon 232967 235401 . - . ID=BSGatlas-transcript-214_exon;Parent=BSGatlas-transcript-214 basu168 BSGatlas transcript 232967 233928 . - . ID=BSGatlas-transcript-213;color=#B37924;Parent=BSGatlas-operon-86,BSGatlas-gene-282;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-159 basu168 BSGatlas exon 232967 233928 . - . ID=BSGatlas-transcript-213_exon;Parent=BSGatlas-transcript-213 basu168 BSGatlas UTR 232967 233013 . - . ID=BSGatlas-3'UTR-64;Parent=BSGatlas-transcript-213,BSGatlas-transcript-214,BSGatlas-transcript-215;comment="3'UTR" basu168 BSGatlas terminator 232967 233008 . - . ID=BSGatlas-terminator-105;Parent=BSGatlas-transcript-213,BSGatlas-transcript-214,BSGatlas-transcript-215;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas UTR 232968 233018 . + . ID=BSGatlas-3'UTR-65;Parent=BSGatlas-transcript-212;comment="3'UTR" basu168 BSGatlas terminator 232977 233018 . + . ID=BSGatlas-terminator-106;Parent=BSGatlas-transcript-212;comment="Based on: BsubCyc,DBTBS, Energy: -15.9[kcal/mol]" basu168 BSGatlas gene 233014 233895 . - . ID=BSGatlas-gene-282;color=#3474B3;Name=glpQA;locus_tag=BSU02130,BSU_02130;Parent=BSGatlas-operon-86 basu168 BSGatlas CDS 233014 233895 . - 0 ID=BSGatlas-gene-282_transcribed;color=#3474B3;Name=glpQA;Parent=BSGatlas-transcript-213,BSGatlas-transcript-214,BSGatlas-transcript-215;comment="secreted glycerophosphoryl diesterphosphodiesterase";synonyms="glpQ,ybeD";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.1 Utilization of phospholipids,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.1.4.46,EC-3.1.4.46";go="GO:0006071 glycerol metabolic process,GO:0006629 lipid metabolic process,GO:0008081 phosphoric diester hydrolase activity,GO:0008889 glycerophosphodiester phosphodiesterase activity,GO:0016787 hydrolase activity,GO:0046872 metal ion binding,GO:0070399 wall teichoic acid catabolic process";derives_from=BSGatlas-gene-282 basu168 BSGatlas UTR 233896 233993 . - . ID=BSGatlas-internal_UTR-105;Parent=BSGatlas-transcript-214,BSGatlas-transcript-215;comment="internal_UTR" basu168 BSGatlas UTR 233896 233928 . - . ID=BSGatlas-5'UTR-119;Parent=BSGatlas-transcript-213;comment="5'UTR" basu168 BSGatlas TSS 233928 233928 . - . ID=BSGatlas-TSS-159;color=#B32424;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10913081" basu168 BSGatlas transcript 233994 235483 . - . ID=BSGatlas-transcript-217;color=#B37924;Parent=BSGatlas-operon-86,BSGatlas-gene-283;comment="Based on: DBTBS";transcribed_from=BSGatlas-TSS-162 basu168 BSGatlas exon 233994 235483 . - . ID=BSGatlas-transcript-217_exon;Parent=BSGatlas-transcript-217 basu168 BSGatlas transcript 233994 235401 . - . ID=BSGatlas-transcript-216;color=#B37924;Parent=BSGatlas-operon-86,BSGatlas-gene-283;comment="Based on: DBTBS";transcribed_from=BSGatlas-TSS-161 basu168 BSGatlas exon 233994 235401 . - . ID=BSGatlas-transcript-216_exon;Parent=BSGatlas-transcript-216 basu168 BSGatlas gene 233994 235328 . - . ID=BSGatlas-gene-283;color=#3474B3;Name=glpT;locus_tag=BSU02140,BSU_02140;Parent=BSGatlas-operon-86 basu168 BSGatlas CDS 233994 235328 . - 0 ID=BSGatlas-gene-283_transcribed;color=#3474B3;Name=glpT;Parent=BSGatlas-transcript-214,BSGatlas-transcript-215,BSGatlas-transcript-216,BSGatlas-transcript-217;comment="sn-glycerol-3-phosphate permease";synonyms="glpT,ybeE";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.3 Carbohydrate transporter,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.1 Utilization of phospholipids,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006071 glycerol metabolic process,GO:0006810 transport,GO:0015169 glycerol-3-phosphate transmembrane transporter activity,GO:0015791 polyol transport,GO:0015794 glycerol-3-phosphate transmembrane transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034220 ion transmembrane transport,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-283 basu168 BSGatlas operon 234998 235624 . + . ID=BSGatlas-operon-87;color=#FF00CC basu168 BSGatlas gene 234998 235624 . + . ID=BSGatlas-gene-284;color=#CC0000;Name=S81;locus_tag=new_234998_235624;Parent=BSGatlas-operon-87 basu168 BSGatlas transcript 234998 235624 . + . ID=BSGatlas-transcript-218;color=#FF9900;Parent=BSGatlas-operon-87,BSGatlas-gene-284;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-160 basu168 BSGatlas ncRNA 234998 235624 . + . ID=BSGatlas-gene-284_transcribed;color=#CC0000;Name=S81;Parent=BSGatlas-transcript-218;synonyms="S81";derives_from=BSGatlas-gene-284 basu168 BSGatlas exon 234998 235624 . + . ID=BSGatlas-transcript-218_exon;Parent=BSGatlas-transcript-218 basu168 BSGatlas TSS 234998 234998 . + . ID=BSGatlas-TSS-160;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 235329 235483 . - . ID=BSGatlas-5'UTR-121;Parent=BSGatlas-transcript-215,BSGatlas-transcript-217;comment="5'UTR" basu168 BSGatlas UTR 235329 235401 . - . ID=BSGatlas-5'UTR-120;Parent=BSGatlas-transcript-214,BSGatlas-transcript-216;comment="5'UTR" basu168 BSGatlas operon 235390 235481 . - . ID=BSGatlas-operon-88;color=#B32496 basu168 BSGatlas gene 235390 235481 . - . ID=BSGatlas-gene-285;color=#6B6B6B;Name=glpP dependent leader;Parent=BSGatlas-operon-88 basu168 BSGatlas transcript 235390 235481 . - . ID=BSGatlas-transcript-219;color=#B37924;Parent=BSGatlas-operon-88,BSGatlas-gene-285;comment="Based on: BSGatlas" basu168 BSGatlas riboswitch 235390 235481 . - . ID=BSGatlas-gene-285_transcribed;color=#6B6B6B;Name=glpP dependent leader;Parent=BSGatlas-transcript-219;derives_from=BSGatlas-gene-285 basu168 BSGatlas exon 235390 235481 . - . ID=BSGatlas-transcript-219_exon;Parent=BSGatlas-transcript-219 basu168 BSGatlas terminator 235392 235433 . - . ID=BSGatlas-terminator-107;Parent=BSGatlas-transcript-219;comment="Based on: BsubCyc,DBTBS, Energy: -12.8[kcal/mol]" basu168 BSGatlas TSS 235401 235401 . - . ID=BSGatlas-TSS-161;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 235483 235483 . - . ID=BSGatlas-TSS-162;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,8012593" basu168 BSGatlas operon 235625 238129 . + . ID=BSGatlas-operon-89;color=#FF00CC basu168 BSGatlas transcript 235625 238129 . + . ID=BSGatlas-transcript-220;color=#FF9900;Parent=BSGatlas-operon-89,BSGatlas-gene-286,BSGatlas-gene-287,BSGatlas-gene-288;comment="Based on: SubtiWiki" basu168 BSGatlas exon 235625 238129 . + . ID=BSGatlas-transcript-220_exon;Parent=BSGatlas-transcript-220 basu168 BSGatlas gene 235625 235873 . + . ID=BSGatlas-gene-286;color=#1E90FF;Name=ybeF;locus_tag=BSU02150,BSU_02150;Parent=BSGatlas-operon-89 basu168 BSGatlas CDS 235625 235873 . + 0 ID=BSGatlas-gene-286_transcribed;color=#1E90FF;Name=ybeF;Parent=BSGatlas-transcript-220;comment="conserved protein of unknown function";synonyms="ybeF";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-286 basu168 BSGatlas UTR 235874 235964 . + . ID=BSGatlas-internal_UTR-106;Parent=BSGatlas-transcript-220;comment="internal_UTR" basu168 BSGatlas transcript 235904 238129 . + . ID=BSGatlas-transcript-221;color=#FF9900;Parent=BSGatlas-operon-89,BSGatlas-gene-287,BSGatlas-gene-288;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-163 basu168 BSGatlas exon 235904 238129 . + . ID=BSGatlas-transcript-221_exon;Parent=BSGatlas-transcript-221 basu168 BSGatlas UTR 235904 235964 . + . ID=BSGatlas-5'UTR-122;Parent=BSGatlas-transcript-221;comment="5'UTR" basu168 BSGatlas TSS 235904 235904 . + . ID=BSGatlas-TSS-163;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 235965 236882 . + . ID=BSGatlas-gene-287;color=#1E90FF;Name=ybfA;locus_tag=BSU02160,BSU_02160;Parent=BSGatlas-operon-89 basu168 BSGatlas CDS 235965 236882 . + 0 ID=BSGatlas-gene-287_transcribed;color=#1E90FF;Name=ybfA;Parent=BSGatlas-transcript-220,BSGatlas-transcript-221;comment="putative transcriptional regulator withacetyltransferase domain";synonyms="ybfA";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008080 N-acetyltransferase activity,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups";derives_from=BSGatlas-gene-287 basu168 BSGatlas gene 236879 238129 . + . ID=BSGatlas-gene-288;color=#1E90FF;Name=ybfB;locus_tag=BSU02170,BSU_02170;Parent=BSGatlas-operon-89 basu168 BSGatlas CDS 236879 238129 . + 0 ID=BSGatlas-gene-288_transcribed;color=#1E90FF;Name=ybfB;Parent=BSGatlas-transcript-220,BSGatlas-transcript-221;comment="putative carboxylate transporter";synonyms="ybfB";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-288 basu168 BSGatlas terminator 238097 238141 . + . ID=BSGatlas-terminator-108;Parent=BSGatlas-transcript-220,BSGatlas-transcript-221;comment="Based on: Nicolas et al. downshift, Energy: -9.5[kcal/mol]" basu168 BSGatlas operon 238164 241889 . - . ID=BSGatlas-operon-90;color=#B32496 basu168 BSGatlas transcript 238164 241889 . - . ID=BSGatlas-transcript-223;color=#B37924;Parent=BSGatlas-operon-90,BSGatlas-gene-292,BSGatlas-gene-291,BSGatlas-gene-290,BSGatlas-gene-289;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-165 basu168 BSGatlas exon 238164 241889 . - . ID=BSGatlas-transcript-223_exon;Parent=BSGatlas-transcript-223 basu168 BSGatlas transcript 238164 238569 . - . ID=BSGatlas-transcript-222;color=#B37924;Parent=BSGatlas-operon-90,BSGatlas-gene-290,BSGatlas-gene-289;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-164 basu168 BSGatlas exon 238164 238569 . - . ID=BSGatlas-transcript-222_exon;Parent=BSGatlas-transcript-222 basu168 BSGatlas gene 238164 238448 . - . ID=BSGatlas-gene-289;color=#3474B3;Name=ybfEc;locus_tag=BSU02180,BSU_02180;Parent=BSGatlas-operon-90 basu168 BSGatlas CDS 238164 238448 . - 0 ID=BSGatlas-gene-289_transcribed;color=#3474B3;Name=ybfEc;Parent=BSGatlas-transcript-222,BSGatlas-transcript-223;comment="conserved protein of unknown function(C-terminal end)";synonyms="ybfE";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-289 basu168 BSGatlas terminator 238195 238239 . - . ID=BSGatlas-terminator-109;Parent=BSGatlas-transcript-222,BSGatlas-transcript-223;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas gene 238354 238476 . - . ID=BSGatlas-gene-290;color=#3474B3;Name=ybfEn;locus_tag=BSU_02181;Parent=BSGatlas-operon-90 basu168 BSGatlas CDS 238354 238476 . - 0 ID=BSGatlas-gene-290_transcribed;color=#3474B3;Name=ybfEn;Parent=BSGatlas-transcript-222,BSGatlas-transcript-223;comment="conserved protein of unknown function YbfE(N-terminal fragment)";derives_from=BSGatlas-gene-290 basu168 BSGatlas UTR 238477 238643 . - . ID=BSGatlas-internal_UTR-107;Parent=BSGatlas-transcript-223;comment="internal_UTR" basu168 BSGatlas UTR 238477 238569 . - . ID=BSGatlas-5'UTR-123;Parent=BSGatlas-transcript-222;comment="5'UTR" basu168 BSGatlas TSS 238569 238569 . - . ID=BSGatlas-TSS-164;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 238644 239555 . - . ID=BSGatlas-gene-291;color=#3474B3;Name=ybfF;locus_tag=BSU02190,BSU_02190;Parent=BSGatlas-operon-90 basu168 BSGatlas CDS 238644 239555 . - 0 ID=BSGatlas-gene-291_transcribed;color=#3474B3;Name=ybfF;Parent=BSGatlas-transcript-223;comment="conserved protein of unknown function";synonyms="ybfF";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-291 basu168 BSGatlas UTR 239556 239643 . - . ID=BSGatlas-internal_UTR-108;Parent=BSGatlas-transcript-223;comment="internal_UTR" basu168 BSGatlas gene 239644 241842 . - . ID=BSGatlas-gene-292;color=#3474B3;Name=ybfG;locus_tag=BSU02200,BSU_02200;Parent=BSGatlas-operon-90 basu168 BSGatlas CDS 239644 241842 . - 0 ID=BSGatlas-gene-292_transcribed;color=#3474B3;Name=ybfG;Parent=BSGatlas-transcript-223;comment="putative pepdidoglycan binding protein";synonyms="ybfG";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.6 Cell wall/ other/ based on similarity,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0005975 carbohydrate metabolic process,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-292 basu168 BSGatlas UTR 241843 241889 . - . ID=BSGatlas-5'UTR-124;Parent=BSGatlas-transcript-223;comment="5'UTR" basu168 BSGatlas TSS 241889 241889 . - . ID=BSGatlas-TSS-165;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 241917 243695 . - . ID=BSGatlas-operon-91;color=#B32496 basu168 BSGatlas transcript 241917 243695 . - . ID=BSGatlas-transcript-224;color=#B37924;Parent=BSGatlas-operon-91,BSGatlas-gene-294,BSGatlas-gene-293;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-166 basu168 BSGatlas exon 241917 243695 . - . ID=BSGatlas-transcript-224_exon;Parent=BSGatlas-transcript-224 basu168 BSGatlas gene 241917 242837 . - . ID=BSGatlas-gene-293;color=#3474B3;Name=ybfH;locus_tag=BSU02210,BSU_02210;Parent=BSGatlas-operon-91 basu168 BSGatlas CDS 241917 242837 . - 0 ID=BSGatlas-gene-293_transcribed;color=#3474B3;Name=ybfH;Parent=BSGatlas-transcript-224;comment="putative permease";synonyms="ybfH";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-293 basu168 BSGatlas gene 242834 243661 . - . ID=BSGatlas-gene-294;color=#3474B3;Name=ybfI;locus_tag=BSU02220,BSU_02220;Parent=BSGatlas-operon-91 basu168 BSGatlas CDS 242834 243661 . - 0 ID=BSGatlas-gene-294_transcribed;color=#3474B3;Name=ybfI;Parent=BSGatlas-transcript-224;comment="putative transcriptional regulator (AraC/XylSfamily, cupin family)";synonyms="ybfI";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-294 basu168 BSGatlas UTR 243662 243695 . - . ID=BSGatlas-5'UTR-125;Parent=BSGatlas-transcript-224;comment="5'UTR" basu168 BSGatlas TSS 243695 243695 . - . ID=BSGatlas-TSS-166;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 243871 245095 . + . ID=BSGatlas-operon-92;color=#FF00CC basu168 BSGatlas transcript 243871 245095 . + . ID=BSGatlas-transcript-225;color=#FF9900;Parent=BSGatlas-operon-92,BSGatlas-gene-295;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-167 basu168 BSGatlas exon 243871 245095 . + . ID=BSGatlas-transcript-225_exon;Parent=BSGatlas-transcript-225 basu168 BSGatlas UTR 243871 243891 . + . ID=BSGatlas-5'UTR-126;Parent=BSGatlas-transcript-225;comment="5'UTR" basu168 BSGatlas TSS 243871 243871 . + . ID=BSGatlas-TSS-167;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7496533" basu168 BSGatlas gene 243892 245046 . + . ID=BSGatlas-gene-295;color=#1E90FF;Name=purT;locus_tag=BSU02230,BSU_02230;Parent=BSGatlas-operon-92 basu168 BSGatlas CDS 243892 245046 . + 0 ID=BSGatlas-gene-295_transcribed;color=#1E90FF;Name=purT;Parent=BSGatlas-transcript-225;comment="phosphoribosylglycinamide formyltransferase 2";synonyms="purT";subtiwiki_category="SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.2 Biosynthesis/ acquisition of nucleotides,SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides";ec="2.1.2.-,EC-2.1.2";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0003824 catalytic activity,GO:0004644 phosphoribosylglycinamide formyltransferase activity,GO:0005524 ATP binding,GO:0006164 purine nucleotide biosynthetic process,GO:0006189 'de novo' IMP biosynthetic process,GO:0008152 metabolic process,GO:0009152 purine ribonucleotide biosynthetic process,GO:0016740 transferase activity,GO:0043815 phosphoribosylglycinamide formyltransferase 2 activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-295 basu168 BSGatlas terminator 245042 245095 . + . ID=BSGatlas-terminator-110;Parent=BSGatlas-transcript-225;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.9[kcal/mol]" basu168 BSGatlas UTR 245047 245095 . + . ID=BSGatlas-3'UTR-66;Parent=BSGatlas-transcript-225;comment="3'UTR" basu168 BSGatlas operon 245121 246492 . + . ID=BSGatlas-operon-93;color=#FF00CC basu168 BSGatlas transcript 245121 246492 . + . ID=BSGatlas-transcript-227;color=#FF9900;Parent=BSGatlas-operon-93,BSGatlas-gene-296,BSGatlas-gene-297;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-168 basu168 BSGatlas exon 245121 246492 . + . ID=BSGatlas-transcript-227_exon;Parent=BSGatlas-transcript-227 basu168 BSGatlas transcript 245121 246131 . + . ID=BSGatlas-transcript-226;color=#FF9900;Parent=BSGatlas-operon-93,BSGatlas-gene-296;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-168 basu168 BSGatlas exon 245121 246131 . + . ID=BSGatlas-transcript-226_exon;Parent=BSGatlas-transcript-226 basu168 BSGatlas UTR 245121 245189 . + . ID=BSGatlas-5'UTR-127;Parent=BSGatlas-transcript-226,BSGatlas-transcript-227;comment="5'UTR" basu168 BSGatlas TSS 245121 245121 . + . ID=BSGatlas-TSS-168;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 245183 245183 . + . ID=BSGatlas-TSS-169;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 245190 246492 . + . ID=BSGatlas-transcript-229;color=#FF9900;Parent=BSGatlas-operon-93,BSGatlas-gene-296,BSGatlas-gene-297;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-169 basu168 BSGatlas exon 245190 246492 . + . ID=BSGatlas-transcript-229_exon;Parent=BSGatlas-transcript-229 basu168 BSGatlas gene 245190 246131 . + . ID=BSGatlas-gene-296;color=#1E90FF;Name=mpr;locus_tag=BSU02240,BSU_02240;Parent=BSGatlas-operon-93 basu168 BSGatlas transcript 245190 246131 . + . ID=BSGatlas-transcript-228;color=#FF9900;Parent=BSGatlas-operon-93,BSGatlas-gene-296;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-169 basu168 BSGatlas CDS 245190 246131 . + 0 ID=BSGatlas-gene-296_transcribed;color=#1E90FF;Name=mpr;Parent=BSGatlas-transcript-226,BSGatlas-transcript-227,BSGatlas-transcript-228,BSGatlas-transcript-229;comment="extracellular glutamyl-endopeptidase";synonyms="mpr";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.5 Utilization of proteins,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.2 Extracellular feeding proteases,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.4.21.-";go="GO:0003824 catalytic activity,GO:0004252 serine-type endopeptidase activity,GO:0005576 extracellular region,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008236 serine-type peptidase activity,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-296 basu168 BSGatlas exon 245190 246131 . + . ID=BSGatlas-transcript-228_exon;Parent=BSGatlas-transcript-228 basu168 BSGatlas gene 246094 246492 . + . ID=BSGatlas-gene-297;color=#1E90FF;Name=ybfJ;locus_tag=BSU02250,BSU_02250;Parent=BSGatlas-operon-93 basu168 BSGatlas CDS 246094 246492 . + 0 ID=BSGatlas-gene-297_transcribed;color=#1E90FF;Name=ybfJ;Parent=BSGatlas-transcript-227,BSGatlas-transcript-229;comment="putative lipoprotein";synonyms="ybfJ";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-297 basu168 BSGatlas TSS 246196 246196 . - . ID=BSGatlas-TSS-170;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 246457 246501 . + . ID=BSGatlas-terminator-111;Parent=BSGatlas-transcript-227,BSGatlas-transcript-229;comment="Based on: Nicolas et al. downshift, Energy: -15.4[kcal/mol]" basu168 BSGatlas operon 246583 249585 . + . ID=BSGatlas-operon-94;color=#FF00CC basu168 BSGatlas transcript 246583 249585 . + . ID=BSGatlas-transcript-231;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-298,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-171 basu168 BSGatlas exon 246583 249585 . + . ID=BSGatlas-transcript-231_exon;Parent=BSGatlas-transcript-231 basu168 BSGatlas transcript 246583 249540 . + . ID=BSGatlas-transcript-230;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-298,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-171 basu168 BSGatlas exon 246583 249540 . + . ID=BSGatlas-transcript-230_exon;Parent=BSGatlas-transcript-230 basu168 BSGatlas UTR 246583 246657 . + . ID=BSGatlas-5'UTR-128;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231;comment="5'UTR" basu168 BSGatlas TSS 246583 246583 . + . ID=BSGatlas-TSS-171;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 246658 249585 . + . ID=BSGatlas-transcript-233;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-298,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-172 basu168 BSGatlas exon 246658 249585 . + . ID=BSGatlas-transcript-233_exon;Parent=BSGatlas-transcript-233 basu168 BSGatlas transcript 246658 249540 . + . ID=BSGatlas-transcript-232;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-298,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-172 basu168 BSGatlas exon 246658 249540 . + . ID=BSGatlas-transcript-232_exon;Parent=BSGatlas-transcript-232 basu168 BSGatlas gene 246658 247548 . + . ID=BSGatlas-gene-298;color=#1E90FF;Name=cesB;locus_tag=BSU02260,BSU_02260;Parent=BSGatlas-operon-94 basu168 BSGatlas CDS 246658 247548 . + 0 ID=BSGatlas-gene-298_transcribed;color=#1E90FF;Name=cesB;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231,BSGatlas-transcript-232,BSGatlas-transcript-233;comment="enantioselective carboxylesterase";synonyms="cesB,ybfK";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.4 Utilization of lipids/ other";ec="3.1.1.1,EC-3.1.1.1";go="GO:0005737 cytoplasm,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0052689 carboxylic ester hydrolase activity";derives_from=BSGatlas-gene-298 basu168 BSGatlas TSS 246908 246908 . + . ID=BSGatlas-TSS-172;color=#FF0000;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 247549 247743 . + . ID=BSGatlas-internal_UTR-109;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231,BSGatlas-transcript-232,BSGatlas-transcript-233;comment="internal_UTR" basu168 BSGatlas transcript 247711 249585 . + . ID=BSGatlas-transcript-235;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-173 basu168 BSGatlas exon 247711 249585 . + . ID=BSGatlas-transcript-235_exon;Parent=BSGatlas-transcript-235 basu168 BSGatlas transcript 247711 249540 . + . ID=BSGatlas-transcript-234;color=#FF9900;Parent=BSGatlas-operon-94,BSGatlas-gene-299,BSGatlas-gene-300,BSGatlas-gene-301;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-173 basu168 BSGatlas exon 247711 249540 . + . ID=BSGatlas-transcript-234_exon;Parent=BSGatlas-transcript-234 basu168 BSGatlas UTR 247711 247743 . + . ID=BSGatlas-5'UTR-129;Parent=BSGatlas-transcript-234,BSGatlas-transcript-235;comment="5'UTR" basu168 BSGatlas TSS 247711 247711 . + . ID=BSGatlas-TSS-173;color=#FF0000;comment="Simga: X, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 14762009,17962296" basu168 BSGatlas gene 247744 248277 . + . ID=BSGatlas-gene-299;color=#1E90FF;Name=pssA;locus_tag=BSU02270,BSU_02270;Parent=BSGatlas-operon-94 basu168 BSGatlas CDS 247744 248277 . + 0 ID=BSGatlas-gene-299_transcribed;color=#1E90FF;Name=pssA;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231,BSGatlas-transcript-232,BSGatlas-transcript-233,BSGatlas-transcript-234,BSGatlas-transcript-235;comment="phosphatidylserine synthase";synonyms="pss,pssA";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.2 Biosynthesis of phospholipids,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="2.7.8.8,EC-2.7.8.8";go="GO:0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity,GO:0005886 plasma membrane,GO:0006629 lipid metabolic process,GO:0008654 phospholipid biosynthetic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016740 transferase activity,GO:0016780 phosphotransferase activity, for other substituted phosphate groups";derives_from=BSGatlas-gene-299 basu168 BSGatlas gene 248268 248756 . + . ID=BSGatlas-gene-300;color=#1E90FF;Name=ybfM;locus_tag=BSU02280,BSU_02280;Parent=BSGatlas-operon-94 basu168 BSGatlas CDS 248268 248756 . + 0 ID=BSGatlas-gene-300_transcribed;color=#1E90FF;Name=ybfM;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231,BSGatlas-transcript-232,BSGatlas-transcript-233,BSGatlas-transcript-234,BSGatlas-transcript-235;comment="putative membrane phosphatase";synonyms="ybfM";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.6 Poorly characterized/ putative enzymes";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-300 basu168 BSGatlas gene 248749 249540 . + . ID=BSGatlas-gene-301;color=#1E90FF;Name=psd;locus_tag=BSU02290,BSU_02290;Parent=BSGatlas-operon-94 basu168 BSGatlas CDS 248749 249540 . + 0 ID=BSGatlas-gene-301_transcribed;color=#1E90FF;Name=psd;Parent=BSGatlas-transcript-230,BSGatlas-transcript-231,BSGatlas-transcript-232,BSGatlas-transcript-233,BSGatlas-transcript-234,BSGatlas-transcript-235;comment="phosphatidylserine decarboxylase; 32 kDaprecursor processed into a 29 kDa protein";synonyms="psd";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.2 Biosynthesis of phospholipids,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="4.1.1.65,EC-4.1.1.65";go="GO:0004609 phosphatidylserine decarboxylase activity,GO:0005886 plasma membrane,GO:0006629 lipid metabolic process,GO:0006646 phosphatidylethanolamine biosynthetic process,GO:0008654 phospholipid biosynthetic process,GO:0016020 membrane,GO:0016829 lyase activity,GO:0016831 carboxy-lyase activity";derives_from=BSGatlas-gene-301 basu168 BSGatlas terminator 249493 249537 . + . ID=BSGatlas-terminator-112;Parent=BSGatlas-transcript-230,BSGatlas-transcript-232,BSGatlas-transcript-234;comment="Based on: Nicolas et al. downshift, Energy: -8[kcal/mol]" basu168 BSGatlas terminator 249539 249585 . + . ID=BSGatlas-terminator-113;Parent=BSGatlas-transcript-231,BSGatlas-transcript-233,BSGatlas-transcript-235;comment="Based on: BsubCyc,DBTBS, Energy: -13.1[kcal/mol]" basu168 BSGatlas UTR 249541 249585 . + . ID=BSGatlas-3'UTR-67;Parent=BSGatlas-transcript-231,BSGatlas-transcript-233,BSGatlas-transcript-235;comment="3'UTR" basu168 BSGatlas gene 249595 249873 . + . ID=BSGatlas-gene-302;color=#1E90FF;Name=ybfN;locus_tag=BSU02300,BSU_02300 basu168 BSGatlas CDS 249595 249873 . + 0 ID=BSGatlas-gene-302_transcribed;color=#1E90FF;Name=ybfN;comment="conserved protein of unknown function";synonyms="ybfN";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-302 basu168 BSGatlas operon 249934 253501 . + . ID=BSGatlas-operon-95;color=#FF00CC basu168 BSGatlas transcript 249934 253501 . + . ID=BSGatlas-transcript-238;color=#FF9900;Parent=BSGatlas-operon-95,BSGatlas-gene-303,BSGatlas-gene-304,BSGatlas-gene-305;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-174 basu168 BSGatlas exon 249934 253501 . + . ID=BSGatlas-transcript-238_exon;Parent=BSGatlas-transcript-238 basu168 BSGatlas transcript 249934 252314 . + . ID=BSGatlas-transcript-237;color=#FF9900;Parent=BSGatlas-operon-95,BSGatlas-gene-303,BSGatlas-gene-304;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-174 basu168 BSGatlas exon 249934 252314 . + . ID=BSGatlas-transcript-237_exon;Parent=BSGatlas-transcript-237 basu168 BSGatlas transcript 249934 251361 . + . ID=BSGatlas-transcript-236;color=#FF9900;Parent=BSGatlas-operon-95,BSGatlas-gene-303;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-174 basu168 BSGatlas exon 249934 251361 . + . ID=BSGatlas-transcript-236_exon;Parent=BSGatlas-transcript-236 basu168 BSGatlas UTR 249934 249978 . + . ID=BSGatlas-5'UTR-130;Parent=BSGatlas-transcript-236,BSGatlas-transcript-237,BSGatlas-transcript-238;comment="5'UTR" basu168 BSGatlas TSS 249934 249934 . + . ID=BSGatlas-TSS-174;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 249979 251319 . + . ID=BSGatlas-gene-303;color=#1E90FF;Name=ybfO;locus_tag=BSU02310,BSU_02310;Parent=BSGatlas-operon-95 basu168 BSGatlas CDS 249979 251319 . + 0 ID=BSGatlas-gene-303_transcribed;color=#1E90FF;Name=ybfO;Parent=BSGatlas-transcript-236,BSGatlas-transcript-237,BSGatlas-transcript-238;comment="putative exported hydrolase";synonyms="ybfO";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.11 Efp-dependent proteins,SW 6.12 Secreted proteins";ec="3.-.-.-";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-303 basu168 BSGatlas UTR 251320 251426 . + . ID=BSGatlas-internal_UTR-110;Parent=BSGatlas-transcript-237,BSGatlas-transcript-238;comment="internal_UTR" basu168 BSGatlas UTR 251320 251361 . + . ID=BSGatlas-3'UTR-68;Parent=BSGatlas-transcript-236;comment="3'UTR" basu168 BSGatlas terminator 251321 251361 . + . ID=BSGatlas-terminator-114;Parent=BSGatlas-transcript-236;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.9[kcal/mol]" basu168 BSGatlas transcript 251385 253501 . + . ID=BSGatlas-transcript-239;color=#FF9900;Parent=BSGatlas-operon-95,BSGatlas-gene-304,BSGatlas-gene-305;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-175 basu168 BSGatlas exon 251385 253501 . + . ID=BSGatlas-transcript-239_exon;Parent=BSGatlas-transcript-239 basu168 BSGatlas UTR 251385 251426 . + . ID=BSGatlas-5'UTR-131;Parent=BSGatlas-transcript-239;comment="5'UTR" basu168 BSGatlas TSS 251385 251385 . + . ID=BSGatlas-TSS-175;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 251427 252314 . + . ID=BSGatlas-gene-304;color=#1E90FF;Name=ybfP;locus_tag=BSU02320,BSU_02320;Parent=BSGatlas-operon-95 basu168 BSGatlas CDS 251427 252314 . + 0 ID=BSGatlas-gene-304_transcribed;color=#1E90FF;Name=ybfP;Parent=BSGatlas-transcript-237,BSGatlas-transcript-238,BSGatlas-transcript-239;comment="putative transcriptional regulator (AraC/XylSfamily)";synonyms="ybfP";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-304 basu168 BSGatlas UTR 252315 252513 . + . ID=BSGatlas-internal_UTR-111;Parent=BSGatlas-transcript-238,BSGatlas-transcript-239;comment="internal_UTR" basu168 BSGatlas transcript 252460 253501 . + . ID=BSGatlas-transcript-240;color=#FF9900;Parent=BSGatlas-operon-95,BSGatlas-gene-305;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-176 basu168 BSGatlas exon 252460 253501 . + . ID=BSGatlas-transcript-240_exon;Parent=BSGatlas-transcript-240 basu168 BSGatlas UTR 252460 252513 . + . ID=BSGatlas-5'UTR-132;Parent=BSGatlas-transcript-240;comment="5'UTR" basu168 BSGatlas TSS 252460 252460 . + . ID=BSGatlas-TSS-176;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 252514 253482 . + . ID=BSGatlas-gene-305;color=#1E90FF;Name=ybfQ;locus_tag=BSU02330,BSU_02330;Parent=BSGatlas-operon-95 basu168 BSGatlas CDS 252514 253482 . + 0 ID=BSGatlas-gene-305_transcribed;color=#1E90FF;Name=ybfQ;Parent=BSGatlas-transcript-238,BSGatlas-transcript-239,BSGatlas-transcript-240;comment="putative enzyme with rhodanese domain";synonyms="ybfQ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";derives_from=BSGatlas-gene-305 basu168 BSGatlas TSS 253353 253353 . - . ID=BSGatlas-TSS-177;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 253457 253501 . + . ID=BSGatlas-terminator-115;Parent=BSGatlas-transcript-238,BSGatlas-transcript-239,BSGatlas-transcript-240;comment="Based on: Nicolas et al. downshift, Energy: -7.8[kcal/mol]" basu168 BSGatlas UTR 253483 253501 . + . ID=BSGatlas-3'UTR-69;Parent=BSGatlas-transcript-238,BSGatlas-transcript-239,BSGatlas-transcript-240;comment="3'UTR" basu168 BSGatlas operon 253496 254849 . - . ID=BSGatlas-operon-96;color=#B32496 basu168 BSGatlas transcript 253496 254849 . - . ID=BSGatlas-transcript-242;color=#B37924;Parent=BSGatlas-operon-96,BSGatlas-gene-306;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-179 basu168 BSGatlas exon 253496 254849 . - . ID=BSGatlas-transcript-242_exon;Parent=BSGatlas-transcript-242 basu168 BSGatlas transcript 253496 254805 . - . ID=BSGatlas-transcript-241;color=#B37924;Parent=BSGatlas-operon-96,BSGatlas-gene-306;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-178 basu168 BSGatlas exon 253496 254805 . - . ID=BSGatlas-transcript-241_exon;Parent=BSGatlas-transcript-241 basu168 BSGatlas terminator 253496 253540 . - . ID=BSGatlas-terminator-116;Parent=BSGatlas-transcript-241,BSGatlas-transcript-242;comment="Based on: Nicolas et al. downshift, Energy: -7.5[kcal/mol]" basu168 BSGatlas UTR 253496 253517 . - . ID=BSGatlas-3'UTR-70;Parent=BSGatlas-transcript-241,BSGatlas-transcript-242;comment="3'UTR" basu168 BSGatlas gene 253518 254762 . - . ID=BSGatlas-gene-306;color=#3474B3;Name=gltP;locus_tag=BSU02340,BSU_02340;Parent=BSGatlas-operon-96 basu168 BSGatlas CDS 253518 254762 . - 0 ID=BSGatlas-gene-306_transcribed;color=#3474B3;Name=gltP;Parent=BSGatlas-transcript-241,BSGatlas-transcript-242;comment="proton/glutamate symport protein";synonyms="gltP";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.2 Other amino acid transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006835 dicarboxylic acid transport,GO:0015293 symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0017153 sodium:dicarboxylate symporter activity,GO:0035725 sodium ion transmembrane transport,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-306 basu168 BSGatlas UTR 254763 254849 . - . ID=BSGatlas-5'UTR-134;Parent=BSGatlas-transcript-242;comment="5'UTR" basu168 BSGatlas UTR 254763 254805 . - . ID=BSGatlas-5'UTR-133;Parent=BSGatlas-transcript-241;comment="5'UTR" basu168 BSGatlas TSS 254805 254805 . - . ID=BSGatlas-TSS-178;color=#B32424;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 254849 254849 . - . ID=BSGatlas-TSS-179;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 254901 254945 . - . ID=BSGatlas-terminator-117;Parent=BSGatlas-transcript-243,BSGatlas-transcript-244;comment="Based on: Nicolas et al. downshift, Energy: -12.1[kcal/mol]" basu168 BSGatlas operon 254907 258596 . - . ID=BSGatlas-operon-97;color=#B32496 basu168 BSGatlas transcript 254907 258596 . - . ID=BSGatlas-transcript-244;color=#B37924;Parent=BSGatlas-operon-97,BSGatlas-gene-308,BSGatlas-gene-307;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-185 basu168 BSGatlas exon 254907 258596 . - . ID=BSGatlas-transcript-244_exon;Parent=BSGatlas-transcript-244 basu168 BSGatlas transcript 254907 257635 . - . ID=BSGatlas-transcript-243;color=#B37924;Parent=BSGatlas-operon-97,BSGatlas-gene-308,BSGatlas-gene-307;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-182 basu168 BSGatlas exon 254907 257635 . - . ID=BSGatlas-transcript-243_exon;Parent=BSGatlas-transcript-243 basu168 BSGatlas gene 254907 256802 . - . ID=BSGatlas-gene-307;color=#3474B3;Name=gamP;locus_tag=BSU02350,BSU_02350;Parent=BSGatlas-operon-97 basu168 BSGatlas CDS 254907 256802 . - 0 ID=BSGatlas-gene-307_transcribed;color=#3474B3;Name=gamP;Parent=BSGatlas-transcript-243,BSGatlas-transcript-244;comment="phosphotransferase system (PTS)glucosamine-specific enzyme IICBA component";synonyms="gamP,ybfS,yzfA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.3 Phosphorylation on a Cys residue,SW 6.4.4 Phosphorylation on a His residue";ec="2.7.1.193,2.7.1.69";go="GO:0005351 carbohydrate:proton symporter activity,GO:0005355 glucose transmembrane transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015758 NA,GO:0015992 NA,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport,GO:0035428 NA";derives_from=BSGatlas-gene-307 basu168 BSGatlas operon 256685 258849 . + . ID=BSGatlas-operon-98;color=#FF00CC basu168 BSGatlas transcript 256685 258849 . + . ID=BSGatlas-transcript-245;color=#FF9900;Parent=BSGatlas-operon-98,BSGatlas-gene-309,BSGatlas-gene-310;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-180 basu168 BSGatlas exon 256685 258849 . + . ID=BSGatlas-transcript-245_exon;Parent=BSGatlas-transcript-245 basu168 BSGatlas UTR 256685 257790 . + . ID=BSGatlas-5'UTR-135;Parent=BSGatlas-transcript-245;comment="5'UTR" basu168 BSGatlas TSS 256685 256685 . + . ID=BSGatlas-TSS-180;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 256803 256822 . - . ID=BSGatlas-internal_UTR-112;Parent=BSGatlas-transcript-243,BSGatlas-transcript-244;comment="internal_UTR" basu168 BSGatlas gene 256823 257572 . - . ID=BSGatlas-gene-308;color=#3474B3;Name=gamA;locus_tag=BSU02360,BSU_02360;Parent=BSGatlas-operon-97 basu168 BSGatlas CDS 256823 257572 . - 0 ID=BSGatlas-gene-308_transcribed;color=#3474B3;Name=gamA;Parent=BSGatlas-transcript-243,BSGatlas-transcript-244;comment="glucosamine-6-phosphate deaminase";synonyms="gamA,nagBB,ybfT";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars";ec="3.5.99.6,EC-3.5.99.6";go="GO:0004342 glucosamine-6-phosphate deaminase activity,GO:0005975 carbohydrate metabolic process,GO:0006043 glucosamine catabolic process,GO:0006044 N-acetylglucosamine metabolic process,GO:0006046 N-acetylglucosamine catabolic process,GO:0016787 hydrolase activity,GO:0019262 N-acetylneuraminate catabolic process";derives_from=BSGatlas-gene-308 basu168 BSGatlas transcript 257545 258849 . + . ID=BSGatlas-transcript-246;color=#FF9900;Parent=BSGatlas-operon-98,BSGatlas-gene-309,BSGatlas-gene-310;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-181 basu168 BSGatlas exon 257545 258849 . + . ID=BSGatlas-transcript-246_exon;Parent=BSGatlas-transcript-246 basu168 BSGatlas UTR 257545 257790 . + . ID=BSGatlas-5'UTR-136;Parent=BSGatlas-transcript-246;comment="5'UTR" basu168 BSGatlas TSS 257545 257545 . + . ID=BSGatlas-TSS-181;color=#FF0000;comment="Simga: ?, Resolution: 33, Based on: Nicolas et al 5' UTR start, PubMed: " basu168 BSGatlas UTR 257573 258596 . - . ID=BSGatlas-5'UTR-138;Parent=BSGatlas-transcript-244;comment="5'UTR" basu168 BSGatlas UTR 257573 257635 . - . ID=BSGatlas-5'UTR-137;Parent=BSGatlas-transcript-243;comment="5'UTR" basu168 BSGatlas TSS 257635 257635 . - . ID=BSGatlas-TSS-182;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 23667565" basu168 BSGatlas transcript 257750 258849 . + . ID=BSGatlas-transcript-247;color=#FF9900;Parent=BSGatlas-operon-98,BSGatlas-gene-309,BSGatlas-gene-310;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-183 basu168 BSGatlas exon 257750 258849 . + . ID=BSGatlas-transcript-247_exon;Parent=BSGatlas-transcript-247 basu168 BSGatlas UTR 257750 257790 . + . ID=BSGatlas-5'UTR-139;Parent=BSGatlas-transcript-247;comment="5'UTR" basu168 BSGatlas TSS 257750 257750 . + . ID=BSGatlas-TSS-183;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 23667565" basu168 BSGatlas gene 257791 258498 . + . ID=BSGatlas-gene-309;color=#1E90FF;Name=gamR;locus_tag=BSU02370,BSU_02370;Parent=BSGatlas-operon-98 basu168 BSGatlas CDS 257791 258498 . + 0 ID=BSGatlas-gene-309_transcribed;color=#1E90FF;Name=gamR;Parent=BSGatlas-transcript-245,BSGatlas-transcript-246,BSGatlas-transcript-247;comment="transcriptional regulator-GlcN6P (GntR family)";synonyms="gamR,ybgA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.3 Utilization of cell wall components,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.17 Utilization of amino sugars,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.3 Utilization of amino sugars,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0045892 negative regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-309 basu168 BSGatlas transcript 258492 258849 . + . ID=BSGatlas-transcript-248;color=#FF9900;Parent=BSGatlas-operon-98,BSGatlas-gene-310;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-184 basu168 BSGatlas exon 258492 258849 . + . ID=BSGatlas-transcript-248_exon;Parent=BSGatlas-transcript-248 basu168 BSGatlas UTR 258492 258531 . + . ID=BSGatlas-5'UTR-140;Parent=BSGatlas-transcript-248;comment="5'UTR" basu168 BSGatlas TSS 258492 258492 . + . ID=BSGatlas-TSS-184;color=#FF0000;comment="Simga: Y, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12897008,17962296" basu168 BSGatlas UTR 258499 258531 . + . ID=BSGatlas-internal_UTR-113;Parent=BSGatlas-transcript-245,BSGatlas-transcript-246,BSGatlas-transcript-247;comment="internal_UTR" basu168 BSGatlas gene 258532 258807 . + . ID=BSGatlas-gene-310;color=#1E90FF;Name=ybgB;locus_tag=BSU02380,BSU_02380;Parent=BSGatlas-operon-98 basu168 BSGatlas CDS 258532 258807 . + 0 ID=BSGatlas-gene-310_transcribed;color=#1E90FF;Name=ybgB;Parent=BSGatlas-transcript-245,BSGatlas-transcript-246,BSGatlas-transcript-247,BSGatlas-transcript-248;comment="conserved protein of unknown function (B.subtilis-specific)";synonyms="ybgB";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.18 Toxins, antitoxins and immunity against toxins/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-310 basu168 BSGatlas TSS 258596 258596 . - . ID=BSGatlas-TSS-185;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 258808 258849 . + . ID=BSGatlas-3'UTR-71;Parent=BSGatlas-transcript-245,BSGatlas-transcript-246,BSGatlas-transcript-247,BSGatlas-transcript-248;comment="3'UTR" basu168 BSGatlas terminator 258809 258849 . + . ID=BSGatlas-terminator-118;Parent=BSGatlas-transcript-245,BSGatlas-transcript-246,BSGatlas-transcript-247,BSGatlas-transcript-248;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas operon 258889 260134 . + . ID=BSGatlas-operon-99;color=#FF00CC basu168 BSGatlas transcript 258889 260134 . + . ID=BSGatlas-transcript-249;color=#FF9900;Parent=BSGatlas-operon-99,BSGatlas-gene-311;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-186 basu168 BSGatlas exon 258889 260134 . + . ID=BSGatlas-transcript-249_exon;Parent=BSGatlas-transcript-249 basu168 BSGatlas UTR 258889 259015 . + . ID=BSGatlas-5'UTR-141;Parent=BSGatlas-transcript-249;comment="5'UTR" basu168 BSGatlas TSS 258889 258889 . + . ID=BSGatlas-TSS-186;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,21699902" basu168 BSGatlas gene 259016 260086 . + . ID=BSGatlas-gene-311;color=#1E90FF;Name=ilvE;locus_tag=BSU02390,BSU_02390;Parent=BSGatlas-operon-99 basu168 BSGatlas CDS 259016 260086 . + 0 ID=BSGatlas-gene-311_transcribed;color=#1E90FF;Name=ilvE;Parent=BSGatlas-transcript-249;comment="isoleucine-valine aminotransferase / aromaticamino acid aminotransferase";synonyms="mtnF,ybgE";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.12 Biosynthesis/ acquisition of branched-chain amino acids";ec="2.6.1.42,EC-2.6.1.6;EC-2.6.1.42;EC-2.6.1.42";go="GO:0003824 catalytic activity,GO:0004084 branched-chain-amino-acid transaminase activity,GO:0008152 metabolic process,GO:0008483 transaminase activity,GO:0008652 cellular amino acid biosynthetic process,GO:0009081 branched-chain amino acid metabolic process,GO:0009082 branched-chain amino acid biosynthetic process,GO:0009097 isoleucine biosynthetic process,GO:0009098 leucine biosynthetic process,GO:0009099 valine biosynthetic process,GO:0016740 transferase activity,GO:0052654 L-leucine transaminase activity,GO:0052655 L-valine transaminase activity,GO:0052656 L-isoleucine transaminase activity";derives_from=BSGatlas-gene-311 basu168 BSGatlas UTR 260087 260134 . + . ID=BSGatlas-3'UTR-72;Parent=BSGatlas-transcript-249;comment="3'UTR" basu168 BSGatlas terminator 260093 260134 . + . ID=BSGatlas-terminator-119;Parent=BSGatlas-transcript-249;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.4[kcal/mol]" basu168 BSGatlas terminator 260118 260162 . - . ID=BSGatlas-terminator-120;Parent=BSGatlas-transcript-250,BSGatlas-transcript-251;comment="Based on: Nicolas et al. downshift, Energy: -9.4[kcal/mol]" basu168 BSGatlas operon 260123 262658 . - . ID=BSGatlas-operon-100;color=#B32496 basu168 BSGatlas transcript 260123 262658 . - . ID=BSGatlas-transcript-251;color=#B37924;Parent=BSGatlas-operon-100,BSGatlas-gene-313,BSGatlas-gene-312;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-188 basu168 BSGatlas exon 260123 262658 . - . ID=BSGatlas-transcript-251_exon;Parent=BSGatlas-transcript-251 basu168 BSGatlas transcript 260123 261647 . - . ID=BSGatlas-transcript-250;color=#B37924;Parent=BSGatlas-operon-100,BSGatlas-gene-312;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-187 basu168 BSGatlas exon 260123 261647 . - . ID=BSGatlas-transcript-250_exon;Parent=BSGatlas-transcript-250 basu168 BSGatlas gene 260123 261535 . - . ID=BSGatlas-gene-312;color=#3474B3;Name=ybgF;locus_tag=BSU02400,BSU_02400;Parent=BSGatlas-operon-100 basu168 BSGatlas CDS 260123 261535 . - 0 ID=BSGatlas-gene-312_transcribed;color=#3474B3;Name=ybgF;Parent=BSGatlas-transcript-250,BSGatlas-transcript-251;comment="putative aminoacid permease";synonyms="hutM,ybgF";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.2 Other amino acid transporters,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.14 Biosynthesis/ acquisition of histidine,SW 2.3.2 Utilization of amino acids,SW 2.3.2.5 Utilization of histidine,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-312 basu168 BSGatlas UTR 261536 261655 . - . ID=BSGatlas-internal_UTR-114;Parent=BSGatlas-transcript-251;comment="internal_UTR" basu168 BSGatlas UTR 261536 261647 . - . ID=BSGatlas-5'UTR-142;Parent=BSGatlas-transcript-250;comment="5'UTR" basu168 BSGatlas transcript 261568 262658 . - . ID=BSGatlas-transcript-252;color=#B37924;Parent=BSGatlas-operon-100,BSGatlas-gene-313;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-188 basu168 BSGatlas exon 261568 262658 . - . ID=BSGatlas-transcript-252_exon;Parent=BSGatlas-transcript-252 basu168 BSGatlas UTR 261568 261655 . - . ID=BSGatlas-3'UTR-73;Parent=BSGatlas-transcript-252;comment="3'UTR" basu168 BSGatlas terminator 261568 261615 . - . ID=BSGatlas-terminator-121;Parent=BSGatlas-transcript-252;comment="Based on: BsubCyc,DBTBS, Energy: -15.9[kcal/mol]" basu168 BSGatlas TSS 261647 261647 . - . ID=BSGatlas-TSS-187;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 261656 262603 . - . ID=BSGatlas-gene-313;color=#3474B3;Name=ybgG;locus_tag=BSU02410,BSU_02410;Parent=BSGatlas-operon-100 basu168 BSGatlas CDS 261656 262603 . - 0 ID=BSGatlas-gene-313_transcribed;color=#3474B3;Name=ybgG;Parent=BSGatlas-transcript-251,BSGatlas-transcript-252;comment="homocysteine methylase using (R,S)AdoMet";synonyms="ybgG";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.11 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity";ec="2.1.1.10,EC-2.1.1;EC-2.1.1.10";go="GO:0008168 methyltransferase activity,GO:0008652 cellular amino acid biosynthetic process,GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity,GO:0009086 methionine biosynthetic process,GO:0016740 transferase activity,GO:0032259 methylation,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-313 basu168 BSGatlas UTR 262604 262658 . - . ID=BSGatlas-5'UTR-143;Parent=BSGatlas-transcript-251,BSGatlas-transcript-252;comment="5'UTR" basu168 BSGatlas TSS 262658 262658 . - . ID=BSGatlas-TSS-188;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 262684 265269 . - . ID=BSGatlas-operon-101;color=#B32496 basu168 BSGatlas transcript 262684 265269 . - . ID=BSGatlas-transcript-253;color=#B37924;Parent=BSGatlas-operon-101,BSGatlas-gene-315,BSGatlas-gene-314;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-189 basu168 BSGatlas exon 262684 265269 . - . ID=BSGatlas-transcript-253_exon;Parent=BSGatlas-transcript-253 basu168 BSGatlas terminator 262684 262736 . - . ID=BSGatlas-terminator-122;Parent=BSGatlas-transcript-253;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.5[kcal/mol]" basu168 BSGatlas UTR 262684 262731 . - . ID=BSGatlas-3'UTR-74;Parent=BSGatlas-transcript-253;comment="3'UTR" basu168 BSGatlas gene 262732 264168 . - . ID=BSGatlas-gene-314;color=#3474B3;Name=glnT;locus_tag=BSU02420,BSU_02420;Parent=BSGatlas-operon-101 basu168 BSGatlas CDS 262732 264168 . - 0 ID=BSGatlas-gene-314_transcribed;color=#3474B3;Name=glnT;Parent=BSGatlas-transcript-253;comment="glutamine transporter";synonyms="glnT,ybgH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.1 Solute:sodium symporter family,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation,SW 2.3.2 Utilization of amino acids,SW 2.3.2.1 Utilization of glutamine/ glutamate,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006814 sodium ion transport,GO:0006865 amino acid transport,GO:0015293 symporter activity,GO:0015655 alanine:sodium symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0032328 alanine transport,GO:0035725 sodium ion transmembrane transport,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-314 basu168 BSGatlas UTR 264169 264190 . - . ID=BSGatlas-internal_UTR-115;Parent=BSGatlas-transcript-253;comment="internal_UTR" basu168 BSGatlas gene 264191 265174 . - . ID=BSGatlas-gene-315;color=#3474B3;Name=glsA;locus_tag=BSU02430,BSU_02430;Parent=BSGatlas-operon-101 basu168 BSGatlas CDS 264191 265174 . - 0 ID=BSGatlas-gene-315_transcribed;color=#3474B3;Name=glsA;Parent=BSGatlas-transcript-253;comment="glutaminase";synonyms="glsA,ybgJ";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.1 Utilization of glutamine/ glutamate";ec="3.5.1.2,EC-3.5.1.38;EC-3.5.1.2";go="GO:0004359 glutaminase activity,GO:0006541 glutamine metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-315 basu168 BSGatlas UTR 265175 265269 . - . ID=BSGatlas-5'UTR-144;Parent=BSGatlas-transcript-253;comment="5'UTR" basu168 BSGatlas TSS 265269 265269 . - . ID=BSGatlas-TSS-189;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 15995196,17962296" basu168 BSGatlas operon 265279 267663 . + . ID=BSGatlas-operon-102;color=#FF00CC basu168 BSGatlas transcript 265279 267663 . + . ID=BSGatlas-transcript-254;color=#FF9900;Parent=BSGatlas-operon-102,BSGatlas-gene-316,BSGatlas-gene-317;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-190 basu168 BSGatlas exon 265279 267663 . + . ID=BSGatlas-transcript-254_exon;Parent=BSGatlas-transcript-254 basu168 BSGatlas UTR 265279 265475 . + . ID=BSGatlas-5'UTR-145;Parent=BSGatlas-transcript-254;comment="5'UTR" basu168 BSGatlas TSS 265279 265279 . + . ID=BSGatlas-TSS-190;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 265476 266708 . + . ID=BSGatlas-gene-316;color=#1E90FF;Name=glnJ;locus_tag=BSU02440,BSU_02440;Parent=BSGatlas-operon-102 basu168 BSGatlas CDS 265476 266708 . + 0 ID=BSGatlas-gene-316_transcribed;color=#1E90FF;Name=glnJ;Parent=BSGatlas-transcript-254;comment="two-component sensor histidine kinase [GlnL] forglutamine degradation";synonyms="glnK,ycbA,yzgA";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation,SW 2.3.2 Utilization of amino acids,SW 2.3.2.1 Utilization of glutamine/ glutamate,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";ec="2.7.13.3";go="GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0005515 protein binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups,GO:0018106 peptidyl-histidine phosphorylation";derives_from=BSGatlas-gene-316 basu168 BSGatlas gene 266719 267663 . + . ID=BSGatlas-gene-317;color=#1E90FF;Name=glnL;locus_tag=BSU02450,BSU_02450;Parent=BSGatlas-operon-102 basu168 BSGatlas CDS 266719 267663 . + 0 ID=BSGatlas-gene-317_transcribed;color=#1E90FF;Name=glnL;Parent=BSGatlas-transcript-254;comment="two-component response regulator [GlnJ] forglutamine utilisation";synonyms="glnL,ycbB,yzgB";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation,SW 2.3.2 Utilization of amino acids,SW 2.3.2.1 Utilization of glutamine/ glutamate,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-317 basu168 BSGatlas terminator 267618 267662 . + . ID=BSGatlas-terminator-123;Parent=BSGatlas-transcript-254;comment="Based on: Nicolas et al. downshift, Energy: -6.2[kcal/mol]" basu168 BSGatlas operon 267772 276758 . + . ID=BSGatlas-operon-103;color=#FF00CC basu168 BSGatlas transcript 267772 276758 . + . ID=BSGatlas-transcript-256;color=#FF9900;Parent=BSGatlas-operon-103,BSGatlas-gene-318,BSGatlas-gene-319,BSGatlas-gene-320,BSGatlas-gene-321,BSGatlas-gene-322,BSGatlas-gene-323,BSGatlas-gene-324,BSGatlas-gene-325;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-191 basu168 BSGatlas exon 267772 276758 . + . ID=BSGatlas-transcript-256_exon;Parent=BSGatlas-transcript-256 basu168 BSGatlas transcript 267772 273954 . + . ID=BSGatlas-transcript-255;color=#FF9900;Parent=BSGatlas-operon-103,BSGatlas-gene-318,BSGatlas-gene-319,BSGatlas-gene-320,BSGatlas-gene-321,BSGatlas-gene-322;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-191 basu168 BSGatlas exon 267772 273954 . + . ID=BSGatlas-transcript-255_exon;Parent=BSGatlas-transcript-255 basu168 BSGatlas UTR 267772 267889 . + . ID=BSGatlas-5'UTR-146;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="5'UTR" basu168 BSGatlas TSS 267772 267772 . + . ID=BSGatlas-TSS-191;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 267890 268816 . + . ID=BSGatlas-gene-318;color=#1E90FF;Name=kdgD;locus_tag=BSU02460,BSU_02460;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 267890 268816 . + 0 ID=BSGatlas-gene-318_transcribed;color=#1E90FF;Name=kdgD;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="5-dehydro-4-deoxyglucarate dehydratase";synonyms="ycbC";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate";ec="4.2.1.41,EC-4.2.1.41";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016052 carbohydrate catabolic process,GO:0016829 lyase activity,GO:0019394 glucarate catabolic process,GO:0042838 D-glucarate catabolic process,GO:0047448 5-dehydro-4-deoxyglucarate dehydratase activity";derives_from=BSGatlas-gene-318 basu168 BSGatlas UTR 268817 268845 . + . ID=BSGatlas-internal_UTR-116;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas gene 268846 270312 . + . ID=BSGatlas-gene-319;color=#1E90FF;Name=gucD;locus_tag=BSU02470,BSU_02470;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 268846 270312 . + 0 ID=BSGatlas-gene-319_transcribed;color=#1E90FF;Name=gucD;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="2,5-dioxovalerate dehydrogenase(alpha-ketoglutaric semialdehyde dehydrogenase)";synonyms="ycbD";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate";ec="1.2.1.26,1.2.1.3,EC-1.2.1";go="GO:0004029 aldehyde dehydrogenase (NAD) activity,GO:0006068 ethanol catabolic process,GO:0016491 oxidoreductase activity,GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-319 basu168 BSGatlas UTR 270313 270395 . + . ID=BSGatlas-internal_UTR-117;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas gene 270396 271763 . + . ID=BSGatlas-gene-320;color=#1E90FF;Name=gudP;locus_tag=BSU02480,BSU_02480;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 270396 271763 . + 0 ID=BSGatlas-gene-320_transcribed;color=#1E90FF;Name=gudP;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="glucarate transporter";synonyms="gudP,ycbE";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.3 Carbohydrate transporter,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-320 basu168 BSGatlas UTR 271764 271799 . + . ID=BSGatlas-internal_UTR-118;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas gene 271800 273167 . + . ID=BSGatlas-gene-321;color=#1E90FF;Name=gudD;locus_tag=BSU02490,BSU_02490;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 271800 273167 . + 0 ID=BSGatlas-gene-321_transcribed;color=#1E90FF;Name=gudD;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="glucarate dehydratase";synonyms="gudD,ycbF";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate";ec="4.2.1.40,EC-4.2.1.40";go="GO:0000287 magnesium ion binding,GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0008872 glucarate dehydratase activity,GO:0016829 lyase activity,GO:0019394 glucarate catabolic process,GO:0042838 D-glucarate catabolic process,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-321 basu168 BSGatlas UTR 273168 273236 . + . ID=BSGatlas-internal_UTR-119;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas transcript 273206 273954 . + . ID=BSGatlas-transcript-257;color=#FF9900;Parent=BSGatlas-operon-103,BSGatlas-gene-322;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-192 basu168 BSGatlas exon 273206 273954 . + . ID=BSGatlas-transcript-257_exon;Parent=BSGatlas-transcript-257 basu168 BSGatlas UTR 273206 273236 . + . ID=BSGatlas-5'UTR-147;Parent=BSGatlas-transcript-257;comment="5'UTR" basu168 BSGatlas TSS 273206 273206 . + . ID=BSGatlas-TSS-192;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 273237 273938 . + . ID=BSGatlas-gene-322;color=#1E90FF;Name=garR;locus_tag=BSU02500,BSU_02500;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 273237 273938 . + 0 ID=BSGatlas-gene-322_transcribed;color=#1E90FF;Name=garR;Parent=BSGatlas-transcript-255,BSGatlas-transcript-256,BSGatlas-transcript-257;comment="transcriptional regulator (GntR family)";synonyms="ycbG";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-322 basu168 BSGatlas terminator 273866 273954 . + . ID=BSGatlas-terminator-124;Parent=BSGatlas-transcript-255,BSGatlas-transcript-257;comment="Based on: Nicolas et al. downshift, Energy: -9.5[kcal/mol]" basu168 BSGatlas UTR 273939 274028 . + . ID=BSGatlas-internal_UTR-120;Parent=BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas UTR 273939 273954 . + . ID=BSGatlas-3'UTR-75;Parent=BSGatlas-transcript-255,BSGatlas-transcript-257;comment="3'UTR" basu168 BSGatlas gene 274029 275561 . + . ID=BSGatlas-gene-323;color=#1E90FF;Name=garD;locus_tag=BSU02510,BSU_02510;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 274029 275561 . + 0 ID=BSGatlas-gene-323_transcribed;color=#1E90FF;Name=garD;Parent=BSGatlas-transcript-256;comment="D-galactarate dehydratase";synonyms="garD,ycbH";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.14 Utilization of glucarate/galactarate";ec="4.2.1.42,EC-4.2.1.42";go="GO:0008867 galactarate dehydratase activity,GO:0016829 lyase activity,GO:0016836 hydro-lyase activity,GO:0046392 galactarate catabolic process";derives_from=BSGatlas-gene-323 basu168 BSGatlas UTR 275562 275608 . + . ID=BSGatlas-internal_UTR-121;Parent=BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas TSS 275603 275603 . + . ID=BSGatlas-TSS-193;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 275609 275716 . + . ID=BSGatlas-gene-324;color=#CC0000;Name=S95;locus_tag=new_275603_275837;Parent=BSGatlas-operon-103 basu168 BSGatlas ncRNA 275609 275716 . + . ID=BSGatlas-gene-324_transcribed;color=#CC0000;Name=S95;Parent=BSGatlas-transcript-256;synonyms="S95";derives_from=BSGatlas-gene-324 basu168 BSGatlas UTR 275717 275837 . + . ID=BSGatlas-internal_UTR-122;Parent=BSGatlas-transcript-256;comment="internal_UTR" basu168 BSGatlas gene 275838 276758 . + . ID=BSGatlas-gene-325;color=#1E90FF;Name=ycbJ;locus_tag=BSU02520,BSU_02520;Parent=BSGatlas-operon-103 basu168 BSGatlas CDS 275838 276758 . + 0 ID=BSGatlas-gene-325_transcribed;color=#1E90FF;Name=ycbJ;Parent=BSGatlas-transcript-256;comment="putative phosphotransferase";synonyms="ycbJ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups";derives_from=BSGatlas-gene-325 basu168 BSGatlas operon 276798 278348 . + . ID=BSGatlas-operon-104;color=#FF00CC basu168 BSGatlas transcript 276798 278348 . + . ID=BSGatlas-transcript-259;color=#FF9900;Parent=BSGatlas-operon-104,BSGatlas-gene-327,BSGatlas-gene-328;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-194 basu168 BSGatlas exon 276798 278348 . + . ID=BSGatlas-transcript-259_exon;Parent=BSGatlas-transcript-259 basu168 BSGatlas transcript 276798 277408 . + . ID=BSGatlas-transcript-258;color=#FF9900;Parent=BSGatlas-operon-104,BSGatlas-gene-327;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-194 basu168 BSGatlas exon 276798 277408 . + . ID=BSGatlas-transcript-258_exon;Parent=BSGatlas-transcript-258 basu168 BSGatlas UTR 276798 277159 . + . ID=BSGatlas-5'UTR-148;Parent=BSGatlas-transcript-258,BSGatlas-transcript-259;comment="5'UTR" basu168 BSGatlas TSS 276798 276798 . + . ID=BSGatlas-TSS-194;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10706627" basu168 BSGatlas operon 276814 277089 . + . ID=BSGatlas-operon-105;color=#FF00CC basu168 BSGatlas transcript 276814 277089 . + . ID=BSGatlas-transcript-260;color=#FF9900;Parent=BSGatlas-operon-105,BSGatlas-gene-326;comment="Based on: BSGatlas" basu168 BSGatlas exon 276814 277089 . + . ID=BSGatlas-transcript-260_exon;Parent=BSGatlas-transcript-260 basu168 BSGatlas gene 276814 277062 . + . ID=BSGatlas-gene-326;color=#999999;Name=T-box_tboW;locus_tag=BSU_misc_RNA_6,BSU_MISC_RNA_6;Parent=BSGatlas-operon-105 basu168 BSGatlas riboswitch 276814 277062 . + . ID=BSGatlas-gene-326_transcribed;color=#999999;Name=T-box_tboW;Parent=BSGatlas-transcript-260;comment="T-box riboswitch specific of tryptophan tRNAligase";synonyms="BSU_misc_RNA_6";derives_from=BSGatlas-gene-326 basu168 BSGatlas terminator 277039 277089 . + . ID=BSGatlas-terminator-125;Parent=BSGatlas-transcript-260;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.5[kcal/mol]" basu168 BSGatlas UTR 277063 277089 . + . ID=BSGatlas-3'UTR-76;Parent=BSGatlas-transcript-260;comment="3'UTR" basu168 BSGatlas gene 277160 277321 . + . ID=BSGatlas-gene-327;color=#1E90FF;Name=rtpA;locus_tag=BSU02530,BSU_02530;Parent=BSGatlas-operon-104 basu168 BSGatlas CDS 277160 277321 . + 0 ID=BSGatlas-gene-327_transcribed;color=#1E90FF;Name=rtpA;Parent=BSGatlas-transcript-258,BSGatlas-transcript-259;comment="anti-TRAP regulator";synonyms="rtpA,yczA";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system)";go="GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0031072 heat shock protein binding,GO:0051082 unfolded protein binding";derives_from=BSGatlas-gene-327 basu168 BSGatlas transcript 277298 278348 . + . ID=BSGatlas-transcript-261;color=#FF9900;Parent=BSGatlas-operon-104,BSGatlas-gene-328;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-195 basu168 BSGatlas exon 277298 278348 . + . ID=BSGatlas-transcript-261_exon;Parent=BSGatlas-transcript-261 basu168 BSGatlas UTR 277298 277341 . + . ID=BSGatlas-5'UTR-149;Parent=BSGatlas-transcript-261;comment="5'UTR" basu168 BSGatlas TSS 277298 277298 . + . ID=BSGatlas-TSS-195;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 277322 277408 . + . ID=BSGatlas-3'UTR-77;Parent=BSGatlas-transcript-258;comment="3'UTR" basu168 BSGatlas UTR 277322 277341 . + . ID=BSGatlas-internal_UTR-123;Parent=BSGatlas-transcript-259;comment="internal_UTR" basu168 BSGatlas gene 277342 278280 . + . ID=BSGatlas-gene-328;color=#1E90FF;Name=ycbK;locus_tag=BSU02540,BSU_02540;Parent=BSGatlas-operon-104 basu168 BSGatlas CDS 277342 278280 . + 0 ID=BSGatlas-gene-328_transcribed;color=#1E90FF;Name=ycbK;Parent=BSGatlas-transcript-259,BSGatlas-transcript-261;comment="putative tryptophan or indole exporter";synonyms="ycbK";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000303 response to superoxide,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0042542 response to hydrogen peroxide";derives_from=BSGatlas-gene-328 basu168 BSGatlas terminator 277364 277408 . + . ID=BSGatlas-terminator-126;Parent=BSGatlas-transcript-258;comment="Based on: Nicolas et al. downshift, Energy: -9[kcal/mol]" basu168 BSGatlas UTR 278281 278348 . + . ID=BSGatlas-3'UTR-78;Parent=BSGatlas-transcript-259,BSGatlas-transcript-261;comment="3'UTR" basu168 BSGatlas operon 278308 281731 . + . ID=BSGatlas-operon-106;color=#FF00CC basu168 BSGatlas transcript 278308 281731 . + . ID=BSGatlas-transcript-263;color=#FF9900;Parent=BSGatlas-operon-106,BSGatlas-gene-329,BSGatlas-gene-330,BSGatlas-gene-331,BSGatlas-gene-332;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-196 basu168 BSGatlas exon 278308 281731 . + . ID=BSGatlas-transcript-263_exon;Parent=BSGatlas-transcript-263 basu168 BSGatlas transcript 278308 279994 . + . ID=BSGatlas-transcript-262;color=#FF9900;Parent=BSGatlas-operon-106,BSGatlas-gene-329,BSGatlas-gene-330;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-196 basu168 BSGatlas exon 278308 279994 . + . ID=BSGatlas-transcript-262_exon;Parent=BSGatlas-transcript-262 basu168 BSGatlas UTR 278308 278376 . + . ID=BSGatlas-5'UTR-150;Parent=BSGatlas-transcript-262,BSGatlas-transcript-263;comment="5'UTR" basu168 BSGatlas terminator 278308 278348 . + . ID=BSGatlas-terminator-127;Parent=BSGatlas-transcript-259,BSGatlas-transcript-261;comment="Based on: BsubCyc,DBTBS, Energy: -2.7[kcal/mol]" basu168 BSGatlas TSS 278308 278308 . + . ID=BSGatlas-TSS-196;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 278377 279057 . + . ID=BSGatlas-gene-329;color=#1E90FF;Name=ycbL;locus_tag=BSU02550,BSU_02550;Parent=BSGatlas-operon-106 basu168 BSGatlas CDS 278377 279057 . + 0 ID=BSGatlas-gene-329_transcribed;color=#1E90FF;Name=ycbL;Parent=BSGatlas-transcript-262,BSGatlas-transcript-263;comment="two-component response regulator [YcbM]";synonyms="ycbL";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-329 basu168 BSGatlas gene 279059 279994 . + . ID=BSGatlas-gene-330;color=#1E90FF;Name=ycbM;locus_tag=BSU02560,BSU_02560;Parent=BSGatlas-operon-106 basu168 BSGatlas CDS 279059 279994 . + 0 ID=BSGatlas-gene-330_transcribed;color=#1E90FF;Name=ycbM;Parent=BSGatlas-transcript-262,BSGatlas-transcript-263;comment="two-component sensor histidine kinase [YcbL]";synonyms="ycbM";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000155 phosphorelay sensor kinase activity,GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0004871 NA,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups,GO:0018106 peptidyl-histidine phosphorylation,GO:0023014 signal transduction by protein phosphorylation";derives_from=BSGatlas-gene-330 basu168 BSGatlas UTR 279995 280085 . + . ID=BSGatlas-internal_UTR-124;Parent=BSGatlas-transcript-263;comment="internal_UTR" basu168 BSGatlas gene 280086 281009 . + . ID=BSGatlas-gene-331;color=#1E90FF;Name=ycbN;locus_tag=BSU02570,BSU_02570;Parent=BSGatlas-operon-106 basu168 BSGatlas CDS 280086 281009 . + 0 ID=BSGatlas-gene-331_transcribed;color=#1E90FF;Name=ycbN;Parent=BSGatlas-transcript-263;comment="putative ABC efflux transporter (ATP-bindingprotein)";synonyms="ycbN";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.6 Exporters of unknown function";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0008152 metabolic process,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-331 basu168 BSGatlas operon 280523 281809 . - . ID=BSGatlas-operon-107;color=#B32496 basu168 BSGatlas transcript 280523 281809 . - . ID=BSGatlas-transcript-264;color=#B37924;Parent=BSGatlas-operon-107,BSGatlas-gene-333;comment="Based on: BSGatlas" basu168 BSGatlas exon 280523 281809 . - . ID=BSGatlas-transcript-264_exon;Parent=BSGatlas-transcript-264 basu168 BSGatlas UTR 280523 281674 . - . ID=BSGatlas-3'UTR-79;Parent=BSGatlas-transcript-264;comment="3'UTR" basu168 BSGatlas terminator 280523 280589 . - . ID=BSGatlas-terminator-128;Parent=BSGatlas-transcript-264;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas UTR 281010 281027 . + . ID=BSGatlas-internal_UTR-125;Parent=BSGatlas-transcript-263;comment="internal_UTR" basu168 BSGatlas gene 281028 281714 . + . ID=BSGatlas-gene-332;color=#1E90FF;Name=ycbO;locus_tag=BSU02580,BSU_02580;Parent=BSGatlas-operon-106 basu168 BSGatlas CDS 281028 281714 . + 0 ID=BSGatlas-gene-332_transcribed;color=#1E90FF;Name=ycbO;Parent=BSGatlas-transcript-263;comment="putative Na+-driven exporter";synonyms="ycbO";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-332 basu168 BSGatlas gene 281675 281809 . - . ID=BSGatlas-gene-333;color=#3474B3;locus_tag=BSU_02585;Parent=BSGatlas-operon-107 basu168 BSGatlas CDS 281675 281809 . - 0 ID=BSGatlas-gene-333_transcribed;color=#3474B3;Parent=BSGatlas-transcript-264;comment="hypothetical protein";derives_from=BSGatlas-gene-333 basu168 BSGatlas terminator 281687 281731 . + . ID=BSGatlas-terminator-129;Parent=BSGatlas-transcript-263;comment="Based on: Nicolas et al. downshift, Energy: -11.4[kcal/mol]" basu168 BSGatlas UTR 281715 281731 . + . ID=BSGatlas-3'UTR-80;Parent=BSGatlas-transcript-263;comment="3'UTR" basu168 BSGatlas terminator 281763 281807 . - . ID=BSGatlas-terminator-130;Parent=BSGatlas-transcript-265,BSGatlas-transcript-266,BSGatlas-transcript-267,BSGatlas-transcript-268;comment="Based on: Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas operon 281769 284071 . - . ID=BSGatlas-operon-108;color=#B32496 basu168 BSGatlas transcript 281769 284071 . - . ID=BSGatlas-transcript-268;color=#B37924;Parent=BSGatlas-operon-108,BSGatlas-gene-334;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-203 basu168 BSGatlas exon 281769 284071 . - . ID=BSGatlas-transcript-268_exon;Parent=BSGatlas-transcript-268 basu168 BSGatlas transcript 281769 283231 . - . ID=BSGatlas-transcript-267;color=#B37924;Parent=BSGatlas-operon-108,BSGatlas-gene-334;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-201 basu168 BSGatlas exon 281769 283231 . - . ID=BSGatlas-transcript-267_exon;Parent=BSGatlas-transcript-267 basu168 BSGatlas transcript 281769 282445 . - . ID=BSGatlas-transcript-266;color=#B37924;Parent=BSGatlas-operon-108,BSGatlas-gene-334;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-198 basu168 BSGatlas exon 281769 282445 . - . ID=BSGatlas-transcript-266_exon;Parent=BSGatlas-transcript-266 basu168 BSGatlas transcript 281769 282200 . - . ID=BSGatlas-transcript-265;color=#B37924;Parent=BSGatlas-operon-108,BSGatlas-gene-334;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-197 basu168 BSGatlas exon 281769 282200 . - . ID=BSGatlas-transcript-265_exon;Parent=BSGatlas-transcript-265 basu168 BSGatlas gene 281769 282155 . - . ID=BSGatlas-gene-334;color=#3474B3;Name=ycbP;locus_tag=BSU02590,BSU_02590;Parent=BSGatlas-operon-108 basu168 BSGatlas CDS 281769 282155 . - 0 ID=BSGatlas-gene-334_transcribed;color=#3474B3;Name=ycbP;Parent=BSGatlas-transcript-265,BSGatlas-transcript-266,BSGatlas-transcript-267,BSGatlas-transcript-268;comment="putative inner integral membrane protein";synonyms="ycbP";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-334 basu168 BSGatlas UTR 282156 284071 . - . ID=BSGatlas-5'UTR-154;Parent=BSGatlas-transcript-268;comment="5'UTR" basu168 BSGatlas UTR 282156 283231 . - . ID=BSGatlas-5'UTR-153;Parent=BSGatlas-transcript-267;comment="5'UTR" basu168 BSGatlas UTR 282156 282445 . - . ID=BSGatlas-5'UTR-152;Parent=BSGatlas-transcript-266;comment="5'UTR" basu168 BSGatlas UTR 282156 282200 . - . ID=BSGatlas-5'UTR-151;Parent=BSGatlas-transcript-265;comment="5'UTR" basu168 BSGatlas TSS 282200 282200 . - . ID=BSGatlas-TSS-197;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 282254 282298 . - . ID=BSGatlas-terminator-131;comment="Based on: Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas terminator 282445 282489 . - . ID=BSGatlas-terminator-132;comment="Based on: Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas TSS 282445 282445 . - . ID=BSGatlas-TSS-198;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 282446 282941 . + . ID=BSGatlas-operon-109;color=#FF00CC basu168 BSGatlas transcript 282446 282941 . + . ID=BSGatlas-transcript-270;color=#FF9900;Parent=BSGatlas-operon-109,BSGatlas-gene-335;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-199 basu168 BSGatlas exon 282446 282941 . + . ID=BSGatlas-transcript-270_exon;Parent=BSGatlas-transcript-270 basu168 BSGatlas transcript 282446 282897 . + . ID=BSGatlas-transcript-269;color=#FF9900;Parent=BSGatlas-operon-109,BSGatlas-gene-335;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-199 basu168 BSGatlas exon 282446 282897 . + . ID=BSGatlas-transcript-269_exon;Parent=BSGatlas-transcript-269 basu168 BSGatlas UTR 282446 282468 . + . ID=BSGatlas-5'UTR-155;Parent=BSGatlas-transcript-269,BSGatlas-transcript-270;comment="5'UTR" basu168 BSGatlas TSS 282446 282446 . + . ID=BSGatlas-TSS-199;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,9515903" basu168 BSGatlas gene 282469 282897 . + . ID=BSGatlas-gene-335;color=#1E90FF;Name=cwlJ;locus_tag=BSU02600,BSU_02600;Parent=BSGatlas-operon-109 basu168 BSGatlas CDS 282469 282897 . + 0 ID=BSGatlas-gene-335_transcribed;color=#1E90FF;Name=cwlJ;Parent=BSGatlas-transcript-269,BSGatlas-transcript-270;comment="spore cortex cell wall hydrolase";synonyms="cwlJ,ycbQ";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.5 Cell wall/ other,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.3 Class III,SW 4.2.4 Germination,SW 4.2.4.2 Additional germination proteins";go="GO:0005576 extracellular region,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-335 basu168 BSGatlas terminator 282854 282898 . + . ID=BSGatlas-terminator-133;Parent=BSGatlas-transcript-269;comment="Based on: Nicolas et al. downshift, Energy: -11.4[kcal/mol]" basu168 BSGatlas UTR 282898 282941 . + . ID=BSGatlas-3'UTR-81;Parent=BSGatlas-transcript-270;comment="3'UTR" basu168 BSGatlas terminator 282901 282941 . + . ID=BSGatlas-terminator-134;Parent=BSGatlas-transcript-270;comment="Based on: BsubCyc,DBTBS, Energy: -15.1[kcal/mol]" basu168 BSGatlas operon 282963 283776 . + . ID=BSGatlas-operon-110;color=#FF00CC basu168 BSGatlas transcript 282963 283776 . + . ID=BSGatlas-transcript-272;color=#FF9900;Parent=BSGatlas-operon-110,BSGatlas-gene-336;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-200 basu168 BSGatlas exon 282963 283776 . + . ID=BSGatlas-transcript-272_exon;Parent=BSGatlas-transcript-272 basu168 BSGatlas transcript 282963 283734 . + . ID=BSGatlas-transcript-271;color=#FF9900;Parent=BSGatlas-operon-110,BSGatlas-gene-336;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-200 basu168 BSGatlas exon 282963 283734 . + . ID=BSGatlas-transcript-271_exon;Parent=BSGatlas-transcript-271 basu168 BSGatlas UTR 282963 283002 . + . ID=BSGatlas-5'UTR-156;Parent=BSGatlas-transcript-271,BSGatlas-transcript-272;comment="5'UTR" basu168 BSGatlas TSS 282963 282963 . + . ID=BSGatlas-TSS-200;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 283003 283734 . + . ID=BSGatlas-gene-336;color=#1E90FF;Name=ycbR;locus_tag=BSU02610,BSU_02610;Parent=BSGatlas-operon-110 basu168 BSGatlas CDS 283003 283734 . + 0 ID=BSGatlas-gene-336_transcribed;color=#1E90FF;Name=ycbR;Parent=BSGatlas-transcript-271,BSGatlas-transcript-272;comment="conserved protein of unknown function";synonyms="ycbR";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.12 Resistance against toxic metals/ based on similarity";derives_from=BSGatlas-gene-336 basu168 BSGatlas TSS 283231 283231 . - . ID=BSGatlas-TSS-201;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 283630 283674 . + . ID=BSGatlas-terminator-135;Parent=BSGatlas-transcript-271;comment="Based on: Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas UTR 283735 283776 . + . ID=BSGatlas-3'UTR-82;Parent=BSGatlas-transcript-272;comment="3'UTR" basu168 BSGatlas terminator 283746 283776 . + . ID=BSGatlas-terminator-136;Parent=BSGatlas-transcript-272;comment="Based on: BsubCyc, Energy: -17.5[kcal/mol]" basu168 BSGatlas gene 283816 283992 . + . ID=BSGatlas-gene-337;color=#1E90FF;Name=yczK;locus_tag=BSU02619,BSU_02619 basu168 BSGatlas CDS 283816 283992 . + 0 ID=BSGatlas-gene-337_transcribed;color=#1E90FF;Name=yczK;comment="conserved protein of unknown function";synonyms="yczK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-337 basu168 BSGatlas operon 283984 286776 . + . ID=BSGatlas-operon-111;color=#FF00CC basu168 BSGatlas transcript 283984 286776 . + . ID=BSGatlas-transcript-274;color=#FF9900;Parent=BSGatlas-operon-111,BSGatlas-gene-338,BSGatlas-gene-339,BSGatlas-gene-340;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-202 basu168 BSGatlas exon 283984 286776 . + . ID=BSGatlas-transcript-274_exon;Parent=BSGatlas-transcript-274 basu168 BSGatlas transcript 283984 285762 . + . ID=BSGatlas-transcript-273;color=#FF9900;Parent=BSGatlas-operon-111,BSGatlas-gene-338;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-202 basu168 BSGatlas exon 283984 285762 . + . ID=BSGatlas-transcript-273_exon;Parent=BSGatlas-transcript-273 basu168 BSGatlas UTR 283984 284010 . + . ID=BSGatlas-5'UTR-157;Parent=BSGatlas-transcript-273,BSGatlas-transcript-274;comment="5'UTR" basu168 BSGatlas TSS 283984 283984 . + . ID=BSGatlas-TSS-202;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10094677,17962296" basu168 BSGatlas gene 284011 285762 . + . ID=BSGatlas-gene-338;color=#1E90FF;Name=phoD;locus_tag=BSU02620,BSU_02620;Parent=BSGatlas-operon-111 basu168 BSGatlas CDS 284011 285762 . + 0 ID=BSGatlas-gene-338_transcribed;color=#1E90FF;Name=phoD;Parent=BSGatlas-transcript-273,BSGatlas-transcript-274;comment="secreted phosphodiesterase (endo-hydrolysis atnon-specific sites throughout the cell wall teichoic acidpolymer)";synonyms="phoD,ycbS";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.3 Phosphate metabolism,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.1.3.1,3.1.4.46,EC-3.1.3.1";go="GO:0004035 alkaline phosphatase activity,GO:0005509 calcium ion binding,GO:0006950 response to stress,GO:0008152 metabolic process,GO:0008199 ferric iron binding,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity,GO:0070399 wall teichoic acid catabolic process";derives_from=BSGatlas-gene-338 basu168 BSGatlas TSS 284071 284071 . - . ID=BSGatlas-TSS-203;color=#B32424;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 285775 285987 . + . ID=BSGatlas-gene-339;color=#1E90FF;Name=tatAD;locus_tag=BSU02630,BSU_02630;Parent=BSGatlas-operon-111 basu168 BSGatlas CDS 285775 285987 . + 0 ID=BSGatlas-gene-339_transcribed;color=#1E90FF;Name=tatAD;Parent=BSGatlas-transcript-274;comment="component of the twin-arginine pre-proteintranslocation pathway";synonyms="tatAD,yczB";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.3 Phosphate metabolism,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0005886 plasma membrane,GO:0005887 integral component of plasma membrane,GO:0006810 transport,GO:0008320 protein transmembrane transporter activity,GO:0008565 protein transporter activity,GO:0009306 protein secretion,GO:0015031 protein transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0033281 TAT protein transport complex,GO:0043953 protein transport by the Tat complex";derives_from=BSGatlas-gene-339 basu168 BSGatlas UTR 285988 286047 . + . ID=BSGatlas-internal_UTR-126;Parent=BSGatlas-transcript-274;comment="internal_UTR" basu168 BSGatlas operon 286034 287845 . - . ID=BSGatlas-operon-112;color=#B32496 basu168 BSGatlas transcript 286034 287845 . - . ID=BSGatlas-transcript-276;color=#B37924;Parent=BSGatlas-operon-112,BSGatlas-gene-341;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-206 basu168 BSGatlas exon 286034 287845 . - . ID=BSGatlas-transcript-276_exon;Parent=BSGatlas-transcript-276 basu168 BSGatlas transcript 286034 287449 . - . ID=BSGatlas-transcript-275;color=#B37924;Parent=BSGatlas-operon-112,BSGatlas-gene-341;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-204 basu168 BSGatlas exon 286034 287449 . - . ID=BSGatlas-transcript-275_exon;Parent=BSGatlas-transcript-275 basu168 BSGatlas UTR 286034 286772 . - . ID=BSGatlas-3'UTR-83;Parent=BSGatlas-transcript-275,BSGatlas-transcript-276;comment="3'UTR" basu168 BSGatlas terminator 286034 286078 . - . ID=BSGatlas-terminator-137;Parent=BSGatlas-transcript-275,BSGatlas-transcript-276;comment="Based on: Nicolas et al. downshift, Energy: -8.5[kcal/mol]" basu168 BSGatlas gene 286048 286776 . + . ID=BSGatlas-gene-340;color=#1E90FF;Name=tatCD;locus_tag=BSU02640,BSU_02640;Parent=BSGatlas-operon-111 basu168 BSGatlas CDS 286048 286776 . + 0 ID=BSGatlas-gene-340_transcribed;color=#1E90FF;Name=tatCD;Parent=BSGatlas-transcript-274;comment="component of the twin-arginine pre-proteintranslocation pathway";synonyms="tatCD,ycbT";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.3 Phosphate metabolism,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0005887 integral component of plasma membrane,GO:0006810 transport,GO:0008320 protein transmembrane transporter activity,GO:0015031 protein transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0033281 TAT protein transport complex,GO:0043953 protein transport by the Tat complex";derives_from=BSGatlas-gene-340 basu168 BSGatlas gene 286773 287420 . - . ID=BSGatlas-gene-341;color=#3474B3;Name=pcp;locus_tag=BSU02650,BSU_02650;Parent=BSGatlas-operon-112 basu168 BSGatlas CDS 286773 287420 . - 0 ID=BSGatlas-gene-341_transcribed;color=#3474B3;Name=pcp;Parent=BSGatlas-transcript-275,BSGatlas-transcript-276;comment="pyrrolidone-carboxylate (pyroglutamate)peptidase";synonyms="pcp";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.8 Protein modification/ other";ec="3.4.11.8,3.4.19.3,EC-3.4.19.3";go="GO:0005737 cytoplasm,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008234 cysteine-type peptidase activity,GO:0016787 hydrolase activity,GO:0016920 pyroglutamyl-peptidase activity";derives_from=BSGatlas-gene-341 basu168 BSGatlas UTR 287421 287845 . - . ID=BSGatlas-5'UTR-159;Parent=BSGatlas-transcript-276;comment="5'UTR" basu168 BSGatlas UTR 287421 287449 . - . ID=BSGatlas-5'UTR-158;Parent=BSGatlas-transcript-275;comment="5'UTR" basu168 BSGatlas TSS 287449 287449 . - . ID=BSGatlas-TSS-204;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 287471 288659 . + . ID=BSGatlas-operon-113;color=#FF00CC basu168 BSGatlas transcript 287471 288659 . + . ID=BSGatlas-transcript-277;color=#FF9900;Parent=BSGatlas-operon-113,BSGatlas-gene-342;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-205 basu168 BSGatlas exon 287471 288659 . + . ID=BSGatlas-transcript-277_exon;Parent=BSGatlas-transcript-277 basu168 BSGatlas UTR 287471 287498 . + . ID=BSGatlas-5'UTR-160;Parent=BSGatlas-transcript-277;comment="5'UTR" basu168 BSGatlas TSS 287471 287471 . + . ID=BSGatlas-TSS-205;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 287499 288611 . + . ID=BSGatlas-gene-342;color=#1E90FF;Name=ycbU;locus_tag=BSU02660,BSU_02660;Parent=BSGatlas-operon-113 basu168 BSGatlas CDS 287499 288611 . + 0 ID=BSGatlas-gene-342_transcribed;color=#1E90FF;Name=ycbU;Parent=BSGatlas-transcript-277;comment="putative lyase (PLP-dependent)";synonyms="ycbU";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="EC-2.8.1.7";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0008483 transaminase activity,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-342 basu168 BSGatlas TSS 287845 287845 . - . ID=BSGatlas-TSS-206;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 288607 290740 . - . ID=BSGatlas-operon-114;color=#B32496 basu168 BSGatlas transcript 288607 290740 . - . ID=BSGatlas-transcript-278;color=#B37924;Parent=BSGatlas-operon-114,BSGatlas-gene-344,BSGatlas-gene-343;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-207 basu168 BSGatlas exon 288607 290740 . - . ID=BSGatlas-transcript-278_exon;Parent=BSGatlas-transcript-278 basu168 BSGatlas UTR 288607 288652 . - . ID=BSGatlas-3'UTR-84;Parent=BSGatlas-transcript-278;comment="3'UTR" basu168 BSGatlas terminator 288607 288649 . - . ID=BSGatlas-terminator-138;Parent=BSGatlas-transcript-278;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.6[kcal/mol]" basu168 BSGatlas UTR 288612 288659 . + . ID=BSGatlas-3'UTR-85;Parent=BSGatlas-transcript-277;comment="3'UTR" basu168 BSGatlas terminator 288617 288659 . + . ID=BSGatlas-terminator-139;Parent=BSGatlas-transcript-277;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.7[kcal/mol]" basu168 BSGatlas gene 288653 290092 . - . ID=BSGatlas-gene-343;color=#3474B3;Name=lmrB;locus_tag=BSU02670,BSU_02670;Parent=BSGatlas-operon-114 basu168 BSGatlas CDS 288653 290092 . - 0 ID=BSGatlas-gene-343_transcribed;color=#3474B3;Name=lmrB;Parent=BSGatlas-transcript-278;comment="flavonoid efflux transporter; drug-exportprotein";synonyms="lmrB,yccA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0046677 response to antibiotic,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-343 basu168 BSGatlas UTR 290093 290131 . - . ID=BSGatlas-internal_UTR-127;Parent=BSGatlas-transcript-278;comment="internal_UTR" basu168 BSGatlas gene 290132 290698 . - . ID=BSGatlas-gene-344;color=#3474B3;Name=lmrA;locus_tag=BSU02680,BSU_02680;Parent=BSGatlas-operon-114 basu168 BSGatlas CDS 290132 290698 . - 0 ID=BSGatlas-gene-344_transcribed;color=#3474B3;Name=lmrA;Parent=BSGatlas-transcript-278;comment="transcriptional repressor of lmrAB and yxaGHoperons (flavonoid and antibiotic resistance)";synonyms="lin-2,lmrA,yccB";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-344 basu168 BSGatlas UTR 290699 290740 . - . ID=BSGatlas-5'UTR-161;Parent=BSGatlas-transcript-278;comment="5'UTR" basu168 BSGatlas TSS 290740 290740 . - . ID=BSGatlas-TSS-207;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12499232,17962296" basu168 BSGatlas operon 290888 292081 . + . ID=BSGatlas-operon-115;color=#FF00CC basu168 BSGatlas transcript 290888 292081 . + . ID=BSGatlas-transcript-280;color=#FF9900;Parent=BSGatlas-operon-115,BSGatlas-gene-345;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-208 basu168 BSGatlas exon 290888 292081 . + . ID=BSGatlas-transcript-280_exon;Parent=BSGatlas-transcript-280 basu168 BSGatlas transcript 290888 292042 . + . ID=BSGatlas-transcript-279;color=#FF9900;Parent=BSGatlas-operon-115,BSGatlas-gene-345;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-208 basu168 BSGatlas exon 290888 292042 . + . ID=BSGatlas-transcript-279_exon;Parent=BSGatlas-transcript-279 basu168 BSGatlas UTR 290888 290914 . + . ID=BSGatlas-5'UTR-162;Parent=BSGatlas-transcript-279,BSGatlas-transcript-280;comment="5'UTR" basu168 BSGatlas TSS 290888 290888 . + . ID=BSGatlas-TSS-208;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 11914346,17962296" basu168 BSGatlas gene 290915 292042 . + . ID=BSGatlas-gene-345;color=#1E90FF;Name=ansZ;locus_tag=BSU02690,BSU_02690;Parent=BSGatlas-operon-115 basu168 BSGatlas CDS 290915 292042 . + 0 ID=BSGatlas-gene-345_transcribed;color=#1E90FF;Name=ansZ;Parent=BSGatlas-transcript-279,BSGatlas-transcript-280;comment="L-asparaginase 2 (putative lipoprotein)";synonyms="ansZ,yccC";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.6 Utilization of asparagine/ aspartate";ec="3.5.1.1";go="GO:0004067 asparaginase activity,GO:0006520 cellular amino acid metabolic process,GO:0006528 asparagine metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-345 basu168 BSGatlas terminator 291993 292037 . + . ID=BSGatlas-terminator-140;Parent=BSGatlas-transcript-279;comment="Based on: Nicolas et al. downshift, Energy: -7.6[kcal/mol]" basu168 BSGatlas UTR 292043 292081 . + . ID=BSGatlas-3'UTR-86;Parent=BSGatlas-transcript-280;comment="3'UTR" basu168 BSGatlas terminator 292044 292081 . + . ID=BSGatlas-terminator-141;Parent=BSGatlas-transcript-280;comment="Based on: BsubCyc,DBTBS, Energy: -11[kcal/mol]" basu168 BSGatlas operon 292159 292895 . + . ID=BSGatlas-operon-116;color=#FF00CC basu168 BSGatlas transcript 292159 292895 . + . ID=BSGatlas-transcript-281;color=#FF9900;Parent=BSGatlas-operon-116,BSGatlas-gene-346;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-209 basu168 BSGatlas exon 292159 292895 . + . ID=BSGatlas-transcript-281_exon;Parent=BSGatlas-transcript-281 basu168 BSGatlas UTR 292159 292204 . + . ID=BSGatlas-5'UTR-163;Parent=BSGatlas-transcript-281;comment="5'UTR" basu168 BSGatlas TSS 292159 292159 . + . ID=BSGatlas-TSS-209;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 292205 292843 . + . ID=BSGatlas-gene-346;color=#1E90FF;Name=estA;locus_tag=BSU02700,BSU_02700;Parent=BSGatlas-operon-116 basu168 BSGatlas CDS 292205 292843 . + 0 ID=BSGatlas-gene-346_transcribed;color=#1E90FF;Name=estA;Parent=BSGatlas-transcript-281;comment="secreted alkaliphilic lipase";synonyms="lip,lipA";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.4 Utilization of lipids/ other,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.1.1.3,EC-3.1.1.3";go="GO:0004806 triglyceride lipase activity,GO:0005576 extracellular region,GO:0006629 lipid metabolic process,GO:0016042 lipid catabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-346 basu168 BSGatlas UTR 292844 292895 . + . ID=BSGatlas-3'UTR-87;Parent=BSGatlas-transcript-281;comment="3'UTR" basu168 BSGatlas terminator 292851 292895 . + . ID=BSGatlas-terminator-142;Parent=BSGatlas-transcript-281;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.8[kcal/mol]" basu168 BSGatlas operon 292881 293301 . - . ID=BSGatlas-operon-117;color=#B32496 basu168 BSGatlas transcript 292881 293301 . - . ID=BSGatlas-transcript-282;color=#B37924;Parent=BSGatlas-operon-117,BSGatlas-gene-347;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-210 basu168 BSGatlas exon 292881 293301 . - . ID=BSGatlas-transcript-282_exon;Parent=BSGatlas-transcript-282 basu168 BSGatlas gene 292881 293264 . - . ID=BSGatlas-gene-347;color=#3474B3;Name=yczC;locus_tag=BSU02710,BSU_02710;Parent=BSGatlas-operon-117 basu168 BSGatlas CDS 292881 293264 . - 0 ID=BSGatlas-gene-347_transcribed;color=#3474B3;Name=yczC;Parent=BSGatlas-transcript-282;comment="putative integral membrane protein of unknownfunction";synonyms="yczC";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-347 basu168 BSGatlas terminator 292883 292927 . - . ID=BSGatlas-terminator-143;Parent=BSGatlas-transcript-282;comment="Based on: Nicolas et al. downshift, Energy: -12.1[kcal/mol]" basu168 BSGatlas UTR 293265 293301 . - . ID=BSGatlas-5'UTR-164;Parent=BSGatlas-transcript-282;comment="5'UTR" basu168 BSGatlas TSS 293301 293301 . - . ID=BSGatlas-TSS-210;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 293466 294591 . + . ID=BSGatlas-operon-118;color=#FF00CC basu168 BSGatlas transcript 293466 294591 . + . ID=BSGatlas-transcript-283;color=#FF9900;Parent=BSGatlas-operon-118,BSGatlas-gene-348;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-211 basu168 BSGatlas exon 293466 294591 . + . ID=BSGatlas-transcript-283_exon;Parent=BSGatlas-transcript-283 basu168 BSGatlas UTR 293466 293498 . + . ID=BSGatlas-5'UTR-165;Parent=BSGatlas-transcript-283;comment="5'UTR" basu168 BSGatlas TSS 293466 293466 . + . ID=BSGatlas-TSS-211;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 293499 294575 . + . ID=BSGatlas-gene-348;color=#1E90FF;Name=yccF;locus_tag=BSU02720,BSU_02720;Parent=BSGatlas-operon-118 basu168 BSGatlas CDS 293499 294575 . + 0 ID=BSGatlas-gene-348_transcribed;color=#1E90FF;Name=yccF;Parent=BSGatlas-transcript-283;comment="conserved protein of unknown function";synonyms="yccF";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0005524 ATP binding";derives_from=BSGatlas-gene-348 basu168 BSGatlas terminator 294547 294591 . + . ID=BSGatlas-terminator-144;Parent=BSGatlas-transcript-283;comment="Based on: Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas operon 294570 296315 . - . ID=BSGatlas-operon-119;color=#B32496 basu168 BSGatlas transcript 294570 296315 . - . ID=BSGatlas-transcript-285;color=#B37924;Parent=BSGatlas-operon-119,BSGatlas-gene-350,BSGatlas-gene-349;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-212 basu168 BSGatlas exon 294570 296315 . - . ID=BSGatlas-transcript-285_exon;Parent=BSGatlas-transcript-285 basu168 BSGatlas transcript 294570 295571 . - . ID=BSGatlas-transcript-284;color=#B37924;Parent=BSGatlas-operon-119,BSGatlas-gene-349;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas exon 294570 295571 . - . ID=BSGatlas-transcript-284_exon;Parent=BSGatlas-transcript-284 basu168 BSGatlas terminator 294570 294614 . - . ID=BSGatlas-terminator-145;Parent=BSGatlas-transcript-284,BSGatlas-transcript-285;comment="Based on: BsubCyc,DBTBS, Energy: -16.9[kcal/mol]" basu168 BSGatlas UTR 294570 294614 . - . ID=BSGatlas-3'UTR-88;Parent=BSGatlas-transcript-284,BSGatlas-transcript-285;comment="3'UTR" basu168 BSGatlas UTR 294576 294591 . + . ID=BSGatlas-3'UTR-89;Parent=BSGatlas-transcript-283;comment="3'UTR" basu168 BSGatlas transcript 294615 296315 . - . ID=BSGatlas-transcript-287;color=#B37924;Parent=BSGatlas-operon-119,BSGatlas-gene-350,BSGatlas-gene-349;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-212 basu168 BSGatlas exon 294615 296315 . - . ID=BSGatlas-transcript-287_exon;Parent=BSGatlas-transcript-287 basu168 BSGatlas gene 294615 295571 . - . ID=BSGatlas-gene-349;color=#3474B3;Name=natK;locus_tag=BSU02730,BSU_02730;Parent=BSGatlas-operon-119 basu168 BSGatlas transcript 294615 295571 . - . ID=BSGatlas-transcript-286;color=#B37924;Parent=BSGatlas-operon-119,BSGatlas-gene-349;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas CDS 294615 295571 . - 0 ID=BSGatlas-gene-349_transcribed;color=#3474B3;Name=natK;Parent=BSGatlas-transcript-284,BSGatlas-transcript-285,BSGatlas-transcript-286,BSGatlas-transcript-287;comment="two-component sensor histidine kinase [NatR]";synonyms="natK,yccG";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0018106 peptidyl-histidine phosphorylation,GO:0031975 envelope";derives_from=BSGatlas-gene-349 basu168 BSGatlas exon 294615 295571 . - . ID=BSGatlas-transcript-286_exon;Parent=BSGatlas-transcript-286 basu168 BSGatlas terminator 294621 294665 . - . ID=BSGatlas-terminator-146;Parent=BSGatlas-transcript-286,BSGatlas-transcript-287;comment="Based on: Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas transcript 295584 296315 . - . ID=BSGatlas-transcript-288;color=#B37924;Parent=BSGatlas-operon-119,BSGatlas-gene-350;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-212 basu168 BSGatlas exon 295584 296315 . - . ID=BSGatlas-transcript-288_exon;Parent=BSGatlas-transcript-288 basu168 BSGatlas gene 295584 296285 . - . ID=BSGatlas-gene-350;color=#3474B3;Name=natR;locus_tag=BSU02740,BSU_02740;Parent=BSGatlas-operon-119 basu168 BSGatlas CDS 295584 296285 . - 0 ID=BSGatlas-gene-350_transcribed;color=#3474B3;Name=natR;Parent=BSGatlas-transcript-285,BSGatlas-transcript-287,BSGatlas-transcript-288;comment="two-component response regulator [NatK]";synonyms="natR,yccH";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg),SW 1.3.1.2 Sodium uptake/ export,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-350 basu168 BSGatlas UTR 296286 296315 . - . ID=BSGatlas-5'UTR-166;Parent=BSGatlas-transcript-285,BSGatlas-transcript-287,BSGatlas-transcript-288;comment="5'UTR" basu168 BSGatlas TSS 296315 296315 . - . ID=BSGatlas-TSS-212;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 296394 298374 . + . ID=BSGatlas-operon-120;color=#FF00CC basu168 BSGatlas transcript 296394 298374 . + . ID=BSGatlas-transcript-289;color=#FF9900;Parent=BSGatlas-operon-120,BSGatlas-gene-351,BSGatlas-gene-352;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-213 basu168 BSGatlas exon 296394 298374 . + . ID=BSGatlas-transcript-289_exon;Parent=BSGatlas-transcript-289 basu168 BSGatlas UTR 296394 296428 . + . ID=BSGatlas-5'UTR-167;Parent=BSGatlas-transcript-289;comment="5'UTR" basu168 BSGatlas TSS 296394 296394 . + . ID=BSGatlas-TSS-213;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 296429 297169 . + . ID=BSGatlas-gene-351;color=#1E90FF;Name=natA;locus_tag=BSU02750,BSU_02750;Parent=BSGatlas-operon-120 basu168 BSGatlas CDS 296429 297169 . + 0 ID=BSGatlas-gene-351_transcribed;color=#1E90FF;Name=natA;Parent=BSGatlas-transcript-289;comment="Na+ ABC efflux transporter (ATP-bindingprotein)";synonyms="natA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.5 Export of ions,SW 1.3 Homeostasis,SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg),SW 1.3.1.2 Sodium uptake/ export,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0006811 ion transport,GO:0006814 sodium ion transport,GO:0008152 metabolic process,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-351 basu168 BSGatlas gene 297170 298330 . + . ID=BSGatlas-gene-352;color=#1E90FF;Name=natB;locus_tag=BSU02760,BSU_02760;Parent=BSGatlas-operon-120 basu168 BSGatlas CDS 297170 298330 . + 0 ID=BSGatlas-gene-352_transcribed;color=#1E90FF;Name=natB;Parent=BSGatlas-transcript-289;comment="Na+ ABC efflux transporter (permease)";synonyms="natB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.5 Export of ions,SW 1.3 Homeostasis,SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg),SW 1.3.1.2 Sodium uptake/ export,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006814 sodium ion transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-352 basu168 BSGatlas UTR 298331 298374 . + . ID=BSGatlas-3'UTR-90;Parent=BSGatlas-transcript-289;comment="3'UTR" basu168 BSGatlas terminator 298336 298374 . + . ID=BSGatlas-terminator-147;Parent=BSGatlas-transcript-289;comment="Based on: BsubCyc,DBTBS, Energy: -9.8[kcal/mol]" basu168 BSGatlas operon 298401 299437 . + . ID=BSGatlas-operon-121;color=#FF00CC basu168 BSGatlas transcript 298401 299437 . + . ID=BSGatlas-transcript-290;color=#FF9900;Parent=BSGatlas-operon-121,BSGatlas-gene-353;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-214 basu168 BSGatlas exon 298401 299437 . + . ID=BSGatlas-transcript-290_exon;Parent=BSGatlas-transcript-290 basu168 BSGatlas UTR 298401 298465 . + . ID=BSGatlas-5'UTR-168;Parent=BSGatlas-transcript-290;comment="5'UTR" basu168 BSGatlas TSS 298401 298401 . + . ID=BSGatlas-TSS-214;color=#FF0000;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 298466 299398 . + . ID=BSGatlas-gene-353;color=#1E90FF;Name=yccK;locus_tag=BSU02770,BSU_02770;Parent=BSGatlas-operon-121 basu168 BSGatlas CDS 298466 299398 . + 0 ID=BSGatlas-gene-353_transcribed;color=#1E90FF;Name=yccK;Parent=BSGatlas-transcript-290;comment="putative ion channel associated aldo-ketoreductase";synonyms="yccK,yzaE";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters";ec="1.-.-.-";go="GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-353 basu168 BSGatlas operon 299393 300502 . - . ID=BSGatlas-operon-122;color=#B32496 basu168 BSGatlas transcript 299393 300502 . - . ID=BSGatlas-transcript-291;color=#B37924;Parent=BSGatlas-operon-122,BSGatlas-gene-354;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 299393 300502 . - . ID=BSGatlas-transcript-291_exon;Parent=BSGatlas-transcript-291 basu168 BSGatlas UTR 299393 299437 . - . ID=BSGatlas-3'UTR-91;Parent=BSGatlas-transcript-291;comment="3'UTR" basu168 BSGatlas terminator 299393 299427 . - . ID=BSGatlas-terminator-148;Parent=BSGatlas-transcript-291;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 299399 299437 . + . ID=BSGatlas-3'UTR-92;Parent=BSGatlas-transcript-290;comment="3'UTR" basu168 BSGatlas terminator 299403 299437 . + . ID=BSGatlas-terminator-149;Parent=BSGatlas-transcript-290;comment="Based on: BsubCyc,DBTBS, Energy: -8.6[kcal/mol]" basu168 BSGatlas gene 299438 300502 . - . ID=BSGatlas-gene-354;color=#3474B3;Name=ycdA;locus_tag=BSU02780,BSU_02780;Parent=BSGatlas-operon-122 basu168 BSGatlas CDS 299438 300502 . - 0 ID=BSGatlas-gene-354_transcribed;color=#3474B3;Name=ycdA;Parent=BSGatlas-transcript-291;comment="lipoprotein involved in swarming behaviour";synonyms="ycdA";subtiwiki_category="SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.1 Motility and chemotaxis,SW 4.1.1.4 Motility and chemotaxis/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005615 extracellular space,GO:0005886 plasma membrane,GO:0016020 membrane";derives_from=BSGatlas-gene-354 basu168 BSGatlas gene 300522 300681 . - . ID=BSGatlas-gene-355;color=#6B6B6B;Name=novel basu168 BSGatlas riboswitch 300522 300681 . - . ID=BSGatlas-gene-355_transcribed;color=#6B6B6B;Name=novel;derives_from=BSGatlas-gene-355 basu168 BSGatlas operon 300525 302299 . - . ID=BSGatlas-operon-123;color=#B32496 basu168 BSGatlas transcript 300525 302299 . - . ID=BSGatlas-transcript-293;color=#B37924;Parent=BSGatlas-operon-123,BSGatlas-gene-356;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-216 basu168 BSGatlas exon 300525 302299 . - . ID=BSGatlas-transcript-293_exon;Parent=BSGatlas-transcript-293 basu168 BSGatlas transcript 300525 300698 . - . ID=BSGatlas-transcript-292;color=#B37924;Parent=BSGatlas-operon-123,BSGatlas-gene-356;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-215 basu168 BSGatlas exon 300525 300698 . - . ID=BSGatlas-transcript-292_exon;Parent=BSGatlas-transcript-292 basu168 BSGatlas gene 300525 300656 . - . ID=BSGatlas-gene-356;color=#3474B3;locus_tag=BSU_02785;Parent=BSGatlas-operon-123 basu168 BSGatlas CDS 300525 300656 . - 0 ID=BSGatlas-gene-356_transcribed;color=#3474B3;Parent=BSGatlas-transcript-292,BSGatlas-transcript-293;comment="hypothetical protein";derives_from=BSGatlas-gene-356 basu168 BSGatlas UTR 300657 302299 . - . ID=BSGatlas-5'UTR-170;Parent=BSGatlas-transcript-293;comment="5'UTR" basu168 BSGatlas UTR 300657 300698 . - . ID=BSGatlas-5'UTR-169;Parent=BSGatlas-transcript-292;comment="5'UTR" basu168 BSGatlas TSS 300698 300698 . - . ID=BSGatlas-TSS-215;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 300830 302391 . + . ID=BSGatlas-operon-124;color=#FF00CC basu168 BSGatlas transcript 300830 302391 . + . ID=BSGatlas-transcript-294;color=#FF9900;Parent=BSGatlas-operon-124,BSGatlas-gene-357;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 300830 302391 . + . ID=BSGatlas-transcript-294_exon;Parent=BSGatlas-transcript-294 basu168 BSGatlas gene 300830 302248 . + . ID=BSGatlas-gene-357;color=#1E90FF;Name=ycdB;locus_tag=BSU02790,BSU_02790;Parent=BSGatlas-operon-124 basu168 BSGatlas CDS 300830 302248 . + 0 ID=BSGatlas-gene-357_transcribed;color=#1E90FF;Name=ycdB;Parent=BSGatlas-transcript-294;comment="conserved protein of unknown function";synonyms="ycdB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-357 basu168 BSGatlas UTR 302249 302391 . + . ID=BSGatlas-3'UTR-93;Parent=BSGatlas-transcript-294;comment="3'UTR" basu168 BSGatlas TSS 302299 302299 . - . ID=BSGatlas-TSS-216;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 302341 302391 . + . ID=BSGatlas-terminator-150;Parent=BSGatlas-transcript-294;comment="Based on: BsubCyc,DBTBS, Energy: -19.4[kcal/mol]" basu168 BSGatlas operon 302355 303796 . + . ID=BSGatlas-operon-125;color=#FF00CC basu168 BSGatlas transcript 302355 303796 . + . ID=BSGatlas-transcript-295;color=#FF9900;Parent=BSGatlas-operon-125,BSGatlas-gene-358;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-217 basu168 BSGatlas exon 302355 303796 . + . ID=BSGatlas-transcript-295_exon;Parent=BSGatlas-transcript-295 basu168 BSGatlas UTR 302355 302434 . + . ID=BSGatlas-5'UTR-171;Parent=BSGatlas-transcript-295;comment="5'UTR" basu168 BSGatlas TSS 302355 302355 . + . ID=BSGatlas-TSS-217;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 302435 303796 . + . ID=BSGatlas-gene-358;color=#1E90FF;Name=ycdC;locus_tag=BSU02800,BSU_02800;Parent=BSGatlas-operon-125 basu168 BSGatlas CDS 302435 303796 . + 0 ID=BSGatlas-gene-358_transcribed;color=#1E90FF;Name=ycdC;Parent=BSGatlas-transcript-295;comment="conserved protein of unknown function";synonyms="ycdC";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-358 basu168 BSGatlas operon 303804 304390 . - . ID=BSGatlas-operon-126;color=#B32496 basu168 BSGatlas transcript 303804 304390 . - . ID=BSGatlas-transcript-296;color=#B37924;Parent=BSGatlas-operon-126,BSGatlas-gene-359;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-219 basu168 BSGatlas exon 303804 304390 . - . ID=BSGatlas-transcript-296_exon;Parent=BSGatlas-transcript-296 basu168 BSGatlas gene 303804 304307 . - . ID=BSGatlas-gene-359;color=#3474B3;Name=cwlK;locus_tag=BSU02810,BSU_02810;Parent=BSGatlas-operon-126 basu168 BSGatlas CDS 303804 304307 . - 0 ID=BSGatlas-gene-359_transcribed;color=#3474B3;Name=cwlK;Parent=BSGatlas-transcript-296;comment="murein L,D:-endopeptidase";synonyms="cwlK,ycdD";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.1 Autolysis,SW 1.1.3.4 Endopeptidases,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.4.-.-,EC-3.4";go="GO:0005886 plasma membrane,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-359 basu168 BSGatlas UTR 304308 304390 . - . ID=BSGatlas-5'UTR-172;Parent=BSGatlas-transcript-296;comment="5'UTR" basu168 BSGatlas operon 304379 305595 . + . ID=BSGatlas-operon-127;color=#FF00CC basu168 BSGatlas transcript 304379 305595 . + . ID=BSGatlas-transcript-297;color=#FF9900;Parent=BSGatlas-operon-127,BSGatlas-gene-360;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-218 basu168 BSGatlas exon 304379 305595 . + . ID=BSGatlas-transcript-297_exon;Parent=BSGatlas-transcript-297 basu168 BSGatlas UTR 304379 304429 . + . ID=BSGatlas-5'UTR-173;Parent=BSGatlas-transcript-297;comment="5'UTR" basu168 BSGatlas TSS 304379 304379 . + . ID=BSGatlas-TSS-218;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 304390 304390 . - . ID=BSGatlas-TSS-219;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 304430 305551 . + . ID=BSGatlas-gene-360;color=#1E90FF;Name=rapJ;locus_tag=BSU02820,BSU_02820;Parent=BSGatlas-operon-127 basu168 BSGatlas CDS 304430 305551 . + 0 ID=BSGatlas-gene-360_transcribed;color=#1E90FF;Name=rapJ;Parent=BSGatlas-transcript-297;comment="response regulator aspartate phosphatase";synonyms="rapJ,ycdE";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.2 Response regulator aspartate phosphatase";go="GO:0004721 phosphoprotein phosphatase activity,GO:0008152 metabolic process,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-360 basu168 BSGatlas UTR 305552 305595 . + . ID=BSGatlas-3'UTR-94;Parent=BSGatlas-transcript-297;comment="3'UTR" basu168 BSGatlas terminator 305553 305595 . + . ID=BSGatlas-terminator-151;Parent=BSGatlas-transcript-297;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.4[kcal/mol]" basu168 BSGatlas operon 305616 308163 . + . ID=BSGatlas-operon-128;color=#FF00CC basu168 BSGatlas transcript 305616 308163 . + . ID=BSGatlas-transcript-299;color=#FF9900;Parent=BSGatlas-operon-128,BSGatlas-gene-361,BSGatlas-gene-362;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-220 basu168 BSGatlas exon 305616 308163 . + . ID=BSGatlas-transcript-299_exon;Parent=BSGatlas-transcript-299 basu168 BSGatlas transcript 305616 308144 . + . ID=BSGatlas-transcript-298;color=#FF9900;Parent=BSGatlas-operon-128,BSGatlas-gene-361,BSGatlas-gene-362;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-220 basu168 BSGatlas exon 305616 308144 . + . ID=BSGatlas-transcript-298_exon;Parent=BSGatlas-transcript-298 basu168 BSGatlas UTR 305616 305657 . + . ID=BSGatlas-5'UTR-174;Parent=BSGatlas-transcript-298,BSGatlas-transcript-299;comment="5'UTR" basu168 BSGatlas TSS 305616 305616 . + . ID=BSGatlas-TSS-220;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 305643 305687 . - . ID=BSGatlas-terminator-152;comment="Based on: Nicolas et al. downshift, Energy: -5.8[kcal/mol]" basu168 BSGatlas gene 305658 306434 . + . ID=BSGatlas-gene-361;color=#1E90FF;Name=ycdF;locus_tag=BSU02830,BSU_02830;Parent=BSGatlas-operon-128 basu168 BSGatlas CDS 305658 306434 . + 0 ID=BSGatlas-gene-361_transcribed;color=#1E90FF;Name=ycdF;Parent=BSGatlas-transcript-298,BSGatlas-transcript-299;comment="putative oxidoreductase";synonyms="ycdF";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.1.1.-,1.1.1.47";go="GO:0006950 response to stress,GO:0008152 metabolic process,GO:0016491 oxidoreductase activity,GO:0047936 glucose 1-dehydrogenase [NAD(P)] activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-361 basu168 BSGatlas UTR 306435 306458 . + . ID=BSGatlas-internal_UTR-128;Parent=BSGatlas-transcript-298,BSGatlas-transcript-299;comment="internal_UTR" basu168 BSGatlas gene 306459 308144 . + . ID=BSGatlas-gene-362;color=#1E90FF;Name=ycdG;locus_tag=BSU02840,BSU_02840;Parent=BSGatlas-operon-128 basu168 BSGatlas CDS 306459 308144 . + 0 ID=BSGatlas-gene-362_transcribed;color=#1E90FF;Name=ycdG;Parent=BSGatlas-transcript-298,BSGatlas-transcript-299;comment="putative oligo-carbohydrate hydrolase";synonyms="ycdG";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.2.1.10";go="GO:0003824 catalytic activity,GO:0004574 oligo-1,6-glucosidase activity,GO:0005737 cytoplasm,GO:0005975 carbohydrate metabolic process,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds,GO:0043169 cation binding";derives_from=BSGatlas-gene-362 basu168 BSGatlas operon 307459 310889 . + . ID=BSGatlas-operon-129;color=#FF00CC basu168 BSGatlas transcript 307459 310889 . + . ID=BSGatlas-transcript-301;color=#FF9900;Parent=BSGatlas-operon-129,BSGatlas-gene-363,BSGatlas-gene-364,BSGatlas-gene-365;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-221 basu168 BSGatlas exon 307459 310889 . + . ID=BSGatlas-transcript-301_exon;Parent=BSGatlas-transcript-301 basu168 BSGatlas transcript 307459 309291 . + . ID=BSGatlas-transcript-300;color=#FF9900;Parent=BSGatlas-operon-129,BSGatlas-gene-363;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-221 basu168 BSGatlas exon 307459 309291 . + . ID=BSGatlas-transcript-300_exon;Parent=BSGatlas-transcript-300 basu168 BSGatlas UTR 307459 308331 . + . ID=BSGatlas-5'UTR-175;Parent=BSGatlas-transcript-300,BSGatlas-transcript-301;comment="5'UTR" basu168 BSGatlas TSS 307459 307459 . + . ID=BSGatlas-TSS-221;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 307503 307547 . + . ID=BSGatlas-terminator-153;Parent=BSGatlas-transcript-298;comment="Based on: Nicolas et al. downshift, Energy: -10.2[kcal/mol]" basu168 BSGatlas terminator 308119 308163 . + . ID=BSGatlas-terminator-154;Parent=BSGatlas-transcript-299;comment="Based on: Nicolas et al. downshift, Energy: -10.2[kcal/mol]" basu168 BSGatlas UTR 308145 308163 . + . ID=BSGatlas-3'UTR-95;Parent=BSGatlas-transcript-299;comment="3'UTR" basu168 BSGatlas transcript 308272 310889 . + . ID=BSGatlas-transcript-303;color=#FF9900;Parent=BSGatlas-operon-129,BSGatlas-gene-363,BSGatlas-gene-364,BSGatlas-gene-365;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-222 basu168 BSGatlas exon 308272 310889 . + . ID=BSGatlas-transcript-303_exon;Parent=BSGatlas-transcript-303 basu168 BSGatlas transcript 308272 309291 . + . ID=BSGatlas-transcript-302;color=#FF9900;Parent=BSGatlas-operon-129,BSGatlas-gene-363;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-222 basu168 BSGatlas exon 308272 309291 . + . ID=BSGatlas-transcript-302_exon;Parent=BSGatlas-transcript-302 basu168 BSGatlas UTR 308272 308331 . + . ID=BSGatlas-5'UTR-176;Parent=BSGatlas-transcript-302,BSGatlas-transcript-303;comment="5'UTR" basu168 BSGatlas TSS 308272 308272 . + . ID=BSGatlas-TSS-222;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12426338,17962296" basu168 BSGatlas gene 308332 309291 . + . ID=BSGatlas-gene-363;color=#1E90FF;Name=znuA;locus_tag=BSU02850,BSU_02850;Parent=BSGatlas-operon-129 basu168 BSGatlas CDS 308332 309291 . + 0 ID=BSGatlas-gene-363_transcribed;color=#1E90FF;Name=znuA;Parent=BSGatlas-transcript-300,BSGatlas-transcript-301,BSGatlas-transcript-302,BSGatlas-transcript-303;comment="Zn(II)-binding lipoprotein";synonyms="adcA,ycdH,znuA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.6 Uptake of ions,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.3 Zinc,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006829 zinc ion transport,GO:0007155 cell adhesion,GO:0016020 membrane,GO:0030001 metal ion transport,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-363 basu168 BSGatlas transcript 308911 310889 . + . ID=BSGatlas-transcript-304;color=#FF9900;Parent=BSGatlas-operon-129,BSGatlas-gene-364,BSGatlas-gene-365;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-223 basu168 BSGatlas exon 308911 310889 . + . ID=BSGatlas-transcript-304_exon;Parent=BSGatlas-transcript-304 basu168 BSGatlas UTR 308911 309346 . + . ID=BSGatlas-5'UTR-177;Parent=BSGatlas-transcript-304;comment="5'UTR" basu168 BSGatlas TSS 308911 308911 . + . ID=BSGatlas-TSS-223;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 309241 309285 . + . ID=BSGatlas-terminator-155;Parent=BSGatlas-transcript-300,BSGatlas-transcript-302;comment="Based on: Nicolas et al. downshift, Energy: -15.9[kcal/mol]" basu168 BSGatlas UTR 309292 309346 . + . ID=BSGatlas-internal_UTR-129;Parent=BSGatlas-transcript-301,BSGatlas-transcript-303;comment="internal_UTR" basu168 BSGatlas gene 309347 310042 . + . ID=BSGatlas-gene-364;color=#1E90FF;Name=znuC;locus_tag=BSU02860,BSU_02860;Parent=BSGatlas-operon-129 basu168 BSGatlas CDS 309347 310042 . + 0 ID=BSGatlas-gene-364_transcribed;color=#1E90FF;Name=znuC;Parent=BSGatlas-transcript-301,BSGatlas-transcript-303,BSGatlas-transcript-304;comment="Zn(II) transporter (ATP-binding protein)";synonyms="adcC,ycdI,znuC";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.6 Uptake of ions,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.3 Zinc,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.3.-";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006829 zinc ion transport,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-364 basu168 BSGatlas gene 310000 310842 . + . ID=BSGatlas-gene-365;color=#1E90FF;Name=znuB;locus_tag=BSU02870,BSU_02870;Parent=BSGatlas-operon-129 basu168 BSGatlas CDS 310000 310842 . + 0 ID=BSGatlas-gene-365_transcribed;color=#1E90FF;Name=znuB;Parent=BSGatlas-transcript-301,BSGatlas-transcript-303,BSGatlas-transcript-304;comment="high affinity Zn(II) ABC transporter (permease)";synonyms="adcB,yceA,znuB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.6 Uptake of ions,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.3 Zinc,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006829 zinc ion transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0042626 ATPase activity, coupled to transmembrane movement of substances,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-365 basu168 BSGatlas UTR 310843 310889 . + . ID=BSGatlas-3'UTR-96;Parent=BSGatlas-transcript-301,BSGatlas-transcript-303,BSGatlas-transcript-304;comment="3'UTR" basu168 BSGatlas terminator 310846 310889 . + . ID=BSGatlas-terminator-156;Parent=BSGatlas-transcript-301,BSGatlas-transcript-303,BSGatlas-transcript-304;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.4[kcal/mol]" basu168 BSGatlas operon 310880 311915 . - . ID=BSGatlas-operon-130;color=#B32496 basu168 BSGatlas transcript 310880 311915 . - . ID=BSGatlas-transcript-305;color=#B37924;Parent=BSGatlas-operon-130,BSGatlas-gene-366;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-225 basu168 BSGatlas exon 310880 311915 . - . ID=BSGatlas-transcript-305_exon;Parent=BSGatlas-transcript-305 basu168 BSGatlas gene 310880 311875 . - . ID=BSGatlas-gene-366;color=#3474B3;Name=yceB;locus_tag=BSU02880,BSU_02880;Parent=BSGatlas-operon-130 basu168 BSGatlas CDS 310880 311875 . - 0 ID=BSGatlas-gene-366_transcribed;color=#3474B3;Name=yceB;Parent=BSGatlas-transcript-305;comment="putative luciferase-like monooxygenase";synonyms="yceB";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";go="GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-366 basu168 BSGatlas operon 311859 317651 . + . ID=BSGatlas-operon-131;color=#FF00CC basu168 BSGatlas transcript 311859 317651 . + . ID=BSGatlas-transcript-308;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-224 basu168 BSGatlas exon 311859 317651 . + . ID=BSGatlas-transcript-308_exon;Parent=BSGatlas-transcript-308 basu168 BSGatlas transcript 311859 317603 . + . ID=BSGatlas-transcript-307;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-224 basu168 BSGatlas exon 311859 317603 . + . ID=BSGatlas-transcript-307_exon;Parent=BSGatlas-transcript-307 basu168 BSGatlas transcript 311859 314798 . + . ID=BSGatlas-transcript-306;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-224 basu168 BSGatlas exon 311859 314798 . + . ID=BSGatlas-transcript-306_exon;Parent=BSGatlas-transcript-306 basu168 BSGatlas UTR 311859 312158 . + . ID=BSGatlas-5'UTR-178;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308;comment="5'UTR" basu168 BSGatlas TSS 311859 311859 . + . ID=BSGatlas-TSS-224;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 311876 311915 . - . ID=BSGatlas-5'UTR-179;Parent=BSGatlas-transcript-305;comment="5'UTR" basu168 BSGatlas TSS 311915 311915 . - . ID=BSGatlas-TSS-225;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 312067 317651 . + . ID=BSGatlas-transcript-311;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-226 basu168 BSGatlas exon 312067 317651 . + . ID=BSGatlas-transcript-311_exon;Parent=BSGatlas-transcript-311 basu168 BSGatlas transcript 312067 317603 . + . ID=BSGatlas-transcript-310;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-226 basu168 BSGatlas exon 312067 317603 . + . ID=BSGatlas-transcript-310_exon;Parent=BSGatlas-transcript-310 basu168 BSGatlas transcript 312067 314798 . + . ID=BSGatlas-transcript-309;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-226 basu168 BSGatlas exon 312067 314798 . + . ID=BSGatlas-transcript-309_exon;Parent=BSGatlas-transcript-309 basu168 BSGatlas UTR 312067 312158 . + . ID=BSGatlas-5'UTR-180;Parent=BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311;comment="5'UTR" basu168 BSGatlas TSS 312067 312067 . + . ID=BSGatlas-TSS-226;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 11866510,17962296" basu168 BSGatlas transcript 312080 317651 . + . ID=BSGatlas-transcript-314;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-227 basu168 BSGatlas exon 312080 317651 . + . ID=BSGatlas-transcript-314_exon;Parent=BSGatlas-transcript-314 basu168 BSGatlas transcript 312080 317603 . + . ID=BSGatlas-transcript-313;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370,BSGatlas-gene-371,BSGatlas-gene-372;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-227 basu168 BSGatlas exon 312080 317603 . + . ID=BSGatlas-transcript-313_exon;Parent=BSGatlas-transcript-313 basu168 BSGatlas transcript 312080 314798 . + . ID=BSGatlas-transcript-312;color=#FF9900;Parent=BSGatlas-operon-131,BSGatlas-gene-367,BSGatlas-gene-368,BSGatlas-gene-369,BSGatlas-gene-370;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-227 basu168 BSGatlas exon 312080 314798 . + . ID=BSGatlas-transcript-312_exon;Parent=BSGatlas-transcript-312 basu168 BSGatlas UTR 312080 312158 . + . ID=BSGatlas-5'UTR-181;Parent=BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="5'UTR" basu168 BSGatlas TSS 312080 312080 . + . ID=BSGatlas-TSS-227;color=#FF0000;comment="Simga: W, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 11866510,12207695,17962296" basu168 BSGatlas gene 312159 312758 . + . ID=BSGatlas-gene-367;color=#1E90FF;Name=yceC;locus_tag=BSU02890,BSU_02890;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 312159 312758 . + 0 ID=BSGatlas-gene-367_transcribed;color=#1E90FF;Name=yceC;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative stress adaptation protein (telluriteresistance)";synonyms="yceC";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.12 Resistance against toxic metals/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";go="GO:0005737 cytoplasm,GO:0006950 response to stress";derives_from=BSGatlas-gene-367 basu168 BSGatlas UTR 312759 312779 . + . ID=BSGatlas-internal_UTR-130;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="internal_UTR" basu168 BSGatlas gene 312780 313361 . + . ID=BSGatlas-gene-368;color=#1E90FF;Name=yceD;locus_tag=BSU02900,BSU_02900;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 312780 313361 . + 0 ID=BSGatlas-gene-368_transcribed;color=#1E90FF;Name=yceD;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative stress adaptation protein (telluriteresistance)";synonyms="yceD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.12 Resistance against toxic metals/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0006950 response to stress";derives_from=BSGatlas-gene-368 basu168 BSGatlas UTR 313362 313395 . + . ID=BSGatlas-internal_UTR-131;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="internal_UTR" basu168 BSGatlas gene 313396 313974 . + . ID=BSGatlas-gene-369;color=#1E90FF;Name=yceE;locus_tag=BSU02910,BSU_02910;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 313396 313974 . + 0 ID=BSGatlas-gene-369_transcribed;color=#1E90FF;Name=yceE;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative stress adaptation protein (telluriteresistance)";synonyms="yceE";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.12 Resistance against toxic metals/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0006950 response to stress";derives_from=BSGatlas-gene-369 basu168 BSGatlas UTR 313975 314024 . + . ID=BSGatlas-internal_UTR-132;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="internal_UTR" basu168 BSGatlas gene 314025 314798 . + . ID=BSGatlas-gene-370;color=#1E90FF;Name=yceF;locus_tag=BSU02920,BSU_02920;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 314025 314798 . + 0 ID=BSGatlas-gene-370_transcribed;color=#1E90FF;Name=yceF;Parent=BSGatlas-transcript-306,BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-309,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-312,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative stress adaptation transporter(tellurite resistance)";synonyms="yceF";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.12 Resistance against toxic metals/ based on similarity,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-370 basu168 BSGatlas terminator 314763 314807 . + . ID=BSGatlas-terminator-157;Parent=BSGatlas-transcript-306,BSGatlas-transcript-309,BSGatlas-transcript-312;comment="Based on: Nicolas et al. downshift, Energy: -8.2[kcal/mol]" basu168 BSGatlas UTR 314799 314882 . + . ID=BSGatlas-internal_UTR-133;Parent=BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="internal_UTR" basu168 BSGatlas gene 314883 316496 . + . ID=BSGatlas-gene-371;color=#1E90FF;Name=yceG;locus_tag=BSU02930,BSU_02930;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 314883 316496 . + 0 ID=BSGatlas-gene-371_transcribed;color=#1E90FF;Name=yceG;Parent=BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative toxic compound adaptation protein(tellurite resistance)";synonyms="yceG";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";derives_from=BSGatlas-gene-371 basu168 BSGatlas gene 316512 317603 . + . ID=BSGatlas-gene-372;color=#1E90FF;Name=yceH;locus_tag=BSU02940,BSU_02940;Parent=BSGatlas-operon-131 basu168 BSGatlas CDS 316512 317603 . + 0 ID=BSGatlas-gene-372_transcribed;color=#1E90FF;Name=yceH;Parent=BSGatlas-transcript-307,BSGatlas-transcript-308,BSGatlas-transcript-310,BSGatlas-transcript-311,BSGatlas-transcript-313,BSGatlas-transcript-314;comment="putative reactive oxygen species resistanceprotein";synonyms="yceH";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)";derives_from=BSGatlas-gene-372 basu168 BSGatlas terminator 317555 317599 . + . ID=BSGatlas-terminator-158;Parent=BSGatlas-transcript-307,BSGatlas-transcript-310,BSGatlas-transcript-313;comment="Based on: Nicolas et al. downshift, Energy: -17.5[kcal/mol]" basu168 BSGatlas terminator 317604 317651 . + . ID=BSGatlas-terminator-159;Parent=BSGatlas-transcript-308,BSGatlas-transcript-311,BSGatlas-transcript-314;comment="Based on: BsubCyc,DBTBS, Energy: -22.6[kcal/mol]" basu168 BSGatlas UTR 317604 317651 . + . ID=BSGatlas-3'UTR-97;Parent=BSGatlas-transcript-308,BSGatlas-transcript-311,BSGatlas-transcript-314;comment="3'UTR" basu168 BSGatlas operon 317687 318927 . + . ID=BSGatlas-operon-132;color=#FF00CC basu168 BSGatlas transcript 317687 318927 . + . ID=BSGatlas-transcript-315;color=#FF9900;Parent=BSGatlas-operon-132,BSGatlas-gene-373;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-228 basu168 BSGatlas exon 317687 318927 . + . ID=BSGatlas-transcript-315_exon;Parent=BSGatlas-transcript-315 basu168 BSGatlas UTR 317687 317724 . + . ID=BSGatlas-5'UTR-182;Parent=BSGatlas-transcript-315;comment="5'UTR" basu168 BSGatlas TSS 317687 317687 . + . ID=BSGatlas-TSS-228;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 317725 318927 . + . ID=BSGatlas-gene-373;color=#1E90FF;Name=niaP;locus_tag=BSU02950,BSU_02950;Parent=BSGatlas-operon-132 basu168 BSGatlas CDS 317725 318927 . + 0 ID=BSGatlas-gene-373_transcribed;color=#1E90FF;Name=niaP;Parent=BSGatlas-transcript-315;comment="niacin permease";synonyms="niaP,yceI";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.7 Transporter for cofactors,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.11 Biosynthesis of NAD(P),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-373 basu168 BSGatlas terminator 318885 318929 . + . ID=BSGatlas-terminator-160;Parent=BSGatlas-transcript-315;comment="Based on: Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas gene 319011 319078 . + . ID=BSGatlas-gene-374;color=#00FF00;Name=Bacillaceae-1 basu168 BSGatlas sRNA 319011 319078 . + . ID=BSGatlas-gene-374_transcribed;color=#00FF00;Name=Bacillaceae-1;derives_from=BSGatlas-gene-374 basu168 BSGatlas terminator 319173 319217 . - . ID=BSGatlas-terminator-161;Parent=BSGatlas-transcript-316;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas operon 319180 320352 . - . ID=BSGatlas-operon-133;color=#B32496 basu168 BSGatlas gene 319180 320352 . - . ID=BSGatlas-gene-375;color=#3474B3;Name=yceJ;locus_tag=BSU02960,BSU_02960;Parent=BSGatlas-operon-133 basu168 BSGatlas transcript 319180 320352 . - . ID=BSGatlas-transcript-316;color=#B37924;Parent=BSGatlas-operon-133,BSGatlas-gene-375;comment="Based on: BSGatlas" basu168 BSGatlas CDS 319180 320352 . - 0 ID=BSGatlas-gene-375_transcribed;color=#3474B3;Name=yceJ;Parent=BSGatlas-transcript-316;comment="putative carbohydrate transporter (possiblyexporter)";synonyms="yceJ";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-375 basu168 BSGatlas exon 319180 320352 . - . ID=BSGatlas-transcript-316_exon;Parent=BSGatlas-transcript-316 basu168 BSGatlas operon 320421 320723 . - . ID=BSGatlas-operon-134;color=#B32496 basu168 BSGatlas gene 320421 320723 . - . ID=BSGatlas-gene-376;color=#3474B3;Name=yceK;locus_tag=BSU02970,BSU_02970;Parent=BSGatlas-operon-134 basu168 BSGatlas transcript 320421 320723 . - . ID=BSGatlas-transcript-317;color=#B37924;Parent=BSGatlas-operon-134,BSGatlas-gene-376;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-229 basu168 BSGatlas CDS 320421 320723 . - 0 ID=BSGatlas-gene-376_transcribed;color=#3474B3;Name=yceK;Parent=BSGatlas-transcript-317;comment="putative transcriptional regulator (ArsRfamily)";synonyms="yceK";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-376 basu168 BSGatlas exon 320421 320723 . - . ID=BSGatlas-transcript-317_exon;Parent=BSGatlas-transcript-317 basu168 BSGatlas terminator 320427 320471 . - . ID=BSGatlas-terminator-162;Parent=BSGatlas-transcript-317;comment="Based on: Nicolas et al. downshift, Energy: -4.8[kcal/mol]" basu168 BSGatlas TSS 320725 320725 . - . ID=BSGatlas-TSS-229;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 320952 324042 . + . ID=BSGatlas-operon-135;color=#FF00CC basu168 BSGatlas transcript 320952 324042 . + . ID=BSGatlas-transcript-319;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-230 basu168 BSGatlas exon 320952 324042 . + . ID=BSGatlas-transcript-319_exon;Parent=BSGatlas-transcript-319 basu168 BSGatlas transcript 320952 324000 . + . ID=BSGatlas-transcript-318;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-230 basu168 BSGatlas exon 320952 324000 . + . ID=BSGatlas-transcript-318_exon;Parent=BSGatlas-transcript-318 basu168 BSGatlas UTR 320952 321012 . + . ID=BSGatlas-5'UTR-183;Parent=BSGatlas-transcript-318,BSGatlas-transcript-319;comment="5'UTR" basu168 BSGatlas TSS 320952 320952 . + . ID=BSGatlas-TSS-230;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7622480" basu168 BSGatlas transcript 320989 324042 . + . ID=BSGatlas-transcript-321;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-231 basu168 BSGatlas exon 320989 324042 . + . ID=BSGatlas-transcript-321_exon;Parent=BSGatlas-transcript-321 basu168 BSGatlas transcript 320989 324000 . + . ID=BSGatlas-transcript-320;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-231 basu168 BSGatlas exon 320989 324000 . + . ID=BSGatlas-transcript-320_exon;Parent=BSGatlas-transcript-320 basu168 BSGatlas UTR 320989 321012 . + . ID=BSGatlas-5'UTR-184;Parent=BSGatlas-transcript-320,BSGatlas-transcript-321;comment="5'UTR" basu168 BSGatlas TSS 320989 320989 . + . ID=BSGatlas-TSS-231;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 17962296,23175650,7622480" basu168 BSGatlas transcript 320990 324042 . + . ID=BSGatlas-transcript-323;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-232 basu168 BSGatlas exon 320990 324042 . + . ID=BSGatlas-transcript-323_exon;Parent=BSGatlas-transcript-323 basu168 BSGatlas transcript 320990 324000 . + . ID=BSGatlas-transcript-322;color=#FF9900;Parent=BSGatlas-operon-135,BSGatlas-gene-377,BSGatlas-gene-378,BSGatlas-gene-379;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-232 basu168 BSGatlas exon 320990 324000 . + . ID=BSGatlas-transcript-322_exon;Parent=BSGatlas-transcript-322 basu168 BSGatlas UTR 320990 321012 . + . ID=BSGatlas-5'UTR-185;Parent=BSGatlas-transcript-322,BSGatlas-transcript-323;comment="5'UTR" basu168 BSGatlas TSS 320990 320990 . + . ID=BSGatlas-TSS-232;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 7622480" basu168 BSGatlas terminator 320999 321043 . - . ID=BSGatlas-terminator-163;comment="Based on: Nicolas et al. downshift, Energy: -4.8[kcal/mol]" basu168 BSGatlas gene 321013 322269 . + . ID=BSGatlas-gene-377;color=#1E90FF;Name=opuAA;locus_tag=BSU02980,BSU_02980;Parent=BSGatlas-operon-135 basu168 BSGatlas CDS 321013 322269 . + 0 ID=BSGatlas-gene-377_transcribed;color=#1E90FF;Name=opuAA;Parent=BSGatlas-transcript-318,BSGatlas-transcript-319,BSGatlas-transcript-320,BSGatlas-transcript-321,BSGatlas-transcript-322,BSGatlas-transcript-323;comment="L-proline betaine and betonicine ABC transporter(ATP-binding protein)";synonyms="opuAA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.6 Coping with hyper-osmotic stress,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.3.32";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0006865 amino acid transport,GO:0008152 metabolic process,GO:0015418 quaternary-ammonium-compound-transporting ATPase activity,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity,GO:0030554 adenyl nucleotide binding,GO:0031460 glycine betaine transport,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-377 basu168 BSGatlas gene 322271 323119 . + . ID=BSGatlas-gene-378;color=#1E90FF;Name=opuAB;locus_tag=BSU02990,BSU_02990;Parent=BSGatlas-operon-135 basu168 BSGatlas CDS 322271 323119 . + 0 ID=BSGatlas-gene-378_transcribed;color=#1E90FF;Name=opuAB;Parent=BSGatlas-transcript-318,BSGatlas-transcript-319,BSGatlas-transcript-320,BSGatlas-transcript-321,BSGatlas-transcript-322,BSGatlas-transcript-323;comment="L-proline betaine and betonicine ABC transporter(permease)";synonyms="opuAB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.6 Coping with hyper-osmotic stress,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-378 basu168 BSGatlas gene 323119 324000 . + . ID=BSGatlas-gene-379;color=#1E90FF;Name=opuAC;locus_tag=BSU03000,BSU_03000;Parent=BSGatlas-operon-135 basu168 BSGatlas CDS 323119 324000 . + 0 ID=BSGatlas-gene-379_transcribed;color=#1E90FF;Name=opuAC;Parent=BSGatlas-transcript-318,BSGatlas-transcript-319,BSGatlas-transcript-320,BSGatlas-transcript-321,BSGatlas-transcript-322,BSGatlas-transcript-323;comment="L-proline betaine and betonicine ABC transporterABC transporter (glycine betaine-binding lipoprotein)";synonyms="opuAC";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.6 Coping with hyper-osmotic stress,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0016020 membrane";derives_from=BSGatlas-gene-379 basu168 BSGatlas terminator 323959 324003 . + . ID=BSGatlas-terminator-164;Parent=BSGatlas-transcript-318,BSGatlas-transcript-320,BSGatlas-transcript-322;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas operon 323994 325266 . - . ID=BSGatlas-operon-136;color=#B32496 basu168 BSGatlas transcript 323994 325266 . - . ID=BSGatlas-transcript-324;color=#B37924;Parent=BSGatlas-operon-136,BSGatlas-gene-380;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-233 basu168 BSGatlas exon 323994 325266 . - . ID=BSGatlas-transcript-324_exon;Parent=BSGatlas-transcript-324 basu168 BSGatlas UTR 323994 324037 . - . ID=BSGatlas-3'UTR-98;Parent=BSGatlas-transcript-324;comment="3'UTR" basu168 BSGatlas terminator 323994 324032 . - . ID=BSGatlas-terminator-165;Parent=BSGatlas-transcript-324;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.4[kcal/mol]" basu168 BSGatlas UTR 324001 324042 . + . ID=BSGatlas-3'UTR-99;Parent=BSGatlas-transcript-319,BSGatlas-transcript-321,BSGatlas-transcript-323;comment="3'UTR" basu168 BSGatlas terminator 324004 324042 . + . ID=BSGatlas-terminator-166;Parent=BSGatlas-transcript-319,BSGatlas-transcript-321,BSGatlas-transcript-323;comment="Based on: BsubCyc,DBTBS, Energy: -15.4[kcal/mol]" basu168 BSGatlas gene 324038 325189 . - . ID=BSGatlas-gene-380;color=#3474B3;Name=amhX;locus_tag=BSU03010,BSU_03010;Parent=BSGatlas-operon-136 basu168 BSGatlas CDS 324038 325189 . - 0 ID=BSGatlas-gene-380_transcribed;color=#3474B3;Name=amhX;Parent=BSGatlas-transcript-324;comment="putative amidohydrolase";synonyms="amhX";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.5.1.-";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-380 basu168 BSGatlas UTR 325190 325266 . - . ID=BSGatlas-5'UTR-186;Parent=BSGatlas-transcript-324;comment="5'UTR" basu168 BSGatlas TSS 325266 325266 . - . ID=BSGatlas-TSS-233;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,8768514" basu168 BSGatlas operon 325280 326818 . + . ID=BSGatlas-operon-137;color=#FF00CC basu168 BSGatlas transcript 325280 326818 . + . ID=BSGatlas-transcript-325;color=#FF9900;Parent=BSGatlas-operon-137,BSGatlas-gene-381;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-234 basu168 BSGatlas exon 325280 326818 . + . ID=BSGatlas-transcript-325_exon;Parent=BSGatlas-transcript-325 basu168 BSGatlas UTR 325280 325338 . + . ID=BSGatlas-5'UTR-187;Parent=BSGatlas-transcript-325;comment="5'UTR" basu168 BSGatlas TSS 325280 325280 . + . ID=BSGatlas-TSS-234;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 325339 326772 . + . ID=BSGatlas-gene-381;color=#1E90FF;Name=ycgA;locus_tag=BSU03020,BSU_03020;Parent=BSGatlas-operon-137 basu168 BSGatlas CDS 325339 326772 . + 0 ID=BSGatlas-gene-381_transcribed;color=#1E90FF;Name=ycgA;Parent=BSGatlas-transcript-325;comment="putative branched chain amino acid permease";synonyms="ycgA";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-381 basu168 BSGatlas operon 326116 329661 . + . ID=BSGatlas-operon-138;color=#FF00CC basu168 BSGatlas transcript 326116 329661 . + . ID=BSGatlas-transcript-327;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-382,BSGatlas-gene-383;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-235 basu168 BSGatlas exon 326116 329661 . + . ID=BSGatlas-transcript-327_exon;Parent=BSGatlas-transcript-327 basu168 BSGatlas transcript 326116 327469 . + . ID=BSGatlas-transcript-326;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-382;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-235 basu168 BSGatlas exon 326116 327469 . + . ID=BSGatlas-transcript-326_exon;Parent=BSGatlas-transcript-326 basu168 BSGatlas UTR 326116 326887 . + . ID=BSGatlas-5'UTR-188;Parent=BSGatlas-transcript-326,BSGatlas-transcript-327;comment="5'UTR" basu168 BSGatlas TSS 326116 326116 . + . ID=BSGatlas-TSS-235;color=#FF0000;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 326773 326818 . + . ID=BSGatlas-3'UTR-100;Parent=BSGatlas-transcript-325;comment="3'UTR" basu168 BSGatlas terminator 326776 326818 . + . ID=BSGatlas-terminator-167;Parent=BSGatlas-transcript-325;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.6[kcal/mol]" basu168 BSGatlas transcript 326846 329661 . + . ID=BSGatlas-transcript-329;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-382,BSGatlas-gene-383;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-236 basu168 BSGatlas exon 326846 329661 . + . ID=BSGatlas-transcript-329_exon;Parent=BSGatlas-transcript-329 basu168 BSGatlas transcript 326846 327469 . + . ID=BSGatlas-transcript-328;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-382;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-236 basu168 BSGatlas exon 326846 327469 . + . ID=BSGatlas-transcript-328_exon;Parent=BSGatlas-transcript-328 basu168 BSGatlas UTR 326846 326887 . + . ID=BSGatlas-5'UTR-189;Parent=BSGatlas-transcript-328,BSGatlas-transcript-329;comment="5'UTR" basu168 BSGatlas TSS 326846 326846 . + . ID=BSGatlas-TSS-236;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 326888 327469 . + . ID=BSGatlas-gene-382;color=#1E90FF;Name=ycgB;locus_tag=BSU03030,BSU_03030;Parent=BSGatlas-operon-138 basu168 BSGatlas CDS 326888 327469 . + 0 ID=BSGatlas-gene-382_transcribed;color=#1E90FF;Name=ycgB;Parent=BSGatlas-transcript-326,BSGatlas-transcript-327,BSGatlas-transcript-328,BSGatlas-transcript-329;comment="putative integral inner membrane protein ofunknown function";synonyms="ycgB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-382 basu168 BSGatlas transcript 327282 329661 . + . ID=BSGatlas-transcript-330;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-383;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-237 basu168 BSGatlas exon 327282 329661 . + . ID=BSGatlas-transcript-330_exon;Parent=BSGatlas-transcript-330 basu168 BSGatlas UTR 327282 327617 . + . ID=BSGatlas-5'UTR-190;Parent=BSGatlas-transcript-330;comment="5'UTR" basu168 BSGatlas TSS 327282 327282 . + . ID=BSGatlas-TSS-237;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 327470 327617 . + . ID=BSGatlas-internal_UTR-134;Parent=BSGatlas-transcript-327,BSGatlas-transcript-329;comment="internal_UTR" basu168 BSGatlas transcript 327497 329661 . + . ID=BSGatlas-transcript-331;color=#FF9900;Parent=BSGatlas-operon-138,BSGatlas-gene-383;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-238 basu168 BSGatlas exon 327497 329661 . + . ID=BSGatlas-transcript-331_exon;Parent=BSGatlas-transcript-331 basu168 BSGatlas UTR 327497 327617 . + . ID=BSGatlas-5'UTR-191;Parent=BSGatlas-transcript-331;comment="5'UTR" basu168 BSGatlas TSS 327497 327497 . + . ID=BSGatlas-TSS-238;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,3123701" basu168 BSGatlas gene 327618 329597 . + . ID=BSGatlas-gene-383;color=#1E90FF;Name=amyE;locus_tag=BSU03040,BSU_03040;Parent=BSGatlas-operon-138 basu168 BSGatlas CDS 327618 329597 . + 0 ID=BSGatlas-gene-383_transcribed;color=#1E90FF;Name=amyE;Parent=BSGatlas-transcript-327,BSGatlas-transcript-329,BSGatlas-transcript-330,BSGatlas-transcript-331;comment="alpha-amylase";synonyms="amyA,amyE";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.23 Utilization of starch/ maltodextrin,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.2.1.1,EC-3.2.1.1;EC-3.2.1";go="GO:0003824 catalytic activity,GO:0004556 alpha-amylase activity,GO:0005576 extracellular region,GO:0005975 carbohydrate metabolic process,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds,GO:0043169 cation binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-383 basu168 BSGatlas UTR 329598 329661 . + . ID=BSGatlas-3'UTR-101;Parent=BSGatlas-transcript-327,BSGatlas-transcript-329,BSGatlas-transcript-330,BSGatlas-transcript-331;comment="3'UTR" basu168 BSGatlas terminator 329621 329661 . + . ID=BSGatlas-terminator-168;Parent=BSGatlas-transcript-327,BSGatlas-transcript-329,BSGatlas-transcript-330,BSGatlas-transcript-331;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas operon 329715 332445 . + . ID=BSGatlas-operon-139;color=#FF00CC basu168 BSGatlas transcript 329715 332445 . + . ID=BSGatlas-transcript-333;color=#FF9900;Parent=BSGatlas-operon-139,BSGatlas-gene-384,BSGatlas-gene-385;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-239 basu168 BSGatlas exon 329715 332445 . + . ID=BSGatlas-transcript-333_exon;Parent=BSGatlas-transcript-333 basu168 BSGatlas transcript 329715 330799 . + . ID=BSGatlas-transcript-332;color=#FF9900;Parent=BSGatlas-operon-139,BSGatlas-gene-384;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-239 basu168 BSGatlas exon 329715 330799 . + . ID=BSGatlas-transcript-332_exon;Parent=BSGatlas-transcript-332 basu168 BSGatlas UTR 329715 329773 . + . ID=BSGatlas-5'UTR-192;Parent=BSGatlas-transcript-332,BSGatlas-transcript-333;comment="5'UTR" basu168 BSGatlas TSS 329715 329715 . + . ID=BSGatlas-TSS-239;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10809684,17962296" basu168 BSGatlas gene 329774 330739 . + . ID=BSGatlas-gene-384;color=#1E90FF;Name=lctE;locus_tag=BSU03050,BSU_03050;Parent=BSGatlas-operon-139 basu168 BSGatlas CDS 329774 330739 . + 0 ID=BSGatlas-gene-384_transcribed;color=#1E90FF;Name=lctE;Parent=BSGatlas-transcript-332,BSGatlas-transcript-333;comment="L-lactate dehydrogenase";synonyms="lctE,ldh";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.1 Carbon core metabolism,SW 2.2.1.5 Overflow metabolism,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.7 Phosphorylation on a Tyr residue";ec="1.1.1.27,EC-1.1.1.27";go="GO:0003824 catalytic activity,GO:0004459 L-lactate dehydrogenase activity,GO:0005737 cytoplasm,GO:0005975 carbohydrate metabolic process,GO:0006096 glycolytic process,GO:0016491 oxidoreductase activity,GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,GO:0044262 cellular carbohydrate metabolic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-384 basu168 BSGatlas UTR 330740 330799 . + . ID=BSGatlas-3'UTR-102;Parent=BSGatlas-transcript-332;comment="3'UTR" basu168 BSGatlas UTR 330740 330770 . + . ID=BSGatlas-internal_UTR-135;Parent=BSGatlas-transcript-333;comment="internal_UTR" basu168 BSGatlas terminator 330755 330799 . + . ID=BSGatlas-terminator-169;Parent=BSGatlas-transcript-332;comment="Based on: Nicolas et al. downshift, Energy: -3.4[kcal/mol]" basu168 BSGatlas gene 330771 332396 . + . ID=BSGatlas-gene-385;color=#1E90FF;Name=lctP;locus_tag=BSU03060,BSU_03060;Parent=BSGatlas-operon-139 basu168 BSGatlas CDS 330771 332396 . + 0 ID=BSGatlas-gene-385_transcribed;color=#1E90FF;Name=lctP;Parent=BSGatlas-transcript-333;comment="L-lactate permease";synonyms="lctP,ycgC";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.4 Transporter for organic acids,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.1 Carbon core metabolism,SW 2.2.1.5 Overflow metabolism,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0005887 integral component of plasma membrane,GO:0006810 transport,GO:0015129 lactate transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0035873 lactate transmembrane transport";derives_from=BSGatlas-gene-385 basu168 BSGatlas operon 332391 334062 . - . ID=BSGatlas-operon-140;color=#B32496 basu168 BSGatlas transcript 332391 334062 . - . ID=BSGatlas-transcript-335;color=#B37924;Parent=BSGatlas-operon-140,BSGatlas-gene-386;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-242 basu168 BSGatlas exon 332391 334062 . - . ID=BSGatlas-transcript-335_exon;Parent=BSGatlas-transcript-335 basu168 BSGatlas transcript 332391 333979 . - . ID=BSGatlas-transcript-334;color=#B37924;Parent=BSGatlas-operon-140,BSGatlas-gene-386;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-240 basu168 BSGatlas exon 332391 333979 . - . ID=BSGatlas-transcript-334_exon;Parent=BSGatlas-transcript-334 basu168 BSGatlas UTR 332391 332440 . - . ID=BSGatlas-3'UTR-103;Parent=BSGatlas-transcript-334,BSGatlas-transcript-335;comment="3'UTR" basu168 BSGatlas terminator 332391 332435 . - . ID=BSGatlas-terminator-170;Parent=BSGatlas-transcript-334,BSGatlas-transcript-335;comment="Based on: BsubCyc,DBTBS, Energy: -19.6[kcal/mol]" basu168 BSGatlas UTR 332397 332445 . + . ID=BSGatlas-3'UTR-104;Parent=BSGatlas-transcript-333;comment="3'UTR" basu168 BSGatlas terminator 332401 332445 . + . ID=BSGatlas-terminator-171;Parent=BSGatlas-transcript-333;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.6[kcal/mol]" basu168 BSGatlas terminator 332437 332481 . - . ID=BSGatlas-terminator-172;Parent=BSGatlas-transcript-336,BSGatlas-transcript-337;comment="Based on: Nicolas et al. downshift, Energy: -15.6[kcal/mol]" basu168 BSGatlas transcript 332441 334062 . - . ID=BSGatlas-transcript-337;color=#B37924;Parent=BSGatlas-operon-140,BSGatlas-gene-386;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-242 basu168 BSGatlas exon 332441 334062 . - . ID=BSGatlas-transcript-337_exon;Parent=BSGatlas-transcript-337 basu168 BSGatlas gene 332441 333979 . - . ID=BSGatlas-gene-386;color=#3474B3;Name=mdr;locus_tag=BSU03070,BSU_03070;Parent=BSGatlas-operon-140 basu168 BSGatlas transcript 332441 333979 . - . ID=BSGatlas-transcript-336;color=#B37924;Parent=BSGatlas-operon-140,BSGatlas-gene-386;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-240 basu168 BSGatlas CDS 332441 333979 . - 0 ID=BSGatlas-gene-386_transcribed;color=#3474B3;Name=mdr;Parent=BSGatlas-transcript-334,BSGatlas-transcript-335,BSGatlas-transcript-336,BSGatlas-transcript-337;comment="multidrug-efflux transporter";synonyms="bmr3,mdr,ycgD";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.11 Other exporters,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0046677 response to antibiotic,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-386 basu168 BSGatlas exon 332441 333979 . - . ID=BSGatlas-transcript-336_exon;Parent=BSGatlas-transcript-336 basu168 BSGatlas TSS 333073 333073 . - . ID=BSGatlas-TSS-240;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 333980 334062 . - . ID=BSGatlas-5'UTR-193;Parent=BSGatlas-transcript-335,BSGatlas-transcript-337;comment="5'UTR" basu168 BSGatlas operon 334027 336123 . + . ID=BSGatlas-operon-141;color=#FF00CC basu168 BSGatlas transcript 334027 336123 . + . ID=BSGatlas-transcript-338;color=#FF9900;Parent=BSGatlas-operon-141,BSGatlas-gene-387,BSGatlas-gene-388,BSGatlas-gene-389;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-241 basu168 BSGatlas exon 334027 336123 . + . ID=BSGatlas-transcript-338_exon;Parent=BSGatlas-transcript-338 basu168 BSGatlas UTR 334027 334091 . + . ID=BSGatlas-5'UTR-194;Parent=BSGatlas-transcript-338;comment="5'UTR" basu168 BSGatlas TSS 334027 334027 . + . ID=BSGatlas-TSS-241;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 334062 334062 . - . ID=BSGatlas-TSS-242;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 334092 334556 . + . ID=BSGatlas-gene-387;color=#1E90FF;Name=ycgE;locus_tag=BSU03080,BSU_03080;Parent=BSGatlas-operon-141 basu168 BSGatlas CDS 334092 334556 . + 0 ID=BSGatlas-gene-387_transcribed;color=#1E90FF;Name=ycgE;Parent=BSGatlas-transcript-338;comment="putative transcriptional regulator";synonyms="ycgE";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-387 basu168 BSGatlas UTR 334557 334629 . + . ID=BSGatlas-internal_UTR-136;Parent=BSGatlas-transcript-338;comment="internal_UTR" basu168 BSGatlas transcript 334600 336123 . + . ID=BSGatlas-transcript-339;color=#FF9900;Parent=BSGatlas-operon-141,BSGatlas-gene-388,BSGatlas-gene-389;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-243 basu168 BSGatlas exon 334600 336123 . + . ID=BSGatlas-transcript-339_exon;Parent=BSGatlas-transcript-339 basu168 BSGatlas UTR 334600 334629 . + . ID=BSGatlas-5'UTR-195;Parent=BSGatlas-transcript-339;comment="5'UTR" basu168 BSGatlas TSS 334600 334600 . + . ID=BSGatlas-TSS-243;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12662922,17962296" basu168 BSGatlas gene 334630 335259 . + . ID=BSGatlas-gene-388;color=#1E90FF;Name=ycgF;locus_tag=BSU03090,BSU_03090;Parent=BSGatlas-operon-141 basu168 BSGatlas CDS 334630 335259 . + 0 ID=BSGatlas-gene-388_transcribed;color=#1E90FF;Name=ycgF;Parent=BSGatlas-transcript-338,BSGatlas-transcript-339;comment="putative aminoacid export permease";synonyms="ycgF";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006865 amino acid transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-388 basu168 BSGatlas UTR 335260 335328 . + . ID=BSGatlas-internal_UTR-137;Parent=BSGatlas-transcript-338,BSGatlas-transcript-339;comment="internal_UTR" basu168 BSGatlas transcript 335301 336123 . + . ID=BSGatlas-transcript-340;color=#FF9900;Parent=BSGatlas-operon-141,BSGatlas-gene-389;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-244 basu168 BSGatlas exon 335301 336123 . + . ID=BSGatlas-transcript-340_exon;Parent=BSGatlas-transcript-340 basu168 BSGatlas UTR 335301 335328 . + . ID=BSGatlas-5'UTR-196;Parent=BSGatlas-transcript-340;comment="5'UTR" basu168 BSGatlas TSS 335301 335301 . + . ID=BSGatlas-TSS-244;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 335329 336090 . + . ID=BSGatlas-gene-389;color=#1E90FF;Name=ycgG;locus_tag=BSU03100,BSU_03100;Parent=BSGatlas-operon-141 basu168 BSGatlas CDS 335329 336090 . + 0 ID=BSGatlas-gene-389_transcribed;color=#1E90FF;Name=ycgG;Parent=BSGatlas-transcript-338,BSGatlas-transcript-339,BSGatlas-transcript-340;comment="conserved protein of unknown function (similarto phage protein)";synonyms="ycgG";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-389 basu168 BSGatlas operon 335696 337469 . - . ID=BSGatlas-operon-142;color=#B32496 basu168 BSGatlas transcript 335696 337469 . - . ID=BSGatlas-transcript-341;color=#B37924;Parent=BSGatlas-operon-142,BSGatlas-gene-390;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-245 basu168 BSGatlas exon 335696 337469 . - . ID=BSGatlas-transcript-341_exon;Parent=BSGatlas-transcript-341 basu168 BSGatlas UTR 335696 336091 . - . ID=BSGatlas-3'UTR-105;Parent=BSGatlas-transcript-341;comment="3'UTR" basu168 BSGatlas terminator 335696 335762 . - . ID=BSGatlas-terminator-173;Parent=BSGatlas-transcript-341;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas UTR 336091 336123 . + . ID=BSGatlas-3'UTR-106;Parent=BSGatlas-transcript-338,BSGatlas-transcript-339,BSGatlas-transcript-340;comment="3'UTR" basu168 BSGatlas gene 336092 337432 . - . ID=BSGatlas-gene-390;color=#3474B3;Name=ycgH;locus_tag=BSU03110,BSU_03110;Parent=BSGatlas-operon-142 basu168 BSGatlas CDS 336092 337432 . - 0 ID=BSGatlas-gene-390_transcribed;color=#3474B3;Name=ycgH;Parent=BSGatlas-transcript-341;comment="putative amino acid transporter";synonyms="ycgH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-390 basu168 BSGatlas terminator 336104 336123 . + . ID=BSGatlas-terminator-174;Parent=BSGatlas-transcript-338,BSGatlas-transcript-339,BSGatlas-transcript-340;comment="Based on: BsubCyc,Nicolas et al. downshift, Energy: -8.6[kcal/mol]" basu168 BSGatlas UTR 337433 337469 . - . ID=BSGatlas-5'UTR-197;Parent=BSGatlas-transcript-341;comment="5'UTR" basu168 BSGatlas TSS 337469 337469 . - . ID=BSGatlas-TSS-245;color=#B32424;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 337525 338158 . + . ID=BSGatlas-operon-143;color=#FF00CC basu168 BSGatlas transcript 337525 338158 . + . ID=BSGatlas-transcript-342;color=#FF9900;Parent=BSGatlas-operon-143,BSGatlas-gene-391;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-246 basu168 BSGatlas exon 337525 338158 . + . ID=BSGatlas-transcript-342_exon;Parent=BSGatlas-transcript-342 basu168 BSGatlas UTR 337525 337561 . + . ID=BSGatlas-5'UTR-198;Parent=BSGatlas-transcript-342;comment="5'UTR" basu168 BSGatlas TSS 337525 337525 . + . ID=BSGatlas-TSS-246;color=#FF0000;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 337562 338158 . + . ID=BSGatlas-gene-391;color=#1E90FF;Name=ycgI;locus_tag=BSU03120,BSU_03120;Parent=BSGatlas-operon-143 basu168 BSGatlas CDS 337562 338158 . + 0 ID=BSGatlas-gene-391_transcribed;color=#1E90FF;Name=ycgI;Parent=BSGatlas-transcript-342;comment="xenotiotic metabolite methyltransferase";synonyms="ycgI";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-391 basu168 BSGatlas operon 338204 339150 . + . ID=BSGatlas-operon-144;color=#FF00CC basu168 BSGatlas transcript 338204 339150 . + . ID=BSGatlas-transcript-344;color=#FF9900;Parent=BSGatlas-operon-144,BSGatlas-gene-392;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-247 basu168 BSGatlas exon 338204 339150 . + . ID=BSGatlas-transcript-344_exon;Parent=BSGatlas-transcript-344 basu168 BSGatlas transcript 338204 339106 . + . ID=BSGatlas-transcript-343;color=#FF9900;Parent=BSGatlas-operon-144,BSGatlas-gene-392;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-247 basu168 BSGatlas exon 338204 339106 . + . ID=BSGatlas-transcript-343_exon;Parent=BSGatlas-transcript-343 basu168 BSGatlas UTR 338204 338287 . + . ID=BSGatlas-5'UTR-199;Parent=BSGatlas-transcript-343,BSGatlas-transcript-344;comment="5'UTR" basu168 BSGatlas TSS 338204 338204 . + . ID=BSGatlas-TSS-247;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 17962296,9271869" basu168 BSGatlas transcript 338255 339150 . + . ID=BSGatlas-transcript-346;color=#FF9900;Parent=BSGatlas-operon-144,BSGatlas-gene-392;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-248 basu168 BSGatlas exon 338255 339150 . + . ID=BSGatlas-transcript-346_exon;Parent=BSGatlas-transcript-346 basu168 BSGatlas transcript 338255 339106 . + . ID=BSGatlas-transcript-345;color=#FF9900;Parent=BSGatlas-operon-144,BSGatlas-gene-392;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-248 basu168 BSGatlas exon 338255 339106 . + . ID=BSGatlas-transcript-345_exon;Parent=BSGatlas-transcript-345 basu168 BSGatlas UTR 338255 338287 . + . ID=BSGatlas-5'UTR-200;Parent=BSGatlas-transcript-345,BSGatlas-transcript-346;comment="5'UTR" basu168 BSGatlas TSS 338255 338255 . + . ID=BSGatlas-TSS-248;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 17962296,9271869" basu168 BSGatlas operon 338261 339779 . - . ID=BSGatlas-operon-145;color=#B32496 basu168 BSGatlas transcript 338261 339779 . - . ID=BSGatlas-transcript-347;color=#B37924;Parent=BSGatlas-operon-145,BSGatlas-gene-393;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-249 basu168 BSGatlas exon 338261 339779 . - . ID=BSGatlas-transcript-347_exon;Parent=BSGatlas-transcript-347 basu168 BSGatlas UTR 338261 339155 . - . ID=BSGatlas-3'UTR-107;Parent=BSGatlas-transcript-347;comment="3'UTR" basu168 BSGatlas terminator 338261 338305 . - . ID=BSGatlas-terminator-175;Parent=BSGatlas-transcript-347;comment="Based on: Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas gene 338288 339106 . + . ID=BSGatlas-gene-392;color=#1E90FF;Name=nadE;locus_tag=BSU03130,BSU_03130;Parent=BSGatlas-operon-144 basu168 BSGatlas CDS 338288 339106 . + 0 ID=BSGatlas-gene-392_transcribed;color=#1E90FF;Name=nadE;Parent=BSGatlas-transcript-343,BSGatlas-transcript-344,BSGatlas-transcript-345,BSGatlas-transcript-346;comment="ammonium-dependent NAD+ synthetase";synonyms="gsp-81,nadE,outB,tscBGH";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.11 Biosynthesis of NAD(P),SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.3.1.5";go="GO:0000166 nucleotide binding,GO:0003952 NAD+ synthase (glutamine-hydrolyzing) activity,GO:0005524 ATP binding,GO:0006950 response to stress,GO:0008795 NAD+ synthase activity,GO:0009435 NAD biosynthetic process,GO:0016874 ligase activity,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-392 basu168 BSGatlas terminator 339066 339110 . + . ID=BSGatlas-terminator-176;Parent=BSGatlas-transcript-343,BSGatlas-transcript-345;comment="Based on: Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas transcript 339102 339779 . - . ID=BSGatlas-transcript-348;color=#B37924;Parent=BSGatlas-operon-145,BSGatlas-gene-393;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-249 basu168 BSGatlas exon 339102 339779 . - . ID=BSGatlas-transcript-348_exon;Parent=BSGatlas-transcript-348 basu168 BSGatlas UTR 339102 339155 . - . ID=BSGatlas-3'UTR-108;Parent=BSGatlas-transcript-348;comment="3'UTR" basu168 BSGatlas terminator 339102 339140 . - . ID=BSGatlas-terminator-177;Parent=BSGatlas-transcript-348;comment="Based on: BsubCyc,DBTBS, Energy: -17.4[kcal/mol]" basu168 BSGatlas UTR 339107 339150 . + . ID=BSGatlas-3'UTR-109;Parent=BSGatlas-transcript-344,BSGatlas-transcript-346;comment="3'UTR" basu168 BSGatlas terminator 339112 339150 . + . ID=BSGatlas-terminator-178;Parent=BSGatlas-transcript-344,BSGatlas-transcript-346;comment="Based on: BsubCyc,DBTBS, Energy: -17.4[kcal/mol]" basu168 BSGatlas transcript 339141 339779 . - . ID=BSGatlas-transcript-349;color=#B37924;Parent=BSGatlas-operon-145,BSGatlas-gene-393;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-249 basu168 BSGatlas exon 339141 339779 . - . ID=BSGatlas-transcript-349_exon;Parent=BSGatlas-transcript-349 basu168 BSGatlas terminator 339141 339185 . - . ID=BSGatlas-terminator-179;Parent=BSGatlas-transcript-349;comment="Based on: Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas UTR 339141 339155 . - . ID=BSGatlas-3'UTR-110;Parent=BSGatlas-transcript-349;comment="3'UTR" basu168 BSGatlas gene 339156 339749 . - . ID=BSGatlas-gene-393;color=#3474B3;Name=tmrB;locus_tag=BSU03140,BSU_03140;Parent=BSGatlas-operon-145 basu168 BSGatlas CDS 339156 339749 . - 0 ID=BSGatlas-gene-393_transcribed;color=#3474B3;Name=tmrB;Parent=BSGatlas-transcript-347,BSGatlas-transcript-348,BSGatlas-transcript-349;comment="ATP-binding tunicamycin resistance protein";synonyms="tmrB";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-393 basu168 BSGatlas UTR 339750 339779 . - . ID=BSGatlas-5'UTR-201;Parent=BSGatlas-transcript-347,BSGatlas-transcript-348,BSGatlas-transcript-349;comment="5'UTR" basu168 BSGatlas TSS 339779 339779 . - . ID=BSGatlas-TSS-249;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 339807 339955 . - . ID=BSGatlas-operon-146;color=#B32496 basu168 BSGatlas gene 339807 339955 . - . ID=BSGatlas-gene-394;color=#8F1D1D;Name=S111;locus_tag=new_339807_339955_c;Parent=BSGatlas-operon-146 basu168 BSGatlas transcript 339807 339955 . - . ID=BSGatlas-transcript-350;color=#B37924;Parent=BSGatlas-operon-146,BSGatlas-gene-394;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-251 basu168 BSGatlas ncRNA 339807 339955 . - . ID=BSGatlas-gene-394_transcribed;color=#8F1D1D;Name=S111;Parent=BSGatlas-transcript-350;synonyms="S111";derives_from=BSGatlas-gene-394 basu168 BSGatlas exon 339807 339955 . - . ID=BSGatlas-transcript-350_exon;Parent=BSGatlas-transcript-350 basu168 BSGatlas operon 339881 340622 . + . ID=BSGatlas-operon-147;color=#FF00CC basu168 BSGatlas transcript 339881 340622 . + . ID=BSGatlas-transcript-351;color=#FF9900;Parent=BSGatlas-operon-147,BSGatlas-gene-395;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-250 basu168 BSGatlas exon 339881 340622 . + . ID=BSGatlas-transcript-351_exon;Parent=BSGatlas-transcript-351 basu168 BSGatlas UTR 339881 340024 . + . ID=BSGatlas-5'UTR-202;Parent=BSGatlas-transcript-351;comment="5'UTR" basu168 BSGatlas TSS 339881 339881 . + . ID=BSGatlas-TSS-250;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 339965 339965 . - . ID=BSGatlas-TSS-251;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 339989 340622 . + . ID=BSGatlas-transcript-352;color=#FF9900;Parent=BSGatlas-operon-147,BSGatlas-gene-395;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-252 basu168 BSGatlas exon 339989 340622 . + . ID=BSGatlas-transcript-352_exon;Parent=BSGatlas-transcript-352 basu168 BSGatlas UTR 339989 340024 . + . ID=BSGatlas-5'UTR-203;Parent=BSGatlas-transcript-352;comment="5'UTR" basu168 BSGatlas TSS 339989 339989 . + . ID=BSGatlas-TSS-252;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 340025 340585 . + . ID=BSGatlas-gene-395;color=#1E90FF;Name=aroK;locus_tag=BSU03150,BSU_03150;Parent=BSGatlas-operon-147 basu168 BSGatlas CDS 340025 340585 . + 0 ID=BSGatlas-gene-395_transcribed;color=#1E90FF;Name=aroK;Parent=BSGatlas-transcript-351,BSGatlas-transcript-352;comment="shikimate kinase";synonyms="aroI,aroK";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.1.71,EC-2.7.1.71";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0004765 shikimate kinase activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0008652 cellular amino acid biosynthetic process,GO:0009073 aromatic amino acid family biosynthetic process,GO:0009423 chorismate biosynthetic process,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-395 basu168 BSGatlas terminator 340584 340622 . + . ID=BSGatlas-terminator-180;Parent=BSGatlas-transcript-351,BSGatlas-transcript-352;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.2[kcal/mol]" basu168 BSGatlas UTR 340586 340622 . + . ID=BSGatlas-3'UTR-111;Parent=BSGatlas-transcript-351,BSGatlas-transcript-352;comment="3'UTR" basu168 BSGatlas operon 340613 341412 . - . ID=BSGatlas-operon-148;color=#B32496 basu168 BSGatlas transcript 340613 341412 . - . ID=BSGatlas-transcript-353;color=#B37924;Parent=BSGatlas-operon-148,BSGatlas-gene-396;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-253 basu168 BSGatlas exon 340613 341412 . - . ID=BSGatlas-transcript-353_exon;Parent=BSGatlas-transcript-353 basu168 BSGatlas gene 340613 341374 . - . ID=BSGatlas-gene-396;color=#3474B3;Name=ycgJ;locus_tag=BSU03160,BSU_03160;Parent=BSGatlas-operon-148 basu168 BSGatlas CDS 340613 341374 . - 0 ID=BSGatlas-gene-396_transcribed;color=#3474B3;Name=ycgJ;Parent=BSGatlas-transcript-353;comment="xenotiotic metabolite methyltransferase";synonyms="ycgJ";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="2.1.1.-";go="GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-396 basu168 BSGatlas terminator 340615 340659 . - . ID=BSGatlas-terminator-181;Parent=BSGatlas-transcript-353;comment="Based on: Nicolas et al. downshift, Energy: -13.1[kcal/mol]" basu168 BSGatlas UTR 341375 341412 . - . ID=BSGatlas-5'UTR-204;Parent=BSGatlas-transcript-353;comment="5'UTR" basu168 BSGatlas TSS 341412 341412 . - . ID=BSGatlas-TSS-253;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 341441 344360 . + . ID=BSGatlas-operon-149;color=#FF00CC basu168 BSGatlas transcript 341441 344360 . + . ID=BSGatlas-transcript-355;color=#FF9900;Parent=BSGatlas-operon-149,BSGatlas-gene-397,BSGatlas-gene-398,BSGatlas-gene-399;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-254 basu168 BSGatlas exon 341441 344360 . + . ID=BSGatlas-transcript-355_exon;Parent=BSGatlas-transcript-355 basu168 BSGatlas transcript 341441 343543 . + . ID=BSGatlas-transcript-354;color=#FF9900;Parent=BSGatlas-operon-149,BSGatlas-gene-397,BSGatlas-gene-398;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-254 basu168 BSGatlas exon 341441 343543 . + . ID=BSGatlas-transcript-354_exon;Parent=BSGatlas-transcript-354 basu168 BSGatlas UTR 341441 341491 . + . ID=BSGatlas-5'UTR-205;Parent=BSGatlas-transcript-354,BSGatlas-transcript-355;comment="5'UTR" basu168 BSGatlas TSS 341441 341441 . + . ID=BSGatlas-TSS-254;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 341492 342466 . + . ID=BSGatlas-gene-397;color=#1E90FF;Name=ycgK;locus_tag=BSU03170,BSU_03170;Parent=BSGatlas-operon-149 basu168 BSGatlas CDS 341492 342466 . + 0 ID=BSGatlas-gene-397_transcribed;color=#1E90FF;Name=ycgK;Parent=BSGatlas-transcript-354,BSGatlas-transcript-355;comment="putative transcriptional regulator (LysRfamily)";synonyms="ycgK";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-397 basu168 BSGatlas UTR 342467 342537 . + . ID=BSGatlas-internal_UTR-138;Parent=BSGatlas-transcript-354,BSGatlas-transcript-355;comment="internal_UTR" basu168 BSGatlas transcript 342538 344360 . + . ID=BSGatlas-transcript-357;color=#FF9900;Parent=BSGatlas-operon-149,BSGatlas-gene-398,BSGatlas-gene-399;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-255 basu168 BSGatlas exon 342538 344360 . + . ID=BSGatlas-transcript-357_exon;Parent=BSGatlas-transcript-357 basu168 BSGatlas transcript 342538 343543 . + . ID=BSGatlas-transcript-356;color=#FF9900;Parent=BSGatlas-operon-149,BSGatlas-gene-398;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-255 basu168 BSGatlas exon 342538 343543 . + . ID=BSGatlas-transcript-356_exon;Parent=BSGatlas-transcript-356 basu168 BSGatlas gene 342538 343494 . + . ID=BSGatlas-gene-398;color=#1E90FF;Name=cah;locus_tag=BSU03180,BSU_03180;Parent=BSGatlas-operon-149 basu168 BSGatlas CDS 342538 343494 . + 0 ID=BSGatlas-gene-398_transcribed;color=#1E90FF;Name=cah;Parent=BSGatlas-transcript-354,BSGatlas-transcript-355,BSGatlas-transcript-356,BSGatlas-transcript-357;comment="promiscuous acetyl xylan esterase-cephalosporinC deacetylase";synonyms="cah";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics";ec="3.1.1.41,3.1.1.41;3.1.1.72";go="GO:0000272 polysaccharide catabolic process,GO:0005737 cytoplasm,GO:0005975 carbohydrate metabolic process,GO:0016787 hydrolase activity,GO:0030245 cellulose catabolic process,GO:0046555 acetylxylan esterase activity,GO:0047739 cephalosporin-C deacetylase activity";derives_from=BSGatlas-gene-398 basu168 BSGatlas TSS 342981 342981 . + . ID=BSGatlas-TSS-255;color=#FF0000;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 343495 343577 . + . ID=BSGatlas-internal_UTR-139;Parent=BSGatlas-transcript-355,BSGatlas-transcript-357;comment="internal_UTR" basu168 BSGatlas UTR 343495 343543 . + . ID=BSGatlas-3'UTR-112;Parent=BSGatlas-transcript-354,BSGatlas-transcript-356;comment="3'UTR" basu168 BSGatlas terminator 343503 343543 . + . ID=BSGatlas-terminator-182;Parent=BSGatlas-transcript-354,BSGatlas-transcript-356;comment="Based on: BsubCyc,DBTBS, Energy: -9.9[kcal/mol]" basu168 BSGatlas TSS 343575 343575 . + . ID=BSGatlas-TSS-256;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 343578 344360 . + . ID=BSGatlas-gene-399;color=#1E90FF;Name=ycgL;locus_tag=BSU03190,BSU_03190;Parent=BSGatlas-operon-149 basu168 BSGatlas transcript 343578 344360 . + . ID=BSGatlas-transcript-358;color=#FF9900;Parent=BSGatlas-operon-149,BSGatlas-gene-399;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-256 basu168 BSGatlas CDS 343578 344360 . + 0 ID=BSGatlas-gene-399_transcribed;color=#1E90FF;Name=ycgL;Parent=BSGatlas-transcript-355,BSGatlas-transcript-357,BSGatlas-transcript-358;comment="conserved protein of unknown function";synonyms="ycgL";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)";derives_from=BSGatlas-gene-399 basu168 BSGatlas exon 343578 344360 . + . ID=BSGatlas-transcript-358_exon;Parent=BSGatlas-transcript-358 basu168 BSGatlas terminator 344303 344347 . + . ID=BSGatlas-terminator-183;Parent=BSGatlas-transcript-355,BSGatlas-transcript-357,BSGatlas-transcript-358;comment="Based on: Nicolas et al. downshift, Energy: -5.9[kcal/mol]" basu168 BSGatlas operon 344499 348571 . + . ID=BSGatlas-operon-150;color=#FF00CC basu168 BSGatlas transcript 344499 348571 . + . ID=BSGatlas-transcript-360;color=#FF9900;Parent=BSGatlas-operon-150,BSGatlas-gene-400,BSGatlas-gene-401,BSGatlas-gene-402;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-257 basu168 BSGatlas exon 344499 348571 . + . ID=BSGatlas-transcript-360_exon;Parent=BSGatlas-transcript-360 basu168 BSGatlas transcript 344499 347065 . + . ID=BSGatlas-transcript-359;color=#FF9900;Parent=BSGatlas-operon-150,BSGatlas-gene-400,BSGatlas-gene-401;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-257 basu168 BSGatlas exon 344499 347065 . + . ID=BSGatlas-transcript-359_exon;Parent=BSGatlas-transcript-359 basu168 BSGatlas UTR 344499 344550 . + . ID=BSGatlas-5'UTR-206;Parent=BSGatlas-transcript-359,BSGatlas-transcript-360;comment="5'UTR" basu168 BSGatlas TSS 344499 344499 . + . ID=BSGatlas-TSS-257;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 344551 345462 . + . ID=BSGatlas-gene-400;color=#1E90FF;Name=putB;locus_tag=BSU03200,BSU_03200;Parent=BSGatlas-operon-150 basu168 BSGatlas CDS 344551 345462 . + 0 ID=BSGatlas-gene-400_transcribed;color=#1E90FF;Name=putB;Parent=BSGatlas-transcript-359,BSGatlas-transcript-360;comment="proline oxidase";synonyms="putB,ycgM";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.2 Utilization of proline";ec="1.5.5.2,1.5.99.8,EC-1.5.5.2";go="GO:0004657 proline dehydrogenase activity,GO:0006537 glutamate biosynthetic process,GO:0006560 proline metabolic process,GO:0006562 proline catabolic process,GO:0010133 proline catabolic process to glutamate,GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-400 basu168 BSGatlas UTR 345463 345478 . + . ID=BSGatlas-internal_UTR-140;Parent=BSGatlas-transcript-359,BSGatlas-transcript-360;comment="internal_UTR" basu168 BSGatlas gene 345479 347026 . + . ID=BSGatlas-gene-401;color=#1E90FF;Name=putC;locus_tag=BSU03210,BSU_03210;Parent=BSGatlas-operon-150 basu168 BSGatlas CDS 345479 347026 . + 0 ID=BSGatlas-gene-401_transcribed;color=#1E90FF;Name=putC;Parent=BSGatlas-transcript-359,BSGatlas-transcript-360;comment="1-pyrroline-5-carboxylate dehydrogenase";synonyms="putC,ycgN";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.2 Utilization of proline";ec="1.2.1.88,1.5.1.12";go="GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity,GO:0006537 glutamate biosynthetic process,GO:0006561 proline biosynthetic process,GO:0008152 metabolic process,GO:0010133 proline catabolic process to glutamate,GO:0016491 oxidoreductase activity,GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-401 basu168 BSGatlas transcript 346478 348571 . + . ID=BSGatlas-transcript-361;color=#FF9900;Parent=BSGatlas-operon-150,BSGatlas-gene-402;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-258 basu168 BSGatlas exon 346478 348571 . + . ID=BSGatlas-transcript-361_exon;Parent=BSGatlas-transcript-361 basu168 BSGatlas UTR 346478 347149 . + . ID=BSGatlas-5'UTR-207;Parent=BSGatlas-transcript-361;comment="5'UTR" basu168 BSGatlas TSS 346478 346478 . + . ID=BSGatlas-TSS-258;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 346589 348571 . + . ID=BSGatlas-transcript-362;color=#FF9900;Parent=BSGatlas-operon-150,BSGatlas-gene-402;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-259 basu168 BSGatlas exon 346589 348571 . + . ID=BSGatlas-transcript-362_exon;Parent=BSGatlas-transcript-362 basu168 BSGatlas UTR 346589 347149 . + . ID=BSGatlas-5'UTR-208;Parent=BSGatlas-transcript-362;comment="5'UTR" basu168 BSGatlas TSS 346589 346589 . + . ID=BSGatlas-TSS-259;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 347027 347149 . + . ID=BSGatlas-internal_UTR-141;Parent=BSGatlas-transcript-360;comment="internal_UTR" basu168 BSGatlas UTR 347027 347065 . + . ID=BSGatlas-3'UTR-113;Parent=BSGatlas-transcript-359;comment="3'UTR" basu168 BSGatlas transcript 347029 348571 . + . ID=BSGatlas-transcript-363;color=#FF9900;Parent=BSGatlas-operon-150,BSGatlas-gene-402;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-260 basu168 BSGatlas exon 347029 348571 . + . ID=BSGatlas-transcript-363_exon;Parent=BSGatlas-transcript-363 basu168 BSGatlas UTR 347029 347149 . + . ID=BSGatlas-5'UTR-209;Parent=BSGatlas-transcript-363;comment="5'UTR" basu168 BSGatlas TSS 347029 347029 . + . ID=BSGatlas-TSS-260;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 347038 347065 . + . ID=BSGatlas-terminator-184;Parent=BSGatlas-transcript-359;comment="Based on: BsubCyc, Energy: -18.6[kcal/mol]" basu168 BSGatlas gene 347150 348571 . + . ID=BSGatlas-gene-402;color=#1E90FF;Name=putP;locus_tag=BSU03220,BSU_03220;Parent=BSGatlas-operon-150 basu168 BSGatlas CDS 347150 348571 . + 0 ID=BSGatlas-gene-402_transcribed;color=#1E90FF;Name=putP;Parent=BSGatlas-transcript-360,BSGatlas-transcript-361,BSGatlas-transcript-362,BSGatlas-transcript-363;comment="proline permease";synonyms="putP,ycgO";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.1 Solute:sodium symporter family,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.2 Biosynthesis/ acquisition of proline,SW 2.3.2 Utilization of amino acids,SW 2.3.2.2 Utilization of proline,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005298 proline:sodium symporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006814 sodium ion transport,GO:0015293 symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0031402 sodium ion binding,GO:0035524 proline transmembrane transport,GO:0035725 sodium ion transmembrane transport,GO:0055085 transmembrane transport,GO:1902475 L-alpha-amino acid transmembrane transport";derives_from=BSGatlas-gene-402 basu168 BSGatlas operon 347670 349525 . - . ID=BSGatlas-operon-151;color=#B32496 basu168 BSGatlas gene 347670 349525 . - . ID=BSGatlas-gene-403;color=#8F1D1D;Name=S117;locus_tag=new_347670_349525_c;Parent=BSGatlas-operon-151 basu168 BSGatlas transcript 347670 349525 . - . ID=BSGatlas-transcript-364;color=#B37924;Parent=BSGatlas-operon-151,BSGatlas-gene-403;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-262 basu168 BSGatlas ncRNA 347670 349525 . - . ID=BSGatlas-gene-403_transcribed;color=#8F1D1D;Name=S117;Parent=BSGatlas-transcript-364;synonyms="S117";derives_from=BSGatlas-gene-403 basu168 BSGatlas exon 347670 349525 . - . ID=BSGatlas-transcript-364_exon;Parent=BSGatlas-transcript-364 basu168 BSGatlas terminator 348529 348573 . + . ID=BSGatlas-terminator-185;Parent=BSGatlas-transcript-360,BSGatlas-transcript-361,BSGatlas-transcript-362,BSGatlas-transcript-363;comment="Based on: Nicolas et al. downshift, Energy: -15.9[kcal/mol]" basu168 BSGatlas operon 348694 349959 . + . ID=BSGatlas-operon-152;color=#FF00CC basu168 BSGatlas transcript 348694 349959 . + . ID=BSGatlas-transcript-365;color=#FF9900;Parent=BSGatlas-operon-152,BSGatlas-gene-404;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-261 basu168 BSGatlas exon 348694 349959 . + . ID=BSGatlas-transcript-365_exon;Parent=BSGatlas-transcript-365 basu168 BSGatlas UTR 348694 348723 . + . ID=BSGatlas-5'UTR-210;Parent=BSGatlas-transcript-365;comment="5'UTR" basu168 BSGatlas TSS 348694 348694 . + . ID=BSGatlas-TSS-261;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 348724 349959 . + . ID=BSGatlas-gene-404;color=#1E90FF;Name=putR;locus_tag=BSU03230,BSU_03230;Parent=BSGatlas-operon-152 basu168 BSGatlas CDS 348724 349959 . + 0 ID=BSGatlas-gene-404_transcribed;color=#1E90FF;Name=putR;Parent=BSGatlas-transcript-365;comment="transcriptional activator of proline degradationoperon";synonyms="prcR,putR,ycgP";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.2 Utilization of proline,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0001140 transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding,GO:0016597 amino acid binding,GO:2000144 positive regulation of DNA-templated transcription, initiation,GO:2000216 positive regulation of proline metabolic process";derives_from=BSGatlas-gene-404 basu168 BSGatlas TSS 349535 349535 . - . ID=BSGatlas-TSS-262;color=#B32424;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 349921 352803 . - . ID=BSGatlas-operon-153;color=#B32496 basu168 BSGatlas transcript 349921 352803 . - . ID=BSGatlas-transcript-368;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-407,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-266 basu168 BSGatlas exon 349921 352803 . - . ID=BSGatlas-transcript-368_exon;Parent=BSGatlas-transcript-368 basu168 BSGatlas transcript 349921 352735 . - . ID=BSGatlas-transcript-367;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-407,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-264 basu168 BSGatlas exon 349921 352735 . - . ID=BSGatlas-transcript-367_exon;Parent=BSGatlas-transcript-367 basu168 BSGatlas transcript 349921 351794 . - . ID=BSGatlas-transcript-366;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-263 basu168 BSGatlas exon 349921 351794 . - . ID=BSGatlas-transcript-366_exon;Parent=BSGatlas-transcript-366 basu168 BSGatlas UTR 349921 349995 . - . ID=BSGatlas-3'UTR-114;Parent=BSGatlas-transcript-366,BSGatlas-transcript-367,BSGatlas-transcript-368;comment="3'UTR" basu168 BSGatlas terminator 349921 349965 . - . ID=BSGatlas-terminator-186;Parent=BSGatlas-transcript-366,BSGatlas-transcript-367,BSGatlas-transcript-368;comment="Based on: Nicolas et al. downshift, Energy: -16.9[kcal/mol]" basu168 BSGatlas terminator 349987 350031 . - . ID=BSGatlas-terminator-187;Parent=BSGatlas-transcript-369,BSGatlas-transcript-370,BSGatlas-transcript-371;comment="Based on: Nicolas et al. downshift, Energy: -16.9[kcal/mol]" basu168 BSGatlas transcript 349996 352803 . - . ID=BSGatlas-transcript-371;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-407,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-266 basu168 BSGatlas exon 349996 352803 . - . ID=BSGatlas-transcript-371_exon;Parent=BSGatlas-transcript-371 basu168 BSGatlas transcript 349996 352735 . - . ID=BSGatlas-transcript-370;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-407,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-264 basu168 BSGatlas exon 349996 352735 . - . ID=BSGatlas-transcript-370_exon;Parent=BSGatlas-transcript-370 basu168 BSGatlas transcript 349996 351794 . - . ID=BSGatlas-transcript-369;color=#B37924;Parent=BSGatlas-operon-153,BSGatlas-gene-406,BSGatlas-gene-405;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-263 basu168 BSGatlas exon 349996 351794 . - . ID=BSGatlas-transcript-369_exon;Parent=BSGatlas-transcript-369 basu168 BSGatlas gene 349996 350853 . - . ID=BSGatlas-gene-405;color=#3474B3;Name=ycgQ;locus_tag=BSU03240,BSU_03240;Parent=BSGatlas-operon-153 basu168 BSGatlas CDS 349996 350853 . - 0 ID=BSGatlas-gene-405_transcribed;color=#3474B3;Name=ycgQ;Parent=BSGatlas-transcript-366,BSGatlas-transcript-367,BSGatlas-transcript-368,BSGatlas-transcript-369,BSGatlas-transcript-370,BSGatlas-transcript-371;comment="conserved protein of unknown function";synonyms="ycgQ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-405 basu168 BSGatlas gene 350858 351742 . - . ID=BSGatlas-gene-406;color=#3474B3;Name=ycgR;locus_tag=BSU03250,BSU_03250;Parent=BSGatlas-operon-153 basu168 BSGatlas CDS 350858 351742 . - 0 ID=BSGatlas-gene-406_transcribed;color=#3474B3;Name=ycgR;Parent=BSGatlas-transcript-366,BSGatlas-transcript-367,BSGatlas-transcript-368,BSGatlas-transcript-369,BSGatlas-transcript-370,BSGatlas-transcript-371;comment="putative permease";synonyms="ycgR";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-406 basu168 BSGatlas UTR 351743 351841 . - . ID=BSGatlas-internal_UTR-142;Parent=BSGatlas-transcript-367,BSGatlas-transcript-368,BSGatlas-transcript-370,BSGatlas-transcript-371;comment="internal_UTR" basu168 BSGatlas UTR 351743 351794 . - . ID=BSGatlas-5'UTR-211;Parent=BSGatlas-transcript-366,BSGatlas-transcript-369;comment="5'UTR" basu168 BSGatlas TSS 351794 351794 . - . ID=BSGatlas-TSS-263;color=#B32424;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 351842 352696 . - . ID=BSGatlas-gene-407;color=#3474B3;Name=ycgS;locus_tag=BSU03260,BSU_03260;Parent=BSGatlas-operon-153 basu168 BSGatlas CDS 351842 352696 . - 0 ID=BSGatlas-gene-407_transcribed;color=#3474B3;Name=ycgS;Parent=BSGatlas-transcript-367,BSGatlas-transcript-368,BSGatlas-transcript-370,BSGatlas-transcript-371;comment="putative aromatic hydrocarbon hydrolase";synonyms="ycgS";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.7.1.-";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-407 basu168 BSGatlas UTR 352697 352803 . - . ID=BSGatlas-5'UTR-213;Parent=BSGatlas-transcript-368,BSGatlas-transcript-371;comment="5'UTR" basu168 BSGatlas UTR 352697 352735 . - . ID=BSGatlas-5'UTR-212;Parent=BSGatlas-transcript-367,BSGatlas-transcript-370;comment="5'UTR" basu168 BSGatlas TSS 352735 352735 . - . ID=BSGatlas-TSS-264;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 352794 353929 . + . ID=BSGatlas-operon-154;color=#FF00CC basu168 BSGatlas transcript 352794 353929 . + . ID=BSGatlas-transcript-372;color=#FF9900;Parent=BSGatlas-operon-154,BSGatlas-gene-408;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-265 basu168 BSGatlas exon 352794 353929 . + . ID=BSGatlas-transcript-372_exon;Parent=BSGatlas-transcript-372 basu168 BSGatlas UTR 352794 352857 . + . ID=BSGatlas-5'UTR-214;Parent=BSGatlas-transcript-372;comment="5'UTR" basu168 BSGatlas TSS 352794 352794 . + . ID=BSGatlas-TSS-265;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 352803 352803 . - . ID=BSGatlas-TSS-266;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 352858 353868 . + . ID=BSGatlas-gene-408;color=#1E90FF;Name=ffoR;locus_tag=BSU03270,BSU_03270;Parent=BSGatlas-operon-154 basu168 BSGatlas CDS 352858 353868 . + 0 ID=BSGatlas-gene-408_transcribed;color=#1E90FF;Name=ffoR;Parent=BSGatlas-transcript-372;comment="Fur-regulated NADPH:ferredoxin oxidoreductase";synonyms="ycgT";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.4 Electron transport/ other/ based on similarity";ec="1.18.1.-;1.8.1.-,EC-1.8.1.9";go="GO:0004324 ferredoxin-NADP+ reductase activity,GO:0016491 oxidoreductase activity,GO:0050660 flavin adenine dinucleotide binding,GO:0050661 NADP binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-408 basu168 BSGatlas operon 353856 362797 . - . ID=BSGatlas-operon-155;color=#B32496 basu168 BSGatlas transcript 353856 362797 . - . ID=BSGatlas-transcript-375;color=#B37924;Parent=BSGatlas-operon-155,BSGatlas-gene-413,BSGatlas-gene-412,BSGatlas-gene-411,BSGatlas-gene-410,BSGatlas-gene-409;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-270 basu168 BSGatlas exon 353856 362797 . - . ID=BSGatlas-transcript-375_exon;Parent=BSGatlas-transcript-375 basu168 BSGatlas transcript 353856 358211 . - . ID=BSGatlas-transcript-374;color=#B37924;Parent=BSGatlas-operon-155,BSGatlas-gene-411,BSGatlas-gene-410,BSGatlas-gene-409;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-269 basu168 BSGatlas exon 353856 358211 . - . ID=BSGatlas-transcript-374_exon;Parent=BSGatlas-transcript-374 basu168 BSGatlas transcript 353856 355732 . - . ID=BSGatlas-transcript-373;color=#B37924;Parent=BSGatlas-operon-155,BSGatlas-gene-410,BSGatlas-gene-409;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-268 basu168 BSGatlas exon 353856 355732 . - . ID=BSGatlas-transcript-373_exon;Parent=BSGatlas-transcript-373 basu168 BSGatlas UTR 353856 353899 . - . ID=BSGatlas-3'UTR-115;Parent=BSGatlas-transcript-373,BSGatlas-transcript-374,BSGatlas-transcript-375;comment="3'UTR" basu168 BSGatlas terminator 353856 353897 . - . ID=BSGatlas-terminator-188;Parent=BSGatlas-transcript-373,BSGatlas-transcript-374,BSGatlas-transcript-375;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 353869 353929 . + . ID=BSGatlas-3'UTR-116;Parent=BSGatlas-transcript-372;comment="3'UTR" basu168 BSGatlas terminator 353885 353929 . + . ID=BSGatlas-terminator-189;Parent=BSGatlas-transcript-372;comment="Based on: BsubCyc,DBTBS, Energy: -6[kcal/mol]" basu168 BSGatlas gene 353900 355351 . - . ID=BSGatlas-gene-409;color=#3474B3;Name=nasF;locus_tag=BSU03280,BSU_03280;Parent=BSGatlas-operon-155 basu168 BSGatlas CDS 353900 355351 . - 0 ID=BSGatlas-gene-409_transcribed;color=#3474B3;Name=nasF;Parent=BSGatlas-transcript-373,BSGatlas-transcript-374,BSGatlas-transcript-375;comment="uroporphyrin-III C-methyltransferase";synonyms="nasBE,nasF";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.2 Respiration,SW 2.1.2.2 Anaerobic respiration,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite";ec="2.1.1.107";go="GO:0004851 uroporphyrin-III C-methyltransferase activity,GO:0004852 uroporphyrinogen-III synthase activity,GO:0006779 porphyrin-containing compound biosynthetic process,GO:0008152 metabolic process,GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation,GO:0033014 tetrapyrrole biosynthetic process,GO:0043115 precorrin-2 dehydrogenase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-409 basu168 BSGatlas UTR 355352 355411 . - . ID=BSGatlas-internal_UTR-143;Parent=BSGatlas-transcript-373,BSGatlas-transcript-374,BSGatlas-transcript-375;comment="internal_UTR" basu168 BSGatlas gene 355412 355732 . - . ID=BSGatlas-gene-410;color=#3474B3;Name=nasE;locus_tag=BSU03290,BSU_03290;Parent=BSGatlas-operon-155 basu168 BSGatlas CDS 355412 355732 . - 0 ID=BSGatlas-gene-410_transcribed;color=#3474B3;Name=nasE;Parent=BSGatlas-transcript-373,BSGatlas-transcript-374,BSGatlas-transcript-375;comment="assimilatory nitrite reductase subunit";synonyms="nasBD,nasE,nirD";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.2 Respiration,SW 2.1.2.2 Anaerobic respiration,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite";ec="1.7.1.4";go="GO:0005737 cytoplasm,GO:0008942 nitrite reductase [NAD(P)H] activity,GO:0016491 oxidoreductase activity,GO:0042128 nitrate assimilation,GO:0046872 metal ion binding,GO:0051536 iron-sulfur cluster binding,GO:0051537 2 iron, 2 sulfur cluster binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-410 basu168 BSGatlas TSS 355609 355609 . + . ID=BSGatlas-TSS-267;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 355641 355641 . - . ID=BSGatlas-TSS-268;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 355733 355763 . - . ID=BSGatlas-internal_UTR-144;Parent=BSGatlas-transcript-374,BSGatlas-transcript-375;comment="internal_UTR" basu168 BSGatlas gene 355764 358181 . - . ID=BSGatlas-gene-411;color=#3474B3;Name=nasD;locus_tag=BSU03300,BSU_03300;Parent=BSGatlas-operon-155 basu168 BSGatlas CDS 355764 358181 . - 0 ID=BSGatlas-gene-411_transcribed;color=#3474B3;Name=nasD;Parent=BSGatlas-transcript-374,BSGatlas-transcript-375;comment="assimilatory nitrite reductase subunit";synonyms="nasBC,nasD,nirB";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.2 Respiration,SW 2.1.2.2 Anaerobic respiration,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite";ec="1.7.1.4";go="GO:0008942 nitrite reductase [NAD(P)H] activity,GO:0016491 oxidoreductase activity,GO:0020037 heme binding,GO:0042128 nitrate assimilation,GO:0046872 metal ion binding,GO:0050660 flavin adenine dinucleotide binding,GO:0050661 NADP binding,GO:0051536 iron-sulfur cluster binding,GO:0051539 4 iron, 4 sulfur cluster binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-411 basu168 BSGatlas terminator 356283 356349 . + . ID=BSGatlas-terminator-190;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas UTR 358182 358302 . - . ID=BSGatlas-internal_UTR-145;Parent=BSGatlas-transcript-375;comment="internal_UTR" basu168 BSGatlas UTR 358182 358211 . - . ID=BSGatlas-5'UTR-215;Parent=BSGatlas-transcript-374;comment="5'UTR" basu168 BSGatlas TSS 358211 358211 . - . ID=BSGatlas-TSS-269;color=#B32424;comment="Simga: ?, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 9765565" basu168 BSGatlas gene 358303 360435 . - . ID=BSGatlas-gene-412;color=#3474B3;Name=nasC;locus_tag=BSU03310,BSU_03310;Parent=BSGatlas-operon-155 basu168 BSGatlas CDS 358303 360435 . - 0 ID=BSGatlas-gene-412_transcribed;color=#3474B3;Name=nasC;Parent=BSGatlas-transcript-375;comment="assimilatory nitrate reductase (catalyticsubunit)";synonyms="narB,nasBB,nasC";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite";ec="1.7.99.4";go="GO:0008940 nitrate reductase activity,GO:0009055 electron transfer activity,GO:0016491 oxidoreductase activity,GO:0016651 oxidoreductase activity, acting on NAD(P)H,GO:0019333 denitrification pathway,GO:0030151 molybdenum ion binding,GO:0042128 nitrate assimilation,GO:0045333 cellular respiration,GO:0046872 metal ion binding,GO:0051536 iron-sulfur cluster binding,GO:0051539 4 iron, 4 sulfur cluster binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-412 basu168 BSGatlas gene 360442 362757 . - . ID=BSGatlas-gene-413;color=#3474B3;Name=nasB;locus_tag=BSU03320,BSU_03320;Parent=BSGatlas-operon-155 basu168 BSGatlas CDS 360442 362757 . - 0 ID=BSGatlas-gene-413_transcribed;color=#3474B3;Name=nasB;Parent=BSGatlas-transcript-375;comment="assimilatory nitrate reductase (electrontransfer subunit NasB)";synonyms="nasB,nasBA";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite";ec="1.7.1.3";go="GO:0008940 nitrate reductase activity,GO:0008942 nitrite reductase [NAD(P)H] activity,GO:0016491 oxidoreductase activity,GO:0020037 heme binding,GO:0042128 nitrate assimilation,GO:0050660 flavin adenine dinucleotide binding,GO:0050661 NADP binding,GO:0051536 iron-sulfur cluster binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-413 basu168 BSGatlas UTR 362758 362797 . - . ID=BSGatlas-5'UTR-216;Parent=BSGatlas-transcript-375;comment="5'UTR" basu168 BSGatlas TSS 362797 362797 . - . ID=BSGatlas-TSS-270;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7836289" basu168 BSGatlas operon 362897 364187 . + . ID=BSGatlas-operon-156;color=#FF00CC basu168 BSGatlas transcript 362897 364187 . + . ID=BSGatlas-transcript-376;color=#FF9900;Parent=BSGatlas-operon-156,BSGatlas-gene-414;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-271 basu168 BSGatlas exon 362897 364187 . + . ID=BSGatlas-transcript-376_exon;Parent=BSGatlas-transcript-376 basu168 BSGatlas UTR 362897 362936 . + . ID=BSGatlas-5'UTR-217;Parent=BSGatlas-transcript-376;comment="5'UTR" basu168 BSGatlas TSS 362897 362897 . + . ID=BSGatlas-TSS-271;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,7836289" basu168 BSGatlas gene 362937 364142 . + . ID=BSGatlas-gene-414;color=#1E90FF;Name=nasA;locus_tag=BSU03330,BSU_03330;Parent=BSGatlas-operon-156 basu168 BSGatlas CDS 362937 364142 . + 0 ID=BSGatlas-gene-414_transcribed;color=#1E90FF;Name=nasA;Parent=BSGatlas-transcript-376;comment="putative nitrate transporter";synonyms="nasA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.8 Uptake of other small ions,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.1 Utilization of nitrate/ nitrite,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0015112 nitrate transmembrane transporter activity,GO:0015113 nitrite transmembrane transporter activity,GO:0015706 nitrate transport,GO:0015707 nitrite transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034220 ion transmembrane transport,GO:0042128 nitrate assimilation,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-414 basu168 BSGatlas terminator 364140 364187 . + . ID=BSGatlas-terminator-191;Parent=BSGatlas-transcript-376;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.6[kcal/mol]" basu168 BSGatlas UTR 364143 364187 . + . ID=BSGatlas-3'UTR-117;Parent=BSGatlas-transcript-376;comment="3'UTR" basu168 BSGatlas operon 364221 367298 . + . ID=BSGatlas-operon-157;color=#FF00CC basu168 BSGatlas transcript 364221 367298 . + . ID=BSGatlas-transcript-377;color=#FF9900;Parent=BSGatlas-operon-157,BSGatlas-gene-415,BSGatlas-gene-416,BSGatlas-gene-417,BSGatlas-gene-418;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-272 basu168 BSGatlas exon 364221 367298 . + . ID=BSGatlas-transcript-377_exon;Parent=BSGatlas-transcript-377 basu168 BSGatlas UTR 364221 364258 . + . ID=BSGatlas-5'UTR-218;Parent=BSGatlas-transcript-377;comment="5'UTR" basu168 BSGatlas TSS 364221 364221 . + . ID=BSGatlas-TSS-272;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12426338,17962296" basu168 BSGatlas gene 364259 365173 . + . ID=BSGatlas-gene-415;color=#1E90FF;Name=folEB;locus_tag=BSU03340,BSU_03340;Parent=BSGatlas-operon-157 basu168 BSGatlas CDS 364259 365173 . + 0 ID=BSGatlas-gene-415_transcribed;color=#1E90FF;Name=folEB;Parent=BSGatlas-transcript-377;comment="GTP cyclohydrolase I";synonyms="folE2,folEB,yciA";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.5 Biosynthesis of folate";ec="3.5.4.16,EC-3.5.4.16";go="GO:0003934 GTP cyclohydrolase I activity,GO:0016787 hydrolase activity,GO:0035998 7,8-dihydroneopterin 3'-triphosphate biosynthetic process";derives_from=BSGatlas-gene-415 basu168 BSGatlas gene 365170 365754 . + . ID=BSGatlas-gene-416;color=#1E90FF;Name=yciB;locus_tag=BSU03350,BSU_03350;Parent=BSGatlas-operon-157 basu168 BSGatlas CDS 365170 365754 . + 0 ID=BSGatlas-gene-416_transcribed;color=#1E90FF;Name=yciB;Parent=BSGatlas-transcript-377;comment="putative Zn(2+)-dependent division lipoprotein(schizosome)";synonyms="yciB";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0008360 regulation of cell shape,GO:0009252 peptidoglycan biosynthetic process,GO:0016020 membrane,GO:0016740 transferase activity,GO:0016757 transferase activity, transferring glycosyl groups,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-416 basu168 BSGatlas UTR 365755 365849 . + . ID=BSGatlas-internal_UTR-146;Parent=BSGatlas-transcript-377;comment="internal_UTR" basu168 BSGatlas transcript 365802 367298 . + . ID=BSGatlas-transcript-378;color=#FF9900;Parent=BSGatlas-operon-157,BSGatlas-gene-417,BSGatlas-gene-418;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-273 basu168 BSGatlas exon 365802 367298 . + . ID=BSGatlas-transcript-378_exon;Parent=BSGatlas-transcript-378 basu168 BSGatlas UTR 365802 365849 . + . ID=BSGatlas-5'UTR-219;Parent=BSGatlas-transcript-378;comment="5'UTR" basu168 BSGatlas TSS 365802 365802 . + . ID=BSGatlas-TSS-273;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 12426338" basu168 BSGatlas gene 365850 366035 . + . ID=BSGatlas-gene-417;color=#1E90FF;Name=yczL;locus_tag=BSU03359,BSU_03359;Parent=BSGatlas-operon-157 basu168 BSGatlas CDS 365850 366035 . + 0 ID=BSGatlas-gene-417_transcribed;color=#1E90FF;Name=yczL;Parent=BSGatlas-transcript-377,BSGatlas-transcript-378;comment="hypothetical protein";synonyms="yczL";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-417 basu168 BSGatlas UTR 366036 366062 . + . ID=BSGatlas-internal_UTR-147;Parent=BSGatlas-transcript-377,BSGatlas-transcript-378;comment="internal_UTR" basu168 BSGatlas gene 366063 367256 . + . ID=BSGatlas-gene-418;color=#1E90FF;Name=zinU;locus_tag=BSU03360,BSU_03360;Parent=BSGatlas-operon-157 basu168 BSGatlas CDS 366063 367256 . + 0 ID=BSGatlas-gene-418_transcribed;color=#1E90FF;Name=zinU;Parent=BSGatlas-transcript-377,BSGatlas-transcript-378;comment="zinc metallochaperone with NTPase activity";synonyms="yciC,zagA";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.3 Zinc,SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.4 Targets of ZTP,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0000166 nucleotide binding,GO:0005525 GTP binding,GO:0044459 plasma membrane part";derives_from=BSGatlas-gene-418 basu168 BSGatlas UTR 367257 367298 . + . ID=BSGatlas-3'UTR-118;Parent=BSGatlas-transcript-377,BSGatlas-transcript-378;comment="3'UTR" basu168 BSGatlas terminator 367259 367298 . + . ID=BSGatlas-terminator-192;Parent=BSGatlas-transcript-377,BSGatlas-transcript-378;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.5[kcal/mol]" basu168 BSGatlas operon 367289 368892 . - . ID=BSGatlas-operon-158;color=#B32496 basu168 BSGatlas transcript 367289 368892 . - . ID=BSGatlas-transcript-379;color=#B37924;Parent=BSGatlas-operon-158,BSGatlas-gene-420,BSGatlas-gene-419;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-274 basu168 BSGatlas exon 367289 368892 . - . ID=BSGatlas-transcript-379_exon;Parent=BSGatlas-transcript-379 basu168 BSGatlas terminator 367289 367333 . - . ID=BSGatlas-terminator-193;Parent=BSGatlas-transcript-379;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas UTR 367289 367304 . - . ID=BSGatlas-3'UTR-119;Parent=BSGatlas-transcript-379;comment="3'UTR" basu168 BSGatlas gene 367305 367985 . - . ID=BSGatlas-gene-419;color=#3474B3;Name=yckA;locus_tag=BSU03370,BSU_03370;Parent=BSGatlas-operon-158 basu168 BSGatlas CDS 367305 367985 . - 0 ID=BSGatlas-gene-419_transcribed;color=#3474B3;Name=yckA;Parent=BSGatlas-transcript-379;comment="aminoacid ABC transporter (permease subunit)";synonyms="yckA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.4 Unknown ABC transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-419 basu168 BSGatlas gene 367995 368858 . - . ID=BSGatlas-gene-420;color=#3474B3;Name=yckB;locus_tag=BSU03380,BSU_03380;Parent=BSGatlas-operon-158 basu168 BSGatlas CDS 367995 368858 . - 0 ID=BSGatlas-gene-420_transcribed;color=#3474B3;Name=yckB;Parent=BSGatlas-transcript-379;comment="amino acid ABC transporter (binding lipoproteinsubunit)";synonyms="yckB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.4 Unknown ABC transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0030288 outer membrane-bounded periplasmic space";derives_from=BSGatlas-gene-420 basu168 BSGatlas UTR 368859 368892 . - . ID=BSGatlas-5'UTR-220;Parent=BSGatlas-transcript-379;comment="5'UTR" basu168 BSGatlas TSS 368892 368892 . - . ID=BSGatlas-TSS-274;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 368964 369217 . + . ID=BSGatlas-operon-159;color=#FF00CC basu168 BSGatlas transcript 368964 369217 . + . ID=BSGatlas-transcript-380;color=#FF9900;Parent=BSGatlas-operon-159,BSGatlas-gene-421;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-275 basu168 BSGatlas exon 368964 369217 . + . ID=BSGatlas-transcript-380_exon;Parent=BSGatlas-transcript-380 basu168 BSGatlas UTR 368964 369019 . + . ID=BSGatlas-5'UTR-221;Parent=BSGatlas-transcript-380;comment="5'UTR" basu168 BSGatlas TSS 368964 368964 . + . ID=BSGatlas-TSS-275;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 369020 369217 . + . ID=BSGatlas-gene-421;color=#1E90FF;locus_tag=BSU_03385;Parent=BSGatlas-operon-159 basu168 BSGatlas CDS 369020 369217 . + 0 ID=BSGatlas-gene-421_transcribed;color=#1E90FF;Parent=BSGatlas-transcript-380;comment="hypothetical protein";derives_from=BSGatlas-gene-421 basu168 BSGatlas operon 369188 369716 . + . ID=BSGatlas-operon-160;color=#FF00CC basu168 BSGatlas transcript 369188 369716 . + . ID=BSGatlas-transcript-381;color=#FF9900;Parent=BSGatlas-operon-160,BSGatlas-gene-422;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-276 basu168 BSGatlas exon 369188 369716 . + . ID=BSGatlas-transcript-381_exon;Parent=BSGatlas-transcript-381 basu168 BSGatlas UTR 369188 369235 . + . ID=BSGatlas-5'UTR-222;Parent=BSGatlas-transcript-381;comment="5'UTR" basu168 BSGatlas TSS 369188 369188 . + . ID=BSGatlas-TSS-276;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 369236 369691 . + . ID=BSGatlas-gene-422;color=#1E90FF;Name=yckC;locus_tag=BSU03390,BSU_03390;Parent=BSGatlas-operon-160 basu168 BSGatlas CDS 369236 369691 . + 0 ID=BSGatlas-gene-422_transcribed;color=#1E90FF;Name=yckC;Parent=BSGatlas-transcript-381;comment="conserved integral membrane protein of unknownfunction";synonyms="yckC";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-422 basu168 BSGatlas terminator 369677 369716 . + . ID=BSGatlas-terminator-194;Parent=BSGatlas-transcript-381;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.5[kcal/mol]" basu168 BSGatlas UTR 369692 369716 . + . ID=BSGatlas-3'UTR-120;Parent=BSGatlas-transcript-381;comment="3'UTR" basu168 BSGatlas operon 369746 370150 . + . ID=BSGatlas-operon-161;color=#FF00CC basu168 BSGatlas transcript 369746 370150 . + . ID=BSGatlas-transcript-382;color=#FF9900;Parent=BSGatlas-operon-161,BSGatlas-gene-423;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-277 basu168 BSGatlas exon 369746 370150 . + . ID=BSGatlas-transcript-382_exon;Parent=BSGatlas-transcript-382 basu168 BSGatlas UTR 369746 369772 . + . ID=BSGatlas-5'UTR-223;Parent=BSGatlas-transcript-382;comment="5'UTR" basu168 BSGatlas TSS 369746 369746 . + . ID=BSGatlas-TSS-277;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 16497325" basu168 BSGatlas gene 369773 370105 . + . ID=BSGatlas-gene-423;color=#1E90FF;Name=yckD;locus_tag=BSU03400,BSU_03400;Parent=BSGatlas-operon-161 basu168 BSGatlas CDS 369773 370105 . + 0 ID=BSGatlas-gene-423_transcribed;color=#1E90FF;Name=yckD;Parent=BSGatlas-transcript-382;comment="putative exported protein";synonyms="yckD";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-423 basu168 BSGatlas terminator 370103 370150 . + . ID=BSGatlas-terminator-195;Parent=BSGatlas-transcript-382;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 370106 370150 . + . ID=BSGatlas-3'UTR-121;Parent=BSGatlas-transcript-382;comment="3'UTR" basu168 BSGatlas operon 370218 371736 . + . ID=BSGatlas-operon-162;color=#FF00CC basu168 BSGatlas transcript 370218 371736 . + . ID=BSGatlas-transcript-383;color=#FF9900;Parent=BSGatlas-operon-162,BSGatlas-gene-424;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-278 basu168 BSGatlas exon 370218 371736 . + . ID=BSGatlas-transcript-383_exon;Parent=BSGatlas-transcript-383 basu168 BSGatlas UTR 370218 370258 . + . ID=BSGatlas-5'UTR-224;Parent=BSGatlas-transcript-383;comment="5'UTR" basu168 BSGatlas TSS 370218 370218 . + . ID=BSGatlas-TSS-278;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 370259 371692 . + . ID=BSGatlas-gene-424;color=#1E90FF;Name=bglC;locus_tag=BSU03410,BSU_03410;Parent=BSGatlas-operon-162 basu168 BSGatlas CDS 370259 371692 . + 0 ID=BSGatlas-gene-424_transcribed;color=#1E90FF;Name=bglC;Parent=BSGatlas-transcript-383;comment="aryl-phospho-beta-d-glucosidase";synonyms="bglC,yckE";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.18 Utilization of beta-glucosides";ec="3.2.1.86,EC-3.2.1.21";go="GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0005975 carbohydrate metabolic process,GO:0008152 metabolic process,GO:0008706 6-phospho-beta-glucosidase activity,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds";derives_from=BSGatlas-gene-424 basu168 BSGatlas operon 371269 372846 . - . ID=BSGatlas-operon-163;color=#B32496 basu168 BSGatlas transcript 371269 372846 . - . ID=BSGatlas-transcript-386;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-426,BSGatlas-gene-425;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-282 basu168 BSGatlas exon 371269 372846 . - . ID=BSGatlas-transcript-386_exon;Parent=BSGatlas-transcript-386 basu168 BSGatlas transcript 371269 372626 . - . ID=BSGatlas-transcript-385;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-426,BSGatlas-gene-425;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-280 basu168 BSGatlas exon 371269 372626 . - . ID=BSGatlas-transcript-385_exon;Parent=BSGatlas-transcript-385 basu168 BSGatlas transcript 371269 372164 . - . ID=BSGatlas-transcript-384;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-425;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-279 basu168 BSGatlas exon 371269 372164 . - . ID=BSGatlas-transcript-384_exon;Parent=BSGatlas-transcript-384 basu168 BSGatlas UTR 371269 371728 . - . ID=BSGatlas-3'UTR-122;Parent=BSGatlas-transcript-384,BSGatlas-transcript-385,BSGatlas-transcript-386;comment="3'UTR" basu168 BSGatlas terminator 371269 371316 . - . ID=BSGatlas-terminator-196;Parent=BSGatlas-transcript-384,BSGatlas-transcript-385,BSGatlas-transcript-386;comment="Based on: BsubCyc,DBTBS, Energy: -7.3[kcal/mol]" basu168 BSGatlas transcript 371681 372846 . - . ID=BSGatlas-transcript-389;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-426,BSGatlas-gene-425;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-282 basu168 BSGatlas exon 371681 372846 . - . ID=BSGatlas-transcript-389_exon;Parent=BSGatlas-transcript-389 basu168 BSGatlas transcript 371681 372626 . - . ID=BSGatlas-transcript-388;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-426,BSGatlas-gene-425;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-280 basu168 BSGatlas exon 371681 372626 . - . ID=BSGatlas-transcript-388_exon;Parent=BSGatlas-transcript-388 basu168 BSGatlas transcript 371681 372164 . - . ID=BSGatlas-transcript-387;color=#B37924;Parent=BSGatlas-operon-163,BSGatlas-gene-425;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-279 basu168 BSGatlas exon 371681 372164 . - . ID=BSGatlas-transcript-387_exon;Parent=BSGatlas-transcript-387 basu168 BSGatlas UTR 371681 371728 . - . ID=BSGatlas-3'UTR-123;Parent=BSGatlas-transcript-387,BSGatlas-transcript-388,BSGatlas-transcript-389;comment="3'UTR" basu168 BSGatlas terminator 371681 371725 . - . ID=BSGatlas-terminator-197;Parent=BSGatlas-transcript-387,BSGatlas-transcript-388,BSGatlas-transcript-389;comment="Based on: BsubCyc,DBTBS, Energy: -18.4[kcal/mol]" basu168 BSGatlas terminator 371692 371736 . + . ID=BSGatlas-terminator-198;Parent=BSGatlas-transcript-383;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -18.3[kcal/mol]" basu168 BSGatlas UTR 371693 371736 . + . ID=BSGatlas-3'UTR-124;Parent=BSGatlas-transcript-383;comment="3'UTR" basu168 BSGatlas gene 371729 372127 . - . ID=BSGatlas-gene-425;color=#3474B3;Name=nin;locus_tag=BSU03420,BSU_03420;Parent=BSGatlas-operon-163 basu168 BSGatlas CDS 371729 372127 . - 0 ID=BSGatlas-gene-425_transcribed;color=#3474B3;Name=nin;Parent=BSGatlas-transcript-384,BSGatlas-transcript-385,BSGatlas-transcript-386,BSGatlas-transcript-387,BSGatlas-transcript-388,BSGatlas-transcript-389;comment="inhibitor of the DNA degrading activity of NucA(competence)";synonyms="comJ,nin";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.7 Genetic competence,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.3 Genetic competence,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0030420 establishment of competence for transformation";derives_from=BSGatlas-gene-425 basu168 BSGatlas UTR 372128 372164 . - . ID=BSGatlas-5'UTR-225;Parent=BSGatlas-transcript-384,BSGatlas-transcript-387;comment="5'UTR" basu168 BSGatlas UTR 372128 372153 . - . ID=BSGatlas-internal_UTR-148;Parent=BSGatlas-transcript-385,BSGatlas-transcript-386,BSGatlas-transcript-388,BSGatlas-transcript-389;comment="internal_UTR" basu168 BSGatlas gene 372154 372603 . - . ID=BSGatlas-gene-426;color=#3474B3;Name=nucA;locus_tag=BSU03430,BSU_03430;Parent=BSGatlas-operon-163 basu168 BSGatlas CDS 372154 372603 . - 0 ID=BSGatlas-gene-426_transcribed;color=#3474B3;Name=nucA;Parent=BSGatlas-transcript-385,BSGatlas-transcript-386,BSGatlas-transcript-388,BSGatlas-transcript-389;comment="endonuclease";synonyms="comI,nucA";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.7 Genetic competence,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.3 Genetic competence,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0004518 nuclease activity,GO:0005886 plasma membrane,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016787 hydrolase activity,GO:0030420 establishment of competence for transformation,GO:0090305 nucleic acid phosphodiester bond hydrolysis";derives_from=BSGatlas-gene-426 basu168 BSGatlas TSS 372164 372164 . - . ID=BSGatlas-TSS-279;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 372604 372846 . - . ID=BSGatlas-5'UTR-227;Parent=BSGatlas-transcript-386,BSGatlas-transcript-389;comment="5'UTR" basu168 BSGatlas UTR 372604 372626 . - . ID=BSGatlas-5'UTR-226;Parent=BSGatlas-transcript-385,BSGatlas-transcript-388;comment="5'UTR" basu168 BSGatlas TSS 372626 372626 . - . ID=BSGatlas-TSS-280;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 372771 374531 . - . ID=BSGatlas-operon-164;color=#B32496 basu168 BSGatlas transcript 372771 374531 . - . ID=BSGatlas-transcript-390;color=#B37924;Parent=BSGatlas-operon-164,BSGatlas-gene-427;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-283 basu168 BSGatlas exon 372771 374531 . - . ID=BSGatlas-transcript-390_exon;Parent=BSGatlas-transcript-390 basu168 BSGatlas gene 372771 374492 . - . ID=BSGatlas-gene-427;color=#3474B3;Name=tlpC;locus_tag=BSU03440,BSU_03440;Parent=BSGatlas-operon-164 basu168 BSGatlas CDS 372771 374492 . - 0 ID=BSGatlas-gene-427_transcribed;color=#3474B3;Name=tlpC;Parent=BSGatlas-transcript-390;comment="methyl-accepting chemotaxis protein (plantcolonization)";synonyms="tlpC";subtiwiki_category="SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.1 Motility and chemotaxis,SW 4.1.1.1 Signal transduction in motility and chemotaxis,SW 4.1.1.1.4 Membrane-bound chemoreceptors,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0004871 NA,GO:0005886 plasma membrane,GO:0006935 chemotaxis,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-427 basu168 BSGatlas TSS 372801 372801 . + . ID=BSGatlas-TSS-281;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 372846 372846 . - . ID=BSGatlas-TSS-282;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 374493 374531 . - . ID=BSGatlas-5'UTR-228;Parent=BSGatlas-transcript-390;comment="5'UTR" basu168 BSGatlas TSS 374531 374531 . - . ID=BSGatlas-TSS-283;color=#B32424;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 374557 375839 . - . ID=BSGatlas-operon-165;color=#B32496 basu168 BSGatlas transcript 374557 375839 . - . ID=BSGatlas-transcript-391;color=#B37924;Parent=BSGatlas-operon-165,BSGatlas-gene-429,BSGatlas-gene-428;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-284 basu168 BSGatlas exon 374557 375839 . - . ID=BSGatlas-transcript-391_exon;Parent=BSGatlas-transcript-391 basu168 BSGatlas UTR 374557 374602 . - . ID=BSGatlas-3'UTR-125;Parent=BSGatlas-transcript-391;comment="3'UTR" basu168 BSGatlas terminator 374557 374597 . - . ID=BSGatlas-terminator-199;Parent=BSGatlas-transcript-391;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.3[kcal/mol]" basu168 BSGatlas gene 374603 375160 . - . ID=BSGatlas-gene-428;color=#3474B3;Name=hxlB;locus_tag=BSU03450,BSU_03450;Parent=BSGatlas-operon-165 basu168 BSGatlas CDS 374603 375160 . - 0 ID=BSGatlas-gene-428_transcribed;color=#3474B3;Name=hxlB;Parent=BSGatlas-transcript-391;comment="6-phospho-3-hexuloisomerase (PHI)";synonyms="hxlB,yckF";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.8 Resistance against oxidative and electrophile stress";ec="5.3.1.27,EC-5.3.1.27";go="GO:0005975 carbohydrate metabolic process,GO:0009636 response to toxic substance,GO:0016853 isomerase activity,GO:0019647 formaldehyde assimilation via ribulose monophosphate cycle,GO:0030246 carbohydrate binding";derives_from=BSGatlas-gene-428 basu168 BSGatlas gene 375166 375798 . - . ID=BSGatlas-gene-429;color=#3474B3;Name=hxlA;locus_tag=BSU03460,BSU_03460;Parent=BSGatlas-operon-165 basu168 BSGatlas CDS 375166 375798 . - 0 ID=BSGatlas-gene-429_transcribed;color=#3474B3;Name=hxlA;Parent=BSGatlas-transcript-391;comment="3-hexulose-6-phosphate synthase (HPS)";synonyms="hxlA,yckG";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.8 Resistance against oxidative and electrophile stress";ec="4.1.2.43,EC-4.1.2.43";go="GO:0003824 catalytic activity,GO:0004590 orotidine-5'-phosphate decarboxylase activity,GO:0005975 carbohydrate metabolic process,GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process,GO:0006730 one-carbon metabolic process,GO:0008152 metabolic process,GO:0009636 response to toxic substance,GO:0016829 lyase activity,GO:0019647 formaldehyde assimilation via ribulose monophosphate cycle,GO:0043801 hexulose-6-phosphate synthase activity";derives_from=BSGatlas-gene-429 basu168 BSGatlas UTR 375799 375839 . - . ID=BSGatlas-5'UTR-229;Parent=BSGatlas-transcript-391;comment="5'UTR" basu168 BSGatlas TSS 375839 375839 . - . ID=BSGatlas-TSS-284;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 375946 376430 . + . ID=BSGatlas-operon-166;color=#FF00CC basu168 BSGatlas transcript 375946 376430 . + . ID=BSGatlas-transcript-392;color=#FF9900;Parent=BSGatlas-operon-166,BSGatlas-gene-430;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-285 basu168 BSGatlas exon 375946 376430 . + . ID=BSGatlas-transcript-392_exon;Parent=BSGatlas-transcript-392 basu168 BSGatlas UTR 375946 376031 . + . ID=BSGatlas-5'UTR-230;Parent=BSGatlas-transcript-392;comment="5'UTR" basu168 BSGatlas TSS 375946 375946 . + . ID=BSGatlas-TSS-285;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 376032 376394 . + . ID=BSGatlas-gene-430;color=#1E90FF;Name=hxlR;locus_tag=BSU03470,BSU_03470;Parent=BSGatlas-operon-166 basu168 BSGatlas CDS 376032 376394 . + 0 ID=BSGatlas-gene-430_transcribed;color=#1E90FF;Name=hxlR;Parent=BSGatlas-transcript-392;comment="positive regulator of hxlAB expression(formaldehyde sensing)";synonyms="hxlR,yckH";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.8 Resistance against oxidative and electrophile stress";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-430 basu168 BSGatlas terminator 376390 376430 . + . ID=BSGatlas-terminator-200;Parent=BSGatlas-transcript-392;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12[kcal/mol]" basu168 BSGatlas UTR 376395 376430 . + . ID=BSGatlas-3'UTR-126;Parent=BSGatlas-transcript-392;comment="3'UTR" basu168 BSGatlas operon 376678 376925 . + . ID=BSGatlas-operon-167;color=#FF00CC basu168 BSGatlas gene 376678 376925 . + . ID=BSGatlas-gene-431;color=#CC0000;Name=S126;locus_tag=new_376667_376967;Parent=BSGatlas-operon-167 basu168 BSGatlas transcript 376678 376925 . + . ID=BSGatlas-transcript-393;color=#FF9900;Parent=BSGatlas-operon-167,BSGatlas-gene-431;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-286 basu168 BSGatlas ncRNA 376678 376925 . + . ID=BSGatlas-gene-431_transcribed;color=#CC0000;Name=S126;Parent=BSGatlas-transcript-393;synonyms="S126";derives_from=BSGatlas-gene-431 basu168 BSGatlas exon 376678 376925 . + . ID=BSGatlas-transcript-393_exon;Parent=BSGatlas-transcript-393 basu168 BSGatlas TSS 376678 376678 . + . ID=BSGatlas-TSS-286;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 1715856,17962296" basu168 BSGatlas operon 376968 403160 . + . ID=BSGatlas-operon-168;color=#FF00CC basu168 BSGatlas transcript 376968 403160 . + . ID=BSGatlas-transcript-394;color=#FF9900;Parent=BSGatlas-operon-168,BSGatlas-gene-432,BSGatlas-gene-433,BSGatlas-gene-434,BSGatlas-gene-435,BSGatlas-gene-436;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 376968 403160 . + . ID=BSGatlas-transcript-394_exon;Parent=BSGatlas-transcript-394 basu168 BSGatlas gene 376968 387731 . + . ID=BSGatlas-gene-432;color=#1E90FF;Name=srfAA;locus_tag=BSU03480,BSU_03480;Parent=BSGatlas-operon-168 basu168 BSGatlas CDS 376968 387731 . + 0 ID=BSGatlas-gene-432_transcribed;color=#1E90FF;Name=srfAA;Parent=BSGatlas-transcript-394;comment="surfactin synthetase";synonyms="comL,srfAA";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.4 Swarming,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016874 ligase activity,GO:0017000 antibiotic biosynthetic process,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0031177 phosphopantetheine binding";derives_from=BSGatlas-gene-432 basu168 BSGatlas gene 387744 398495 . + . ID=BSGatlas-gene-433;color=#1E90FF;Name=srfAB;locus_tag=BSU03490,BSU_03490;Parent=BSGatlas-operon-168 basu168 BSGatlas CDS 387744 398495 . + 0 ID=BSGatlas-gene-433_transcribed;color=#1E90FF;Name=srfAB;Parent=BSGatlas-transcript-394;comment="surfactin synthetase";synonyms="comL,srfAB";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.4 Swarming,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016874 ligase activity,GO:0017000 antibiotic biosynthetic process,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0031177 phosphopantetheine binding";derives_from=BSGatlas-gene-433 basu168 BSGatlas gene 390880 391020 . + . ID=BSGatlas-gene-434;color=#1E90FF;Name=comS;locus_tag=BSU03500,BSU_03500;Parent=BSGatlas-operon-168 basu168 BSGatlas CDS 390880 391020 . + 0 ID=BSGatlas-gene-434_transcribed;color=#1E90FF;Name=comS;Parent=BSGatlas-transcript-394;comment="regulator of genetic competence";synonyms="comS";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.7 Genetic competence,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.3 Genetic competence,SW 6 Groups of genes,SW 6.8 Short peptides";go="GO:0030420 establishment of competence for transformation";derives_from=BSGatlas-gene-434 basu168 BSGatlas UTR 398496 398531 . + . ID=BSGatlas-internal_UTR-149;Parent=BSGatlas-transcript-394;comment="internal_UTR" basu168 BSGatlas gene 398532 402359 . + . ID=BSGatlas-gene-435;color=#1E90FF;Name=srfAC;locus_tag=BSU03510,BSU_03510;Parent=BSGatlas-operon-168 basu168 BSGatlas CDS 398532 402359 . + 0 ID=BSGatlas-gene-435_transcribed;color=#1E90FF;Name=srfAC;Parent=BSGatlas-transcript-394;comment="surfactin synthetase";synonyms="comL,srfAC";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.4 Swarming,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0009058 biosynthetic process,GO:0016788 hydrolase activity, acting on ester bonds,GO:0016874 ligase activity,GO:0017000 antibiotic biosynthetic process,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-435 basu168 BSGatlas UTR 402360 402387 . + . ID=BSGatlas-internal_UTR-150;Parent=BSGatlas-transcript-394;comment="internal_UTR" basu168 BSGatlas gene 402388 403116 . + . ID=BSGatlas-gene-436;color=#1E90FF;Name=srfAD;locus_tag=BSU03520,BSU_03520;Parent=BSGatlas-operon-168 basu168 BSGatlas CDS 402388 403116 . + 0 ID=BSGatlas-gene-436_transcribed;color=#1E90FF;Name=srfAD;Parent=BSGatlas-transcript-394;comment="surfactin synthetase";synonyms="comL,srfAD";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.4 Swarming,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds";go="GO:0005737 cytoplasm,GO:0006950 response to stress,GO:0009058 biosynthetic process,GO:0016787 hydrolase activity,GO:0016788 hydrolase activity, acting on ester bonds,GO:0017000 antibiotic biosynthetic process,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-436 basu168 BSGatlas UTR 403117 403160 . + . ID=BSGatlas-3'UTR-127;Parent=BSGatlas-transcript-394;comment="3'UTR" basu168 BSGatlas terminator 403118 403160 . + . ID=BSGatlas-terminator-201;Parent=BSGatlas-transcript-394;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.9[kcal/mol]" basu168 BSGatlas operon 403164 404485 . + . ID=BSGatlas-operon-169;color=#FF00CC basu168 BSGatlas transcript 403164 404485 . + . ID=BSGatlas-transcript-395;color=#FF9900;Parent=BSGatlas-operon-169,BSGatlas-gene-437;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-287 basu168 BSGatlas exon 403164 404485 . + . ID=BSGatlas-transcript-395_exon;Parent=BSGatlas-transcript-395 basu168 BSGatlas UTR 403164 403216 . + . ID=BSGatlas-5'UTR-231;Parent=BSGatlas-transcript-395;comment="5'UTR" basu168 BSGatlas TSS 403164 403164 . + . ID=BSGatlas-TSS-287;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 403217 404443 . + . ID=BSGatlas-gene-437;color=#1E90FF;Name=srfT;locus_tag=BSU03530,BSU_03530;Parent=BSGatlas-operon-169 basu168 BSGatlas CDS 403217 404443 . + 0 ID=BSGatlas-gene-437_transcribed;color=#1E90FF;Name=srfT;Parent=BSGatlas-transcript-395;comment="surfactin exporter";synonyms="ycxA";subtiwiki_category="SW 6 Groups of genes,SW 6.11 Efp-dependent proteins,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-437 basu168 BSGatlas operon 404431 406053 . - . ID=BSGatlas-operon-170;color=#B32496 basu168 BSGatlas transcript 404431 406053 . - . ID=BSGatlas-transcript-398;color=#B37924;Parent=BSGatlas-operon-170,BSGatlas-gene-439,BSGatlas-gene-438;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-290 basu168 BSGatlas exon 404431 406053 . - . ID=BSGatlas-transcript-398_exon;Parent=BSGatlas-transcript-398 basu168 BSGatlas transcript 404431 405046 . - . ID=BSGatlas-transcript-397;color=#B37924;Parent=BSGatlas-operon-170,BSGatlas-gene-438;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-289 basu168 BSGatlas exon 404431 405046 . - . ID=BSGatlas-transcript-397_exon;Parent=BSGatlas-transcript-397 basu168 BSGatlas transcript 404431 405015 . - . ID=BSGatlas-transcript-396;color=#B37924;Parent=BSGatlas-operon-170,BSGatlas-gene-438;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-288 basu168 BSGatlas exon 404431 405015 . - . ID=BSGatlas-transcript-396_exon;Parent=BSGatlas-transcript-396 basu168 BSGatlas terminator 404431 404475 . - . ID=BSGatlas-terminator-202;Parent=BSGatlas-transcript-396,BSGatlas-transcript-397,BSGatlas-transcript-398;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -18.1[kcal/mol]" basu168 BSGatlas UTR 404431 404457 . - . ID=BSGatlas-3'UTR-128;Parent=BSGatlas-transcript-396,BSGatlas-transcript-397,BSGatlas-transcript-398;comment="3'UTR" basu168 BSGatlas terminator 404441 404485 . + . ID=BSGatlas-terminator-203;Parent=BSGatlas-transcript-395;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16[kcal/mol]" basu168 BSGatlas UTR 404444 404485 . + . ID=BSGatlas-3'UTR-129;Parent=BSGatlas-transcript-395;comment="3'UTR" basu168 BSGatlas gene 404458 405015 . - . ID=BSGatlas-gene-438;color=#3474B3;Name=ycxB;locus_tag=BSU03540,BSU_03540;Parent=BSGatlas-operon-170 basu168 BSGatlas CDS 404458 405015 . - 0 ID=BSGatlas-gene-438_transcribed;color=#3474B3;Name=ycxB;Parent=BSGatlas-transcript-396,BSGatlas-transcript-397,BSGatlas-transcript-398;comment="hypothetical protein";synonyms="ycxB";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-438 basu168 BSGatlas TSS 404513 404513 . - . ID=BSGatlas-TSS-288;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 405016 405068 . - . ID=BSGatlas-internal_UTR-151;Parent=BSGatlas-transcript-398;comment="internal_UTR" basu168 BSGatlas UTR 405016 405046 . - . ID=BSGatlas-5'UTR-232;Parent=BSGatlas-transcript-397;comment="5'UTR" basu168 BSGatlas TSS 405046 405046 . - . ID=BSGatlas-TSS-289;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 405069 406007 . - . ID=BSGatlas-gene-439;color=#3474B3;Name=ycxC;locus_tag=BSU03550,BSU_03550;Parent=BSGatlas-operon-170 basu168 BSGatlas CDS 405069 406007 . - 0 ID=BSGatlas-gene-439_transcribed;color=#3474B3;Name=ycxC;Parent=BSGatlas-transcript-398;comment="putative permease";synonyms="ycxC";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-439 basu168 BSGatlas UTR 406008 406053 . - . ID=BSGatlas-5'UTR-233;Parent=BSGatlas-transcript-398;comment="5'UTR" basu168 BSGatlas TSS 406053 406053 . - . ID=BSGatlas-TSS-290;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 406131 407465 . + . ID=BSGatlas-operon-171;color=#FF00CC basu168 BSGatlas gene 406131 407465 . + . ID=BSGatlas-gene-440;color=#1E90FF;Name=ycxD;locus_tag=BSU03560,BSU_03560;Parent=BSGatlas-operon-171 basu168 BSGatlas transcript 406131 407465 . + . ID=BSGatlas-transcript-399;color=#FF9900;Parent=BSGatlas-operon-171,BSGatlas-gene-440;comment="Based on: BsubCyc" basu168 BSGatlas CDS 406131 407465 . + 0 ID=BSGatlas-gene-440_transcribed;color=#1E90FF;Name=ycxD;Parent=BSGatlas-transcript-399;comment="putative PLP-dependent transcriptionalregulator";synonyms="ycxD";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0003824 catalytic activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008483 transaminase activity,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-440 basu168 BSGatlas exon 406131 407465 . + . ID=BSGatlas-transcript-399_exon;Parent=BSGatlas-transcript-399 basu168 BSGatlas gene 407460 407627 . - . ID=BSGatlas-gene-441;color=#3474B3;Name=sfpAc;locus_tag=BSU03569,BSU_03569 basu168 BSGatlas CDS 407460 407627 . - 0 ID=BSGatlas-gene-441_transcribed;color=#3474B3;Name=sfpAc;comment="C-terminal part of 4'-phosphopantetheinyltransferase (Surfactin synthetase-activating enzyme)";synonyms="sfp,sfp/1";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.2 Biofilm formation,SW 4.1.2.5 Other proteins required for biofilm formation,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds,SW 6 Groups of genes,SW 6.10 Pseudogenes";ec="2.7.8.-";derives_from=BSGatlas-gene-441 basu168 BSGatlas operon 407638 408174 . - . ID=BSGatlas-operon-172;color=#B32496 basu168 BSGatlas transcript 407638 408174 . - . ID=BSGatlas-transcript-400;color=#B37924;Parent=BSGatlas-operon-172,BSGatlas-gene-442;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-291 basu168 BSGatlas exon 407638 408174 . - . ID=BSGatlas-transcript-400_exon;Parent=BSGatlas-transcript-400 basu168 BSGatlas gene 407638 408135 . - . ID=BSGatlas-gene-442;color=#3474B3;Name=sfpAn;locus_tag=BSU03570,BSU_03570;Parent=BSGatlas-operon-172 basu168 BSGatlas CDS 407638 408135 . - 0 ID=BSGatlas-gene-442_transcribed;color=#3474B3;Name=sfpAn;Parent=BSGatlas-transcript-400;comment="N-terminal part of 4'-phosphopantetheinyltransferase (surfactin synthetase-activating enzyme)";synonyms="sfp,sfp/2";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.6 Miscellaneous metabolic pathways,SW 2.6.6.1 Biosynthesis of antibacterial compounds,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.2 Biofilm formation,SW 4.1.2.5 Other proteins required for biofilm formation,SW 4.3 Coping with stress,SW 4.3.15 Biosynthesis of antibacterial compounds,SW 6 Groups of genes,SW 6.10 Pseudogenes";ec="2.7.8.-";derives_from=BSGatlas-gene-442 basu168 BSGatlas UTR 408136 408174 . - . ID=BSGatlas-5'UTR-234;Parent=BSGatlas-transcript-400;comment="5'UTR" basu168 BSGatlas TSS 408174 408174 . - . ID=BSGatlas-TSS-291;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 408204 408919 . - . ID=BSGatlas-operon-173;color=#B32496 basu168 BSGatlas transcript 408204 408919 . - . ID=BSGatlas-transcript-401;color=#B37924;Parent=BSGatlas-operon-173,BSGatlas-gene-443;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-292 basu168 BSGatlas exon 408204 408919 . - . ID=BSGatlas-transcript-401_exon;Parent=BSGatlas-transcript-401 basu168 BSGatlas terminator 408204 408242 . - . ID=BSGatlas-terminator-204;Parent=BSGatlas-transcript-401;comment="Based on: BsubCyc,DBTBS, Energy: -11.9[kcal/mol]" basu168 BSGatlas UTR 408204 408239 . - . ID=BSGatlas-3'UTR-130;Parent=BSGatlas-transcript-401;comment="3'UTR" basu168 BSGatlas gene 408240 408887 . - . ID=BSGatlas-gene-443;color=#3474B3;Name=yczE;locus_tag=BSU03580,BSU_03580;Parent=BSGatlas-operon-173 basu168 BSGatlas CDS 408240 408887 . - 0 ID=BSGatlas-gene-443_transcribed;color=#3474B3;Name=yczE;Parent=BSGatlas-transcript-401;comment="integral inner membrane protein regulatingantibiotic production";synonyms="yczE";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-443 basu168 BSGatlas UTR 408888 408919 . - . ID=BSGatlas-5'UTR-235;Parent=BSGatlas-transcript-401;comment="5'UTR" basu168 BSGatlas TSS 408919 408919 . - . ID=BSGatlas-TSS-292;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 409023 411523 . - . ID=BSGatlas-operon-174;color=#B32496 basu168 BSGatlas transcript 409023 411523 . - . ID=BSGatlas-transcript-402;color=#B37924;Parent=BSGatlas-operon-174,BSGatlas-gene-446,BSGatlas-gene-445,BSGatlas-gene-444;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-293 basu168 BSGatlas exon 409023 411523 . - . ID=BSGatlas-transcript-402_exon;Parent=BSGatlas-transcript-402 basu168 BSGatlas UTR 409023 409207 . - . ID=BSGatlas-3'UTR-131;Parent=BSGatlas-transcript-402;comment="3'UTR" basu168 BSGatlas terminator 409023 409089 . - . ID=BSGatlas-terminator-205;Parent=BSGatlas-transcript-402;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas transcript 409122 411523 . - . ID=BSGatlas-transcript-403;color=#B37924;Parent=BSGatlas-operon-174,BSGatlas-gene-446,BSGatlas-gene-445,BSGatlas-gene-444;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-293 basu168 BSGatlas exon 409122 411523 . - . ID=BSGatlas-transcript-403_exon;Parent=BSGatlas-transcript-403 basu168 BSGatlas UTR 409122 409207 . - . ID=BSGatlas-3'UTR-132;Parent=BSGatlas-transcript-403;comment="3'UTR" basu168 BSGatlas terminator 409122 409166 . - . ID=BSGatlas-terminator-206;Parent=BSGatlas-transcript-403;comment="Based on: BsubCyc,DBTBS, Energy: -16.4[kcal/mol]" basu168 BSGatlas transcript 409208 411523 . - . ID=BSGatlas-transcript-404;color=#B37924;Parent=BSGatlas-operon-174,BSGatlas-gene-446,BSGatlas-gene-445,BSGatlas-gene-444;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-293 basu168 BSGatlas exon 409208 411523 . - . ID=BSGatlas-transcript-404_exon;Parent=BSGatlas-transcript-404 basu168 BSGatlas gene 409208 409951 . - . ID=BSGatlas-gene-444;color=#3474B3;Name=tcyC;locus_tag=BSU03590,BSU_03590;Parent=BSGatlas-operon-174 basu168 BSGatlas CDS 409208 409951 . - 0 ID=BSGatlas-gene-444_transcribed;color=#3474B3;Name=tcyC;Parent=BSGatlas-transcript-402,BSGatlas-transcript-403,BSGatlas-transcript-404;comment="cystine ABC transporter (ATP-binding protein)";synonyms="tcyC,yckI";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.2 Uptake of amino acids,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.9 Biosynthesis/ acquisition of cysteine,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0008152 metabolic process,GO:0016020 membrane,GO:0016787 hydrolase activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-444 basu168 BSGatlas terminator 409242 409286 . - . ID=BSGatlas-terminator-207;Parent=BSGatlas-transcript-404;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas gene 409965 410669 . - . ID=BSGatlas-gene-445;color=#3474B3;Name=tcyB;locus_tag=BSU03600,BSU_03600;Parent=BSGatlas-operon-174 basu168 BSGatlas CDS 409965 410669 . - 0 ID=BSGatlas-gene-445_transcribed;color=#3474B3;Name=tcyB;Parent=BSGatlas-transcript-402,BSGatlas-transcript-403,BSGatlas-transcript-404;comment="cystine ABC transporter (permease)";synonyms="tcyB,yckJ";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.2 Uptake of amino acids,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.9 Biosynthesis/ acquisition of cysteine,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-445 basu168 BSGatlas gene 410656 411462 . - . ID=BSGatlas-gene-446;color=#3474B3;Name=tcyA;locus_tag=BSU03610,BSU_03610;Parent=BSGatlas-operon-174 basu168 BSGatlas CDS 410656 411462 . - 0 ID=BSGatlas-gene-446_transcribed;color=#3474B3;Name=tcyA;Parent=BSGatlas-transcript-402,BSGatlas-transcript-403,BSGatlas-transcript-404;comment="cystine ABC transporter (substrate-bindinglipoprotein)";synonyms="tcyA,yckK";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.2 Uptake of amino acids,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.9 Biosynthesis/ acquisition of cysteine,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0016020 membrane,GO:0030288 outer membrane-bounded periplasmic space";derives_from=BSGatlas-gene-446 basu168 BSGatlas UTR 411463 411523 . - . ID=BSGatlas-5'UTR-236;Parent=BSGatlas-transcript-402,BSGatlas-transcript-403,BSGatlas-transcript-404;comment="5'UTR" basu168 BSGatlas TSS 411523 411523 . - . ID=BSGatlas-TSS-293;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 411578 412525 . - . ID=BSGatlas-operon-175;color=#B32496 basu168 BSGatlas transcript 411578 412525 . - . ID=BSGatlas-transcript-406;color=#B37924;Parent=BSGatlas-operon-175,BSGatlas-gene-447;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-295 basu168 BSGatlas exon 411578 412525 . - . ID=BSGatlas-transcript-406_exon;Parent=BSGatlas-transcript-406 basu168 BSGatlas gene 411578 412450 . - . ID=BSGatlas-gene-447;color=#3474B3;Name=bsdA;locus_tag=BSU03620,BSU_03620;Parent=BSGatlas-operon-175 basu168 BSGatlas transcript 411578 412450 . - . ID=BSGatlas-transcript-405;color=#B37924;Parent=BSGatlas-operon-175,BSGatlas-gene-447;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-294 basu168 BSGatlas CDS 411578 412450 . - 0 ID=BSGatlas-gene-447_transcribed;color=#3474B3;Name=bsdA;Parent=BSGatlas-transcript-405,BSGatlas-transcript-406;comment="HTH-type transcriptional regulator BsdA (LysRfamily)";synonyms="bsdA,yclA";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-447 basu168 BSGatlas exon 411578 412450 . - . ID=BSGatlas-transcript-405_exon;Parent=BSGatlas-transcript-405 basu168 BSGatlas TSS 412195 412195 . - . ID=BSGatlas-TSS-294;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 412451 412525 . - . ID=BSGatlas-5'UTR-237;Parent=BSGatlas-transcript-406;comment="5'UTR" basu168 BSGatlas TSS 412525 412525 . - . ID=BSGatlas-TSS-295;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 412533 412533 . + . ID=BSGatlas-TSS-296;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 412540 414822 . + . ID=BSGatlas-operon-176;color=#FF00CC basu168 BSGatlas transcript 412540 414822 . + . ID=BSGatlas-transcript-407;color=#FF9900;Parent=BSGatlas-operon-176,BSGatlas-gene-448,BSGatlas-gene-449,BSGatlas-gene-450;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-296 basu168 BSGatlas exon 412540 414822 . + . ID=BSGatlas-transcript-407_exon;Parent=BSGatlas-transcript-407 basu168 BSGatlas gene 412540 413154 . + . ID=BSGatlas-gene-448;color=#1E90FF;Name=ubiX;locus_tag=BSU03630,BSU_03630;Parent=BSGatlas-operon-176 basu168 BSGatlas CDS 412540 413154 . + 0 ID=BSGatlas-gene-448_transcribed;color=#1E90FF;Name=ubiX;Parent=BSGatlas-transcript-407;comment="phenolic acid decarboxylase-flavinprenyltransferase subunit";synonyms="bsdB,yclB";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)";ec="4.1.1.-;4.1.1.61,EC-4.1.1.98";go="GO:0003824 catalytic activity,GO:0009636 response to toxic substance,GO:0016829 lyase activity,GO:0016831 carboxy-lyase activity,GO:0018799 4-hydroxybenzoate decarboxylase activity,GO:0019439 aromatic compound catabolic process";derives_from=BSGatlas-gene-448 basu168 BSGatlas gene 413157 414578 . + . ID=BSGatlas-gene-449;color=#1E90FF;Name=bsdC;locus_tag=BSU03640,BSU_03640;Parent=BSGatlas-operon-176 basu168 BSGatlas CDS 413157 414578 . + 0 ID=BSGatlas-gene-449_transcribed;color=#1E90FF;Name=bsdC;Parent=BSGatlas-transcript-407;comment="promiscuous phenolic acid decarboxylase subunit;1,4-dihydroxy-2-naphtoate-heptaprenyl diphosphatedecarboxylase";synonyms="bsdC,yclC";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)";ec="4.1.1.61;4.1.1.-,EC-4.1.1.98";go="GO:0005886 plasma membrane,GO:0006744 ubiquinone biosynthetic process,GO:0009636 response to toxic substance,GO:0010181 FMN binding,GO:0016491 oxidoreductase activity,GO:0016829 lyase activity,GO:0016831 carboxy-lyase activity,GO:0018799 4-hydroxybenzoate decarboxylase activity,GO:0019439 aromatic compound catabolic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-449 basu168 BSGatlas UTR 414579 414594 . + . ID=BSGatlas-internal_UTR-152;Parent=BSGatlas-transcript-407;comment="internal_UTR" basu168 BSGatlas gene 414595 414822 . + . ID=BSGatlas-gene-450;color=#1E90FF;Name=bsdD;locus_tag=BSU03651,BSU_03651;Parent=BSGatlas-operon-176 basu168 BSGatlas CDS 414595 414822 . + 0 ID=BSGatlas-gene-450_transcribed;color=#1E90FF;Name=bsdD;Parent=BSGatlas-transcript-407;comment="phenolic acid decarboxylase subunit";synonyms="bsdD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)";ec="4.1.1.91;4.1.1.-;4.1.1.61";go="GO:0009636 response to toxic substance,GO:0016829 lyase activity,GO:0016831 carboxy-lyase activity,GO:0018799 4-hydroxybenzoate decarboxylase activity,GO:0019439 aromatic compound catabolic process";derives_from=BSGatlas-gene-450 basu168 BSGatlas operon 414819 415283 . + . ID=BSGatlas-operon-177;color=#FF00CC basu168 BSGatlas gene 414819 415283 . + . ID=BSGatlas-gene-451;color=#1E90FF;Name=yclD;locus_tag=BSU03652,BSU_03652;Parent=BSGatlas-operon-177 basu168 BSGatlas transcript 414819 415283 . + . ID=BSGatlas-transcript-408;color=#FF9900;Parent=BSGatlas-operon-177,BSGatlas-gene-451;comment="Based on: BSGatlas" basu168 BSGatlas CDS 414819 415283 . + 0 ID=BSGatlas-gene-451_transcribed;color=#1E90FF;Name=yclD;Parent=BSGatlas-transcript-408;comment="putative FMN-binding enzyme subunit";synonyms="yclD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)";go="GO:0010181 FMN binding,GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-451 basu168 BSGatlas exon 414819 415283 . + . ID=BSGatlas-transcript-408_exon;Parent=BSGatlas-transcript-408 basu168 BSGatlas terminator 415242 415286 . + . ID=BSGatlas-terminator-208;Parent=BSGatlas-transcript-408;comment="Based on: Nicolas et al. downshift, Energy: -15.1[kcal/mol]" basu168 BSGatlas operon 415291 416242 . + . ID=BSGatlas-operon-178;color=#FF00CC basu168 BSGatlas transcript 415291 416242 . + . ID=BSGatlas-transcript-409;color=#FF9900;Parent=BSGatlas-operon-178,BSGatlas-gene-452;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-297 basu168 BSGatlas exon 415291 416242 . + . ID=BSGatlas-transcript-409_exon;Parent=BSGatlas-transcript-409 basu168 BSGatlas UTR 415291 415349 . + . ID=BSGatlas-5'UTR-238;Parent=BSGatlas-transcript-409;comment="5'UTR" basu168 BSGatlas TSS 415291 415291 . + . ID=BSGatlas-TSS-297;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 415350 416195 . + . ID=BSGatlas-gene-452;color=#1E90FF;Name=yclE;locus_tag=BSU03660,BSU_03660;Parent=BSGatlas-operon-178 basu168 BSGatlas CDS 415350 416195 . + 0 ID=BSGatlas-gene-452_transcribed;color=#1E90FF;Name=yclE;Parent=BSGatlas-transcript-409;comment="putative hydrolase";synonyms="yclE";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-452 basu168 BSGatlas operon 416185 418277 . - . ID=BSGatlas-operon-179;color=#B32496 basu168 BSGatlas transcript 416185 418277 . - . ID=BSGatlas-transcript-411;color=#B37924;Parent=BSGatlas-operon-179,BSGatlas-gene-453;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-301 basu168 BSGatlas exon 416185 418277 . - . ID=BSGatlas-transcript-411_exon;Parent=BSGatlas-transcript-411 basu168 BSGatlas transcript 416185 417761 . - . ID=BSGatlas-transcript-410;color=#B37924;Parent=BSGatlas-operon-179,BSGatlas-gene-453;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-299 basu168 BSGatlas exon 416185 417761 . - . ID=BSGatlas-transcript-410_exon;Parent=BSGatlas-transcript-410 basu168 BSGatlas UTR 416185 416234 . - . ID=BSGatlas-3'UTR-133;Parent=BSGatlas-transcript-410,BSGatlas-transcript-411;comment="3'UTR" basu168 BSGatlas terminator 416185 416232 . - . ID=BSGatlas-terminator-209;Parent=BSGatlas-transcript-410,BSGatlas-transcript-411;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -25.2[kcal/mol]" basu168 BSGatlas terminator 416195 416242 . + . ID=BSGatlas-terminator-210;Parent=BSGatlas-transcript-409;comment="Based on: BsubCyc,DBTBS, Energy: -20.1[kcal/mol]" basu168 BSGatlas UTR 416196 416242 . + . ID=BSGatlas-3'UTR-134;Parent=BSGatlas-transcript-409;comment="3'UTR" basu168 BSGatlas gene 416235 417713 . - . ID=BSGatlas-gene-453;color=#3474B3;Name=dtpT;locus_tag=BSU03670,BSU_03670;Parent=BSGatlas-operon-179 basu168 BSGatlas CDS 416235 417713 . - 0 ID=BSGatlas-gene-453_transcribed;color=#3474B3;Name=dtpT;Parent=BSGatlas-transcript-410,BSGatlas-transcript-411;comment="di-tripeptide-proton ABC symporter";synonyms="dtpT,yclF";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.2 Peptide transporter,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.3 Utilization of nitrogen sources other than amino acids,SW 2.3.3.4 Utilization of peptides,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006857 oligopeptide transport,GO:0015197 NA,GO:0015833 peptide transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-453 basu168 BSGatlas UTR 417714 418277 . - . ID=BSGatlas-5'UTR-240;Parent=BSGatlas-transcript-411;comment="5'UTR" basu168 BSGatlas UTR 417714 417761 . - . ID=BSGatlas-5'UTR-239;Parent=BSGatlas-transcript-410;comment="5'UTR" basu168 BSGatlas operon 417751 419747 . + . ID=BSGatlas-operon-180;color=#FF00CC basu168 BSGatlas transcript 417751 419747 . + . ID=BSGatlas-transcript-412;color=#FF9900;Parent=BSGatlas-operon-180,BSGatlas-gene-454;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-298 basu168 BSGatlas exon 417751 419747 . + . ID=BSGatlas-transcript-412_exon;Parent=BSGatlas-transcript-412 basu168 BSGatlas UTR 417751 417992 . + . ID=BSGatlas-5'UTR-241;Parent=BSGatlas-transcript-412;comment="5'UTR" basu168 BSGatlas TSS 417751 417751 . + . ID=BSGatlas-TSS-298;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 417761 417761 . - . ID=BSGatlas-TSS-299;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 417954 419747 . + . ID=BSGatlas-transcript-413;color=#FF9900;Parent=BSGatlas-operon-180,BSGatlas-gene-454;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-300 basu168 BSGatlas exon 417954 419747 . + . ID=BSGatlas-transcript-413_exon;Parent=BSGatlas-transcript-413 basu168 BSGatlas UTR 417954 417992 . + . ID=BSGatlas-5'UTR-242;Parent=BSGatlas-transcript-413;comment="5'UTR" basu168 BSGatlas TSS 417954 417954 . + . ID=BSGatlas-TSS-300;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 417993 419747 . + . ID=BSGatlas-gene-454;color=#1E90FF;Name=yclG;locus_tag=BSU03680,BSU_03680;Parent=BSGatlas-operon-180 basu168 BSGatlas CDS 417993 419747 . + 0 ID=BSGatlas-gene-454_transcribed;color=#1E90FF;Name=yclG;Parent=BSGatlas-transcript-412,BSGatlas-transcript-413;comment="putative uronase";synonyms="yclG";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-454 basu168 BSGatlas TSS 418277 418277 . - . ID=BSGatlas-TSS-301;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 419716 419760 . + . ID=BSGatlas-terminator-211;Parent=BSGatlas-transcript-412,BSGatlas-transcript-413;comment="Based on: Nicolas et al. downshift, Energy: -5.4[kcal/mol]" basu168 BSGatlas operon 419763 420005 . - . ID=BSGatlas-operon-181;color=#B32496 basu168 BSGatlas transcript 419763 420005 . - . ID=BSGatlas-transcript-414;color=#B37924;Parent=BSGatlas-operon-181,BSGatlas-gene-455;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-302 basu168 BSGatlas exon 419763 420005 . - . ID=BSGatlas-transcript-414_exon;Parent=BSGatlas-transcript-414 basu168 BSGatlas gene 419763 419984 . - . ID=BSGatlas-gene-455;color=#3474B3;Name=yczF;locus_tag=BSU03690,BSU_03690;Parent=BSGatlas-operon-181 basu168 BSGatlas CDS 419763 419984 . - 0 ID=BSGatlas-gene-455_transcribed;color=#3474B3;Name=yczF;Parent=BSGatlas-transcript-414;comment="conserved protein of unknown function";synonyms="gerKD,yczF";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.1 Germinant receptors,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-455 basu168 BSGatlas UTR 419985 420005 . - . ID=BSGatlas-5'UTR-243;Parent=BSGatlas-transcript-414;comment="5'UTR" basu168 BSGatlas TSS 420005 420005 . - . ID=BSGatlas-TSS-302;color=#B32424;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 420089 424149 . + . ID=BSGatlas-operon-182;color=#FF00CC basu168 BSGatlas transcript 420089 424149 . + . ID=BSGatlas-transcript-415;color=#FF9900;Parent=BSGatlas-operon-182,BSGatlas-gene-456,BSGatlas-gene-457,BSGatlas-gene-458;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-303 basu168 BSGatlas exon 420089 424149 . + . ID=BSGatlas-transcript-415_exon;Parent=BSGatlas-transcript-415 basu168 BSGatlas UTR 420089 420109 . + . ID=BSGatlas-5'UTR-244;Parent=BSGatlas-transcript-415;comment="5'UTR" basu168 BSGatlas TSS 420089 420089 . + . ID=BSGatlas-TSS-303;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 16707705,17962296" basu168 BSGatlas gene 420110 421744 . + . ID=BSGatlas-gene-456;color=#1E90FF;Name=gerKA;locus_tag=BSU03700,BSU_03700;Parent=BSGatlas-operon-182 basu168 BSGatlas CDS 420110 421744 . + 0 ID=BSGatlas-gene-456_transcribed;color=#1E90FF;Name=gerKA;Parent=BSGatlas-transcript-415;comment="spore germination receptor subunit";synonyms="gerKA";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.1 Germinant receptors,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0009847 spore germination,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-456 basu168 BSGatlas gene 421734 422957 . + . ID=BSGatlas-gene-457;color=#1E90FF;Name=gerKC;locus_tag=BSU03710,BSU_03710;Parent=BSGatlas-operon-182 basu168 BSGatlas CDS 421734 422957 . + 0 ID=BSGatlas-gene-457_transcribed;color=#1E90FF;Name=gerKC;Parent=BSGatlas-transcript-415;comment="spore germination receptor subunit";synonyms="gerKC";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.1 Germinant receptors,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0009847 spore germination,GO:0016020 membrane";derives_from=BSGatlas-gene-457 basu168 BSGatlas UTR 422958 422981 . + . ID=BSGatlas-internal_UTR-153;Parent=BSGatlas-transcript-415;comment="internal_UTR" basu168 BSGatlas gene 422982 424103 . + . ID=BSGatlas-gene-458;color=#1E90FF;Name=gerKB;locus_tag=BSU03720,BSU_03720;Parent=BSGatlas-operon-182 basu168 BSGatlas CDS 422982 424103 . + 0 ID=BSGatlas-gene-458_transcribed;color=#1E90FF;Name=gerKB;Parent=BSGatlas-transcript-415;comment="spore germination receptor subunit";synonyms="gerKB";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.1 Germinant receptors,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0009847 spore germination,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-458 basu168 BSGatlas terminator 424094 424149 . + . ID=BSGatlas-terminator-212;Parent=BSGatlas-transcript-415;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 424104 424149 . + . ID=BSGatlas-3'UTR-135;Parent=BSGatlas-transcript-415;comment="3'UTR" basu168 BSGatlas operon 424208 426364 . - . ID=BSGatlas-operon-183;color=#B32496 basu168 BSGatlas transcript 424208 426364 . - . ID=BSGatlas-transcript-416;color=#B37924;Parent=BSGatlas-operon-183,BSGatlas-gene-460,BSGatlas-gene-459;comment="Based on: SubtiWiki" basu168 BSGatlas exon 424208 426364 . - . ID=BSGatlas-transcript-416_exon;Parent=BSGatlas-transcript-416 basu168 BSGatlas gene 424208 424888 . - . ID=BSGatlas-gene-459;color=#3474B3;Name=yclH;locus_tag=BSU03730,BSU_03730;Parent=BSGatlas-operon-183 basu168 BSGatlas CDS 424208 424888 . - 0 ID=BSGatlas-gene-459_transcribed;color=#3474B3;Name=yclH;Parent=BSGatlas-transcript-416;comment="putative ABC transporter (ATPase component)";synonyms="yclH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.6 Exporters of unknown function,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0008152 metabolic process,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-459 basu168 BSGatlas gene 424904 426364 . - . ID=BSGatlas-gene-460;color=#3474B3;Name=yclI;locus_tag=BSU03740,BSU_03740;Parent=BSGatlas-operon-183 basu168 BSGatlas CDS 424904 426364 . - 0 ID=BSGatlas-gene-460_transcribed;color=#3474B3;Name=yclI;Parent=BSGatlas-transcript-416;comment="putative transporter";synonyms="yclI";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.6 Exporters of unknown function,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-460 basu168 BSGatlas operon 426537 428668 . + . ID=BSGatlas-operon-184;color=#FF00CC basu168 BSGatlas transcript 426537 428668 . + . ID=BSGatlas-transcript-417;color=#FF9900;Parent=BSGatlas-operon-184,BSGatlas-gene-461,BSGatlas-gene-462;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-304 basu168 BSGatlas exon 426537 428668 . + . ID=BSGatlas-transcript-417_exon;Parent=BSGatlas-transcript-417 basu168 BSGatlas UTR 426537 426576 . + . ID=BSGatlas-5'UTR-245;Parent=BSGatlas-transcript-417;comment="5'UTR" basu168 BSGatlas TSS 426537 426537 . + . ID=BSGatlas-TSS-304;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 426577 427260 . + . ID=BSGatlas-gene-461;color=#1E90FF;Name=yclJ;locus_tag=BSU03750,BSU_03750;Parent=BSGatlas-operon-184 basu168 BSGatlas CDS 426577 427260 . + 0 ID=BSGatlas-gene-461_transcribed;color=#1E90FF;Name=yclJ;Parent=BSGatlas-transcript-417;comment="two-component response regulator [YclK](possibly involved in arabinogalactan metabolism)";synonyms="yclJ";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-461 basu168 BSGatlas gene 427247 428668 . + . ID=BSGatlas-gene-462;color=#1E90FF;Name=yclK;locus_tag=BSU03760,BSU_03760;Parent=BSGatlas-operon-184 basu168 BSGatlas CDS 427247 428668 . + 0 ID=BSGatlas-gene-462_transcribed;color=#1E90FF;Name=yclK;Parent=BSGatlas-transcript-417;comment="two-component sensor histidine kinase [YclJ]";synonyms="yclK";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000155 phosphorelay sensor kinase activity,GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0004871 NA,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups,GO:0018106 peptidyl-histidine phosphorylation,GO:0023014 signal transduction by protein phosphorylation";derives_from=BSGatlas-gene-462 basu168 BSGatlas terminator 428622 428666 . + . ID=BSGatlas-terminator-213;Parent=BSGatlas-transcript-417;comment="Based on: Nicolas et al. downshift, Energy: -15[kcal/mol]" basu168 BSGatlas operon 428799 430131 . + . ID=BSGatlas-operon-185;color=#FF00CC basu168 BSGatlas transcript 428799 430131 . + . ID=BSGatlas-transcript-418;color=#FF9900;Parent=BSGatlas-operon-185,BSGatlas-gene-463,BSGatlas-gene-464;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-305 basu168 BSGatlas exon 428799 430131 . + . ID=BSGatlas-transcript-418_exon;Parent=BSGatlas-transcript-418 basu168 BSGatlas UTR 428799 428830 . + . ID=BSGatlas-5'UTR-246;Parent=BSGatlas-transcript-418;comment="5'UTR" basu168 BSGatlas TSS 428799 428799 . + . ID=BSGatlas-TSS-305;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10464187,17962296" basu168 BSGatlas operon 428805 430501 . - . ID=BSGatlas-operon-186;color=#B32496 basu168 BSGatlas transcript 428805 430501 . - . ID=BSGatlas-transcript-419;color=#B37924;Parent=BSGatlas-operon-186,BSGatlas-gene-466,BSGatlas-gene-465;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-308 basu168 BSGatlas exon 428805 430501 . - . ID=BSGatlas-transcript-419_exon;Parent=BSGatlas-transcript-419 basu168 BSGatlas UTR 428805 430184 . - . ID=BSGatlas-3'UTR-136;Parent=BSGatlas-transcript-419;comment="3'UTR" basu168 BSGatlas terminator 428805 428849 . - . ID=BSGatlas-terminator-214;Parent=BSGatlas-transcript-419;comment="Based on: Nicolas et al. downshift, Energy: -10.3[kcal/mol]" basu168 BSGatlas gene 428831 429979 . + . ID=BSGatlas-gene-463;color=#1E90FF;Name=rapC;locus_tag=BSU03770,BSU_03770;Parent=BSGatlas-operon-185 basu168 BSGatlas CDS 428831 429979 . + 0 ID=BSGatlas-gene-463_transcribed;color=#1E90FF;Name=rapC;Parent=BSGatlas-transcript-418;comment="response regulator aspartate phosphatase";synonyms="rapC,yclL";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.7 Genetic competence,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.2 Response regulator aspartate phosphatase,SW 3.4.8 Quorum sensing,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.3 Genetic competence";go="GO:0004721 phosphoprotein phosphatase activity,GO:0008152 metabolic process,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-463 basu168 BSGatlas transcript 429697 430131 . + . ID=BSGatlas-transcript-420;color=#FF9900;Parent=BSGatlas-operon-185,BSGatlas-gene-464;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-306 basu168 BSGatlas exon 429697 430131 . + . ID=BSGatlas-transcript-420_exon;Parent=BSGatlas-transcript-420 basu168 BSGatlas UTR 429697 429962 . + . ID=BSGatlas-5'UTR-247;Parent=BSGatlas-transcript-420;comment="5'UTR" basu168 BSGatlas TSS 429697 429697 . + . ID=BSGatlas-TSS-306;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 429880 430131 . + . ID=BSGatlas-transcript-421;color=#FF9900;Parent=BSGatlas-operon-185,BSGatlas-gene-464;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-307 basu168 BSGatlas exon 429880 430131 . + . ID=BSGatlas-transcript-421_exon;Parent=BSGatlas-transcript-421 basu168 BSGatlas UTR 429880 429962 . + . ID=BSGatlas-5'UTR-248;Parent=BSGatlas-transcript-421;comment="5'UTR" basu168 BSGatlas TSS 429880 429880 . + . ID=BSGatlas-TSS-307;color=#FF0000;comment="Simga: H, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10464187,1702397" basu168 BSGatlas gene 429963 430085 . + . ID=BSGatlas-gene-464;color=#1E90FF;Name=phrC;locus_tag=BSU03780,BSU_03780;Parent=BSGatlas-operon-185 basu168 BSGatlas CDS 429963 430085 . + 0 ID=BSGatlas-gene-464_transcribed;color=#1E90FF;Name=phrC;Parent=BSGatlas-transcript-418,BSGatlas-transcript-420,BSGatlas-transcript-421;comment="secreted regulator of the activity ofphosphatase RapC and competence and sporulationstimulating factor (CSF)";synonyms="phrC";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.7 Genetic competence,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.3 Control of response regulators/ other,SW 3.4.8 Quorum sensing,SW 4 Lifestyles,SW 4.1 Exponential and early post-exponential lifestyles,SW 4.1.3 Genetic competence,SW 6 Groups of genes,SW 6.8 Short peptides";go="GO:0052106 quorum sensing involved in interaction with host";derives_from=BSGatlas-gene-464 basu168 BSGatlas UTR 430086 430131 . + . ID=BSGatlas-3'UTR-137;Parent=BSGatlas-transcript-418,BSGatlas-transcript-420,BSGatlas-transcript-421;comment="3'UTR" basu168 BSGatlas terminator 430088 430131 . + . ID=BSGatlas-terminator-215;Parent=BSGatlas-transcript-418,BSGatlas-transcript-420,BSGatlas-transcript-421;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -18.1[kcal/mol]" basu168 BSGatlas transcript 430118 430501 . - . ID=BSGatlas-transcript-422;color=#B37924;Parent=BSGatlas-operon-186,BSGatlas-gene-466,BSGatlas-gene-465;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-308 basu168 BSGatlas exon 430118 430501 . - . ID=BSGatlas-transcript-422_exon;Parent=BSGatlas-transcript-422 basu168 BSGatlas UTR 430118 430184 . - . ID=BSGatlas-3'UTR-138;Parent=BSGatlas-transcript-422;comment="3'UTR" basu168 BSGatlas terminator 430118 430162 . - . ID=BSGatlas-terminator-216;Parent=BSGatlas-transcript-422;comment="Based on: Nicolas et al. downshift, Energy: -15.8[kcal/mol]" basu168 BSGatlas gene 430185 430274 . - . ID=BSGatlas-gene-465;color=#3474B3;Name=yczM;locus_tag=BSU03788,BSU_03788;Parent=BSGatlas-operon-186 basu168 BSGatlas CDS 430185 430274 . - 0 ID=BSGatlas-gene-465_transcribed;color=#3474B3;Name=yczM;Parent=BSGatlas-transcript-419,BSGatlas-transcript-422;comment="putative type I toxin";synonyms="yczM";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.18 Toxins, antitoxins and immunity against toxins/ based on similarity";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-465 basu168 BSGatlas UTR 430275 430355 . - . ID=BSGatlas-internal_UTR-154;Parent=BSGatlas-transcript-419,BSGatlas-transcript-422;comment="internal_UTR" basu168 BSGatlas transcript 430323 430501 . - . ID=BSGatlas-transcript-423;color=#B37924;Parent=BSGatlas-operon-186,BSGatlas-gene-466;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-308 basu168 BSGatlas exon 430323 430501 . - . ID=BSGatlas-transcript-423_exon;Parent=BSGatlas-transcript-423 basu168 BSGatlas terminator 430323 430367 . - . ID=BSGatlas-terminator-217;Parent=BSGatlas-transcript-423;comment="Based on: Nicolas et al. downshift, Energy: -16.5[kcal/mol]" basu168 BSGatlas UTR 430323 430355 . - . ID=BSGatlas-3'UTR-139;Parent=BSGatlas-transcript-423;comment="3'UTR" basu168 BSGatlas gene 430356 430469 . - . ID=BSGatlas-gene-466;color=#3474B3;Name=yczN;locus_tag=BSU03789,BSU_03789;Parent=BSGatlas-operon-186 basu168 BSGatlas CDS 430356 430469 . - 0 ID=BSGatlas-gene-466_transcribed;color=#3474B3;Name=yczN;Parent=BSGatlas-transcript-419,BSGatlas-transcript-422,BSGatlas-transcript-423;comment="putative spore and germination protein";synonyms="yczN";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.18 Toxins, antitoxins and immunity against toxins/ based on similarity";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-466 basu168 BSGatlas UTR 430470 430501 . - . ID=BSGatlas-5'UTR-249;Parent=BSGatlas-transcript-419,BSGatlas-transcript-422,BSGatlas-transcript-423;comment="5'UTR" basu168 BSGatlas TSS 430501 430501 . - . ID=BSGatlas-TSS-308;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 430575 432039 . - . ID=BSGatlas-operon-187;color=#B32496 basu168 BSGatlas transcript 430575 432039 . - . ID=BSGatlas-transcript-424;color=#B37924;Parent=BSGatlas-operon-187,BSGatlas-gene-467;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-309 basu168 BSGatlas exon 430575 432039 . - . ID=BSGatlas-transcript-424_exon;Parent=BSGatlas-transcript-424 basu168 BSGatlas UTR 430575 430622 . - . ID=BSGatlas-3'UTR-140;Parent=BSGatlas-transcript-424;comment="3'UTR" basu168 BSGatlas terminator 430575 430616 . - . ID=BSGatlas-terminator-218;Parent=BSGatlas-transcript-424;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.1[kcal/mol]" basu168 BSGatlas gene 430623 431987 . - . ID=BSGatlas-gene-467;color=#3474B3;Name=thrD;locus_tag=BSU03790,BSU_03790;Parent=BSGatlas-operon-187 basu168 BSGatlas CDS 430623 431987 . - 0 ID=BSGatlas-gene-467_transcribed;color=#3474B3;Name=thrD;Parent=BSGatlas-transcript-424;comment="aspartate kinase III";synonyms="thrD,yclM";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.1 Biosynthesis/ acquisition of amino acids,SW 2.3.1.6 Biosynthesis/ acquisition of lysine/ threonine";ec="2.7.2.4";go="GO:0000166 nucleotide binding,GO:0004072 aspartate kinase activity,GO:0005524 ATP binding,GO:0008152 metabolic process,GO:0008652 cellular amino acid biosynthetic process,GO:0009085 lysine biosynthetic process,GO:0009088 threonine biosynthetic process,GO:0009089 lysine biosynthetic process via diaminopimelate,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016597 amino acid binding,GO:0016740 transferase activity,GO:0019877 diaminopimelate biosynthetic process,GO:0042803 protein homodimerization activity";derives_from=BSGatlas-gene-467 basu168 BSGatlas UTR 431988 432039 . - . ID=BSGatlas-5'UTR-250;Parent=BSGatlas-transcript-424;comment="5'UTR" basu168 BSGatlas TSS 432039 432039 . - . ID=BSGatlas-TSS-309;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 432210 436038 . + . ID=BSGatlas-operon-188;color=#FF00CC basu168 BSGatlas transcript 432210 436038 . + . ID=BSGatlas-transcript-425;color=#FF9900;Parent=BSGatlas-operon-188,BSGatlas-gene-468,BSGatlas-gene-469,BSGatlas-gene-470,BSGatlas-gene-471;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-310 basu168 BSGatlas exon 432210 436038 . + . ID=BSGatlas-transcript-425_exon;Parent=BSGatlas-transcript-425 basu168 BSGatlas UTR 432210 432371 . + . ID=BSGatlas-5'UTR-251;Parent=BSGatlas-transcript-425;comment="5'UTR" basu168 BSGatlas TSS 432210 432210 . + . ID=BSGatlas-TSS-310;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 432271 436038 . + . ID=BSGatlas-transcript-426;color=#FF9900;Parent=BSGatlas-operon-188,BSGatlas-gene-468,BSGatlas-gene-469,BSGatlas-gene-470,BSGatlas-gene-471;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-311 basu168 BSGatlas exon 432271 436038 . + . ID=BSGatlas-transcript-426_exon;Parent=BSGatlas-transcript-426 basu168 BSGatlas UTR 432271 432371 . + . ID=BSGatlas-5'UTR-252;Parent=BSGatlas-transcript-426;comment="5'UTR" basu168 BSGatlas TSS 432271 432271 . + . ID=BSGatlas-TSS-311;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 432372 433322 . + . ID=BSGatlas-gene-468;color=#1E90FF;Name=pbtN;locus_tag=BSU03800,BSU_03800;Parent=BSGatlas-operon-188 basu168 BSGatlas CDS 432372 433322 . + 0 ID=BSGatlas-gene-468_transcribed;color=#1E90FF;Name=pbtN;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="petrobactin iron-siderophore ABC transporter(permease)";synonyms="fpbN,yclN";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0015344 siderophore uptake transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-468 basu168 BSGatlas gene 433315 434262 . + . ID=BSGatlas-gene-469;color=#1E90FF;Name=pbtO;locus_tag=BSU03810,BSU_03810;Parent=BSGatlas-operon-188 basu168 BSGatlas CDS 433315 434262 . + 0 ID=BSGatlas-gene-469_transcribed;color=#1E90FF;Name=pbtO;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="petrobactin iron-siderophore ABC transporter(permease)";synonyms="fpbO,yclO";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-469 basu168 BSGatlas gene 434256 435014 . + . ID=BSGatlas-gene-470;color=#1E90FF;Name=pbtP;locus_tag=BSU03820,BSU_03820;Parent=BSGatlas-operon-188 basu168 BSGatlas CDS 434256 435014 . + 0 ID=BSGatlas-gene-470_transcribed;color=#1E90FF;Name=pbtP;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="petrobactin iron-siderophore ABC transporter(ATP-binding protein)";synonyms="fpbP,yclP";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0008152 metabolic process,GO:0015344 siderophore uptake transmembrane transporter activity,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-470 basu168 BSGatlas UTR 435015 435035 . + . ID=BSGatlas-internal_UTR-155;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="internal_UTR" basu168 BSGatlas gene 435036 435989 . + . ID=BSGatlas-gene-471;color=#1E90FF;Name=pbtQ;locus_tag=BSU03830,BSU_03830;Parent=BSGatlas-operon-188 basu168 BSGatlas CDS 435036 435989 . + 0 ID=BSGatlas-gene-471_transcribed;color=#1E90FF;Name=pbtQ;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="petrobactin iron-siderophore ABC transporter(binding lipoprotein)";synonyms="fpbQ,fpiA,yclQ";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.1 Importers,SW 1.2.1.1.5 Uptake of iron/ siderophores,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores,SW 6 Groups of genes,SW 6.12 Secreted proteins,SW 6.2 Membrane proteins";go="GO:0005576 extracellular region,GO:0006810 transport,GO:0015344 siderophore uptake transmembrane transporter activity";derives_from=BSGatlas-gene-471 basu168 BSGatlas operon 435984 438427 . - . ID=BSGatlas-operon-189;color=#B32496 basu168 BSGatlas transcript 435984 438427 . - . ID=BSGatlas-transcript-427;color=#B37924;Parent=BSGatlas-operon-189,BSGatlas-gene-473,BSGatlas-gene-472;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-312 basu168 BSGatlas exon 435984 438427 . - . ID=BSGatlas-transcript-427_exon;Parent=BSGatlas-transcript-427 basu168 BSGatlas UTR 435984 436035 . - . ID=BSGatlas-3'UTR-141;Parent=BSGatlas-transcript-427;comment="3'UTR" basu168 BSGatlas terminator 435984 436028 . - . ID=BSGatlas-terminator-219;Parent=BSGatlas-transcript-427;comment="Based on: BsubCyc,DBTBS, Energy: -21.2[kcal/mol]" basu168 BSGatlas UTR 435990 436038 . + . ID=BSGatlas-3'UTR-142;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="3'UTR" basu168 BSGatlas terminator 435994 436038 . + . ID=BSGatlas-terminator-220;Parent=BSGatlas-transcript-425,BSGatlas-transcript-426;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -19.1[kcal/mol]" basu168 BSGatlas terminator 436035 436079 . - . ID=BSGatlas-terminator-221;Parent=BSGatlas-transcript-428;comment="Based on: Nicolas et al. downshift, Energy: -13.8[kcal/mol]" basu168 BSGatlas transcript 436036 438427 . - . ID=BSGatlas-transcript-428;color=#B37924;Parent=BSGatlas-operon-189,BSGatlas-gene-473,BSGatlas-gene-472;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-312 basu168 BSGatlas exon 436036 438427 . - . ID=BSGatlas-transcript-428_exon;Parent=BSGatlas-transcript-428 basu168 BSGatlas gene 436036 437454 . - . ID=BSGatlas-gene-472;color=#3474B3;Name=ycnB;locus_tag=BSU03840,BSU_03840;Parent=BSGatlas-operon-189 basu168 BSGatlas CDS 436036 437454 . - 0 ID=BSGatlas-gene-472_transcribed;color=#3474B3;Name=ycnB;Parent=BSGatlas-transcript-427,BSGatlas-transcript-428;comment="putative efflux transporter";synonyms="ycnB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.11 Other exporters,SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.3 Metabolism of signalling nucleotides,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-472 basu168 BSGatlas UTR 437455 437473 . - . ID=BSGatlas-internal_UTR-156;Parent=BSGatlas-transcript-427,BSGatlas-transcript-428;comment="internal_UTR" basu168 BSGatlas gene 437474 438352 . - . ID=BSGatlas-gene-473;color=#3474B3;Name=ycnC;locus_tag=BSU03850,BSU_03850;Parent=BSGatlas-operon-189 basu168 BSGatlas CDS 437474 438352 . - 0 ID=BSGatlas-gene-473_transcribed;color=#3474B3;Name=ycnC;Parent=BSGatlas-transcript-427,BSGatlas-transcript-428;comment="putative transcriptional regulator (TetR/AcrRfamily)";synonyms="ycnC";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-473 basu168 BSGatlas UTR 438353 438427 . - . ID=BSGatlas-5'UTR-253;Parent=BSGatlas-transcript-427,BSGatlas-transcript-428;comment="5'UTR" basu168 BSGatlas TSS 438427 438427 . - . ID=BSGatlas-TSS-312;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 438466 440355 . - . ID=BSGatlas-operon-190;color=#B32496 basu168 BSGatlas transcript 438466 440355 . - . ID=BSGatlas-transcript-430;color=#B37924;Parent=BSGatlas-operon-190,BSGatlas-gene-475,BSGatlas-gene-474;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-316 basu168 BSGatlas exon 438466 440355 . - . ID=BSGatlas-transcript-430_exon;Parent=BSGatlas-transcript-430 basu168 BSGatlas transcript 438466 439629 . - . ID=BSGatlas-transcript-429;color=#B37924;Parent=BSGatlas-operon-190,BSGatlas-gene-475,BSGatlas-gene-474;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-314 basu168 BSGatlas exon 438466 439629 . - . ID=BSGatlas-transcript-429_exon;Parent=BSGatlas-transcript-429 basu168 BSGatlas UTR 438466 438515 . - . ID=BSGatlas-3'UTR-143;Parent=BSGatlas-transcript-429,BSGatlas-transcript-430;comment="3'UTR" basu168 BSGatlas terminator 438466 438510 . - . ID=BSGatlas-terminator-222;Parent=BSGatlas-transcript-429,BSGatlas-transcript-430;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -22.9[kcal/mol]" basu168 BSGatlas gene 438516 439265 . - . ID=BSGatlas-gene-474;color=#3474B3;Name=nfrAB;locus_tag=BSU03860,BSU_03860;Parent=BSGatlas-operon-190 basu168 BSGatlas CDS 438516 439265 . - 0 ID=BSGatlas-gene-474_transcribed;color=#3474B3;Name=nfrAB;Parent=BSGatlas-transcript-429,BSGatlas-transcript-430;comment="NADPH-FMN oxidoreductase (nitroreductase)";synonyms="ycnD";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.3 Electron transport/ other";ec="1.5.1.39;1.6.99.-";go="GO:0009636 response to toxic substance,GO:0016491 oxidoreductase activity,GO:0019439 aromatic compound catabolic process,GO:0052873 FMN reductase (NADPH) activity,GO:0052874 FMN reductase (NADH) activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-474 basu168 BSGatlas UTR 439266 439281 . - . ID=BSGatlas-internal_UTR-157;Parent=BSGatlas-transcript-429,BSGatlas-transcript-430;comment="internal_UTR" basu168 BSGatlas gene 439282 439569 . - . ID=BSGatlas-gene-475;color=#3474B3;Name=ycnE;locus_tag=BSU03870,BSU_03870;Parent=BSGatlas-operon-190 basu168 BSGatlas CDS 439282 439569 . - 0 ID=BSGatlas-gene-475_transcribed;color=#3474B3;Name=ycnE;Parent=BSGatlas-transcript-429,BSGatlas-transcript-430;comment="putative AI-2 degrading enzyme";synonyms="ycnE";subtiwiki_category="SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue,SW 6.7 Proteins of unknown function";go="GO:0004497 monooxygenase activity,GO:0009636 response to toxic substance,GO:0016491 oxidoreductase activity,GO:0019439 aromatic compound catabolic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-475 basu168 BSGatlas UTR 439570 440355 . - . ID=BSGatlas-5'UTR-255;Parent=BSGatlas-transcript-430;comment="5'UTR" basu168 BSGatlas UTR 439570 439629 . - . ID=BSGatlas-5'UTR-254;Parent=BSGatlas-transcript-429;comment="5'UTR" basu168 BSGatlas operon 439575 440059 . + . ID=BSGatlas-operon-191;color=#FF00CC basu168 BSGatlas transcript 439575 440059 . + . ID=BSGatlas-transcript-431;color=#FF9900;Parent=BSGatlas-operon-191,BSGatlas-gene-476;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-313 basu168 BSGatlas exon 439575 440059 . + . ID=BSGatlas-transcript-431_exon;Parent=BSGatlas-transcript-431 basu168 BSGatlas UTR 439575 439708 . + . ID=BSGatlas-5'UTR-256;Parent=BSGatlas-transcript-431;comment="5'UTR" basu168 BSGatlas TSS 439575 439575 . + . ID=BSGatlas-TSS-313;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 439629 439629 . - . ID=BSGatlas-TSS-314;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 439686 440059 . + . ID=BSGatlas-transcript-432;color=#FF9900;Parent=BSGatlas-operon-191,BSGatlas-gene-476;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-315 basu168 BSGatlas exon 439686 440059 . + . ID=BSGatlas-transcript-432_exon;Parent=BSGatlas-transcript-432 basu168 BSGatlas UTR 439686 439708 . + . ID=BSGatlas-5'UTR-257;Parent=BSGatlas-transcript-432;comment="5'UTR" basu168 BSGatlas TSS 439686 439686 . + . ID=BSGatlas-TSS-315;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 439709 440023 . + . ID=BSGatlas-gene-476;color=#1E90FF;Name=yczG;locus_tag=BSU03880,BSU_03880;Parent=BSGatlas-operon-191 basu168 BSGatlas CDS 439709 440023 . + 0 ID=BSGatlas-gene-476_transcribed;color=#1E90FF;Name=yczG;Parent=BSGatlas-transcript-431,BSGatlas-transcript-432;comment="putative transcriptional regulator (ArsRfamily)";synonyms="yczG";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-476 basu168 BSGatlas operon 439812 441510 . - . ID=BSGatlas-operon-192;color=#B32496 basu168 BSGatlas transcript 439812 441510 . - . ID=BSGatlas-transcript-433;color=#B37924;Parent=BSGatlas-operon-192,BSGatlas-gene-477;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-317 basu168 BSGatlas exon 439812 441510 . - . ID=BSGatlas-transcript-433_exon;Parent=BSGatlas-transcript-433 basu168 BSGatlas UTR 439812 440024 . - . ID=BSGatlas-3'UTR-144;Parent=BSGatlas-transcript-433;comment="3'UTR" basu168 BSGatlas terminator 439812 439862 . - . ID=BSGatlas-terminator-223;Parent=BSGatlas-transcript-433;comment="Based on: BsubCyc,DBTBS, Energy: -11.9[kcal/mol]" basu168 BSGatlas terminator 440024 440059 . + . ID=BSGatlas-terminator-224;Parent=BSGatlas-transcript-431,BSGatlas-transcript-432;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -10[kcal/mol]" basu168 BSGatlas UTR 440024 440059 . + . ID=BSGatlas-3'UTR-145;Parent=BSGatlas-transcript-431,BSGatlas-transcript-432;comment="3'UTR" basu168 BSGatlas gene 440025 441464 . - . ID=BSGatlas-gene-477;color=#3474B3;Name=gabR;locus_tag=BSU03890,BSU_03890;Parent=BSGatlas-operon-192 basu168 BSGatlas CDS 440025 441464 . - 0 ID=BSGatlas-gene-477_transcribed;color=#3474B3;Name=gabR;Parent=BSGatlas-transcript-433;comment="transcriptional regulator (GntR/MocR family)with PLP binding site (GabR-GABA-PLP aldimine)";synonyms="gabR,ycnF";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.10 Utilization of gamma-amino butyric acid,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0000984 bacterial-type RNA polymerase regulatory region sequence-specific DNA binding,GO:0000986 bacterial-type proximal promoter sequence-specific DNA binding,GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0003824 catalytic activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008483 transaminase activity,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding,GO:0042803 protein homodimerization activity,GO:0044374 sequence-specific DNA binding, bending,GO:0045892 negative regulation of transcription, DNA-templated,GO:0045893 positive regulation of transcription, DNA-templated,GO:0051171 regulation of nitrogen compound metabolic process";derives_from=BSGatlas-gene-477 basu168 BSGatlas TSS 440355 440355 . - . ID=BSGatlas-TSS-316;color=#B32424;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 441465 441510 . - . ID=BSGatlas-5'UTR-258;Parent=BSGatlas-transcript-433;comment="5'UTR" basu168 BSGatlas TSS 441510 441510 . - . ID=BSGatlas-TSS-317;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12123465,17962296" basu168 BSGatlas operon 441543 444396 . + . ID=BSGatlas-operon-193;color=#FF00CC basu168 BSGatlas transcript 441543 444396 . + . ID=BSGatlas-transcript-434;color=#FF9900;Parent=BSGatlas-operon-193,BSGatlas-gene-478,BSGatlas-gene-479;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-318 basu168 BSGatlas exon 441543 444396 . + . ID=BSGatlas-transcript-434_exon;Parent=BSGatlas-transcript-434 basu168 BSGatlas UTR 441543 441570 . + . ID=BSGatlas-5'UTR-259;Parent=BSGatlas-transcript-434;comment="5'UTR" basu168 BSGatlas TSS 441543 441543 . + . ID=BSGatlas-TSS-318;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12123465,17962296" basu168 BSGatlas gene 441571 442881 . + . ID=BSGatlas-gene-478;color=#1E90FF;Name=gabT;locus_tag=BSU03900,BSU_03900;Parent=BSGatlas-operon-193 basu168 BSGatlas CDS 441571 442881 . + 0 ID=BSGatlas-gene-478_transcribed;color=#1E90FF;Name=gabT;Parent=BSGatlas-transcript-434;comment="4-aminobutyrate aminotransferase";synonyms="gabT,ycnG";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.10 Utilization of gamma-amino butyric acid";ec="2.6.1.19,EC-2.6.1.19";go="GO:0003824 catalytic activity,GO:0003867 4-aminobutyrate transaminase activity,GO:0008483 transaminase activity,GO:0009448 gamma-aminobutyric acid metabolic process,GO:0009450 gamma-aminobutyric acid catabolic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding,GO:0047298 (S)-3-amino-2-methylpropionate transaminase activity";derives_from=BSGatlas-gene-478 basu168 BSGatlas transcript 442793 444396 . + . ID=BSGatlas-transcript-435;color=#FF9900;Parent=BSGatlas-operon-193,BSGatlas-gene-479;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-319 basu168 BSGatlas exon 442793 444396 . + . ID=BSGatlas-transcript-435_exon;Parent=BSGatlas-transcript-435 basu168 BSGatlas UTR 442793 442949 . + . ID=BSGatlas-5'UTR-260;Parent=BSGatlas-transcript-435;comment="5'UTR" basu168 BSGatlas TSS 442793 442793 . + . ID=BSGatlas-TSS-319;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10482513" basu168 BSGatlas UTR 442882 442949 . + . ID=BSGatlas-internal_UTR-158;Parent=BSGatlas-transcript-434;comment="internal_UTR" basu168 BSGatlas transcript 442914 444396 . + . ID=BSGatlas-transcript-436;color=#FF9900;Parent=BSGatlas-operon-193,BSGatlas-gene-479;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-320 basu168 BSGatlas exon 442914 444396 . + . ID=BSGatlas-transcript-436_exon;Parent=BSGatlas-transcript-436 basu168 BSGatlas UTR 442914 442949 . + . ID=BSGatlas-5'UTR-261;Parent=BSGatlas-transcript-436;comment="5'UTR" basu168 BSGatlas TSS 442914 442914 . + . ID=BSGatlas-TSS-320;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 442950 444338 . + . ID=BSGatlas-gene-479;color=#1E90FF;Name=gabD;locus_tag=BSU03910,BSU_03910;Parent=BSGatlas-operon-193 basu168 BSGatlas CDS 442950 444338 . + 0 ID=BSGatlas-gene-479_transcribed;color=#1E90FF;Name=gabD;Parent=BSGatlas-transcript-434,BSGatlas-transcript-435,BSGatlas-transcript-436;comment="succinate-semialdehyde dehydrogenase";synonyms="gabD,ycnH";subtiwiki_category="SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.2 Utilization of amino acids,SW 2.3.2.10 Utilization of gamma-amino butyric acid,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";ec="1.2.1.24,EC-1.2.1.16";go="GO:0000303 response to superoxide,GO:0008152 metabolic process,GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity,GO:0009450 gamma-aminobutyric acid catabolic process,GO:0016491 oxidoreductase activity,GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-479 basu168 BSGatlas UTR 444339 444396 . + . ID=BSGatlas-3'UTR-146;Parent=BSGatlas-transcript-434,BSGatlas-transcript-435,BSGatlas-transcript-436;comment="3'UTR" basu168 BSGatlas terminator 444352 444396 . + . ID=BSGatlas-terminator-225;Parent=BSGatlas-transcript-434,BSGatlas-transcript-435,BSGatlas-transcript-436;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -24.2[kcal/mol]" basu168 BSGatlas operon 444430 446180 . + . ID=BSGatlas-operon-194;color=#FF00CC basu168 BSGatlas transcript 444430 446180 . + . ID=BSGatlas-transcript-438;color=#FF9900;Parent=BSGatlas-operon-194,BSGatlas-gene-480,BSGatlas-gene-481;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-321 basu168 BSGatlas exon 444430 446180 . + . ID=BSGatlas-transcript-438_exon;Parent=BSGatlas-transcript-438 basu168 BSGatlas transcript 444430 445559 . + . ID=BSGatlas-transcript-437;color=#FF9900;Parent=BSGatlas-operon-194,BSGatlas-gene-480;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-321 basu168 BSGatlas exon 444430 445559 . + . ID=BSGatlas-transcript-437_exon;Parent=BSGatlas-transcript-437 basu168 BSGatlas UTR 444430 444460 . + . ID=BSGatlas-5'UTR-262;Parent=BSGatlas-transcript-437,BSGatlas-transcript-438;comment="5'UTR" basu168 BSGatlas TSS 444430 444430 . + . ID=BSGatlas-TSS-321;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 17962296,3141376" basu168 BSGatlas gene 444461 445324 . + . ID=BSGatlas-gene-480;color=#1E90FF;Name=glcU;locus_tag=BSU03920,BSU_03920;Parent=BSGatlas-operon-194 basu168 BSGatlas CDS 444461 445324 . + 0 ID=BSGatlas-gene-480_transcribed;color=#1E90FF;Name=glcU;Parent=BSGatlas-transcript-437,BSGatlas-transcript-438;comment="glucose uptake protein";synonyms="glcU,ycxE";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.3 Carbohydrate transporter,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0015144 carbohydrate transmembrane transporter activity,GO:0015153 rhamnose transmembrane transporter activity,GO:0015762 rhamnose transmembrane transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0034219 carbohydrate transmembrane transport,GO:0035428 NA";derives_from=BSGatlas-gene-480 basu168 BSGatlas UTR 445325 445559 . + . ID=BSGatlas-3'UTR-147;Parent=BSGatlas-transcript-437;comment="3'UTR" basu168 BSGatlas UTR 445325 445343 . + . ID=BSGatlas-internal_UTR-159;Parent=BSGatlas-transcript-438;comment="internal_UTR" basu168 BSGatlas transcript 445344 446180 . + . ID=BSGatlas-transcript-439;color=#FF9900;Parent=BSGatlas-operon-194,BSGatlas-gene-481;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-322 basu168 BSGatlas exon 445344 446180 . + . ID=BSGatlas-transcript-439_exon;Parent=BSGatlas-transcript-439 basu168 BSGatlas gene 445344 446129 . + . ID=BSGatlas-gene-481;color=#1E90FF;Name=gdh;locus_tag=BSU03930,BSU_03930;Parent=BSGatlas-operon-194 basu168 BSGatlas CDS 445344 446129 . + 0 ID=BSGatlas-gene-481_transcribed;color=#1E90FF;Name=gdh;Parent=BSGatlas-transcript-438,BSGatlas-transcript-439;comment="forespore glucose 1-dehydrogenase";synonyms="gdh";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.4 Germination,SW 4.2.4.2 Additional germination proteins";ec="1.1.1.47";go="GO:0008152 metabolic process,GO:0016491 oxidoreductase activity,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0042601 endospore-forming forespore,GO:0047936 glucose 1-dehydrogenase [NAD(P)] activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-481 basu168 BSGatlas TSS 445449 445449 . + . ID=BSGatlas-TSS-322;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 445515 445559 . + . ID=BSGatlas-terminator-226;Parent=BSGatlas-transcript-437;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas UTR 446130 446180 . + . ID=BSGatlas-3'UTR-148;Parent=BSGatlas-transcript-438,BSGatlas-transcript-439;comment="3'UTR" basu168 BSGatlas terminator 446134 446180 . + . ID=BSGatlas-terminator-227;Parent=BSGatlas-transcript-438,BSGatlas-transcript-439;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.3[kcal/mol]" basu168 BSGatlas terminator 446163 446207 . - . ID=BSGatlas-terminator-228;Parent=BSGatlas-transcript-440;comment="Based on: Nicolas et al. downshift, Energy: -16[kcal/mol]" basu168 BSGatlas operon 446174 449070 . - . ID=BSGatlas-operon-195;color=#B32496 basu168 BSGatlas transcript 446174 449070 . - . ID=BSGatlas-transcript-440;color=#B37924;Parent=BSGatlas-operon-195,BSGatlas-gene-484,BSGatlas-gene-483,BSGatlas-gene-482;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-323 basu168 BSGatlas exon 446174 449070 . - . ID=BSGatlas-transcript-440_exon;Parent=BSGatlas-transcript-440 basu168 BSGatlas gene 446174 446788 . - . ID=BSGatlas-gene-482;color=#3474B3;Name=cutI;locus_tag=BSU03940,BSU_03940;Parent=BSGatlas-operon-195 basu168 BSGatlas CDS 446174 446788 . - 0 ID=BSGatlas-gene-482_transcribed;color=#3474B3;Name=cutI;Parent=BSGatlas-transcript-440;comment="putative membrane protein involved in copperintake";synonyms="ycnI";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-482 basu168 BSGatlas gene 446801 448426 . - . ID=BSGatlas-gene-483;color=#3474B3;Name=cutJ;locus_tag=BSU03950,BSU_03950;Parent=BSGatlas-operon-195 basu168 BSGatlas CDS 446801 448426 . - 0 ID=BSGatlas-gene-483_transcribed;color=#3474B3;Name=cutJ;Parent=BSGatlas-transcript-440;comment="copper import permease subunit";synonyms="ycnJ";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.5 Metal ion transporter,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.1 Copper,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005507 copper ion binding,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0006825 copper ion transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0042597 periplasmic space,GO:0046688 response to copper ion,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-483 basu168 BSGatlas UTR 448427 448460 . - . ID=BSGatlas-internal_UTR-160;Parent=BSGatlas-transcript-440;comment="internal_UTR" basu168 BSGatlas transcript 448461 449070 . - . ID=BSGatlas-transcript-441;color=#B37924;Parent=BSGatlas-operon-195,BSGatlas-gene-484;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-323 basu168 BSGatlas exon 448461 449070 . - . ID=BSGatlas-transcript-441_exon;Parent=BSGatlas-transcript-441 basu168 BSGatlas gene 448461 449033 . - . ID=BSGatlas-gene-484;color=#3474B3;Name=cutR;locus_tag=BSU03960,BSU_03960;Parent=BSGatlas-operon-195 basu168 BSGatlas CDS 448461 449033 . - 0 ID=BSGatlas-gene-484_transcribed;color=#3474B3;Name=cutR;Parent=BSGatlas-transcript-440,BSGatlas-transcript-441;comment="transcriptional regulator of copper intake(CutR-Cu(+))";synonyms="ycnK";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.1 Copper,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-484 basu168 BSGatlas UTR 449034 449070 . - . ID=BSGatlas-5'UTR-263;Parent=BSGatlas-transcript-440,BSGatlas-transcript-441;comment="5'UTR" basu168 BSGatlas TSS 449070 449070 . - . ID=BSGatlas-TSS-323;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 449167 449577 . + . ID=BSGatlas-operon-196;color=#FF00CC basu168 BSGatlas transcript 449167 449577 . + . ID=BSGatlas-transcript-442;color=#FF9900;Parent=BSGatlas-operon-196,BSGatlas-gene-485;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-324 basu168 BSGatlas exon 449167 449577 . + . ID=BSGatlas-transcript-442_exon;Parent=BSGatlas-transcript-442 basu168 BSGatlas UTR 449167 449197 . + . ID=BSGatlas-5'UTR-264;Parent=BSGatlas-transcript-442;comment="5'UTR" basu168 BSGatlas TSS 449167 449167 . + . ID=BSGatlas-TSS-324;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 449198 449551 . + . ID=BSGatlas-gene-485;color=#1E90FF;Name=ycnL;locus_tag=BSU03970,BSU_03970;Parent=BSGatlas-operon-196 basu168 BSGatlas CDS 449198 449551 . + 0 ID=BSGatlas-gene-485_transcribed;color=#1E90FF;Name=ycnL;Parent=BSGatlas-transcript-442;comment="putative reductase or disulfide isomerase";synonyms="ycnL";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-485 basu168 BSGatlas terminator 449538 449577 . + . ID=BSGatlas-terminator-229;Parent=BSGatlas-transcript-442;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.2[kcal/mol]" basu168 BSGatlas UTR 449552 449577 . + . ID=BSGatlas-3'UTR-149;Parent=BSGatlas-transcript-442;comment="3'UTR" basu168 BSGatlas operon 449641 452783 . + . ID=BSGatlas-operon-197;color=#FF00CC basu168 BSGatlas transcript 449641 452783 . + . ID=BSGatlas-transcript-443;color=#FF9900;Parent=BSGatlas-operon-197,BSGatlas-gene-486,BSGatlas-gene-487,BSGatlas-gene-488;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-325 basu168 BSGatlas exon 449641 452783 . + . ID=BSGatlas-transcript-443_exon;Parent=BSGatlas-transcript-443 basu168 BSGatlas UTR 449641 449723 . + . ID=BSGatlas-5'UTR-265;Parent=BSGatlas-transcript-443;comment="5'UTR" basu168 BSGatlas TSS 449641 449641 . + . ID=BSGatlas-TSS-325;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 449724 451160 . + . ID=BSGatlas-gene-486;color=#1E90FF;Name=mtlA;locus_tag=BSU03981,BSU_03981;Parent=BSGatlas-operon-197 basu168 BSGatlas CDS 449724 451160 . + 0 ID=BSGatlas-gene-486_transcribed;color=#1E90FF;Name=mtlA;Parent=BSGatlas-transcript-443;comment="phosphotransferase system (PTS)mannitol-specific enzyme IICB component";synonyms="mtlA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.10 Utilization of mannitol,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.4 Control of PRD-type regulators,SW 3.4.3 Trigger enzyme,SW 3.4.3.1 Trigger enzymes of the PTS that control the activity of PRD-containing transcription factors,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.3 Phosphorylation on a Cys residue,SW 6.4.5 Phosphorylation on a Ser residue";ec="2.7.1.197,2.7.1.69";go="GO:0005351 carbohydrate:proton symporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015992 NA,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-486 basu168 BSGatlas UTR 451161 451184 . + . ID=BSGatlas-internal_UTR-161;Parent=BSGatlas-transcript-443;comment="internal_UTR" basu168 BSGatlas gene 451185 451616 . + . ID=BSGatlas-gene-487;color=#1E90FF;Name=mtlF;locus_tag=BSU03982,BSU_03982;Parent=BSGatlas-operon-197 basu168 BSGatlas CDS 451185 451616 . + 0 ID=BSGatlas-gene-487_transcribed;color=#1E90FF;Name=mtlF;Parent=BSGatlas-transcript-443;comment="phosphotransferase system (PTS)mannitol-specific enzyme IIA component";synonyms="mtlF";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.10 Utilization of mannitol,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";ec="2.7.1.197";go="GO:0005215 transporter activity,GO:0005737 cytoplasm,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity";derives_from=BSGatlas-gene-487 basu168 BSGatlas gene 451618 452739 . + . ID=BSGatlas-gene-488;color=#1E90FF;Name=mtlD;locus_tag=BSU03990,BSU_03990;Parent=BSGatlas-operon-197 basu168 BSGatlas CDS 451618 452739 . + 0 ID=BSGatlas-gene-488_transcribed;color=#1E90FF;Name=mtlD;Parent=BSGatlas-transcript-443;comment="mannitol-1-phosphate 5-dehydrogenase";synonyms="mtlB,mtlD";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.10 Utilization of mannitol";ec="1.1.1.17,EC-1.1.1.17";go="GO:0003824 catalytic activity,GO:0008926 mannitol-1-phosphate 5-dehydrogenase activity,GO:0016491 oxidoreductase activity,GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,GO:0019594 mannitol metabolic process,GO:0050662 coenzyme binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-488 basu168 BSGatlas UTR 452740 452783 . + . ID=BSGatlas-3'UTR-150;Parent=BSGatlas-transcript-443;comment="3'UTR" basu168 BSGatlas terminator 452742 452783 . + . ID=BSGatlas-terminator-230;Parent=BSGatlas-transcript-443;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.7[kcal/mol]" basu168 BSGatlas operon 452789 453930 . + . ID=BSGatlas-operon-198;color=#FF00CC basu168 BSGatlas transcript 452789 453930 . + . ID=BSGatlas-transcript-444;color=#FF9900;Parent=BSGatlas-operon-198,BSGatlas-gene-489;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-326 basu168 BSGatlas exon 452789 453930 . + . ID=BSGatlas-transcript-444_exon;Parent=BSGatlas-transcript-444 basu168 BSGatlas UTR 452789 452829 . + . ID=BSGatlas-5'UTR-266;Parent=BSGatlas-transcript-444;comment="5'UTR" basu168 BSGatlas TSS 452789 452789 . + . ID=BSGatlas-TSS-326;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 452830 453930 . + . ID=BSGatlas-transcript-445;color=#FF9900;Parent=BSGatlas-operon-198,BSGatlas-gene-489;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-327 basu168 BSGatlas exon 452830 453930 . + . ID=BSGatlas-transcript-445_exon;Parent=BSGatlas-transcript-445 basu168 BSGatlas gene 452830 453894 . + . ID=BSGatlas-gene-489;color=#1E90FF;Name=ycsA;locus_tag=BSU04000,BSU_04000;Parent=BSGatlas-operon-198 basu168 BSGatlas CDS 452830 453894 . + 0 ID=BSGatlas-gene-489_transcribed;color=#1E90FF;Name=ycsA;Parent=BSGatlas-transcript-444,BSGatlas-transcript-445;comment="putative tartrate dehydrogenase";synonyms="ycsA";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.1.1.93,1.1.1.93;1.1.1.83;4.1.1.73,EC-1.1.1.93";go="GO:0000287 magnesium ion binding,GO:0009027 tartrate dehydrogenase activity,GO:0016491 oxidoreductase activity,GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,GO:0016829 lyase activity,GO:0046553 D-malate dehydrogenase (decarboxylating) activity,GO:0050319 tartrate decarboxylase activity,GO:0051287 NAD binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-489 basu168 BSGatlas TSS 453096 453096 . + . ID=BSGatlas-TSS-327;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 453895 453930 . + . ID=BSGatlas-3'UTR-151;Parent=BSGatlas-transcript-444,BSGatlas-transcript-445;comment="3'UTR" basu168 BSGatlas terminator 453900 453930 . + . ID=BSGatlas-terminator-231;Parent=BSGatlas-transcript-444,BSGatlas-transcript-445;comment="Based on: BsubCyc,Nicolas et al. downshift, Energy: -26.7[kcal/mol]" basu168 BSGatlas operon 453994 454712 . + . ID=BSGatlas-operon-199;color=#FF00CC basu168 BSGatlas transcript 453994 454712 . + . ID=BSGatlas-transcript-446;color=#FF9900;Parent=BSGatlas-operon-199,BSGatlas-gene-490;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-328 basu168 BSGatlas exon 453994 454712 . + . ID=BSGatlas-transcript-446_exon;Parent=BSGatlas-transcript-446 basu168 BSGatlas UTR 453994 454028 . + . ID=BSGatlas-5'UTR-267;Parent=BSGatlas-transcript-446;comment="5'UTR" basu168 BSGatlas TSS 453994 453994 . + . ID=BSGatlas-TSS-328;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 454029 454592 . + . ID=BSGatlas-gene-490;color=#1E90FF;Name=sipU;locus_tag=BSU04010,BSU_04010;Parent=BSGatlas-operon-199 basu168 BSGatlas CDS 454029 454592 . + 0 ID=BSGatlas-gene-490_transcribed;color=#1E90FF;Name=sipU;Parent=BSGatlas-transcript-446;comment="type I signal peptidase";synonyms="sipU,ycsB";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.5 Protein secretion,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.4.21.89,EC-3.4.21.89";go="GO:0005886 plasma membrane,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008236 serine-type peptidase activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-490 basu168 BSGatlas UTR 454593 454712 . + . ID=BSGatlas-3'UTR-152;Parent=BSGatlas-transcript-446;comment="3'UTR" basu168 BSGatlas operon 454652 455301 . - . ID=BSGatlas-operon-200;color=#B32496 basu168 BSGatlas transcript 454652 455301 . - . ID=BSGatlas-transcript-447;color=#B37924;Parent=BSGatlas-operon-200,BSGatlas-gene-491;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-329 basu168 BSGatlas exon 454652 455301 . - . ID=BSGatlas-transcript-447_exon;Parent=BSGatlas-transcript-447 basu168 BSGatlas gene 454652 455260 . - . ID=BSGatlas-gene-491;color=#3474B3;Name=yczH;locus_tag=BSU04020,BSU_04020;Parent=BSGatlas-operon-200 basu168 BSGatlas CDS 454652 455260 . - 0 ID=BSGatlas-gene-491_transcribed;color=#3474B3;Name=yczH;Parent=BSGatlas-transcript-447;comment="putative hydrolase";synonyms="yczH";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-491 basu168 BSGatlas terminator 454667 454712 . + . ID=BSGatlas-terminator-232;Parent=BSGatlas-transcript-446;comment="Based on: BsubCyc,DBTBS, Energy: -14.2[kcal/mol]" basu168 BSGatlas UTR 455261 455301 . - . ID=BSGatlas-5'UTR-268;Parent=BSGatlas-transcript-447;comment="5'UTR" basu168 BSGatlas TSS 455301 455301 . - . ID=BSGatlas-TSS-329;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 455319 455788 . + . ID=BSGatlas-operon-201;color=#FF00CC basu168 BSGatlas transcript 455319 455788 . + . ID=BSGatlas-transcript-449;color=#FF9900;Parent=BSGatlas-operon-201,BSGatlas-gene-492;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-330 basu168 BSGatlas exon 455319 455788 . + . ID=BSGatlas-transcript-449_exon;Parent=BSGatlas-transcript-449 basu168 BSGatlas transcript 455319 455738 . + . ID=BSGatlas-transcript-448;color=#FF9900;Parent=BSGatlas-operon-201,BSGatlas-gene-492;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-330 basu168 BSGatlas exon 455319 455738 . + . ID=BSGatlas-transcript-448_exon;Parent=BSGatlas-transcript-448 basu168 BSGatlas UTR 455319 455345 . + . ID=BSGatlas-5'UTR-269;Parent=BSGatlas-transcript-448,BSGatlas-transcript-449;comment="5'UTR" basu168 BSGatlas TSS 455319 455319 . + . ID=BSGatlas-TSS-330;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 455346 455738 . + . ID=BSGatlas-gene-492;color=#1E90FF;Name=ycsD;locus_tag=BSU04030,BSU_04030;Parent=BSGatlas-operon-201 basu168 BSGatlas CDS 455346 455738 . + 0 ID=BSGatlas-gene-492_transcribed;color=#1E90FF;Name=ycsD;Parent=BSGatlas-transcript-448,BSGatlas-transcript-449;comment="putative hydroxyacyl-(acyl carrier protein)dehydratase";synonyms="ycsD";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.1 Biosynthesis of fatty acids";ec="4.2.1.-,EC-2.3.1.86;EC-2.3.1.85;EC-4.2.1.59";derives_from=BSGatlas-gene-492 basu168 BSGatlas terminator 455693 455737 . + . ID=BSGatlas-terminator-233;Parent=BSGatlas-transcript-448;comment="Based on: Nicolas et al. downshift, Energy: -13.6[kcal/mol]" basu168 BSGatlas terminator 455738 455788 . + . ID=BSGatlas-terminator-234;Parent=BSGatlas-transcript-449;comment="Based on: BsubCyc,DBTBS, Energy: -19.9[kcal/mol]" basu168 BSGatlas UTR 455739 455788 . + . ID=BSGatlas-3'UTR-153;Parent=BSGatlas-transcript-449;comment="3'UTR" basu168 BSGatlas terminator 455769 455813 . - . ID=BSGatlas-terminator-235;Parent=BSGatlas-transcript-450;comment="Based on: Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas operon 455771 455967 . - . ID=BSGatlas-operon-202;color=#B32496 basu168 BSGatlas transcript 455771 455967 . - . ID=BSGatlas-transcript-450;color=#B37924;Parent=BSGatlas-operon-202,BSGatlas-gene-493;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-331 basu168 BSGatlas exon 455771 455967 . - . ID=BSGatlas-transcript-450_exon;Parent=BSGatlas-transcript-450 basu168 BSGatlas gene 455771 455935 . - . ID=BSGatlas-gene-493;color=#3474B3;Name=yczO;locus_tag=BSU04039,BSU_04039;Parent=BSGatlas-operon-202 basu168 BSGatlas CDS 455771 455935 . - 0 ID=BSGatlas-gene-493_transcribed;color=#3474B3;Name=yczO;Parent=BSGatlas-transcript-450;comment="conserved protein of unknown function";synonyms="yczO";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-493 basu168 BSGatlas UTR 455936 455967 . - . ID=BSGatlas-5'UTR-270;Parent=BSGatlas-transcript-450;comment="5'UTR" basu168 BSGatlas TSS 455967 455967 . - . ID=BSGatlas-TSS-331;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 456021 456845 . + . ID=BSGatlas-operon-203;color=#FF00CC basu168 BSGatlas transcript 456021 456845 . + . ID=BSGatlas-transcript-452;color=#FF9900;Parent=BSGatlas-operon-203,BSGatlas-gene-494;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-332 basu168 BSGatlas exon 456021 456845 . + . ID=BSGatlas-transcript-452_exon;Parent=BSGatlas-transcript-452 basu168 BSGatlas transcript 456021 456817 . + . ID=BSGatlas-transcript-451;color=#FF9900;Parent=BSGatlas-operon-203,BSGatlas-gene-494;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-332 basu168 BSGatlas exon 456021 456817 . + . ID=BSGatlas-transcript-451_exon;Parent=BSGatlas-transcript-451 basu168 BSGatlas UTR 456021 456067 . + . ID=BSGatlas-5'UTR-271;Parent=BSGatlas-transcript-451,BSGatlas-transcript-452;comment="5'UTR" basu168 BSGatlas TSS 456021 456021 . + . ID=BSGatlas-TSS-332;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 456068 456817 . + . ID=BSGatlas-gene-494;color=#1E90FF;Name=ribZ;locus_tag=BSU04040,BSU_04040;Parent=BSGatlas-operon-203 basu168 BSGatlas CDS 456068 456817 . + 0 ID=BSGatlas-gene-494_transcribed;color=#1E90FF;Name=ribZ;Parent=BSGatlas-transcript-451,BSGatlas-transcript-452;comment="5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase / 5'nucleotidase";synonyms="ycsE";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.2 Biosynthesis of cofactors,SW 2.6.2.2 Biosynthesis/ acquisition of riboflavin/ FAD";ec="3.1.3.-,EC-3.1.3.104";go="GO:0000287 magnesium ion binding,GO:0003824 catalytic activity,GO:0006812 cation transport,GO:0008152 metabolic process,GO:0009231 riboflavin biosynthetic process,GO:0016021 integral component of membrane,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity,GO:0016791 phosphatase activity,GO:0019829 cation-transporting ATPase activity,GO:0034220 ion transmembrane transport,GO:0043726 5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity";derives_from=BSGatlas-gene-494 basu168 BSGatlas terminator 456772 456816 . + . ID=BSGatlas-terminator-236;Parent=BSGatlas-transcript-451;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas UTR 456818 456845 . + . ID=BSGatlas-3'UTR-154;Parent=BSGatlas-transcript-452;comment="3'UTR" basu168 BSGatlas terminator 456823 456845 . + . ID=BSGatlas-terminator-237;Parent=BSGatlas-transcript-452;comment="Based on: BsubCyc, Energy: -14.9[kcal/mol]" basu168 BSGatlas terminator 456848 456892 . - . ID=BSGatlas-terminator-238;comment="Based on: Nicolas et al. downshift, Energy: -11.7[kcal/mol]" basu168 BSGatlas operon 456926 463111 . + . ID=BSGatlas-operon-204;color=#FF00CC basu168 BSGatlas transcript 456926 463111 . + . ID=BSGatlas-transcript-454;color=#FF9900;Parent=BSGatlas-operon-204,BSGatlas-gene-495,BSGatlas-gene-496,BSGatlas-gene-497,BSGatlas-gene-498,BSGatlas-gene-499,BSGatlas-gene-500,BSGatlas-gene-501;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-333 basu168 BSGatlas exon 456926 463111 . + . ID=BSGatlas-transcript-454_exon;Parent=BSGatlas-transcript-454 basu168 BSGatlas transcript 456926 461107 . + . ID=BSGatlas-transcript-453;color=#FF9900;Parent=BSGatlas-operon-204,BSGatlas-gene-495,BSGatlas-gene-496,BSGatlas-gene-497,BSGatlas-gene-498;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-333 basu168 BSGatlas exon 456926 461107 . + . ID=BSGatlas-transcript-453_exon;Parent=BSGatlas-transcript-453 basu168 BSGatlas UTR 456926 457022 . + . ID=BSGatlas-5'UTR-272;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="5'UTR" basu168 BSGatlas TSS 456926 456926 . + . ID=BSGatlas-TSS-333;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 457023 457796 . + . ID=BSGatlas-gene-495;color=#1E90FF;Name=pxpA;locus_tag=BSU04050,BSU_04050;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 457023 457796 . + 0 ID=BSGatlas-gene-495_transcribed;color=#1E90FF;Name=pxpA;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="oxoprolinase subunit A";synonyms="pxpA,ycsF";subtiwiki_category="SW 2 Metabolism,SW 2.7 Detoxification reactions";ec="3.5.2.9";go="GO:0003824 catalytic activity,GO:0005975 carbohydrate metabolic process";derives_from=BSGatlas-gene-495 basu168 BSGatlas gene 457811 459025 . + . ID=BSGatlas-gene-496;color=#1E90FF;Name=pxpG;locus_tag=BSU04060,BSU_04060;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 457811 459025 . + 0 ID=BSGatlas-gene-496_transcribed;color=#1E90FF;Name=pxpG;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="5-oxoproline transporter";synonyms="ycsG,ycsH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 2 Metabolism,SW 2.3 Amino acid/ nitrogen metabolism,SW 2.3.4 Putative amino acid transporter,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-496 basu168 BSGatlas UTR 459026 459048 . + . ID=BSGatlas-internal_UTR-162;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="internal_UTR" basu168 BSGatlas gene 459049 459822 . + . ID=BSGatlas-gene-497;color=#1E90FF;Name=pxpI;locus_tag=BSU04070,BSU_04070;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 459049 459822 . + 0 ID=BSGatlas-gene-497_transcribed;color=#1E90FF;Name=pxpI;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="putative D-5-oxoproline epimerase";synonyms="ycsI";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-497 basu168 BSGatlas UTR 459823 459866 . + . ID=BSGatlas-internal_UTR-163;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="internal_UTR" basu168 BSGatlas gene 459867 460589 . + . ID=BSGatlas-gene-498;color=#1E90FF;Name=pxpB;locus_tag=BSU04080,BSU_04080;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 459867 460589 . + 0 ID=BSGatlas-gene-498_transcribed;color=#1E90FF;Name=pxpB;Parent=BSGatlas-transcript-453,BSGatlas-transcript-454;comment="L-5-oxoprolinase (ATP-dependent) subunit B";synonyms="kipI,pxpB,ycsJ";subtiwiki_category="SW 2 Metabolism,SW 2.7 Detoxification reactions,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.7 phosphorelay,SW 3.4.7.2 Proteins controlling the activity of the kinases,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay,SW 4.2.2.2 Proteins controlling the activity of the kinases";ec="3.5.2.9";go="GO:0000166 nucleotide binding,GO:0000413 protein peptidyl-prolyl isomerization,GO:0003755 peptidyl-prolyl cis-trans isomerase activity,GO:0004860 protein kinase inhibitor activity,GO:0005524 ATP binding,GO:0006457 protein folding,GO:0006469 negative regulation of protein kinase activity,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-498 basu168 BSGatlas UTR 460590 461107 . + . ID=BSGatlas-3'UTR-155;Parent=BSGatlas-transcript-453;comment="3'UTR" basu168 BSGatlas gene 460592 461599 . + . ID=BSGatlas-gene-499;color=#1E90FF;Name=pxpC;locus_tag=BSU04090,BSU_04090;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 460592 461599 . + 0 ID=BSGatlas-gene-499_transcribed;color=#1E90FF;Name=pxpC;Parent=BSGatlas-transcript-454;comment="L-5-oxoprolinase (ATP-dependent) subunit C";synonyms="kipA,pxpC";subtiwiki_category="SW 2 Metabolism,SW 2.7 Detoxification reactions,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.7 phosphorelay,SW 3.4.7.2 Proteins controlling the activity of the kinases,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay,SW 4.2.2.2 Proteins controlling the activity of the kinases";ec="3.5.2.9";go="GO:0000413 protein peptidyl-prolyl isomerization,GO:0003755 peptidyl-prolyl cis-trans isomerase activity,GO:0006457 protein folding,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-499 basu168 BSGatlas terminator 461063 461107 . + . ID=BSGatlas-terminator-239;Parent=BSGatlas-transcript-453;comment="Based on: Nicolas et al. downshift, Energy: -12.4[kcal/mol]" basu168 BSGatlas transcript 461239 463111 . + . ID=BSGatlas-transcript-455;color=#FF9900;Parent=BSGatlas-operon-204,BSGatlas-gene-500,BSGatlas-gene-501;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-334 basu168 BSGatlas exon 461239 463111 . + . ID=BSGatlas-transcript-455_exon;Parent=BSGatlas-transcript-455 basu168 BSGatlas UTR 461239 461614 . + . ID=BSGatlas-5'UTR-273;Parent=BSGatlas-transcript-455;comment="5'UTR" basu168 BSGatlas TSS 461239 461239 . + . ID=BSGatlas-TSS-334;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 461615 462367 . + . ID=BSGatlas-gene-500;color=#1E90FF;Name=pxpR;locus_tag=BSU04100,BSU_04100;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 461615 462367 . + 0 ID=BSGatlas-gene-500_transcribed;color=#1E90FF;Name=pxpR;Parent=BSGatlas-transcript-454,BSGatlas-transcript-455;comment="transcriptional regulator of the pxp operon(IclR family)";synonyms="kipR,ycsO";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.7 phosphorelay,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-500 basu168 BSGatlas UTR 462368 462430 . + . ID=BSGatlas-internal_UTR-164;Parent=BSGatlas-transcript-454,BSGatlas-transcript-455;comment="internal_UTR" basu168 BSGatlas transcript 462398 463111 . + . ID=BSGatlas-transcript-456;color=#FF9900;Parent=BSGatlas-operon-204,BSGatlas-gene-501;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-335 basu168 BSGatlas exon 462398 463111 . + . ID=BSGatlas-transcript-456_exon;Parent=BSGatlas-transcript-456 basu168 BSGatlas UTR 462398 462430 . + . ID=BSGatlas-5'UTR-274;Parent=BSGatlas-transcript-456;comment="5'UTR" basu168 BSGatlas TSS 462398 462398 . + . ID=BSGatlas-TSS-335;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 462431 463072 . + . ID=BSGatlas-gene-501;color=#1E90FF;Name=lipC;locus_tag=BSU04110,BSU_04110;Parent=BSGatlas-operon-204 basu168 BSGatlas CDS 462431 463072 . + 0 ID=BSGatlas-gene-501_transcribed;color=#1E90FF;Name=lipC;Parent=BSGatlas-transcript-454,BSGatlas-transcript-455,BSGatlas-transcript-456;comment="spore coat phospholipase B";synonyms="lipC,ycsK";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.1 Utilization of phospholipids,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.5 Class V,SW 4.2.4 Germination,SW 4.2.4.2 Additional germination proteins";ec="3.1.1.-";go="GO:0006629 lipid metabolic process,GO:0016787 hydrolase activity,GO:0016788 hydrolase activity, acting on ester bonds,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0031160 spore wall";derives_from=BSGatlas-gene-501 basu168 BSGatlas terminator 463072 463111 . + . ID=BSGatlas-terminator-240;Parent=BSGatlas-transcript-454,BSGatlas-transcript-455,BSGatlas-transcript-456;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.1[kcal/mol]" basu168 BSGatlas UTR 463073 463111 . + . ID=BSGatlas-3'UTR-156;Parent=BSGatlas-transcript-454,BSGatlas-transcript-455,BSGatlas-transcript-456;comment="3'UTR" basu168 BSGatlas operon 463093 463820 . - . ID=BSGatlas-operon-205;color=#B32496 basu168 BSGatlas transcript 463093 463820 . - . ID=BSGatlas-transcript-457;color=#B37924;Parent=BSGatlas-operon-205,BSGatlas-gene-503;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-337 basu168 BSGatlas exon 463093 463820 . - . ID=BSGatlas-transcript-457_exon;Parent=BSGatlas-transcript-457 basu168 BSGatlas UTR 463093 463495 . - . ID=BSGatlas-3'UTR-157;Parent=BSGatlas-transcript-457;comment="3'UTR" basu168 BSGatlas terminator 463093 463137 . - . ID=BSGatlas-terminator-241;Parent=BSGatlas-transcript-457;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -11.8[kcal/mol]" basu168 BSGatlas operon 463169 463490 . + . ID=BSGatlas-operon-206;color=#FF00CC basu168 BSGatlas transcript 463169 463490 . + . ID=BSGatlas-transcript-458;color=#FF9900;Parent=BSGatlas-operon-206,BSGatlas-gene-502;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-336 basu168 BSGatlas exon 463169 463490 . + . ID=BSGatlas-transcript-458_exon;Parent=BSGatlas-transcript-458 basu168 BSGatlas UTR 463169 463244 . + . ID=BSGatlas-5'UTR-275;Parent=BSGatlas-transcript-458;comment="5'UTR" basu168 BSGatlas TSS 463169 463169 . + . ID=BSGatlas-TSS-336;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 463245 463490 . + . ID=BSGatlas-gene-502;color=#1E90FF;Name=yczI;locus_tag=BSU04120,BSU_04120;Parent=BSGatlas-operon-206 basu168 BSGatlas CDS 463245 463490 . + 0 ID=BSGatlas-gene-502_transcribed;color=#1E90FF;Name=yczI;Parent=BSGatlas-transcript-458;comment="conserved protein of unknown function";synonyms="yczI";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-502 basu168 BSGatlas transcript 463391 463820 . - . ID=BSGatlas-transcript-459;color=#B37924;Parent=BSGatlas-operon-205,BSGatlas-gene-503;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-337 basu168 BSGatlas exon 463391 463820 . - . ID=BSGatlas-transcript-459_exon;Parent=BSGatlas-transcript-459 basu168 BSGatlas UTR 463391 463495 . - . ID=BSGatlas-3'UTR-158;Parent=BSGatlas-transcript-459;comment="3'UTR" basu168 BSGatlas terminator 463391 463446 . - . ID=BSGatlas-terminator-242;Parent=BSGatlas-transcript-459;comment="Based on: BsubCyc,DBTBS, Energy: -10.4[kcal/mol]" basu168 BSGatlas gene 463496 463783 . - . ID=BSGatlas-gene-503;color=#3474B3;Name=yczJ;locus_tag=BSU04130,BSU_04130;Parent=BSGatlas-operon-205 basu168 BSGatlas CDS 463496 463783 . - 0 ID=BSGatlas-gene-503_transcribed;color=#3474B3;Name=yczJ;Parent=BSGatlas-transcript-457,BSGatlas-transcript-459;comment="conserved protein of unknown function";synonyms="yczJ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-503 basu168 BSGatlas UTR 463784 463820 . - . ID=BSGatlas-5'UTR-276;Parent=BSGatlas-transcript-457,BSGatlas-transcript-459;comment="5'UTR" basu168 BSGatlas TSS 463820 463820 . - . ID=BSGatlas-TSS-337;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 463903 466944 . + . ID=BSGatlas-operon-207;color=#FF00CC basu168 BSGatlas transcript 463903 466944 . + . ID=BSGatlas-transcript-460;color=#FF9900;Parent=BSGatlas-operon-207,BSGatlas-gene-504,BSGatlas-gene-505;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-338 basu168 BSGatlas exon 463903 466944 . + . ID=BSGatlas-transcript-460_exon;Parent=BSGatlas-transcript-460 basu168 BSGatlas UTR 463903 463933 . + . ID=BSGatlas-5'UTR-277;Parent=BSGatlas-transcript-460;comment="5'UTR" basu168 BSGatlas TSS 463903 463903 . + . ID=BSGatlas-TSS-338;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 463934 465940 . + . ID=BSGatlas-gene-504;color=#1E90FF;Name=pbpC;locus_tag=BSU04140,BSU_04140;Parent=BSGatlas-operon-207 basu168 BSGatlas CDS 463934 465940 . + 0 ID=BSGatlas-gene-504_transcribed;color=#1E90FF;Name=pbpC;Parent=BSGatlas-transcript-460;comment="penicillin-binding lipoprotein 3;transpeptidase";synonyms="pbpC,ycsM,yzsA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.7 Penicillin-binding proteins,SW 6 Groups of genes,SW 6.12 Secreted proteins";go="GO:0005515 protein binding,GO:0005886 plasma membrane,GO:0008360 regulation of cell shape,GO:0008658 penicillin binding,GO:0009252 peptidoglycan biosynthetic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0046677 response to antibiotic";derives_from=BSGatlas-gene-504 basu168 BSGatlas UTR 465941 466041 . + . ID=BSGatlas-internal_UTR-165;Parent=BSGatlas-transcript-460;comment="internal_UTR" basu168 BSGatlas gene 466042 466944 . + . ID=BSGatlas-gene-505;color=#1E90FF;Name=ycsN;locus_tag=BSU04150,BSU_04150;Parent=BSGatlas-operon-207 basu168 BSGatlas CDS 466042 466944 . + 0 ID=BSGatlas-gene-505_transcribed;color=#1E90FF;Name=ycsN;Parent=BSGatlas-transcript-460;comment="putative oxidoreductase";synonyms="ycsN";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.1.1.-";go="GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-505 basu168 BSGatlas terminator 466902 466946 . + . ID=BSGatlas-terminator-243;Parent=BSGatlas-transcript-460;comment="Based on: Nicolas et al. downshift, Energy: -10.6[kcal/mol]" basu168 BSGatlas operon 467042 469263 . + . ID=BSGatlas-operon-208;color=#FF00CC basu168 BSGatlas transcript 467042 469263 . + . ID=BSGatlas-transcript-461;color=#FF9900;Parent=BSGatlas-operon-208,BSGatlas-gene-506;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-339 basu168 BSGatlas exon 467042 469263 . + . ID=BSGatlas-transcript-461_exon;Parent=BSGatlas-transcript-461 basu168 BSGatlas UTR 467042 467129 . + . ID=BSGatlas-5'UTR-278;Parent=BSGatlas-transcript-461;comment="5'UTR" basu168 BSGatlas TSS 467042 467042 . + . ID=BSGatlas-TSS-339;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 467130 469214 . + . ID=BSGatlas-gene-506;color=#1E90FF;Name=mtlR;locus_tag=BSU04160,BSU_04160;Parent=BSGatlas-operon-208 basu168 BSGatlas CDS 467130 469214 . + 0 ID=BSGatlas-gene-506_transcribed;color=#1E90FF;Name=mtlR;Parent=BSGatlas-transcript-461;comment="transcriptional regulator, PTS-dependentactivator";synonyms="mtlR,ydaA";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.10 Utilization of mannitol,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.3 PRD-type regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.3 Phosphorylation on a Cys residue";go="GO:0003677 DNA binding,GO:0005215 transporter activity,GO:0005351 carbohydrate:proton symporter activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0006810 transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015992 NA,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-506 basu168 BSGatlas UTR 469215 469263 . + . ID=BSGatlas-3'UTR-159;Parent=BSGatlas-transcript-461;comment="3'UTR" basu168 BSGatlas terminator 469220 469263 . + . ID=BSGatlas-terminator-244;Parent=BSGatlas-transcript-461;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -15.2[kcal/mol]" basu168 BSGatlas operon 469275 470937 . + . ID=BSGatlas-operon-209;color=#FF00CC basu168 BSGatlas transcript 469275 470937 . + . ID=BSGatlas-transcript-462;color=#FF9900;Parent=BSGatlas-operon-209,BSGatlas-gene-507;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-340 basu168 BSGatlas exon 469275 470937 . + . ID=BSGatlas-transcript-462_exon;Parent=BSGatlas-transcript-462 basu168 BSGatlas UTR 469275 469425 . + . ID=BSGatlas-5'UTR-279;Parent=BSGatlas-transcript-462;comment="5'UTR" basu168 BSGatlas TSS 469275 469275 . + . ID=BSGatlas-TSS-340;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 469369 470937 . + . ID=BSGatlas-transcript-463;color=#FF9900;Parent=BSGatlas-operon-209,BSGatlas-gene-507;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-341 basu168 BSGatlas exon 469369 470937 . + . ID=BSGatlas-transcript-463_exon;Parent=BSGatlas-transcript-463 basu168 BSGatlas UTR 469369 469425 . + . ID=BSGatlas-5'UTR-280;Parent=BSGatlas-transcript-463;comment="5'UTR" basu168 BSGatlas TSS 469369 469369 . + . ID=BSGatlas-TSS-341;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 469426 470937 . + . ID=BSGatlas-gene-507;color=#1E90FF;Name=ydaB;locus_tag=BSU04170,BSU_04170;Parent=BSGatlas-operon-209 basu168 BSGatlas CDS 469426 470937 . + 0 ID=BSGatlas-gene-507_transcribed;color=#1E90FF;Name=ydaB;Parent=BSGatlas-transcript-462,BSGatlas-transcript-463;comment="putative acyl-CoA ligase";synonyms="ydaB";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="6.2.1.-,EC-6.2.1.3";go="GO:0000166 nucleotide binding,GO:0003824 catalytic activity,GO:0005524 ATP binding,GO:0008152 metabolic process,GO:0016874 ligase activity";derives_from=BSGatlas-gene-507 basu168 BSGatlas terminator 470899 470943 . + . ID=BSGatlas-terminator-245;Parent=BSGatlas-transcript-462,BSGatlas-transcript-463;comment="Based on: Nicolas et al. downshift, Energy: -12.4[kcal/mol]" basu168 BSGatlas operon 470957 471583 . - . ID=BSGatlas-operon-210;color=#B32496 basu168 BSGatlas transcript 470957 471583 . - . ID=BSGatlas-transcript-464;color=#B37924;Parent=BSGatlas-operon-210,BSGatlas-gene-508;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-342 basu168 BSGatlas exon 470957 471583 . - . ID=BSGatlas-transcript-464_exon;Parent=BSGatlas-transcript-464 basu168 BSGatlas gene 470957 471502 . - . ID=BSGatlas-gene-508;color=#3474B3;Name=ydaC;locus_tag=BSU04180,BSU_04180;Parent=BSGatlas-operon-210 basu168 BSGatlas CDS 470957 471502 . - 0 ID=BSGatlas-gene-508_transcribed;color=#3474B3;Name=ydaC;Parent=BSGatlas-transcript-464;comment="putative methyltransferase";synonyms="ydaC";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="2.1.1.-";go="GO:0008152 metabolic process,GO:0008168 methyltransferase activity,GO:0016740 transferase activity,GO:0032259 methylation";derives_from=BSGatlas-gene-508 basu168 BSGatlas terminator 470968 471012 . - . ID=BSGatlas-terminator-246;Parent=BSGatlas-transcript-464;comment="Based on: Nicolas et al. downshift, Energy: -11.5[kcal/mol]" basu168 BSGatlas UTR 471503 471583 . - . ID=BSGatlas-5'UTR-281;Parent=BSGatlas-transcript-464;comment="5'UTR" basu168 BSGatlas TSS 471583 471583 . - . ID=BSGatlas-TSS-342;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 471679 474225 . + . ID=BSGatlas-operon-211;color=#FF00CC basu168 BSGatlas transcript 471679 474225 . + . ID=BSGatlas-transcript-466;color=#FF9900;Parent=BSGatlas-operon-211,BSGatlas-gene-509,BSGatlas-gene-510,BSGatlas-gene-511,BSGatlas-gene-512;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-343 basu168 BSGatlas exon 471679 474225 . + . ID=BSGatlas-transcript-466_exon;Parent=BSGatlas-transcript-466 basu168 BSGatlas transcript 471679 473110 . + . ID=BSGatlas-transcript-465;color=#FF9900;Parent=BSGatlas-operon-211,BSGatlas-gene-509,BSGatlas-gene-510;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-343 basu168 BSGatlas exon 471679 473110 . + . ID=BSGatlas-transcript-465_exon;Parent=BSGatlas-transcript-465 basu168 BSGatlas UTR 471679 471708 . + . ID=BSGatlas-5'UTR-282;Parent=BSGatlas-transcript-465,BSGatlas-transcript-466;comment="5'UTR" basu168 BSGatlas TSS 471679 471679 . + . ID=BSGatlas-TSS-343;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10220166,17962296" basu168 BSGatlas gene 471709 472569 . + . ID=BSGatlas-gene-509;color=#1E90FF;Name=ydaD;locus_tag=BSU04190,BSU_04190;Parent=BSGatlas-operon-211 basu168 BSGatlas CDS 471709 472569 . + 0 ID=BSGatlas-gene-509_transcribed;color=#1E90FF;Name=ydaD;Parent=BSGatlas-transcript-465,BSGatlas-transcript-466;comment="putative dehydrogenase";synonyms="ydaD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.1.1.-";go="GO:0006950 response to stress,GO:0008152 metabolic process,GO:0016491 oxidoreductase activity,GO:0042542 response to hydrogen peroxide,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-509 basu168 BSGatlas gene 472585 473088 . + . ID=BSGatlas-gene-510;color=#1E90FF;Name=lyxE;locus_tag=BSU04200,BSU_04200;Parent=BSGatlas-operon-211 basu168 BSGatlas CDS 472585 473088 . + 0 ID=BSGatlas-gene-510_transcribed;color=#1E90FF;Name=lyxE;Parent=BSGatlas-transcript-465,BSGatlas-transcript-466;comment="D-lyxose ketol isomerase";synonyms="ydaE";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.28 Utilization of other pentoses and hexoses,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";ec="5.3.1.15";go="GO:0000303 response to superoxide,GO:0005975 carbohydrate metabolic process,GO:0016853 isomerase activity,GO:0046872 metal ion binding,GO:0047828 D-lyxose ketol-isomerase activity";derives_from=BSGatlas-gene-510 basu168 BSGatlas UTR 473089 473173 . + . ID=BSGatlas-internal_UTR-166;Parent=BSGatlas-transcript-466;comment="internal_UTR" basu168 BSGatlas terminator 473089 473110 . + . ID=BSGatlas-terminator-247;Parent=BSGatlas-transcript-465;comment="Based on: BsubCyc,Nicolas et al. downshift, Energy: -15.5[kcal/mol]" basu168 BSGatlas UTR 473089 473110 . + . ID=BSGatlas-3'UTR-160;Parent=BSGatlas-transcript-465;comment="3'UTR" basu168 BSGatlas transcript 473140 474225 . + . ID=BSGatlas-transcript-467;color=#FF9900;Parent=BSGatlas-operon-211,BSGatlas-gene-511,BSGatlas-gene-512;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-344 basu168 BSGatlas exon 473140 474225 . + . ID=BSGatlas-transcript-467_exon;Parent=BSGatlas-transcript-467 basu168 BSGatlas UTR 473140 473173 . + . ID=BSGatlas-5'UTR-283;Parent=BSGatlas-transcript-467;comment="5'UTR" basu168 BSGatlas TSS 473140 473140 . + . ID=BSGatlas-TSS-344;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 473174 473725 . + . ID=BSGatlas-gene-511;color=#1E90FF;Name=ydaF;locus_tag=BSU04210,BSU_04210;Parent=BSGatlas-operon-211 basu168 BSGatlas CDS 473174 473725 . + 0 ID=BSGatlas-gene-511_transcribed;color=#1E90FF;Name=ydaF;Parent=BSGatlas-transcript-466,BSGatlas-transcript-467;comment="putative ribosomal protein N-acetyltransferase";synonyms="ydaF";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="2.3.1.-";go="GO:0008080 N-acetyltransferase activity,GO:0008152 metabolic process,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups";derives_from=BSGatlas-gene-511 basu168 BSGatlas UTR 473726 473802 . + . ID=BSGatlas-internal_UTR-167;Parent=BSGatlas-transcript-466,BSGatlas-transcript-467;comment="internal_UTR" basu168 BSGatlas transcript 473775 474225 . + . ID=BSGatlas-transcript-468;color=#FF9900;Parent=BSGatlas-operon-211,BSGatlas-gene-512;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-345 basu168 BSGatlas exon 473775 474225 . + . ID=BSGatlas-transcript-468_exon;Parent=BSGatlas-transcript-468 basu168 BSGatlas UTR 473775 473802 . + . ID=BSGatlas-5'UTR-284;Parent=BSGatlas-transcript-468;comment="5'UTR" basu168 BSGatlas TSS 473775 473775 . + . ID=BSGatlas-TSS-345;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10220166" basu168 BSGatlas gene 473803 474225 . + . ID=BSGatlas-gene-512;color=#1E90FF;Name=ydaG;locus_tag=BSU04220,BSU_04220;Parent=BSGatlas-operon-211 basu168 BSGatlas CDS 473803 474225 . + 0 ID=BSGatlas-gene-512_transcribed;color=#1E90FF;Name=ydaG;Parent=BSGatlas-transcript-466,BSGatlas-transcript-467,BSGatlas-transcript-468;comment="putative general stress protein";synonyms="ydaG,yzzA";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.8 Resistance against oxidative and electrophile stress";go="GO:0000303 response to superoxide,GO:0004733 pyridoxamine-phosphate oxidase activity,GO:0006950 response to stress,GO:0010181 FMN binding,GO:0016491 oxidoreductase activity,GO:0042823 pyridoxal phosphate biosynthetic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-512 basu168 BSGatlas operon 474268 474657 . + . ID=BSGatlas-operon-212;color=#FF00CC basu168 BSGatlas transcript 474268 474657 . + . ID=BSGatlas-transcript-470;color=#FF9900;Parent=BSGatlas-operon-212,BSGatlas-gene-513;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-346 basu168 BSGatlas exon 474268 474657 . + . ID=BSGatlas-transcript-470_exon;Parent=BSGatlas-transcript-470 basu168 BSGatlas gene 474268 474634 . + . ID=BSGatlas-gene-513;color=#CC0000;Name=S140;locus_tag=new_474268_474634;Parent=BSGatlas-operon-212 basu168 BSGatlas transcript 474268 474634 . + . ID=BSGatlas-transcript-469;color=#FF9900;Parent=BSGatlas-operon-212,BSGatlas-gene-513;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-346 basu168 BSGatlas ncRNA 474268 474634 . + . ID=BSGatlas-gene-513_transcribed;color=#CC0000;Name=S140;Parent=BSGatlas-transcript-469,BSGatlas-transcript-470;synonyms="S140";derives_from=BSGatlas-gene-513 basu168 BSGatlas exon 474268 474634 . + . ID=BSGatlas-transcript-469_exon;Parent=BSGatlas-transcript-469 basu168 BSGatlas TSS 474268 474268 . + . ID=BSGatlas-TSS-346;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 474329 474597 . - . ID=BSGatlas-operon-213;color=#B32496 basu168 BSGatlas gene 474329 474597 . - . ID=BSGatlas-gene-514;color=#24B324;Name=BsrC_bsrC;locus_tag=BSU_misc_RNA_64,G8J2-159;Parent=BSGatlas-operon-213 basu168 BSGatlas transcript 474329 474597 . - . ID=BSGatlas-transcript-471;color=#B37924;Parent=BSGatlas-operon-213,BSGatlas-gene-514;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-347 basu168 BSGatlas sRNA 474329 474597 . - . ID=BSGatlas-gene-514_transcribed;color=#24B324;Name=BsrC_bsrC;Parent=BSGatlas-transcript-471;comment="small regulatory RNA";derives_from=BSGatlas-gene-514 basu168 BSGatlas exon 474329 474597 . - . ID=BSGatlas-transcript-471_exon;Parent=BSGatlas-transcript-471 basu168 BSGatlas TSS 474334 474334 . - . ID=BSGatlas-TSS-347;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 474569 474613 . + . ID=BSGatlas-terminator-248;Parent=BSGatlas-transcript-469;comment="Based on: Nicolas et al. downshift, Energy: -12[kcal/mol]" basu168 BSGatlas terminator 474616 474657 . + . ID=BSGatlas-terminator-249;Parent=BSGatlas-transcript-470;comment="Based on: BsubCyc,DBTBS, Energy: -15.3[kcal/mol]" basu168 BSGatlas UTR 474635 474657 . + . ID=BSGatlas-3'UTR-161;Parent=BSGatlas-transcript-470;comment="3'UTR" basu168 BSGatlas operon 474698 475540 . + . ID=BSGatlas-operon-214;color=#FF00CC basu168 BSGatlas transcript 474698 475540 . + . ID=BSGatlas-transcript-472;color=#FF9900;Parent=BSGatlas-operon-214,BSGatlas-gene-515;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-348 basu168 BSGatlas exon 474698 475540 . + . ID=BSGatlas-transcript-472_exon;Parent=BSGatlas-transcript-472 basu168 BSGatlas UTR 474698 474730 . + . ID=BSGatlas-5'UTR-285;Parent=BSGatlas-transcript-472;comment="5'UTR" basu168 BSGatlas TSS 474698 474698 . + . ID=BSGatlas-TSS-348;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 474731 475540 . + . ID=BSGatlas-gene-515;color=#1E90FF;Name=amj;locus_tag=BSU04230,BSU_04230;Parent=BSGatlas-operon-214 basu168 BSGatlas CDS 474731 475540 . + 0 ID=BSGatlas-gene-515_transcribed;color=#1E90FF;Name=amj;Parent=BSGatlas-transcript-472;comment="lipid II flippase";synonyms="amj,ydaH";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-515 basu168 BSGatlas terminator 475499 475543 . + . ID=BSGatlas-terminator-250;Parent=BSGatlas-transcript-472;comment="Based on: Nicolas et al. downshift, Energy: -14.9[kcal/mol]" basu168 BSGatlas operon 475566 475918 . - . ID=BSGatlas-operon-215;color=#B32496 basu168 BSGatlas transcript 475566 475918 . - . ID=BSGatlas-transcript-473;color=#B37924;Parent=BSGatlas-operon-215,BSGatlas-gene-516;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-350 basu168 BSGatlas exon 475566 475918 . - . ID=BSGatlas-transcript-473_exon;Parent=BSGatlas-transcript-473 basu168 BSGatlas terminator 475566 475610 . - . ID=BSGatlas-terminator-251;Parent=BSGatlas-transcript-473;comment="Based on: Nicolas et al. downshift, Energy: -14.9[kcal/mol]" basu168 BSGatlas UTR 475566 475583 . - . ID=BSGatlas-3'UTR-162;Parent=BSGatlas-transcript-473;comment="3'UTR" basu168 BSGatlas gene 475584 475874 . - . ID=BSGatlas-gene-516;color=#3474B3;Name=ydzA;locus_tag=BSU04240,BSU_04240;Parent=BSGatlas-operon-215 basu168 BSGatlas CDS 475584 475874 . - 0 ID=BSGatlas-gene-516_transcribed;color=#3474B3;Name=ydzA;Parent=BSGatlas-transcript-473;comment="conserved protein of unknown function";synonyms="ydzA";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-516 basu168 BSGatlas UTR 475875 475918 . - . ID=BSGatlas-5'UTR-286;Parent=BSGatlas-transcript-473;comment="5'UTR" basu168 BSGatlas operon 475908 478741 . + . ID=BSGatlas-operon-216;color=#FF00CC basu168 BSGatlas transcript 475908 478741 . + . ID=BSGatlas-transcript-475;color=#FF9900;Parent=BSGatlas-operon-216,BSGatlas-gene-517,BSGatlas-gene-518;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-349 basu168 BSGatlas exon 475908 478741 . + . ID=BSGatlas-transcript-475_exon;Parent=BSGatlas-transcript-475 basu168 BSGatlas transcript 475908 476493 . + . ID=BSGatlas-transcript-474;color=#FF9900;Parent=BSGatlas-operon-216,BSGatlas-gene-517;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-349 basu168 BSGatlas exon 475908 476493 . + . ID=BSGatlas-transcript-474_exon;Parent=BSGatlas-transcript-474 basu168 BSGatlas UTR 475908 476058 . + . ID=BSGatlas-5'UTR-287;Parent=BSGatlas-transcript-474,BSGatlas-transcript-475;comment="5'UTR" basu168 BSGatlas TSS 475908 475908 . + . ID=BSGatlas-TSS-349;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 475918 475918 . - . ID=BSGatlas-TSS-350;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 476033 478741 . + . ID=BSGatlas-transcript-477;color=#FF9900;Parent=BSGatlas-operon-216,BSGatlas-gene-517,BSGatlas-gene-518;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-351 basu168 BSGatlas exon 476033 478741 . + . ID=BSGatlas-transcript-477_exon;Parent=BSGatlas-transcript-477 basu168 BSGatlas transcript 476033 476493 . + . ID=BSGatlas-transcript-476;color=#FF9900;Parent=BSGatlas-operon-216,BSGatlas-gene-517;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-351 basu168 BSGatlas exon 476033 476493 . + . ID=BSGatlas-transcript-476_exon;Parent=BSGatlas-transcript-476 basu168 BSGatlas UTR 476033 476058 . + . ID=BSGatlas-5'UTR-288;Parent=BSGatlas-transcript-476,BSGatlas-transcript-477;comment="5'UTR" basu168 BSGatlas TSS 476033 476033 . + . ID=BSGatlas-TSS-351;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10913073,17962296" basu168 BSGatlas gene 476059 476493 . + . ID=BSGatlas-gene-517;color=#1E90FF;Name=lrpC;locus_tag=BSU04250,BSU_04250;Parent=BSGatlas-operon-216 basu168 BSGatlas CDS 476059 476493 . + 0 ID=BSGatlas-gene-517_transcribed;color=#1E90FF;Name=lrpC;Parent=BSGatlas-transcript-474,BSGatlas-transcript-475,BSGatlas-transcript-476,BSGatlas-transcript-477;comment="transcriptional regulator (Lrp/AsnC family)";synonyms="lrpC,ydaI";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-517 basu168 BSGatlas UTR 476494 476557 . + . ID=BSGatlas-internal_UTR-168;Parent=BSGatlas-transcript-475,BSGatlas-transcript-477;comment="internal_UTR" basu168 BSGatlas transcript 476502 478741 . + . ID=BSGatlas-transcript-478;color=#FF9900;Parent=BSGatlas-operon-216,BSGatlas-gene-518;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-352 basu168 BSGatlas exon 476502 478741 . + . ID=BSGatlas-transcript-478_exon;Parent=BSGatlas-transcript-478 basu168 BSGatlas UTR 476502 476557 . + . ID=BSGatlas-5'UTR-289;Parent=BSGatlas-transcript-478;comment="5'UTR" basu168 BSGatlas TSS 476502 476502 . + . ID=BSGatlas-TSS-352;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 476558 478741 . + . ID=BSGatlas-gene-518;color=#1E90FF;Name=topB;locus_tag=BSU04260,BSU_04260;Parent=BSGatlas-operon-216 basu168 BSGatlas CDS 476558 478741 . + 0 ID=BSGatlas-gene-518_transcribed;color=#1E90FF;Name=topB;Parent=BSGatlas-transcript-475,BSGatlas-transcript-477,BSGatlas-transcript-478;comment="DNA topoisomerase III";synonyms="topB";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.1 DNA replication,SW 3.1.3 DNA condensation/ segregation";ec="5.99.1.2,EC-5.99.1.2";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0003677 DNA binding,GO:0003916 DNA topoisomerase activity,GO:0003917 DNA topoisomerase type I activity,GO:0005524 ATP binding,GO:0006265 DNA topological change,GO:0016853 isomerase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-518 basu168 BSGatlas terminator 478702 478746 . + . ID=BSGatlas-terminator-252;Parent=BSGatlas-transcript-475,BSGatlas-transcript-477,BSGatlas-transcript-478;comment="Based on: Nicolas et al. downshift, Energy: -10.4[kcal/mol]" basu168 BSGatlas operon 478812 485956 . + . ID=BSGatlas-operon-217;color=#FF00CC basu168 BSGatlas transcript 478812 485956 . + . ID=BSGatlas-transcript-479;color=#FF9900;Parent=BSGatlas-operon-217,BSGatlas-gene-519,BSGatlas-gene-520,BSGatlas-gene-521,BSGatlas-gene-522,BSGatlas-gene-523;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-353 basu168 BSGatlas exon 478812 485956 . + . ID=BSGatlas-transcript-479_exon;Parent=BSGatlas-transcript-479 basu168 BSGatlas UTR 478812 478943 . + . ID=BSGatlas-5'UTR-290;Parent=BSGatlas-transcript-479;comment="5'UTR" basu168 BSGatlas TSS 478812 478812 . + . ID=BSGatlas-TSS-353;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 478944 480032 . + . ID=BSGatlas-gene-519;color=#1E90FF;Name=epsJ;locus_tag=BSU04270,BSU_04270;Parent=BSGatlas-operon-217 basu168 BSGatlas CDS 478944 480032 . + 0 ID=BSGatlas-gene-519_transcribed;color=#1E90FF;Name=epsJ;Parent=BSGatlas-transcript-479;comment="glycosyl hydrolase lipoprotein";synonyms="ydaJ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.12 Secreted proteins";go="GO:0003824 catalytic activity,GO:0005886 plasma membrane,GO:0008152 metabolic process,GO:0016020 membrane";derives_from=BSGatlas-gene-519 basu168 BSGatlas gene 480013 480864 . + . ID=BSGatlas-gene-520;color=#1E90FF;Name=epsK;locus_tag=BSU04280,BSU_04280;Parent=BSGatlas-operon-217 basu168 BSGatlas CDS 480013 480864 . + 0 ID=BSGatlas-gene-520_transcribed;color=#1E90FF;Name=epsK;Parent=BSGatlas-transcript-479;comment="cyclic-di-GMP receptor";synonyms="ydaK";subtiwiki_category="SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.2 Targets of c-di-GMP,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0005886 plasma membrane,GO:0009190 cyclic nucleotide biosynthetic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016849 phosphorus-oxygen lyase activity,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-520 basu168 BSGatlas gene 480875 482584 . + . ID=BSGatlas-gene-521;color=#1E90FF;Name=ydaL;locus_tag=BSU04290,BSU_04290;Parent=BSGatlas-operon-217 basu168 BSGatlas CDS 480875 482584 . + 0 ID=BSGatlas-gene-521_transcribed;color=#1E90FF;Name=ydaL;Parent=BSGatlas-transcript-479;comment="conserved protein of unknown function";synonyms="ydaL";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-521 basu168 BSGatlas gene 482577 483839 . + . ID=BSGatlas-gene-522;color=#1E90FF;Name=ydaM;locus_tag=BSU04300,BSU_04300;Parent=BSGatlas-operon-217 basu168 BSGatlas CDS 482577 483839 . + 0 ID=BSGatlas-gene-522_transcribed;color=#1E90FF;Name=ydaM;Parent=BSGatlas-transcript-479;comment="putative glycosyltransferase associated tobiofilm formation";synonyms="ydaM";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="2.4.-.-";go="GO:0008152 metabolic process,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016740 transferase activity,GO:0016757 transferase activity, transferring glycosyl groups";derives_from=BSGatlas-gene-522 basu168 BSGatlas gene 483845 485956 . + . ID=BSGatlas-gene-523;color=#1E90FF;Name=ydaN;locus_tag=BSU04310,BSU_04310;Parent=BSGatlas-operon-217 basu168 BSGatlas CDS 483845 485956 . + 0 ID=BSGatlas-gene-523_transcribed;color=#1E90FF;Name=ydaN;Parent=BSGatlas-transcript-479;comment="putative regulator of exopolysaccharidesynthesis";synonyms="ydaN";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0005886 plasma membrane,GO:0006011 UDP-glucose metabolic process,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-523 basu168 BSGatlas terminator 485918 485962 . + . ID=BSGatlas-terminator-253;Parent=BSGatlas-transcript-479;comment="Based on: Nicolas et al. downshift, Energy: -9.9[kcal/mol]" basu168 BSGatlas operon 486082 488255 . + . ID=BSGatlas-operon-218;color=#FF00CC basu168 BSGatlas transcript 486082 488255 . + . ID=BSGatlas-transcript-480;color=#FF9900;Parent=BSGatlas-operon-218,BSGatlas-gene-525;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-354 basu168 BSGatlas exon 486082 488255 . + . ID=BSGatlas-transcript-480_exon;Parent=BSGatlas-transcript-480 basu168 BSGatlas UTR 486082 486431 . + . ID=BSGatlas-5'UTR-291;Parent=BSGatlas-transcript-480;comment="5'UTR" basu168 BSGatlas TSS 486082 486082 . + . ID=BSGatlas-TSS-354;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 486091 486255 . + . ID=BSGatlas-operon-219;color=#FF00CC basu168 BSGatlas transcript 486091 486255 . + . ID=BSGatlas-transcript-481;color=#FF9900;Parent=BSGatlas-operon-219,BSGatlas-gene-524;comment="Based on: BSGatlas" basu168 BSGatlas exon 486091 486255 . + . ID=BSGatlas-transcript-481_exon;Parent=BSGatlas-transcript-481 basu168 BSGatlas gene 486091 486235 . + . ID=BSGatlas-gene-524;color=#999999;Name=ydaO-yuaA_swaO;locus_tag=BSU_misc_RNA_7,BSU_MISC_RNA_7;Parent=BSGatlas-operon-219 basu168 BSGatlas riboswitch 486091 486235 . + . ID=BSGatlas-gene-524_transcribed;color=#999999;Name=ydaO-yuaA_swaO;Parent=BSGatlas-transcript-481;comment="ATP-, cyclic di-AMP-sensing riboswitch";synonyms="BSU_misc_RNA_7,c-di-AMP riboswitch,c-di-AMP riboswitch, kimA,kimA,ydaO riboswitch";subtiwiki_category="SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.1 Targets of c-di-AMP";derives_from=BSGatlas-gene-524 basu168 BSGatlas terminator 486211 486255 . + . ID=BSGatlas-terminator-254;Parent=BSGatlas-transcript-481;comment="Based on: Nicolas et al. downshift, Energy: -14.7[kcal/mol]" basu168 BSGatlas UTR 486236 486255 . + . ID=BSGatlas-3'UTR-163;Parent=BSGatlas-transcript-481;comment="3'UTR" basu168 BSGatlas gene 486432 488255 . + . ID=BSGatlas-gene-525;color=#1E90FF;Name=kimA;locus_tag=BSU04320,BSU_04320;Parent=BSGatlas-operon-218 basu168 BSGatlas CDS 486432 488255 . + 0 ID=BSGatlas-gene-525_transcribed;color=#1E90FF;Name=kimA;Parent=BSGatlas-transcript-480;comment="cyclic di-AMP controlled transporter ofpotassium";synonyms="kimA,ydaO";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.5 Metal ion transporter,SW 1.3 Homeostasis,SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg),SW 1.3.1.3 Potassium uptake/ export,SW 3 Information processing,SW 3.5 Targets of second messengers,SW 3.5.1 Targets of c-di-AMP,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-525 basu168 BSGatlas terminator 488225 488269 . + . ID=BSGatlas-terminator-255;Parent=BSGatlas-transcript-480;comment="Based on: Nicolas et al. downshift, Energy: -13.9[kcal/mol]" basu168 BSGatlas gene 488314 488763 . + . ID=BSGatlas-gene-526;color=#1E90FF;Name=nudT;locus_tag=BSU04330,BSU_04330 basu168 BSGatlas CDS 488314 488763 . + 0 ID=BSGatlas-gene-526_transcribed;color=#1E90FF;Name=nudT;comment="putative NTP pyrophosphohydrolase";synonyms="mutT,nudG";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins";ec="3.6.1.-,EC-3.6.1.9";go="GO:0006260 DNA replication,GO:0006281 DNA repair,GO:0006974 cellular response to DNA damage stimulus,GO:0016787 hydrolase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-526 basu168 BSGatlas operon 488811 490596 . + . ID=BSGatlas-operon-220;color=#FF00CC basu168 BSGatlas transcript 488811 490596 . + . ID=BSGatlas-transcript-482;color=#FF9900;Parent=BSGatlas-operon-220,BSGatlas-gene-527;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-355 basu168 BSGatlas exon 488811 490596 . + . ID=BSGatlas-transcript-482_exon;Parent=BSGatlas-transcript-482 basu168 BSGatlas UTR 488811 488829 . + . ID=BSGatlas-5'UTR-292;Parent=BSGatlas-transcript-482;comment="5'UTR" basu168 BSGatlas TSS 488811 488811 . + . ID=BSGatlas-TSS-355;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 10220166,17962296" basu168 BSGatlas gene 488830 490554 . + . ID=BSGatlas-gene-527;color=#1E90FF;Name=poxB;locus_tag=BSU04340,BSU_04340;Parent=BSGatlas-operon-220 basu168 BSGatlas CDS 488830 490554 . + 0 ID=BSGatlas-gene-527_transcribed;color=#1E90FF;Name=poxB;Parent=BSGatlas-transcript-482;comment="acetyl-phosphate generating pyruvate oxidase";synonyms="ydaP";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.2.3.3";go="GO:0000287 magnesium ion binding,GO:0000303 response to superoxide,GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0030976 thiamine pyrophosphate binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-527 basu168 BSGatlas operon 489633 490638 . - . ID=BSGatlas-operon-221;color=#B32496 basu168 BSGatlas transcript 489633 490638 . - . ID=BSGatlas-transcript-483;color=#B37924;Parent=BSGatlas-operon-221,BSGatlas-gene-528;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-356 basu168 BSGatlas exon 489633 490638 . - . ID=BSGatlas-transcript-483_exon;Parent=BSGatlas-transcript-483 basu168 BSGatlas UTR 489633 490526 . - . ID=BSGatlas-3'UTR-164;Parent=BSGatlas-transcript-483;comment="3'UTR" basu168 BSGatlas terminator 489633 489699 . - . ID=BSGatlas-terminator-256;Parent=BSGatlas-transcript-483;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas gene 490527 490638 . - . ID=BSGatlas-gene-528;color=#8F1D1D;Name=S144;locus_tag=new_490527_490638_c;Parent=BSGatlas-operon-221 basu168 BSGatlas ncRNA 490527 490638 . - . ID=BSGatlas-gene-528_transcribed;color=#8F1D1D;Name=S144;Parent=BSGatlas-transcript-483;synonyms="S144";derives_from=BSGatlas-gene-528 basu168 BSGatlas operon 490546 490749 . - . ID=BSGatlas-operon-222;color=#B32496 basu168 BSGatlas gene 490546 490749 . - . ID=BSGatlas-gene-529;color=#3474B3;locus_tag=BSU_04345;Parent=BSGatlas-operon-222 basu168 BSGatlas transcript 490546 490749 . - . ID=BSGatlas-transcript-484;color=#B37924;Parent=BSGatlas-operon-222,BSGatlas-gene-529;comment="Based on: BSGatlas" basu168 BSGatlas CDS 490546 490749 . - 0 ID=BSGatlas-gene-529_transcribed;color=#3474B3;Parent=BSGatlas-transcript-484;comment="hypothetical protein";derives_from=BSGatlas-gene-529 basu168 BSGatlas exon 490546 490749 . - . ID=BSGatlas-transcript-484_exon;Parent=BSGatlas-transcript-484 basu168 BSGatlas terminator 490548 490592 . - . ID=BSGatlas-terminator-257;Parent=BSGatlas-transcript-484;comment="Based on: Nicolas et al. downshift, Energy: -9.1[kcal/mol]" basu168 BSGatlas terminator 490554 490596 . + . ID=BSGatlas-terminator-258;Parent=BSGatlas-transcript-482;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.4[kcal/mol]" basu168 BSGatlas UTR 490555 490596 . + . ID=BSGatlas-3'UTR-165;Parent=BSGatlas-transcript-482;comment="3'UTR" basu168 BSGatlas TSS 490638 490638 . - . ID=BSGatlas-TSS-356;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 490639 490854 . + . ID=BSGatlas-operon-223;color=#FF00CC basu168 BSGatlas gene 490639 490854 . + . ID=BSGatlas-gene-530;color=#CC0000;Name=S145;locus_tag=new_490639_490854;Parent=BSGatlas-operon-223 basu168 BSGatlas transcript 490639 490854 . + . ID=BSGatlas-transcript-485;color=#FF9900;Parent=BSGatlas-operon-223,BSGatlas-gene-530;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-357 basu168 BSGatlas ncRNA 490639 490854 . + . ID=BSGatlas-gene-530_transcribed;color=#CC0000;Name=S145;Parent=BSGatlas-transcript-485;synonyms="S145";derives_from=BSGatlas-gene-530 basu168 BSGatlas exon 490639 490854 . + . ID=BSGatlas-transcript-485_exon;Parent=BSGatlas-transcript-485 basu168 BSGatlas TSS 490639 490639 . + . ID=BSGatlas-TSS-357;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 490726 491077 . - . ID=BSGatlas-operon-224;color=#B32496 basu168 BSGatlas transcript 490726 491077 . - . ID=BSGatlas-transcript-486;color=#B37924;Parent=BSGatlas-operon-224,BSGatlas-gene-531;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-358 basu168 BSGatlas exon 490726 491077 . - . ID=BSGatlas-transcript-486_exon;Parent=BSGatlas-transcript-486 basu168 BSGatlas UTR 490726 490776 . - . ID=BSGatlas-3'UTR-166;Parent=BSGatlas-transcript-486;comment="3'UTR" basu168 BSGatlas terminator 490726 490770 . - . ID=BSGatlas-terminator-259;Parent=BSGatlas-transcript-486;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -20.3[kcal/mol]" basu168 BSGatlas gene 490777 491043 . - . ID=BSGatlas-gene-531;color=#3474B3;Name=ydzK;locus_tag=BSU04359,BSU_04359;Parent=BSGatlas-operon-224 basu168 BSGatlas CDS 490777 491043 . - 0 ID=BSGatlas-gene-531_transcribed;color=#3474B3;Name=ydzK;Parent=BSGatlas-transcript-486;comment="putative membrane protein";synonyms="ydzK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-531 basu168 BSGatlas UTR 491044 491077 . - . ID=BSGatlas-5'UTR-293;Parent=BSGatlas-transcript-486;comment="5'UTR" basu168 BSGatlas TSS 491077 491077 . - . ID=BSGatlas-TSS-358;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 491110 492577 . - . ID=BSGatlas-operon-225;color=#B32496 basu168 BSGatlas transcript 491110 492577 . - . ID=BSGatlas-transcript-488;color=#B37924;Parent=BSGatlas-operon-225,BSGatlas-gene-532;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-360 basu168 BSGatlas exon 491110 492577 . - . ID=BSGatlas-transcript-488_exon;Parent=BSGatlas-transcript-488 basu168 BSGatlas transcript 491110 492498 . - . ID=BSGatlas-transcript-487;color=#B37924;Parent=BSGatlas-operon-225,BSGatlas-gene-532;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-359 basu168 BSGatlas exon 491110 492498 . - . ID=BSGatlas-transcript-487_exon;Parent=BSGatlas-transcript-487 basu168 BSGatlas terminator 491110 491155 . - . ID=BSGatlas-terminator-260;Parent=BSGatlas-transcript-487,BSGatlas-transcript-488;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas UTR 491110 491146 . - . ID=BSGatlas-3'UTR-167;Parent=BSGatlas-transcript-487,BSGatlas-transcript-488;comment="3'UTR" basu168 BSGatlas gene 491147 492424 . - . ID=BSGatlas-gene-532;color=#3474B3;Name=mntH;locus_tag=BSU04360,BSU_04360;Parent=BSGatlas-operon-225 basu168 BSGatlas CDS 491147 492424 . - 0 ID=BSGatlas-gene-532_transcribed;color=#3474B3;Name=mntH;Parent=BSGatlas-transcript-487,BSGatlas-transcript-488;comment="proton-coupled manganese transporter";synonyms="mntH,ydaR";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.5 Metal ion transporter,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.2 Manganese,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006811 ion transport,GO:0015293 symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030001 metal ion transport,GO:0046872 metal ion binding,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-532 basu168 BSGatlas UTR 492425 492577 . - . ID=BSGatlas-5'UTR-295;Parent=BSGatlas-transcript-488;comment="5'UTR" basu168 BSGatlas UTR 492425 492498 . - . ID=BSGatlas-5'UTR-294;Parent=BSGatlas-transcript-487;comment="5'UTR" basu168 BSGatlas TSS 492498 492498 . - . ID=BSGatlas-TSS-359;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 492577 492577 . - . ID=BSGatlas-TSS-360;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 492595 494928 . - . ID=BSGatlas-operon-226;color=#B32496 basu168 BSGatlas transcript 492595 494928 . - . ID=BSGatlas-transcript-491;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-534,BSGatlas-gene-533;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-364 basu168 BSGatlas exon 492595 494928 . - . ID=BSGatlas-transcript-491_exon;Parent=BSGatlas-transcript-491 basu168 BSGatlas transcript 492595 493477 . - . ID=BSGatlas-transcript-490;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-534,BSGatlas-gene-533;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-361 basu168 BSGatlas exon 492595 493477 . - . ID=BSGatlas-transcript-490_exon;Parent=BSGatlas-transcript-490 basu168 BSGatlas transcript 492595 492911 . - . ID=BSGatlas-transcript-489;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-533;comment="Based on: SubtiWiki" basu168 BSGatlas exon 492595 492911 . - . ID=BSGatlas-transcript-489_exon;Parent=BSGatlas-transcript-489 basu168 BSGatlas UTR 492595 492653 . - . ID=BSGatlas-3'UTR-168;Parent=BSGatlas-transcript-489,BSGatlas-transcript-490,BSGatlas-transcript-491;comment="3'UTR" basu168 BSGatlas terminator 492595 492641 . - . ID=BSGatlas-terminator-261;Parent=BSGatlas-transcript-489,BSGatlas-transcript-490,BSGatlas-transcript-491;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -17.7[kcal/mol]" basu168 BSGatlas transcript 492654 494928 . - . ID=BSGatlas-transcript-494;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-534,BSGatlas-gene-533;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-364 basu168 BSGatlas exon 492654 494928 . - . ID=BSGatlas-transcript-494_exon;Parent=BSGatlas-transcript-494 basu168 BSGatlas transcript 492654 493477 . - . ID=BSGatlas-transcript-493;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-534,BSGatlas-gene-533;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-361 basu168 BSGatlas exon 492654 493477 . - . ID=BSGatlas-transcript-493_exon;Parent=BSGatlas-transcript-493 basu168 BSGatlas gene 492654 492911 . - . ID=BSGatlas-gene-533;color=#3474B3;Name=ydaS;locus_tag=BSU04370,BSU_04370;Parent=BSGatlas-operon-226 basu168 BSGatlas transcript 492654 492911 . - . ID=BSGatlas-transcript-492;color=#B37924;Parent=BSGatlas-operon-226,BSGatlas-gene-533;comment="Based on: SubtiWiki" basu168 BSGatlas CDS 492654 492911 . - 0 ID=BSGatlas-gene-533_transcribed;color=#3474B3;Name=ydaS;Parent=BSGatlas-transcript-489,BSGatlas-transcript-490,BSGatlas-transcript-491,BSGatlas-transcript-492,BSGatlas-transcript-493,BSGatlas-transcript-494;comment="conserved protein of unknown function";synonyms="ydaS";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0000303 response to superoxide,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-533 basu168 BSGatlas exon 492654 492911 . - . ID=BSGatlas-transcript-492_exon;Parent=BSGatlas-transcript-492 basu168 BSGatlas terminator 492706 492750 . - . ID=BSGatlas-terminator-262;Parent=BSGatlas-transcript-492,BSGatlas-transcript-493,BSGatlas-transcript-494;comment="Based on: Nicolas et al. downshift, Energy: -13.4[kcal/mol]" basu168 BSGatlas UTR 492912 492988 . - . ID=BSGatlas-internal_UTR-169;Parent=BSGatlas-transcript-490,BSGatlas-transcript-491,BSGatlas-transcript-493,BSGatlas-transcript-494;comment="internal_UTR" basu168 BSGatlas gene 492989 493441 . - . ID=BSGatlas-gene-534;color=#3474B3;Name=ydaT;locus_tag=BSU04380,BSU_04380;Parent=BSGatlas-operon-226 basu168 BSGatlas CDS 492989 493441 . - 0 ID=BSGatlas-gene-534_transcribed;color=#3474B3;Name=ydaT;Parent=BSGatlas-transcript-490,BSGatlas-transcript-491,BSGatlas-transcript-493,BSGatlas-transcript-494;comment="conserved protein of unknown function";synonyms="ydaT";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0000303 response to superoxide";derives_from=BSGatlas-gene-534 basu168 BSGatlas UTR 493442 494928 . - . ID=BSGatlas-5'UTR-297;Parent=BSGatlas-transcript-491,BSGatlas-transcript-494;comment="5'UTR" basu168 BSGatlas UTR 493442 493477 . - . ID=BSGatlas-5'UTR-296;Parent=BSGatlas-transcript-490,BSGatlas-transcript-493;comment="5'UTR" basu168 BSGatlas TSS 493477 493477 . - . ID=BSGatlas-TSS-361;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 493510 494424 . + . ID=BSGatlas-operon-227;color=#FF00CC basu168 BSGatlas transcript 493510 494424 . + . ID=BSGatlas-transcript-495;color=#FF9900;Parent=BSGatlas-operon-227,BSGatlas-gene-535;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-362 basu168 BSGatlas exon 493510 494424 . + . ID=BSGatlas-transcript-495_exon;Parent=BSGatlas-transcript-495 basu168 BSGatlas UTR 493510 493558 . + . ID=BSGatlas-5'UTR-298;Parent=BSGatlas-transcript-495;comment="5'UTR" basu168 BSGatlas TSS 493510 493510 . + . ID=BSGatlas-TSS-362;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 493559 494377 . + . ID=BSGatlas-gene-535;color=#1E90FF;Name=ydbA;locus_tag=BSU04390,BSU_04390;Parent=BSGatlas-operon-227 basu168 BSGatlas CDS 493559 494377 . + 0 ID=BSGatlas-gene-535_transcribed;color=#1E90FF;Name=ydbA;Parent=BSGatlas-transcript-495;comment="conserved protein of unknown function";synonyms="ydbA";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-535 basu168 BSGatlas UTR 494378 494424 . + . ID=BSGatlas-3'UTR-169;Parent=BSGatlas-transcript-495;comment="3'UTR" basu168 BSGatlas terminator 494379 494424 . + . ID=BSGatlas-terminator-263;Parent=BSGatlas-transcript-495;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -11.5[kcal/mol]" basu168 BSGatlas operon 494479 494955 . + . ID=BSGatlas-operon-228;color=#FF00CC basu168 BSGatlas transcript 494479 494955 . + . ID=BSGatlas-transcript-496;color=#FF9900;Parent=BSGatlas-operon-228,BSGatlas-gene-536;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-363 basu168 BSGatlas exon 494479 494955 . + . ID=BSGatlas-transcript-496_exon;Parent=BSGatlas-transcript-496 basu168 BSGatlas UTR 494479 494505 . + . ID=BSGatlas-5'UTR-299;Parent=BSGatlas-transcript-496;comment="5'UTR" basu168 BSGatlas TSS 494479 494479 . + . ID=BSGatlas-TSS-363;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 1378051,17962296,7651322,8012595" basu168 BSGatlas operon 494488 497716 . - . ID=BSGatlas-operon-229;color=#B32496 basu168 BSGatlas transcript 494488 497716 . - . ID=BSGatlas-transcript-498;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-540,BSGatlas-gene-539;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-368 basu168 BSGatlas exon 494488 497716 . - . ID=BSGatlas-transcript-498_exon;Parent=BSGatlas-transcript-498 basu168 BSGatlas transcript 494488 496586 . - . ID=BSGatlas-transcript-497;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-539;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-366 basu168 BSGatlas exon 494488 496586 . - . ID=BSGatlas-transcript-497_exon;Parent=BSGatlas-transcript-497 basu168 BSGatlas UTR 494488 495739 . - . ID=BSGatlas-3'UTR-170;Parent=BSGatlas-transcript-497,BSGatlas-transcript-498;comment="3'UTR" basu168 BSGatlas terminator 494488 494532 . - . ID=BSGatlas-terminator-264;Parent=BSGatlas-transcript-497,BSGatlas-transcript-498;comment="Based on: Nicolas et al. downshift, Energy: -14.2[kcal/mol]" basu168 BSGatlas gene 494506 494877 . + . ID=BSGatlas-gene-536;color=#1E90FF;Name=gsiB;locus_tag=BSU04400,BSU_04400;Parent=BSGatlas-operon-228 basu168 BSGatlas CDS 494506 494877 . + 0 ID=BSGatlas-gene-536_transcribed;color=#1E90FF;Name=gsiB;Parent=BSGatlas-transcript-496;comment="general stress protein glucose starvationinduced";synonyms="gsiB";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0006950 response to stress";derives_from=BSGatlas-gene-536 basu168 BSGatlas UTR 494878 494955 . + . ID=BSGatlas-3'UTR-171;Parent=BSGatlas-transcript-496;comment="3'UTR" basu168 BSGatlas terminator 494910 494955 . + . ID=BSGatlas-terminator-265;Parent=BSGatlas-transcript-496;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -20.7[kcal/mol]" basu168 BSGatlas TSS 494928 494928 . - . ID=BSGatlas-TSS-364;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 494982 495703 . + . ID=BSGatlas-operon-230;color=#FF00CC basu168 BSGatlas transcript 494982 495703 . + . ID=BSGatlas-transcript-499;color=#FF9900;Parent=BSGatlas-operon-230,BSGatlas-gene-537,BSGatlas-gene-538;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-365 basu168 BSGatlas exon 494982 495703 . + . ID=BSGatlas-transcript-499_exon;Parent=BSGatlas-transcript-499 basu168 BSGatlas UTR 494982 495008 . + . ID=BSGatlas-5'UTR-300;Parent=BSGatlas-transcript-499;comment="5'UTR" basu168 BSGatlas TSS 494982 494982 . + . ID=BSGatlas-TSS-365;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 495009 495350 . + . ID=BSGatlas-gene-537;color=#1E90FF;Name=ydbB;locus_tag=BSU04410,BSU_04410;Parent=BSGatlas-operon-230 basu168 BSGatlas CDS 495009 495350 . + 0 ID=BSGatlas-gene-537_transcribed;color=#1E90FF;Name=ydbB;Parent=BSGatlas-transcript-499;comment="putative enzyme; cupin family";synonyms="ydbB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0030145 manganese ion binding";derives_from=BSGatlas-gene-537 basu168 BSGatlas gene 495344 495703 . + . ID=BSGatlas-gene-538;color=#1E90FF;Name=ydbC;locus_tag=BSU04420,BSU_04420;Parent=BSGatlas-operon-230 basu168 BSGatlas CDS 495344 495703 . + 0 ID=BSGatlas-gene-538_transcribed;color=#1E90FF;Name=ydbC;Parent=BSGatlas-transcript-499;comment="conserved protein of unknown function";synonyms="ydbC";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-538 basu168 BSGatlas transcript 495373 497716 . - . ID=BSGatlas-transcript-501;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-540,BSGatlas-gene-539;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-368 basu168 BSGatlas exon 495373 497716 . - . ID=BSGatlas-transcript-501_exon;Parent=BSGatlas-transcript-501 basu168 BSGatlas transcript 495373 496586 . - . ID=BSGatlas-transcript-500;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-539;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-366 basu168 BSGatlas exon 495373 496586 . - . ID=BSGatlas-transcript-500_exon;Parent=BSGatlas-transcript-500 basu168 BSGatlas UTR 495373 495739 . - . ID=BSGatlas-3'UTR-172;Parent=BSGatlas-transcript-500,BSGatlas-transcript-501;comment="3'UTR" basu168 BSGatlas terminator 495373 495439 . - . ID=BSGatlas-terminator-266;Parent=BSGatlas-transcript-500,BSGatlas-transcript-501;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas terminator 495622 495710 . + . ID=BSGatlas-terminator-267;Parent=BSGatlas-transcript-499;comment="Based on: Nicolas et al. downshift, Energy: -16.6[kcal/mol]" basu168 BSGatlas transcript 495694 497716 . - . ID=BSGatlas-transcript-503;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-540,BSGatlas-gene-539;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-368 basu168 BSGatlas exon 495694 497716 . - . ID=BSGatlas-transcript-503_exon;Parent=BSGatlas-transcript-503 basu168 BSGatlas transcript 495694 496586 . - . ID=BSGatlas-transcript-502;color=#B37924;Parent=BSGatlas-operon-229,BSGatlas-gene-539;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-366 basu168 BSGatlas exon 495694 496586 . - . ID=BSGatlas-transcript-502_exon;Parent=BSGatlas-transcript-502 basu168 BSGatlas UTR 495694 495739 . - . ID=BSGatlas-3'UTR-173;Parent=BSGatlas-transcript-502,BSGatlas-transcript-503;comment="3'UTR" basu168 BSGatlas terminator 495694 495736 . - . ID=BSGatlas-terminator-268;Parent=BSGatlas-transcript-502,BSGatlas-transcript-503;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -16.7[kcal/mol]" basu168 BSGatlas gene 495740 496561 . - . ID=BSGatlas-gene-539;color=#3474B3;Name=ydbD;locus_tag=BSU04430,BSU_04430;Parent=BSGatlas-operon-229 basu168 BSGatlas CDS 495740 496561 . - 0 ID=BSGatlas-gene-539_transcribed;color=#3474B3;Name=ydbD;Parent=BSGatlas-transcript-497,BSGatlas-transcript-498,BSGatlas-transcript-500,BSGatlas-transcript-501,BSGatlas-transcript-502,BSGatlas-transcript-503;comment="putative manganese-containing catalase";synonyms="ydbD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.9 Resistance against oxidative and electrophile stress/ based on similarity";ec="1.11.1.6,EC-1.11.1.21;EC-1.11.1.6";go="GO:0004096 catalase activity,GO:0004601 peroxidase activity,GO:0006950 response to stress,GO:0016491 oxidoreductase activity,GO:0042542 response to hydrogen peroxide,GO:0046872 metal ion binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-539 basu168 BSGatlas UTR 496562 496645 . - . ID=BSGatlas-internal_UTR-170;Parent=BSGatlas-transcript-498,BSGatlas-transcript-501,BSGatlas-transcript-503;comment="internal_UTR" basu168 BSGatlas UTR 496562 496586 . - . ID=BSGatlas-5'UTR-301;Parent=BSGatlas-transcript-497,BSGatlas-transcript-500,BSGatlas-transcript-502;comment="5'UTR" basu168 BSGatlas TSS 496586 496586 . - . ID=BSGatlas-TSS-366;color=#B32424;comment="Simga: B, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 11532142" basu168 BSGatlas gene 496646 497698 . - . ID=BSGatlas-gene-540;color=#3474B3;Name=dctB;locus_tag=BSU04440,BSU_04440;Parent=BSGatlas-operon-229 basu168 BSGatlas CDS 496646 497698 . - 0 ID=BSGatlas-gene-540_transcribed;color=#3474B3;Name=dctB;Parent=BSGatlas-transcript-498,BSGatlas-transcript-501,BSGatlas-transcript-503;comment="membrane bound C4-dicarboxylate binding sensorprotein";synonyms="dctB,ydbE";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.1 Utilization of organic acids";go="GO:0005576 extracellular region,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0030288 outer membrane-bounded periplasmic space";derives_from=BSGatlas-gene-540 basu168 BSGatlas operon 496981 501472 . + . ID=BSGatlas-operon-231;color=#FF00CC basu168 BSGatlas transcript 496981 501472 . + . ID=BSGatlas-transcript-504;color=#FF9900;Parent=BSGatlas-operon-231,BSGatlas-gene-541,BSGatlas-gene-542,BSGatlas-gene-543;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-367 basu168 BSGatlas exon 496981 501472 . + . ID=BSGatlas-transcript-504_exon;Parent=BSGatlas-transcript-504 basu168 BSGatlas UTR 496981 497767 . + . ID=BSGatlas-5'UTR-302;Parent=BSGatlas-transcript-504;comment="5'UTR" basu168 BSGatlas TSS 496981 496981 . + . ID=BSGatlas-TSS-367;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 497699 497716 . - . ID=BSGatlas-5'UTR-303;Parent=BSGatlas-transcript-498,BSGatlas-transcript-501,BSGatlas-transcript-503;comment="5'UTR" basu168 BSGatlas TSS 497716 497716 . - . ID=BSGatlas-TSS-368;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 497768 499375 . + . ID=BSGatlas-gene-541;color=#1E90FF;Name=dctS;locus_tag=BSU04450,BSU_04450;Parent=BSGatlas-operon-231 basu168 BSGatlas CDS 497768 499375 . + 0 ID=BSGatlas-gene-541_transcribed;color=#1E90FF;Name=dctS;Parent=BSGatlas-transcript-504;comment="two-component sensor histidine kinase";synonyms="dctS,ydbF";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.1 Utilization of organic acids,SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000155 phosphorelay sensor kinase activity,GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0004871 NA,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016772 transferase activity, transferring phosphorus-containing groups,GO:0018106 peptidyl-histidine phosphorylation,GO:0023014 signal transduction by protein phosphorylation,GO:0031975 envelope";derives_from=BSGatlas-gene-541 basu168 BSGatlas gene 499365 500045 . + . ID=BSGatlas-gene-542;color=#1E90FF;Name=dctR;locus_tag=BSU04460,BSU_04460;Parent=BSGatlas-operon-231 basu168 BSGatlas CDS 499365 500045 . + 0 ID=BSGatlas-gene-542_transcribed;color=#1E90FF;Name=dctR;Parent=BSGatlas-transcript-504;comment="two-component response regulator";synonyms="dctR,ydbG";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.1 Utilization of organic acids,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0001071 NA,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0009605 response to external stimulus,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-542 basu168 BSGatlas UTR 500046 500165 . + . ID=BSGatlas-internal_UTR-171;Parent=BSGatlas-transcript-504;comment="internal_UTR" basu168 BSGatlas transcript 500124 501472 . + . ID=BSGatlas-transcript-505;color=#FF9900;Parent=BSGatlas-operon-231,BSGatlas-gene-543;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-369 basu168 BSGatlas exon 500124 501472 . + . ID=BSGatlas-transcript-505_exon;Parent=BSGatlas-transcript-505 basu168 BSGatlas UTR 500124 500165 . + . ID=BSGatlas-5'UTR-304;Parent=BSGatlas-transcript-505;comment="5'UTR" basu168 BSGatlas TSS 500124 500124 . + . ID=BSGatlas-TSS-369;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 10708364" basu168 BSGatlas gene 500166 501431 . + . ID=BSGatlas-gene-543;color=#1E90FF;Name=dctP;locus_tag=BSU04470,BSU_04470;Parent=BSGatlas-operon-231 basu168 BSGatlas CDS 500166 501431 . + 0 ID=BSGatlas-gene-543_transcribed;color=#1E90FF;Name=dctP;Parent=BSGatlas-transcript-504,BSGatlas-transcript-505;comment="C4-dicarboxylate transport protein";synonyms="dctA,dctP,ydbH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.4 Transporter for organic acids,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.1 Utilization of organic acids,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006835 dicarboxylic acid transport,GO:0008643 carbohydrate transport,GO:0015293 symporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0017153 sodium:dicarboxylate symporter activity,GO:0035725 sodium ion transmembrane transport,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-543 basu168 BSGatlas UTR 501432 501472 . + . ID=BSGatlas-3'UTR-174;Parent=BSGatlas-transcript-504,BSGatlas-transcript-505;comment="3'UTR" basu168 BSGatlas terminator 501435 501472 . + . ID=BSGatlas-terminator-269;Parent=BSGatlas-transcript-504,BSGatlas-transcript-505;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -14.7[kcal/mol]" basu168 BSGatlas terminator 501456 501500 . - . ID=BSGatlas-terminator-270;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas operon 501517 502631 . + . ID=BSGatlas-operon-232;color=#FF00CC basu168 BSGatlas transcript 501517 502631 . + . ID=BSGatlas-transcript-506;color=#FF9900;Parent=BSGatlas-operon-232,BSGatlas-gene-544;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-370 basu168 BSGatlas exon 501517 502631 . + . ID=BSGatlas-transcript-506_exon;Parent=BSGatlas-transcript-506 basu168 BSGatlas UTR 501517 501578 . + . ID=BSGatlas-5'UTR-305;Parent=BSGatlas-transcript-506;comment="5'UTR" basu168 BSGatlas TSS 501517 501517 . + . ID=BSGatlas-TSS-370;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 501579 502631 . + . ID=BSGatlas-gene-544;color=#1E90FF;Name=ydbI;locus_tag=BSU04480,BSU_04480;Parent=BSGatlas-operon-232 basu168 BSGatlas CDS 501579 502631 . + 0 ID=BSGatlas-gene-544_transcribed;color=#1E90FF;Name=ydbI;Parent=BSGatlas-transcript-506;comment="putative integral inner membrane protein";synonyms="ydbI";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-544 basu168 BSGatlas operon 502668 502883 . + . ID=BSGatlas-operon-233;color=#FF00CC basu168 BSGatlas gene 502668 502883 . + . ID=BSGatlas-gene-545;color=#999999;Name=novel;Parent=BSGatlas-operon-233 basu168 BSGatlas transcript 502668 502883 . + . ID=BSGatlas-transcript-507;color=#FF9900;Parent=BSGatlas-operon-233,BSGatlas-gene-545;comment="Based on: BSGatlas" basu168 BSGatlas riboswitch 502668 502883 . + . ID=BSGatlas-gene-545_transcribed;color=#999999;Name=novel;Parent=BSGatlas-transcript-507;derives_from=BSGatlas-gene-545 basu168 BSGatlas exon 502668 502883 . + . ID=BSGatlas-transcript-507_exon;Parent=BSGatlas-transcript-507 basu168 BSGatlas terminator 502810 502854 . + . ID=BSGatlas-terminator-271;Parent=BSGatlas-transcript-507;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -12.4[kcal/mol]" basu168 BSGatlas gene 502908 503834 . + . ID=BSGatlas-gene-546;color=#1E90FF;Name=ydbJ;locus_tag=BSU04490,BSU_04490 basu168 BSGatlas CDS 502908 503834 . + 0 ID=BSGatlas-gene-546_transcribed;color=#1E90FF;Name=ydbJ;comment="putative ABC transporter (ATP-binding subunit)";synonyms="ydbJ";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.6 Exporters of unknown function,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0006810 transport,GO:0008152 metabolic process,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-546 basu168 BSGatlas gene 503854 504594 . + . ID=BSGatlas-gene-547;color=#1E90FF;Name=ydbK;locus_tag=BSU04500,BSU_04500 basu168 BSGatlas CDS 503854 504594 . + 0 ID=BSGatlas-gene-547_transcribed;color=#1E90FF;Name=ydbK;comment="putative efflux ABC-transporter (permeasesubunit)";synonyms="ydbK";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.1 ABC transporters,SW 1.2.1.2 Exporters,SW 1.2.1.2.6 Exporters of unknown function,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-547 basu168 BSGatlas operon 504658 505024 . + . ID=BSGatlas-operon-234;color=#FF00CC basu168 BSGatlas transcript 504658 505024 . + . ID=BSGatlas-transcript-508;color=#FF9900;Parent=BSGatlas-operon-234,BSGatlas-gene-548;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-371 basu168 BSGatlas exon 504658 505024 . + . ID=BSGatlas-transcript-508_exon;Parent=BSGatlas-transcript-508 basu168 BSGatlas UTR 504658 504688 . + . ID=BSGatlas-5'UTR-306;Parent=BSGatlas-transcript-508;comment="5'UTR" basu168 BSGatlas TSS 504658 504658 . + . ID=BSGatlas-TSS-371;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 504689 505024 . + . ID=BSGatlas-gene-548;color=#1E90FF;Name=ydbL;locus_tag=BSU04510,BSU_04510;Parent=BSGatlas-operon-234 basu168 BSGatlas CDS 504689 505024 . + 0 ID=BSGatlas-gene-548_transcribed;color=#1E90FF;Name=ydbL;Parent=BSGatlas-transcript-508;comment="putative glyco-prenyl flippase subunit";synonyms="ydbL";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-548 basu168 BSGatlas terminator 504977 505021 . + . ID=BSGatlas-terminator-272;Parent=BSGatlas-transcript-508;comment="Based on: Nicolas et al. downshift, Energy: -18.4[kcal/mol]" basu168 BSGatlas operon 505114 506333 . + . ID=BSGatlas-operon-235;color=#FF00CC basu168 BSGatlas transcript 505114 506333 . + . ID=BSGatlas-transcript-509;color=#FF9900;Parent=BSGatlas-operon-235,BSGatlas-gene-549;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-372 basu168 BSGatlas exon 505114 506333 . + . ID=BSGatlas-transcript-509_exon;Parent=BSGatlas-transcript-509 basu168 BSGatlas UTR 505114 505151 . + . ID=BSGatlas-5'UTR-307;Parent=BSGatlas-transcript-509;comment="5'UTR" basu168 BSGatlas TSS 505114 505114 . + . ID=BSGatlas-TSS-372;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 505152 506297 . + . ID=BSGatlas-gene-549;color=#1E90FF;Name=ydbM;locus_tag=BSU04520,BSU_04520;Parent=BSGatlas-operon-235 basu168 BSGatlas CDS 505152 506297 . + 0 ID=BSGatlas-gene-549_transcribed;color=#1E90FF;Name=ydbM;Parent=BSGatlas-transcript-509;comment="putative acyl-CoA dehydrogenase";synonyms="ydbM";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.3.99.-,EC-1.3.8";go="GO:0003995 acyl-CoA dehydrogenase activity,GO:0008152 metabolic process,GO:0016491 oxidoreductase activity,GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors,GO:0050660 flavin adenine dinucleotide binding,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-549 basu168 BSGatlas terminator 506287 506333 . + . ID=BSGatlas-terminator-273;Parent=BSGatlas-transcript-509;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -9.5[kcal/mol]" basu168 BSGatlas operon 506289 506672 . - . ID=BSGatlas-operon-236;color=#B32496 basu168 BSGatlas transcript 506289 506672 . - . ID=BSGatlas-transcript-511;color=#B37924;Parent=BSGatlas-operon-236,BSGatlas-gene-551,BSGatlas-gene-550;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-373 basu168 BSGatlas exon 506289 506672 . - . ID=BSGatlas-transcript-511_exon;Parent=BSGatlas-transcript-511 basu168 BSGatlas transcript 506289 506501 . - . ID=BSGatlas-transcript-510;color=#B37924;Parent=BSGatlas-operon-236,BSGatlas-gene-550;comment="Based on: SubtiWiki" basu168 BSGatlas exon 506289 506501 . - . ID=BSGatlas-transcript-510_exon;Parent=BSGatlas-transcript-510 basu168 BSGatlas terminator 506289 506323 . - . ID=BSGatlas-terminator-274;Parent=BSGatlas-transcript-510,BSGatlas-transcript-511;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -10.1[kcal/mol]" basu168 BSGatlas UTR 506289 506321 . - . ID=BSGatlas-3'UTR-175;Parent=BSGatlas-transcript-510,BSGatlas-transcript-511;comment="3'UTR" basu168 BSGatlas UTR 506298 506333 . + . ID=BSGatlas-3'UTR-176;Parent=BSGatlas-transcript-509;comment="3'UTR" basu168 BSGatlas gene 506322 506501 . - . ID=BSGatlas-gene-550;color=#3474B3;Name=fbpB;locus_tag=BSU04530,BSU_04530;Parent=BSGatlas-operon-236 basu168 BSGatlas CDS 506322 506501 . - 0 ID=BSGatlas-gene-550_transcribed;color=#3474B3;Name=fbpB;Parent=BSGatlas-transcript-510,BSGatlas-transcript-511;comment="regulator of iron homeostasis";synonyms="fbpB,ydbN";subtiwiki_category="SW 1 Cellular processes,SW 1.3 Homeostasis,SW 1.3.3 Acquisition of iron,SW 1.3.3.3 Acquisition of iron / Other,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.1 Acquisition of iron / Other,SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.2 RNA chaperones,SW 6 Groups of genes,SW 6.8 Short peptides";derives_from=BSGatlas-gene-550 basu168 BSGatlas gene 506455 506619 . - . ID=BSGatlas-gene-551;color=#3474B3;Name=fbpA;locus_tag=BSU_04536,G8J2-18;Parent=BSGatlas-operon-236 basu168 BSGatlas CDS 506455 506619 . - 0 ID=BSGatlas-gene-551_transcribed;color=#3474B3;Name=fbpA;Parent=BSGatlas-transcript-511;comment="regulator of iron homeostasis";derives_from=BSGatlas-gene-551 basu168 BSGatlas UTR 506620 506672 . - . ID=BSGatlas-5'UTR-308;Parent=BSGatlas-transcript-511;comment="5'UTR" basu168 BSGatlas TSS 506672 506672 . - . ID=BSGatlas-TSS-373;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 506836 507841 . + . ID=BSGatlas-operon-237;color=#FF00CC basu168 BSGatlas transcript 506836 507841 . + . ID=BSGatlas-transcript-512;color=#FF9900;Parent=BSGatlas-operon-237,BSGatlas-gene-552;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-374 basu168 BSGatlas exon 506836 507841 . + . ID=BSGatlas-transcript-512_exon;Parent=BSGatlas-transcript-512 basu168 BSGatlas UTR 506836 506865 . + . ID=BSGatlas-5'UTR-309;Parent=BSGatlas-transcript-512;comment="5'UTR" basu168 BSGatlas TSS 506836 506836 . + . ID=BSGatlas-TSS-374;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 506866 507841 . + . ID=BSGatlas-transcript-513;color=#FF9900;Parent=BSGatlas-operon-237,BSGatlas-gene-552;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-375 basu168 BSGatlas exon 506866 507841 . + . ID=BSGatlas-transcript-513_exon;Parent=BSGatlas-transcript-513 basu168 BSGatlas gene 506866 507738 . + . ID=BSGatlas-gene-552;color=#1E90FF;Name=ydbO;locus_tag=BSU04540,BSU_04540;Parent=BSGatlas-operon-237 basu168 BSGatlas CDS 506866 507738 . + 0 ID=BSGatlas-gene-552_transcribed;color=#1E90FF;Name=ydbO;Parent=BSGatlas-transcript-512,BSGatlas-transcript-513;comment="putative cation efflux system";synonyms="ydbO";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006812 cation transport,GO:0008324 cation transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-552 basu168 BSGatlas TSS 507127 507127 . + . ID=BSGatlas-TSS-375;color=#FF0000;comment="Simga: WXY, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 507667 508109 . - . ID=BSGatlas-operon-238;color=#B32496 basu168 BSGatlas transcript 507667 508109 . - . ID=BSGatlas-transcript-514;color=#B37924;Parent=BSGatlas-operon-238,BSGatlas-gene-553;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-377 basu168 BSGatlas exon 507667 508109 . - . ID=BSGatlas-transcript-514_exon;Parent=BSGatlas-transcript-514 basu168 BSGatlas UTR 507667 507752 . - . ID=BSGatlas-3'UTR-177;Parent=BSGatlas-transcript-514;comment="3'UTR" basu168 BSGatlas terminator 507667 507714 . - . ID=BSGatlas-terminator-275;Parent=BSGatlas-transcript-514;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -16.5[kcal/mol]" basu168 BSGatlas UTR 507739 507841 . + . ID=BSGatlas-3'UTR-178;Parent=BSGatlas-transcript-512,BSGatlas-transcript-513;comment="3'UTR" basu168 BSGatlas gene 507753 508073 . - . ID=BSGatlas-gene-553;color=#3474B3;Name=ydbP;locus_tag=BSU04550,BSU_04550;Parent=BSGatlas-operon-238 basu168 BSGatlas CDS 507753 508073 . - 0 ID=BSGatlas-gene-553_transcribed;color=#3474B3;Name=ydbP;Parent=BSGatlas-transcript-514;comment="putative thioredoxin or thiol-disulfideisomerase";synonyms="ydbP";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.4 Electron transport/ other/ based on similarity";go="GO:0006662 glycerol ether metabolic process,GO:0015035 protein disulfide oxidoreductase activity,GO:0045454 cell redox homeostasis,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-553 basu168 BSGatlas terminator 507774 507841 . + . ID=BSGatlas-terminator-276;Parent=BSGatlas-transcript-512,BSGatlas-transcript-513;comment="Based on: BsubCyc,DBTBS, Energy: -20.1[kcal/mol]" basu168 BSGatlas UTR 508074 508109 . - . ID=BSGatlas-5'UTR-310;Parent=BSGatlas-transcript-514;comment="5'UTR" basu168 BSGatlas operon 508090 510757 . + . ID=BSGatlas-operon-239;color=#FF00CC basu168 BSGatlas transcript 508090 510757 . + . ID=BSGatlas-transcript-516;color=#FF9900;Parent=BSGatlas-operon-239,BSGatlas-gene-554,BSGatlas-gene-555;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-376 basu168 BSGatlas exon 508090 510757 . + . ID=BSGatlas-transcript-516_exon;Parent=BSGatlas-transcript-516 basu168 BSGatlas transcript 508090 509312 . + . ID=BSGatlas-transcript-515;color=#FF9900;Parent=BSGatlas-operon-239,BSGatlas-gene-554;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-376 basu168 BSGatlas exon 508090 509312 . + . ID=BSGatlas-transcript-515_exon;Parent=BSGatlas-transcript-515 basu168 BSGatlas UTR 508090 508247 . + . ID=BSGatlas-5'UTR-311;Parent=BSGatlas-transcript-515,BSGatlas-transcript-516;comment="5'UTR" basu168 BSGatlas TSS 508090 508090 . + . ID=BSGatlas-TSS-376;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 508109 508109 . - . ID=BSGatlas-TSS-377;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 508248 509312 . + . ID=BSGatlas-gene-554;color=#1E90FF;Name=ddlA;locus_tag=BSU04560,BSU_04560;Parent=BSGatlas-operon-239 basu168 BSGatlas CDS 508248 509312 . + 0 ID=BSGatlas-gene-554_transcribed;color=#1E90FF;Name=ddlA;Parent=BSGatlas-transcript-515,BSGatlas-transcript-516;comment="D-alanyl-D-alanine ligase A";synonyms="ddl,ddlA";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.3.2.4,EC-6.3.2.4";go="GO:0000166 nucleotide binding,GO:0000287 magnesium ion binding,GO:0003824 catalytic activity,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0008360 regulation of cell shape,GO:0008716 D-alanine-D-alanine ligase activity,GO:0009252 peptidoglycan biosynthetic process,GO:0016874 ligase activity,GO:0030145 manganese ion binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-554 basu168 BSGatlas terminator 509278 509322 . + . ID=BSGatlas-terminator-277;Parent=BSGatlas-transcript-515;comment="Based on: Nicolas et al. downshift, Energy: -9.6[kcal/mol]" basu168 BSGatlas UTR 509313 509383 . + . ID=BSGatlas-internal_UTR-172;Parent=BSGatlas-transcript-516;comment="internal_UTR" basu168 BSGatlas gene 509384 510757 . + . ID=BSGatlas-gene-555;color=#1E90FF;Name=murF;locus_tag=BSU04570,BSU_04570;Parent=BSGatlas-operon-239 basu168 BSGatlas CDS 509384 510757 . + 0 ID=BSGatlas-gene-555_transcribed;color=#1E90FF;Name=murF;Parent=BSGatlas-transcript-516;comment="UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase";synonyms="murF,ydbQ";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.1 Essential genes";ec="6.3.2.10,EC-6.3.2.10";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0007049 cell cycle,GO:0008360 regulation of cell shape,GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity,GO:0009058 biosynthetic process,GO:0009252 peptidoglycan biosynthetic process,GO:0016874 ligase activity,GO:0047480 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity,GO:0051301 cell division";derives_from=BSGatlas-gene-555 basu168 BSGatlas operon 510818 512656 . + . ID=BSGatlas-operon-240;color=#FF00CC basu168 BSGatlas transcript 510818 512656 . + . ID=BSGatlas-transcript-517;color=#FF9900;Parent=BSGatlas-operon-240,BSGatlas-gene-556;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-378 basu168 BSGatlas exon 510818 512656 . + . ID=BSGatlas-transcript-517_exon;Parent=BSGatlas-transcript-517 basu168 BSGatlas UTR 510818 511156 . + . ID=BSGatlas-5'UTR-312;Parent=BSGatlas-transcript-517;comment="5'UTR" basu168 BSGatlas TSS 510818 510818 . + . ID=BSGatlas-TSS-378;color=#FF0000;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 510862 512656 . + . ID=BSGatlas-transcript-518;color=#FF9900;Parent=BSGatlas-operon-240,BSGatlas-gene-556;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-379 basu168 BSGatlas exon 510862 512656 . + . ID=BSGatlas-transcript-518_exon;Parent=BSGatlas-transcript-518 basu168 BSGatlas UTR 510862 511156 . + . ID=BSGatlas-5'UTR-313;Parent=BSGatlas-transcript-518;comment="5'UTR" basu168 BSGatlas TSS 510862 510862 . + . ID=BSGatlas-TSS-379;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 511038 512656 . + . ID=BSGatlas-transcript-519;color=#FF9900;Parent=BSGatlas-operon-240,BSGatlas-gene-556;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-380 basu168 BSGatlas exon 511038 512656 . + . ID=BSGatlas-transcript-519_exon;Parent=BSGatlas-transcript-519 basu168 BSGatlas UTR 511038 511156 . + . ID=BSGatlas-5'UTR-314;Parent=BSGatlas-transcript-519;comment="5'UTR" basu168 BSGatlas TSS 511038 511038 . + . ID=BSGatlas-TSS-380;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 511157 512641 . + . ID=BSGatlas-gene-556;color=#1E90FF;Name=cshA;locus_tag=BSU04580,BSU_04580;Parent=BSGatlas-operon-240 basu168 BSGatlas CDS 511157 512641 . + 0 ID=BSGatlas-gene-556_transcribed;color=#1E90FF;Name=cshA;Parent=BSGatlas-transcript-517,BSGatlas-transcript-518,BSGatlas-transcript-519;comment="ATP-dependent RNA helicase; cold shock";synonyms="cshA,ydbR";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.3 DEAD-box RNA helicases,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.6 Ribosome assembly,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.5 Cold stress proteins,SW 6 Groups of genes,SW 6.2 Membrane proteins";ec="3.6.1.-";go="GO:0000166 nucleotide binding,GO:0003676 nucleic acid binding,GO:0003723 RNA binding,GO:0004004 ATP-dependent RNA helicase activity,GO:0004386 helicase activity,GO:0005515 protein binding,GO:0005524 ATP binding,GO:0005737 cytoplasm,GO:0006950 response to stress,GO:0008026 ATP-dependent helicase activity,GO:0009295 nucleoid,GO:0009409 response to cold,GO:0010501 RNA secondary structure unwinding,GO:0016787 hydrolase activity,GO:0043590 bacterial nucleoid";derives_from=BSGatlas-gene-556 basu168 BSGatlas terminator 512612 512656 . + . ID=BSGatlas-terminator-278;Parent=BSGatlas-transcript-517,BSGatlas-transcript-518,BSGatlas-transcript-519;comment="Based on: Nicolas et al. downshift, Energy: -13.1[kcal/mol]" basu168 BSGatlas UTR 512642 512656 . + . ID=BSGatlas-3'UTR-179;Parent=BSGatlas-transcript-517,BSGatlas-transcript-518,BSGatlas-transcript-519;comment="3'UTR" basu168 BSGatlas operon 512787 514764 . + . ID=BSGatlas-operon-241;color=#FF00CC basu168 BSGatlas transcript 512787 514764 . + . ID=BSGatlas-transcript-520;color=#FF9900;Parent=BSGatlas-operon-241,BSGatlas-gene-557,BSGatlas-gene-558;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-381 basu168 BSGatlas exon 512787 514764 . + . ID=BSGatlas-transcript-520_exon;Parent=BSGatlas-transcript-520 basu168 BSGatlas UTR 512787 512813 . + . ID=BSGatlas-5'UTR-315;Parent=BSGatlas-transcript-520;comment="5'UTR" basu168 BSGatlas TSS 512787 512787 . + . ID=BSGatlas-TSS-381;color=#FF0000;comment="Simga: W, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start, PubMed: 12207695,17962296,9987136" basu168 BSGatlas gene 512814 513293 . + . ID=BSGatlas-gene-557;color=#1E90FF;Name=ydbS;locus_tag=BSU04590,BSU_04590;Parent=BSGatlas-operon-241 basu168 BSGatlas CDS 512814 513293 . + 0 ID=BSGatlas-gene-557_transcribed;color=#1E90FF;Name=ydbS;Parent=BSGatlas-transcript-520;comment="resistance to heterologous antibiotics";synonyms="ydbS";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-557 basu168 BSGatlas gene 513283 514764 . + . ID=BSGatlas-gene-558;color=#1E90FF;Name=ydbT;locus_tag=BSU04600,BSU_04600;Parent=BSGatlas-operon-241 basu168 BSGatlas CDS 513283 514764 . + 0 ID=BSGatlas-gene-558_transcribed;color=#1E90FF;Name=ydbT;Parent=BSGatlas-transcript-520;comment="resistance to heterologous antibiotics";synonyms="ydbT";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics,SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y),SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-558 basu168 BSGatlas terminator 514712 514756 . + . ID=BSGatlas-terminator-279;Parent=BSGatlas-transcript-520;comment="Based on: Nicolas et al. downshift, Energy: -17.1[kcal/mol]" basu168 BSGatlas operon 514766 515649 . - . ID=BSGatlas-operon-242;color=#B32496 basu168 BSGatlas transcript 514766 515649 . - . ID=BSGatlas-transcript-521;color=#B37924;Parent=BSGatlas-operon-242,BSGatlas-gene-560;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-383 basu168 BSGatlas exon 514766 515649 . - . ID=BSGatlas-transcript-521_exon;Parent=BSGatlas-transcript-521 basu168 BSGatlas UTR 514766 515015 . - . ID=BSGatlas-3'UTR-180;Parent=BSGatlas-transcript-521;comment="3'UTR" basu168 BSGatlas terminator 514766 514810 . - . ID=BSGatlas-terminator-280;Parent=BSGatlas-transcript-521;comment="Based on: Nicolas et al. downshift, Energy: -8.8[kcal/mol]" basu168 BSGatlas operon 514831 515045 . + . ID=BSGatlas-operon-243;color=#FF00CC basu168 BSGatlas transcript 514831 515045 . + . ID=BSGatlas-transcript-522;color=#FF9900;Parent=BSGatlas-operon-243,BSGatlas-gene-559;comment="Based on: BSGatlas" basu168 BSGatlas exon 514831 515045 . + . ID=BSGatlas-transcript-522_exon;Parent=BSGatlas-transcript-522 basu168 BSGatlas gene 514831 514898 . + . ID=BSGatlas-gene-559;color=#00FF00;Name=Bacillaceae-1;Parent=BSGatlas-operon-243 basu168 BSGatlas sRNA 514831 514898 . + . ID=BSGatlas-gene-559_transcribed;color=#00FF00;Name=Bacillaceae-1;Parent=BSGatlas-transcript-522;derives_from=BSGatlas-gene-559 basu168 BSGatlas UTR 514899 515045 . + . ID=BSGatlas-3'UTR-181;Parent=BSGatlas-transcript-522;comment="3'UTR" basu168 BSGatlas transcript 514951 515649 . - . ID=BSGatlas-transcript-523;color=#B37924;Parent=BSGatlas-operon-242,BSGatlas-gene-560;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-383 basu168 BSGatlas exon 514951 515649 . - . ID=BSGatlas-transcript-523_exon;Parent=BSGatlas-transcript-523 basu168 BSGatlas UTR 514951 515015 . - . ID=BSGatlas-3'UTR-182;Parent=BSGatlas-transcript-523;comment="3'UTR" basu168 BSGatlas terminator 514951 514995 . - . ID=BSGatlas-terminator-281;Parent=BSGatlas-transcript-523;comment="Based on: BsubCyc,DBTBS, Energy: -13.8[kcal/mol]" basu168 BSGatlas terminator 515003 515045 . + . ID=BSGatlas-terminator-282;Parent=BSGatlas-transcript-522;comment="Based on: BsubCyc,DBTBS, Energy: -19.1[kcal/mol]" basu168 BSGatlas gene 515016 515615 . - . ID=BSGatlas-gene-560;color=#3474B3;Name=ydcA;locus_tag=BSU04610,BSU_04610;Parent=BSGatlas-operon-242 basu168 BSGatlas CDS 515016 515615 . - 0 ID=BSGatlas-gene-560_transcribed;color=#3474B3;Name=ydcA;Parent=BSGatlas-transcript-521,BSGatlas-transcript-523;comment="putative rhomboid protease";synonyms="ydcA";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";ec="3.4.21.-";go="GO:0004252 serine-type endopeptidase activity,GO:0005886 plasma membrane,GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-560 basu168 BSGatlas operon 515108 517299 . + . ID=BSGatlas-operon-244;color=#FF00CC basu168 BSGatlas transcript 515108 517299 . + . ID=BSGatlas-transcript-524;color=#FF9900;Parent=BSGatlas-operon-244,BSGatlas-gene-561,BSGatlas-gene-562;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-382 basu168 BSGatlas exon 515108 517299 . + . ID=BSGatlas-transcript-524_exon;Parent=BSGatlas-transcript-524 basu168 BSGatlas UTR 515108 515709 . + . ID=BSGatlas-5'UTR-316;Parent=BSGatlas-transcript-524;comment="5'UTR" basu168 BSGatlas TSS 515108 515108 . + . ID=BSGatlas-TSS-382;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 515616 515649 . - . ID=BSGatlas-5'UTR-317;Parent=BSGatlas-transcript-521,BSGatlas-transcript-523;comment="5'UTR" basu168 BSGatlas TSS 515649 515649 . - . ID=BSGatlas-TSS-383;color=#B32424;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 12662922,17962296" basu168 BSGatlas gene 515710 516075 . + . ID=BSGatlas-gene-561;color=#1E90FF;Name=acpS;locus_tag=BSU04620,BSU_04620;Parent=BSGatlas-operon-244 basu168 BSGatlas CDS 515710 516075 . + 0 ID=BSGatlas-gene-561_transcribed;color=#1E90FF;Name=acpS;Parent=BSGatlas-transcript-524;comment="holo-acyl carrier protein synthase(phosphopantetheinyl transferase)";synonyms="acpS,ydcB";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.2 Biosynthesis of lipids,SW 2.4.2.1 Biosynthesis of fatty acids,SW 6 Groups of genes,SW 6.1 Essential genes";ec="2.7.8.7,EC-2.7.8.7";go="GO:0000287 magnesium ion binding,GO:0005737 cytoplasm,GO:0006629 lipid metabolic process,GO:0006631 fatty acid metabolic process,GO:0006633 fatty acid biosynthetic process,GO:0008897 holo-[acyl-carrier-protein] synthase activity,GO:0009059 macromolecule biosynthetic process,GO:0016740 transferase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-561 basu168 BSGatlas UTR 516076 516240 . + . ID=BSGatlas-internal_UTR-173;Parent=BSGatlas-transcript-524;comment="internal_UTR" basu168 BSGatlas transcript 516115 517299 . + . ID=BSGatlas-transcript-525;color=#FF9900;Parent=BSGatlas-operon-244,BSGatlas-gene-562;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-384 basu168 BSGatlas exon 516115 517299 . + . ID=BSGatlas-transcript-525_exon;Parent=BSGatlas-transcript-525 basu168 BSGatlas UTR 516115 516240 . + . ID=BSGatlas-5'UTR-318;Parent=BSGatlas-transcript-525;comment="5'UTR" basu168 BSGatlas TSS 516115 516115 . + . ID=BSGatlas-TSS-384;color=#FF0000;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 12480901,12662922,17962296" basu168 BSGatlas gene 516241 517257 . + . ID=BSGatlas-gene-562;color=#1E90FF;Name=ydcC;locus_tag=BSU04630,BSU_04630;Parent=BSGatlas-operon-244 basu168 BSGatlas CDS 516241 517257 . + 0 ID=BSGatlas-gene-562_transcribed;color=#1E90FF;Name=ydcC;Parent=BSGatlas-transcript-524,BSGatlas-transcript-525;comment="putative lipoprotein";synonyms="ydcC";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.6 Phosphorylation on a Thr residue";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-562 basu168 BSGatlas UTR 517258 517299 . + . ID=BSGatlas-3'UTR-183;Parent=BSGatlas-transcript-524,BSGatlas-transcript-525;comment="3'UTR" basu168 BSGatlas terminator 517261 517299 . + . ID=BSGatlas-terminator-283;Parent=BSGatlas-transcript-524,BSGatlas-transcript-525;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -11.5[kcal/mol]" basu168 BSGatlas operon 517330 519339 . + . ID=BSGatlas-operon-245;color=#FF00CC basu168 BSGatlas transcript 517330 519339 . + . ID=BSGatlas-transcript-527;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-563,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-385 basu168 BSGatlas exon 517330 519339 . + . ID=BSGatlas-transcript-527_exon;Parent=BSGatlas-transcript-527 basu168 BSGatlas transcript 517330 519293 . + . ID=BSGatlas-transcript-526;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-563,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-385 basu168 BSGatlas exon 517330 519293 . + . ID=BSGatlas-transcript-526_exon;Parent=BSGatlas-transcript-526 basu168 BSGatlas UTR 517330 517371 . + . ID=BSGatlas-5'UTR-319;Parent=BSGatlas-transcript-526,BSGatlas-transcript-527;comment="5'UTR" basu168 BSGatlas TSS 517330 517330 . + . ID=BSGatlas-TSS-385;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 517372 518541 . + . ID=BSGatlas-gene-563;color=#1E90FF;Name=alrA;locus_tag=BSU04640,BSU_04640;Parent=BSGatlas-operon-245 basu168 BSGatlas CDS 517372 518541 . + 0 ID=BSGatlas-gene-563_transcribed;color=#1E90FF;Name=alrA;Parent=BSGatlas-transcript-526,BSGatlas-transcript-527;comment="D-alanine racemase";synonyms="alr,alrA,dal";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.1 Cell wall synthesis,SW 1.1.1.1 Biosynthesis of peptidoglycan,SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.1 Biosynthesis of cell wall components,SW 2.6.1.1 Biosynthesis of peptidoglycan,SW 6 Groups of genes,SW 6.1 Essential genes";ec="5.1.1.1,EC-5.1.1.1";go="GO:0003824 catalytic activity,GO:0006522 alanine metabolic process,GO:0008784 alanine racemase activity,GO:0016853 isomerase activity,GO:0030170 pyridoxal phosphate binding,GO:0030632 D-alanine biosynthetic process";derives_from=BSGatlas-gene-563 basu168 BSGatlas transcript 518496 519339 . + . ID=BSGatlas-transcript-529;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-386 basu168 BSGatlas exon 518496 519339 . + . ID=BSGatlas-transcript-529_exon;Parent=BSGatlas-transcript-529 basu168 BSGatlas transcript 518496 519293 . + . ID=BSGatlas-transcript-528;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-386 basu168 BSGatlas exon 518496 519293 . + . ID=BSGatlas-transcript-528_exon;Parent=BSGatlas-transcript-528 basu168 BSGatlas UTR 518496 518656 . + . ID=BSGatlas-5'UTR-320;Parent=BSGatlas-transcript-528,BSGatlas-transcript-529;comment="5'UTR" basu168 BSGatlas TSS 518496 518496 . + . ID=BSGatlas-TSS-386;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 518542 518656 . + . ID=BSGatlas-internal_UTR-174;Parent=BSGatlas-transcript-526,BSGatlas-transcript-527;comment="internal_UTR" basu168 BSGatlas transcript 518591 519339 . + . ID=BSGatlas-transcript-531;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-387 basu168 BSGatlas exon 518591 519339 . + . ID=BSGatlas-transcript-531_exon;Parent=BSGatlas-transcript-531 basu168 BSGatlas transcript 518591 519293 . + . ID=BSGatlas-transcript-530;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-564,BSGatlas-gene-565;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-387 basu168 BSGatlas exon 518591 519293 . + . ID=BSGatlas-transcript-530_exon;Parent=BSGatlas-transcript-530 basu168 BSGatlas UTR 518591 518656 . + . ID=BSGatlas-5'UTR-321;Parent=BSGatlas-transcript-530,BSGatlas-transcript-531;comment="5'UTR" basu168 BSGatlas TSS 518591 518591 . + . ID=BSGatlas-TSS-387;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 518657 518938 . + . ID=BSGatlas-gene-564;color=#1E90FF;Name=ndoAI;locus_tag=BSU04650,BSU_04650;Parent=BSGatlas-operon-245 basu168 BSGatlas CDS 518657 518938 . + 0 ID=BSGatlas-gene-564_transcribed;color=#1E90FF;Name=ndoAI;Parent=BSGatlas-transcript-526,BSGatlas-transcript-527,BSGatlas-transcript-528,BSGatlas-transcript-529,BSGatlas-transcript-530,BSGatlas-transcript-531;comment="antitoxin EndoAI";synonyms="mazE,ndoAI,ydcD";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 4.3.17.2 Type 2 TA systems";go="GO:0005515 protein binding,GO:0006355 regulation of transcription, DNA-templated,GO:0042802 identical protein binding,GO:0060698 endoribonuclease inhibitor activity,GO:0060702 negative regulation of endoribonuclease activity";derives_from=BSGatlas-gene-564 basu168 BSGatlas transcript 518943 519339 . + . ID=BSGatlas-transcript-533;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-565;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas exon 518943 519339 . + . ID=BSGatlas-transcript-533_exon;Parent=BSGatlas-transcript-533 basu168 BSGatlas gene 518943 519293 . + . ID=BSGatlas-gene-565;color=#1E90FF;Name=ndoA;locus_tag=BSU04660,BSU_04660;Parent=BSGatlas-operon-245 basu168 BSGatlas transcript 518943 519293 . + . ID=BSGatlas-transcript-532;color=#FF9900;Parent=BSGatlas-operon-245,BSGatlas-gene-565;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas CDS 518943 519293 . + 0 ID=BSGatlas-gene-565_transcribed;color=#1E90FF;Name=ndoA;Parent=BSGatlas-transcript-526,BSGatlas-transcript-527,BSGatlas-transcript-528,BSGatlas-transcript-529,BSGatlas-transcript-530,BSGatlas-transcript-531,BSGatlas-transcript-532,BSGatlas-transcript-533;comment="endoribonuclease toxin";synonyms="endA,mazF,ndoA,ydcE";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.4 RNases,SW 3.2.4.2 Endoribonucleases,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.17 Toxins, antitoxins and immunity against toxins,SW 4.3.17.2 Type 2 TA systems";go="GO:0003677 DNA binding,GO:0003723 RNA binding,GO:0004518 nuclease activity,GO:0004519 endonuclease activity,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters,GO:0042803 protein homodimerization activity,GO:0090305 nucleic acid phosphodiester bond hydrolysis,GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic";derives_from=BSGatlas-gene-565 basu168 BSGatlas exon 518943 519293 . + . ID=BSGatlas-transcript-532_exon;Parent=BSGatlas-transcript-532 basu168 BSGatlas operon 519083 520765 . - . ID=BSGatlas-operon-246;color=#B32496 basu168 BSGatlas transcript 519083 520765 . - . ID=BSGatlas-transcript-536;color=#B37924;Parent=BSGatlas-operon-246,BSGatlas-gene-566;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-391 basu168 BSGatlas exon 519083 520765 . - . ID=BSGatlas-transcript-536_exon;Parent=BSGatlas-transcript-536 basu168 BSGatlas transcript 519083 520160 . - . ID=BSGatlas-transcript-535;color=#B37924;Parent=BSGatlas-operon-246,BSGatlas-gene-566;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-390 basu168 BSGatlas exon 519083 520160 . - . ID=BSGatlas-transcript-535_exon;Parent=BSGatlas-transcript-535 basu168 BSGatlas gene 519083 519559 . - . ID=BSGatlas-gene-566;color=#8F1D1D;Name=S163;locus_tag=new_519083_519559_c;Parent=BSGatlas-operon-246 basu168 BSGatlas transcript 519083 519559 . - . ID=BSGatlas-transcript-534;color=#B37924;Parent=BSGatlas-operon-246,BSGatlas-gene-566;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-389 basu168 BSGatlas ncRNA 519083 519559 . - . ID=BSGatlas-gene-566_transcribed;color=#8F1D1D;Name=S163;Parent=BSGatlas-transcript-534,BSGatlas-transcript-535,BSGatlas-transcript-536;synonyms="S163";derives_from=BSGatlas-gene-566 basu168 BSGatlas exon 519083 519559 . - . ID=BSGatlas-transcript-534_exon;Parent=BSGatlas-transcript-534 basu168 BSGatlas terminator 519104 519148 . - . ID=BSGatlas-terminator-284;Parent=BSGatlas-transcript-534,BSGatlas-transcript-535,BSGatlas-transcript-536;comment="Based on: Nicolas et al. downshift, Energy: -10.2[kcal/mol]" basu168 BSGatlas terminator 519251 519295 . + . ID=BSGatlas-terminator-285;Parent=BSGatlas-transcript-526,BSGatlas-transcript-528,BSGatlas-transcript-530,BSGatlas-transcript-532;comment="Based on: Nicolas et al. downshift, Energy: -8.9[kcal/mol]" basu168 BSGatlas UTR 519294 519339 . + . ID=BSGatlas-3'UTR-184;Parent=BSGatlas-transcript-527,BSGatlas-transcript-529,BSGatlas-transcript-531,BSGatlas-transcript-533;comment="3'UTR" basu168 BSGatlas terminator 519301 519339 . + . ID=BSGatlas-terminator-286;Parent=BSGatlas-transcript-527,BSGatlas-transcript-529,BSGatlas-transcript-531,BSGatlas-transcript-533;comment="Based on: BsubCyc,DBTBS, Energy: -11.8[kcal/mol]" basu168 BSGatlas operon 519362 524297 . + . ID=BSGatlas-operon-247;color=#FF00CC basu168 BSGatlas transcript 519362 524297 . + . ID=BSGatlas-transcript-538;color=#FF9900;Parent=BSGatlas-operon-247,BSGatlas-gene-567,BSGatlas-gene-568,BSGatlas-gene-569,BSGatlas-gene-570,BSGatlas-gene-571,BSGatlas-gene-572,BSGatlas-gene-573,BSGatlas-gene-574;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-388 basu168 BSGatlas exon 519362 524297 . + . ID=BSGatlas-transcript-538_exon;Parent=BSGatlas-transcript-538 basu168 BSGatlas transcript 519362 524249 . + . ID=BSGatlas-transcript-537;color=#FF9900;Parent=BSGatlas-operon-247,BSGatlas-gene-567,BSGatlas-gene-568,BSGatlas-gene-569,BSGatlas-gene-570,BSGatlas-gene-571,BSGatlas-gene-572,BSGatlas-gene-573,BSGatlas-gene-574;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-388 basu168 BSGatlas exon 519362 524249 . + . ID=BSGatlas-transcript-537_exon;Parent=BSGatlas-transcript-537 basu168 BSGatlas UTR 519362 519407 . + . ID=BSGatlas-5'UTR-322;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="5'UTR" basu168 BSGatlas TSS 519362 519362 . + . ID=BSGatlas-TSS-388;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 8002610" basu168 BSGatlas gene 519408 520232 . + . ID=BSGatlas-gene-567;color=#1E90FF;Name=rsbRA;locus_tag=BSU04670,BSU_04670;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 519408 520232 . + 0 ID=BSGatlas-gene-567_transcribed;color=#1E90FF;Name=rsbRA;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="component of the anxiosome (stressosome);positive regulation of sigma(B) activity in response tosalt and heat stress";synonyms="rsbR,rsbRA,ycxR";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.6 Phosphorylation on a Thr residue";derives_from=BSGatlas-gene-567 basu168 BSGatlas TSS 519559 519559 . - . ID=BSGatlas-TSS-389;color=#B32424;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 519560 520765 . - . ID=BSGatlas-5'UTR-324;Parent=BSGatlas-transcript-536;comment="5'UTR" basu168 BSGatlas UTR 519560 520160 . - . ID=BSGatlas-5'UTR-323;Parent=BSGatlas-transcript-535;comment="5'UTR" basu168 BSGatlas TSS 520160 520160 . - . ID=BSGatlas-TSS-390;color=#B32424;comment="Simga: B, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 520237 520602 . + . ID=BSGatlas-gene-568;color=#1E90FF;Name=rsbS;locus_tag=BSU04680,BSU_04680;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 520237 520602 . + 0 ID=BSGatlas-gene-568_transcribed;color=#1E90FF;Name=rsbS;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="antagonist of RsbT";synonyms="rsbS,ycxS";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";derives_from=BSGatlas-gene-568 basu168 BSGatlas gene 520606 521007 . + . ID=BSGatlas-gene-569;color=#1E90FF;Name=rsbT;locus_tag=BSU04690,BSU_04690;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 520606 521007 . + 0 ID=BSGatlas-gene-569_transcribed;color=#1E90FF;Name=rsbT;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="switch protein/serine-threonine kinase; controlsthe activity of the anxiosome (stressosome)";synonyms="rsbT,ycxT";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors";ec="2.7.11.1";go="GO:0000166 nucleotide binding,GO:0004674 protein serine/threonine kinase activity,GO:0005524 ATP binding,GO:0006468 protein phosphorylation,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity";derives_from=BSGatlas-gene-569 basu168 BSGatlas TSS 520765 520765 . - . ID=BSGatlas-TSS-391;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 521019 522026 . + . ID=BSGatlas-gene-570;color=#1E90FF;Name=rsbU;locus_tag=BSU04700,BSU_04700;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 521019 522026 . + 0 ID=BSGatlas-gene-570_transcribed;color=#1E90FF;Name=rsbU;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="protein serine phosphatase; controls theactivity of the anxiosome (stressosome)";synonyms="rsbU";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors";ec="3.1.3.3";go="GO:0003824 catalytic activity,GO:0004647 phosphoserine phosphatase activity,GO:0004721 phosphoprotein phosphatase activity,GO:0006468 protein phosphorylation,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-570 basu168 BSGatlas UTR 522027 522087 . + . ID=BSGatlas-internal_UTR-175;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538;comment="internal_UTR" basu168 BSGatlas transcript 522056 524297 . + . ID=BSGatlas-transcript-540;color=#FF9900;Parent=BSGatlas-operon-247,BSGatlas-gene-571,BSGatlas-gene-572,BSGatlas-gene-573,BSGatlas-gene-574;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-392 basu168 BSGatlas exon 522056 524297 . + . ID=BSGatlas-transcript-540_exon;Parent=BSGatlas-transcript-540 basu168 BSGatlas transcript 522056 524249 . + . ID=BSGatlas-transcript-539;color=#FF9900;Parent=BSGatlas-operon-247,BSGatlas-gene-571,BSGatlas-gene-572,BSGatlas-gene-573,BSGatlas-gene-574;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-392 basu168 BSGatlas exon 522056 524249 . + . ID=BSGatlas-transcript-539_exon;Parent=BSGatlas-transcript-539 basu168 BSGatlas UTR 522056 522087 . + . ID=BSGatlas-5'UTR-325;Parent=BSGatlas-transcript-539,BSGatlas-transcript-540;comment="5'UTR" basu168 BSGatlas TSS 522056 522056 . + . ID=BSGatlas-TSS-392;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 2170324,8012595,8253681" basu168 BSGatlas gene 522088 522417 . + . ID=BSGatlas-gene-571;color=#1E90FF;Name=rsbV;locus_tag=BSU04710,BSU_04710;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 522088 522417 . + 0 ID=BSGatlas-gene-571_transcribed;color=#1E90FF;Name=rsbV;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538,BSGatlas-transcript-539,BSGatlas-transcript-540;comment="anti-anti-sigma factor (antagonist of RsbW)";synonyms="rsbV";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.5 Phosphorylation on a Ser residue";go="GO:0006355 regulation of transcription, DNA-templated,GO:0045152 antisigma factor binding";derives_from=BSGatlas-gene-571 basu168 BSGatlas gene 522414 522896 . + . ID=BSGatlas-gene-572;color=#1E90FF;Name=rsbW;locus_tag=BSU04720,BSU_04720;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 522414 522896 . + 0 ID=BSGatlas-gene-572_transcribed;color=#1E90FF;Name=rsbW;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538,BSGatlas-transcript-539,BSGatlas-transcript-540;comment="switch protein/serine kinase and anti-sigmafactor (inhibitory sigma-B binding protein)";synonyms="rsbW";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";ec="2.7.11.1";go="GO:0000166 nucleotide binding,GO:0004674 protein serine/threonine kinase activity,GO:0005524 ATP binding,GO:0006468 protein phosphorylation,GO:0006950 response to stress,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0016989 sigma factor antagonist activity,GO:0045892 negative regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-572 basu168 BSGatlas gene 522862 523650 . + . ID=BSGatlas-gene-573;color=#1E90FF;Name=sigB;locus_tag=BSU04730,BSU_04730;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 522862 523650 . + 0 ID=BSGatlas-gene-573_transcribed;color=#1E90FF;Name=sigB;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538,BSGatlas-transcript-539,BSGatlas-transcript-540;comment="RNA polymerase sigma-37 factor (sigma(B))";synonyms="rpoF,sigB";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.1 Transcription,SW 3.2.1.2 Sigma factors,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.1 Sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0000303 response to superoxide,GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006352 DNA-templated transcription, initiation,GO:0006355 regulation of transcription, DNA-templated,GO:0006950 response to stress,GO:0016987 sigma factor activity,GO:0042542 response to hydrogen peroxide,GO:0043620 regulation of DNA-templated transcription in response to stress";derives_from=BSGatlas-gene-573 basu168 BSGatlas gene 523650 524249 . + . ID=BSGatlas-gene-574;color=#1E90FF;Name=rsbX;locus_tag=BSU04740,BSU_04740;Parent=BSGatlas-operon-247 basu168 BSGatlas CDS 523650 524249 . + 0 ID=BSGatlas-gene-574_transcribed;color=#1E90FF;Name=rsbX;Parent=BSGatlas-transcript-537,BSGatlas-transcript-538,BSGatlas-transcript-539,BSGatlas-transcript-540;comment="serine phosphatase";synonyms="rsbX";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.1 Sigma factors and their control,SW 3.4.1.2 Control of sigma factors,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";ec="3.1.3.3";go="GO:0003824 catalytic activity,GO:0004647 phosphoserine phosphatase activity,GO:0004721 phosphoprotein phosphatase activity,GO:0008152 metabolic process,GO:0009408 response to heat,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-574 basu168 BSGatlas terminator 524213 524257 . + . ID=BSGatlas-terminator-287;Parent=BSGatlas-transcript-537,BSGatlas-transcript-539;comment="Based on: Nicolas et al. downshift, Energy: -6[kcal/mol]" basu168 BSGatlas UTR 524250 524297 . + . ID=BSGatlas-3'UTR-185;Parent=BSGatlas-transcript-538,BSGatlas-transcript-540;comment="3'UTR" basu168 BSGatlas terminator 524258 524297 . + . ID=BSGatlas-terminator-288;Parent=BSGatlas-transcript-538,BSGatlas-transcript-540;comment="Based on: BsubCyc,DBTBS, Energy: -13.5[kcal/mol]" basu168 BSGatlas operon 524326 524476 . + . ID=BSGatlas-operon-248;color=#FF00CC basu168 BSGatlas transcript 524326 524476 . + . ID=BSGatlas-transcript-541;color=#FF9900;Parent=BSGatlas-operon-248,BSGatlas-gene-575;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-393 basu168 BSGatlas exon 524326 524476 . + . ID=BSGatlas-transcript-541_exon;Parent=BSGatlas-transcript-541 basu168 BSGatlas UTR 524326 524359 . + . ID=BSGatlas-5'UTR-326;Parent=BSGatlas-transcript-541;comment="5'UTR" basu168 BSGatlas TSS 524326 524326 . + . ID=BSGatlas-TSS-393;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 524360 524476 . + . ID=BSGatlas-gene-575;color=#1E90FF;locus_tag=BSU_04745;Parent=BSGatlas-operon-248 basu168 BSGatlas CDS 524360 524476 . + 0 ID=BSGatlas-gene-575_transcribed;color=#1E90FF;Parent=BSGatlas-transcript-541;comment="hypothetical protein";derives_from=BSGatlas-gene-575 basu168 BSGatlas operon 524492 525649 . + . ID=BSGatlas-operon-249;color=#FF00CC basu168 BSGatlas transcript 524492 525649 . + . ID=BSGatlas-transcript-542;color=#FF9900;Parent=BSGatlas-operon-249,BSGatlas-gene-576,BSGatlas-gene-577,BSGatlas-gene-579;comment="Based on: SubtiWiki" basu168 BSGatlas exon 524492 525649 . + . ID=BSGatlas-transcript-542_exon;Parent=BSGatlas-transcript-542 basu168 BSGatlas gene 524492 524785 . + . ID=BSGatlas-gene-576;color=#1E90FF;Name=ydcF;locus_tag=BSU04750,BSU_04750;Parent=BSGatlas-operon-249 basu168 BSGatlas CDS 524492 524785 . + 0 ID=BSGatlas-gene-576_transcribed;color=#1E90FF;Name=ydcF;Parent=BSGatlas-transcript-542;comment="conserved protein of unknown function";synonyms="ydcF";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-576 basu168 BSGatlas transcript 524782 525649 . + . ID=BSGatlas-transcript-543;color=#FF9900;Parent=BSGatlas-operon-249,BSGatlas-gene-577,BSGatlas-gene-579;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-394 basu168 BSGatlas exon 524782 525649 . + . ID=BSGatlas-transcript-543_exon;Parent=BSGatlas-transcript-543 basu168 BSGatlas gene 524782 525222 . + . ID=BSGatlas-gene-577;color=#1E90FF;Name=ydcG;locus_tag=BSU04760,BSU_04760;Parent=BSGatlas-operon-249 basu168 BSGatlas CDS 524782 525222 . + 0 ID=BSGatlas-gene-577_transcribed;color=#1E90FF;Name=ydcG;Parent=BSGatlas-transcript-542,BSGatlas-transcript-543;comment="conserved protein of unknown function";synonyms="ydcG";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-577 basu168 BSGatlas TSS 524788 524788 . + . ID=BSGatlas-TSS-394;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 525021 528076 . - . ID=BSGatlas-operon-250;color=#B32496 basu168 BSGatlas gene 525021 528076 . - . ID=BSGatlas-gene-578;color=#8F1D1D;Name=S166;locus_tag=new_525021_528076_c;Parent=BSGatlas-operon-250 basu168 BSGatlas transcript 525021 528076 . - . ID=BSGatlas-transcript-544;color=#B37924;Parent=BSGatlas-operon-250,BSGatlas-gene-581,BSGatlas-gene-578;comment="Based on: SubtiWiki" basu168 BSGatlas ncRNA 525021 528076 . - . ID=BSGatlas-gene-578_transcribed;color=#8F1D1D;Name=S166;Parent=BSGatlas-transcript-544;synonyms="S166";derives_from=BSGatlas-gene-578 basu168 BSGatlas exon 525021 528076 . - . ID=BSGatlas-transcript-544_exon;Parent=BSGatlas-transcript-544 basu168 BSGatlas gene 525206 525649 . + . ID=BSGatlas-gene-579;color=#1E90FF;Name=ydcH;locus_tag=BSU04770,BSU_04770;Parent=BSGatlas-operon-249 basu168 BSGatlas CDS 525206 525649 . + 0 ID=BSGatlas-gene-579_transcribed;color=#1E90FF;Name=ydcH;Parent=BSGatlas-transcript-542,BSGatlas-transcript-543;comment="putative transcriptional regulator";synonyms="pamR,ydcH";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-579 basu168 BSGatlas terminator 525602 525646 . + . ID=BSGatlas-terminator-289;Parent=BSGatlas-transcript-542,BSGatlas-transcript-543;comment="Based on: Nicolas et al. downshift, Energy: -6.8[kcal/mol]" basu168 BSGatlas operon 525697 527902 . + . ID=BSGatlas-operon-251;color=#FF00CC basu168 BSGatlas transcript 525697 527902 . + . ID=BSGatlas-transcript-545;color=#FF9900;Parent=BSGatlas-operon-251,BSGatlas-gene-580;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-395 basu168 BSGatlas exon 525697 527902 . + . ID=BSGatlas-transcript-545_exon;Parent=BSGatlas-transcript-545 basu168 BSGatlas UTR 525697 525742 . + . ID=BSGatlas-5'UTR-327;Parent=BSGatlas-transcript-545;comment="5'UTR" basu168 BSGatlas TSS 525697 525697 . + . ID=BSGatlas-TSS-395;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 525743 527902 . + . ID=BSGatlas-gene-580;color=#1E90FF;Name=tex;locus_tag=BSU04780,BSU_04780;Parent=BSGatlas-operon-251 basu168 BSGatlas CDS 525743 527902 . + 0 ID=BSGatlas-gene-580_transcribed;color=#1E90FF;Name=tex;Parent=BSGatlas-transcript-545;comment="RNA helicase transcriptional accessory protein";synonyms="ydcI";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.5 RNase/ based on similarity,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.1 Phosphorylation on an Arg residue";ec="EC-3.6.4.13";go="GO:0003676 nucleic acid binding,GO:0003723 RNA binding,GO:0006139 nucleobase-containing compound metabolic process,GO:0016788 hydrolase activity, acting on ester bonds";derives_from=BSGatlas-gene-580 basu168 BSGatlas operon 527912 528581 . + . ID=BSGatlas-operon-252;color=#FF00CC basu168 BSGatlas transcript 527912 528581 . + . ID=BSGatlas-transcript-546;color=#FF9900;Parent=BSGatlas-operon-252,BSGatlas-gene-582;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-396 basu168 BSGatlas exon 527912 528581 . + . ID=BSGatlas-transcript-546_exon;Parent=BSGatlas-transcript-546 basu168 BSGatlas UTR 527912 528128 . + . ID=BSGatlas-5'UTR-328;Parent=BSGatlas-transcript-546;comment="5'UTR" basu168 BSGatlas gene 527912 528025 . - . ID=BSGatlas-gene-581;color=#3474B3;Name=cmpA;locus_tag=G8J2-20,BSU_04785;Parent=BSGatlas-operon-250 basu168 BSGatlas CDS 527912 528025 . - 0 ID=BSGatlas-gene-581_transcribed;color=#3474B3;Name=cmpA;Parent=BSGatlas-transcript-544;comment="factor allowing degradation of SpoIVA by ClpXP";synonyms="cmpA";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.8 Not yet assigned";go="GO:0034301 endospore formation";derives_from=BSGatlas-gene-581 basu168 BSGatlas TSS 527912 527912 . + . ID=BSGatlas-TSS-396;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 528082 528082 . - . ID=BSGatlas-TSS-397;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 528129 528581 . + . ID=BSGatlas-gene-582;color=#1E90FF;Name=ydcK;locus_tag=BSU04790,BSU_04790;Parent=BSGatlas-operon-252 basu168 BSGatlas CDS 528129 528581 . + 0 ID=BSGatlas-gene-582_transcribed;color=#1E90FF;Name=ydcK;Parent=BSGatlas-transcript-546;comment="conserved protein of unknown function";synonyms="ydcK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005737 cytoplasm,GO:0008270 zinc ion binding,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-582 basu168 BSGatlas operon 528616 528778 . + . ID=BSGatlas-operon-253;color=#FF00CC basu168 BSGatlas transcript 528616 528778 . + . ID=BSGatlas-transcript-547;color=#FF9900;Parent=BSGatlas-operon-253,BSGatlas-gene-583;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-398 basu168 BSGatlas exon 528616 528778 . + . ID=BSGatlas-transcript-547_exon;Parent=BSGatlas-transcript-547 basu168 BSGatlas UTR 528616 528702 . + . ID=BSGatlas-5'UTR-329;Parent=BSGatlas-transcript-547;comment="5'UTR" basu168 BSGatlas TSS 528616 528616 . + . ID=BSGatlas-TSS-398;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 528626 531554 . - . ID=BSGatlas-operon-254;color=#B32496 basu168 BSGatlas transcript 528626 531554 . - . ID=BSGatlas-transcript-548;color=#B37924;Parent=BSGatlas-operon-254,BSGatlas-gene-592,BSGatlas-gene-591,BSGatlas-gene-590;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-399 basu168 BSGatlas exon 528626 531554 . - . ID=BSGatlas-transcript-548_exon;Parent=BSGatlas-transcript-548 basu168 BSGatlas UTR 528626 529504 . - . ID=BSGatlas-3'UTR-186;Parent=BSGatlas-transcript-548;comment="3'UTR" basu168 BSGatlas terminator 528626 528670 . - . ID=BSGatlas-terminator-290;Parent=BSGatlas-transcript-548;comment="Based on: Nicolas et al. downshift, Energy: -9.2[kcal/mol]" basu168 BSGatlas gene 528703 528778 . + . ID=BSGatlas-gene-583;color=#FFFF00;Name=trnS-Asn;locus_tag=BSU_tRNA_45,BSU_TRNA_45;Parent=BSGatlas-operon-253 basu168 BSGatlas tRNA 528703 528778 . + . ID=BSGatlas-gene-583_transcribed;color=#FFFF00;Name=trnS-Asn;Parent=BSGatlas-transcript-547;comment="tRNA-Asn";synonyms="trnS-Asn";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-583 basu168 BSGatlas gene 528782 528873 . + . ID=BSGatlas-gene-584;color=#FFFF00;Name=trnS-Ser;locus_tag=BSU_tRNA_46,BSU_TRNA_46 basu168 BSGatlas tRNA 528782 528873 . + . ID=BSGatlas-gene-584_transcribed;color=#FFFF00;Name=trnS-Ser;comment="tRNA-Ser";synonyms="trnS-Ser";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-584 basu168 BSGatlas gene 528902 528974 . + . ID=BSGatlas-gene-585;color=#FFFF00;Name=trnS-Glu;locus_tag=BSU_tRNA_47,BSU_TRNA_47 basu168 BSGatlas tRNA 528902 528974 . + . ID=BSGatlas-gene-585_transcribed;color=#FFFF00;Name=trnS-Glu;comment="tRNA-Glu";synonyms="trnS-Glu";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-585 basu168 BSGatlas gene 528985 529060 . + . ID=BSGatlas-gene-586;color=#FFFF00;Name=trnS-Gln;locus_tag=BSU_tRNA_48,BSU_TRNA_48 basu168 BSGatlas tRNA 528985 529060 . + . ID=BSGatlas-gene-586_transcribed;color=#FFFF00;Name=trnS-Gln;comment="tRNA-Gln";synonyms="trnS-Gln";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-586 basu168 BSGatlas gene 529086 529162 . + . ID=BSGatlas-gene-587;color=#FFFF00;Name=trnS-Lys;locus_tag=BSU_tRNA_49,BSU_TRNA_49 basu168 BSGatlas tRNA 529086 529162 . + . ID=BSGatlas-gene-587_transcribed;color=#FFFF00;Name=trnS-Lys;comment="tRNA-Lys";synonyms="sup-3,trnS-Lys";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-587 basu168 BSGatlas operon 529173 529342 . + . ID=BSGatlas-operon-255;color=#FF00CC basu168 BSGatlas transcript 529173 529342 . + . ID=BSGatlas-transcript-549;color=#FF9900;Parent=BSGatlas-operon-255,BSGatlas-gene-588;comment="Based on: BSGatlas" basu168 BSGatlas exon 529173 529342 . + . ID=BSGatlas-transcript-549_exon;Parent=BSGatlas-transcript-549 basu168 BSGatlas gene 529173 529255 . + . ID=BSGatlas-gene-588;color=#FFFF00;Name=trnS-Leu1;locus_tag=BSU_tRNA_50,BSU_TRNA_50;Parent=BSGatlas-operon-255 basu168 BSGatlas tRNA 529173 529255 . + . ID=BSGatlas-gene-588_transcribed;color=#FFFF00;Name=trnS-Leu1;Parent=BSGatlas-transcript-549;comment="tRNA-Leu";synonyms="trnS-Leu1";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-588 basu168 BSGatlas UTR 529256 529342 . + . ID=BSGatlas-3'UTR-187;Parent=BSGatlas-transcript-549;comment="3'UTR" basu168 BSGatlas terminator 529298 529342 . + . ID=BSGatlas-terminator-291;Parent=BSGatlas-transcript-549;comment="Based on: Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas operon 529335 530385 . + . ID=BSGatlas-operon-256;color=#FF00CC basu168 BSGatlas transcript 529335 530385 . + . ID=BSGatlas-transcript-551;color=#FF9900;Parent=BSGatlas-operon-256,BSGatlas-gene-589;comment="Based on: BSGatlas" basu168 BSGatlas exon 529335 530385 . + . ID=BSGatlas-transcript-551_exon;Parent=BSGatlas-transcript-551 basu168 BSGatlas gene 529335 529422 . + . ID=BSGatlas-gene-589;color=#FFFF00;Name=trnS-Leu2;locus_tag=BSU_tRNA_51,BSU_TRNA_51;Parent=BSGatlas-operon-256 basu168 BSGatlas transcript 529335 529422 . + . ID=BSGatlas-transcript-550;color=#FF9900;Parent=BSGatlas-operon-256,BSGatlas-gene-589;comment="Based on: BSGatlas" basu168 BSGatlas tRNA 529335 529422 . + . ID=BSGatlas-gene-589_transcribed;color=#FFFF00;Name=trnS-Leu2;Parent=BSGatlas-transcript-550,BSGatlas-transcript-551;comment="tRNA-Leu";synonyms="trnS-Leu2";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-589 basu168 BSGatlas exon 529335 529422 . + . ID=BSGatlas-transcript-550_exon;Parent=BSGatlas-transcript-550 basu168 BSGatlas terminator 529387 529431 . + . ID=BSGatlas-terminator-292;Parent=BSGatlas-transcript-550;comment="Based on: Nicolas et al. downshift, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 529423 530385 . + . ID=BSGatlas-3'UTR-188;Parent=BSGatlas-transcript-551;comment="3'UTR" basu168 BSGatlas transcript 529455 531554 . - . ID=BSGatlas-transcript-552;color=#B37924;Parent=BSGatlas-operon-254,BSGatlas-gene-592,BSGatlas-gene-591,BSGatlas-gene-590;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-399 basu168 BSGatlas exon 529455 531554 . - . ID=BSGatlas-transcript-552_exon;Parent=BSGatlas-transcript-552 basu168 BSGatlas UTR 529455 529504 . - . ID=BSGatlas-3'UTR-189;Parent=BSGatlas-transcript-552;comment="3'UTR" basu168 BSGatlas terminator 529455 529499 . - . ID=BSGatlas-terminator-293;Parent=BSGatlas-transcript-552;comment="Based on: Nicolas et al. downshift, Energy: -9.2[kcal/mol]" basu168 BSGatlas gene 529505 530611 . - . ID=BSGatlas-gene-590;color=#3474B3;Name=ydcL;locus_tag=BSU04800,BSU_04800;Parent=BSGatlas-operon-254 basu168 BSGatlas CDS 529505 530611 . - 0 ID=BSGatlas-gene-590_transcribed;color=#3474B3;Name=ydcL;Parent=BSGatlas-transcript-548,BSGatlas-transcript-552;comment="ICEBs1 mobile element: integrase";synonyms="int,ydcL";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";go="GO:0003677 DNA binding,GO:0006310 DNA recombination,GO:0015074 DNA integration,GO:0046718 viral entry into host cell,GO:0070893 transposon integration,GO:0075713 establishment of integrated proviral latency";derives_from=BSGatlas-gene-590 basu168 BSGatlas terminator 530319 530385 . + . ID=BSGatlas-terminator-294;Parent=BSGatlas-transcript-551;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas gene 530624 531133 . - . ID=BSGatlas-gene-591;color=#3474B3;Name=immA;locus_tag=BSU04810,BSU_04810;Parent=BSGatlas-operon-254 basu168 BSGatlas CDS 530624 531133 . - 0 ID=BSGatlas-gene-591_transcribed;color=#3474B3;Name=immA;Parent=BSGatlas-transcript-548,BSGatlas-transcript-552;comment="ICEBs1 mobile element: site-specific proteasecleaving ImmR";synonyms="immA,ydcM";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.7 Proteolysis,SW 3.3.7.4 Additional proteins involved in proteolysis,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";go="GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008237 metallopeptidase activity,GO:0016787 hydrolase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-591 basu168 BSGatlas transcript 530914 531554 . - . ID=BSGatlas-transcript-553;color=#B37924;Parent=BSGatlas-operon-254,BSGatlas-gene-592;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-399 basu168 BSGatlas exon 530914 531554 . - . ID=BSGatlas-transcript-553_exon;Parent=BSGatlas-transcript-553 basu168 BSGatlas UTR 530914 531129 . - . ID=BSGatlas-3'UTR-190;Parent=BSGatlas-transcript-553;comment="3'UTR" basu168 BSGatlas terminator 530914 530958 . - . ID=BSGatlas-terminator-295;Parent=BSGatlas-transcript-553;comment="Based on: Nicolas et al. downshift, Energy: -11.8[kcal/mol]" basu168 BSGatlas gene 531130 531513 . - . ID=BSGatlas-gene-592;color=#3474B3;Name=immR;locus_tag=BSU04820,BSU_04820;Parent=BSGatlas-operon-254 basu168 BSGatlas CDS 531130 531513 . - 0 ID=BSGatlas-gene-592_transcribed;color=#3474B3;Name=immR;Parent=BSGatlas-transcript-548,BSGatlas-transcript-552,BSGatlas-transcript-553;comment="ICEBs1 mobile element: transcriptional regulator(Xre family)";synonyms="immR,ydcN";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-592 basu168 BSGatlas UTR 531514 531554 . - . ID=BSGatlas-5'UTR-330;Parent=BSGatlas-transcript-548,BSGatlas-transcript-552,BSGatlas-transcript-553;comment="5'UTR" basu168 BSGatlas TSS 531554 531554 . - . ID=BSGatlas-TSS-399;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 531740 545975 . + . ID=BSGatlas-operon-257;color=#FF00CC basu168 BSGatlas transcript 531740 545975 . + . ID=BSGatlas-transcript-556;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-593,BSGatlas-gene-594,BSGatlas-gene-595,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599,BSGatlas-gene-600,BSGatlas-gene-601,BSGatlas-gene-602,BSGatlas-gene-603,BSGatlas-gene-604,BSGatlas-gene-605,BSGatlas-gene-606,BSGatlas-gene-607,BSGatlas-gene-608,BSGatlas-gene-609,BSGatlas-gene-610,BSGatlas-gene-611,BSGatlas-gene-612,BSGatlas-gene-613;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-400 basu168 BSGatlas exon 531740 545975 . + . ID=BSGatlas-transcript-556_exon;Parent=BSGatlas-transcript-556 basu168 BSGatlas transcript 531740 538049 . + . ID=BSGatlas-transcript-555;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-593,BSGatlas-gene-594,BSGatlas-gene-595,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599,BSGatlas-gene-600,BSGatlas-gene-601,BSGatlas-gene-602,BSGatlas-gene-603,BSGatlas-gene-604,BSGatlas-gene-605;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-400 basu168 BSGatlas exon 531740 538049 . + . ID=BSGatlas-transcript-555_exon;Parent=BSGatlas-transcript-555 basu168 BSGatlas transcript 531740 534798 . + . ID=BSGatlas-transcript-554;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-593,BSGatlas-gene-594,BSGatlas-gene-595,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-400 basu168 BSGatlas exon 531740 534798 . + . ID=BSGatlas-transcript-554_exon;Parent=BSGatlas-transcript-554 basu168 BSGatlas UTR 531740 531786 . + . ID=BSGatlas-5'UTR-331;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="5'UTR" basu168 BSGatlas TSS 531740 531740 . + . ID=BSGatlas-TSS-400;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 531787 531981 . + . ID=BSGatlas-gene-593;color=#1E90FF;Name=xis;locus_tag=BSU04830,BSU_04830;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 531787 531981 . + 0 ID=BSGatlas-gene-593_transcribed;color=#1E90FF;Name=xis;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="ICEBs1 mobile element: excisionase";synonyms="sacV,xis,ydzC";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";go="GO:0003677 DNA binding,GO:0006310 DNA recombination,GO:0015074 DNA integration";derives_from=BSGatlas-gene-593 basu168 BSGatlas gene 531978 532238 . + . ID=BSGatlas-gene-594;color=#1E90FF;Name=ydzL;locus_tag=BSU04839,BSU_04839;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 531978 532238 . + 0 ID=BSGatlas-gene-594_transcribed;color=#1E90FF;Name=ydzL;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="ydzL";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-594 basu168 BSGatlas UTR 532239 532291 . + . ID=BSGatlas-internal_UTR-176;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="internal_UTR" basu168 BSGatlas gene 532292 532552 . + . ID=BSGatlas-gene-595;color=#1E90FF;Name=ydcO;locus_tag=BSU04840,BSU_04840;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 532292 532552 . + 0 ID=BSGatlas-gene-595_transcribed;color=#1E90FF;Name=ydcO;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="ydcO";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-595 basu168 BSGatlas UTR 532553 532757 . + . ID=BSGatlas-internal_UTR-177;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556;comment="internal_UTR" basu168 BSGatlas operon 532583 532642 . - . ID=BSGatlas-operon-258;color=#B32496 basu168 BSGatlas gene 532583 532642 . - . ID=BSGatlas-gene-596;color=#24B324;Name=S170_sncO;locus_tag=new_532412_532652_c,BSU_misc_RNA_65;Parent=BSGatlas-operon-258 basu168 BSGatlas transcript 532583 532642 . - . ID=BSGatlas-transcript-557;color=#B37924;Parent=BSGatlas-operon-258,BSGatlas-gene-596;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-402 basu168 BSGatlas sRNA 532583 532642 . - . ID=BSGatlas-gene-596_transcribed;color=#24B324;Name=S170_sncO;Parent=BSGatlas-transcript-557;comment="ICEBs1 mobile element: conserved smalluntranslated RNA";synonyms="S170";derives_from=BSGatlas-gene-596 basu168 BSGatlas exon 532583 532642 . - . ID=BSGatlas-transcript-557_exon;Parent=BSGatlas-transcript-557 basu168 BSGatlas transcript 532604 545975 . + . ID=BSGatlas-transcript-560;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599,BSGatlas-gene-600,BSGatlas-gene-601,BSGatlas-gene-602,BSGatlas-gene-603,BSGatlas-gene-604,BSGatlas-gene-605,BSGatlas-gene-606,BSGatlas-gene-607,BSGatlas-gene-608,BSGatlas-gene-609,BSGatlas-gene-610,BSGatlas-gene-611,BSGatlas-gene-612,BSGatlas-gene-613;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-401 basu168 BSGatlas exon 532604 545975 . + . ID=BSGatlas-transcript-560_exon;Parent=BSGatlas-transcript-560 basu168 BSGatlas transcript 532604 538049 . + . ID=BSGatlas-transcript-559;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599,BSGatlas-gene-600,BSGatlas-gene-601,BSGatlas-gene-602,BSGatlas-gene-603,BSGatlas-gene-604,BSGatlas-gene-605;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-401 basu168 BSGatlas exon 532604 538049 . + . ID=BSGatlas-transcript-559_exon;Parent=BSGatlas-transcript-559 basu168 BSGatlas transcript 532604 534798 . + . ID=BSGatlas-transcript-558;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-597,BSGatlas-gene-598,BSGatlas-gene-599;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-401 basu168 BSGatlas exon 532604 534798 . + . ID=BSGatlas-transcript-558_exon;Parent=BSGatlas-transcript-558 basu168 BSGatlas UTR 532604 532757 . + . ID=BSGatlas-5'UTR-332;Parent=BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="5'UTR" basu168 BSGatlas TSS 532604 532604 . + . ID=BSGatlas-TSS-401;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 532652 532652 . - . ID=BSGatlas-TSS-402;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 532758 532886 . + . ID=BSGatlas-gene-597;color=#1E90FF;locus_tag=BSU_04849;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 532758 532886 . + 0 ID=BSGatlas-gene-597_transcribed;color=#1E90FF;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: hypothetical protein";derives_from=BSGatlas-gene-597 basu168 BSGatlas UTR 532887 532921 . + . ID=BSGatlas-internal_UTR-178;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 532922 533302 . + . ID=BSGatlas-gene-598;color=#1E90FF;Name=helP;locus_tag=BSU04850,BSU_04850;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 532922 533302 . + 0 ID=BSGatlas-gene-598_transcribed;color=#1E90FF;Name=helP;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: helicase processivityfactor";synonyms="ydcP";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";derives_from=BSGatlas-gene-598 basu168 BSGatlas UTR 533303 533337 . + . ID=BSGatlas-internal_UTR-179;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 533338 534780 . + . ID=BSGatlas-gene-599;color=#1E90FF;Name=conQ;locus_tag=BSU04860,BSU_04860;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 533338 534780 . + 0 ID=BSGatlas-gene-599_transcribed;color=#1E90FF;Name=conQ;Parent=BSGatlas-transcript-554,BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-558,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: coupling conjugationprotein VirD4";synonyms="conQ,ydcQ";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007049 cell cycle,GO:0007059 chromosome segregation,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0051301 cell division";derives_from=BSGatlas-gene-599 basu168 BSGatlas terminator 534754 534798 . + . ID=BSGatlas-terminator-296;Parent=BSGatlas-transcript-554,BSGatlas-transcript-558;comment="Based on: Nicolas et al. downshift, Energy: -23.1[kcal/mol]" basu168 BSGatlas gene 534773 535831 . + . ID=BSGatlas-gene-600;color=#1E90FF;Name=nicK;locus_tag=BSU04870,BSU_04870;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 534773 535831 . + 0 ID=BSGatlas-gene-600_transcribed;color=#1E90FF;Name=nicK;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: DNA relaxase";synonyms="nicK,ydcR";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";go="GO:0000746 conjugation,GO:0003677 DNA binding,GO:0003916 DNA topoisomerase activity,GO:0006270 DNA replication initiation,GO:0015074 DNA integration";derives_from=BSGatlas-gene-600 basu168 BSGatlas UTR 534781 534798 . + . ID=BSGatlas-3'UTR-191;Parent=BSGatlas-transcript-554,BSGatlas-transcript-558;comment="3'UTR" basu168 BSGatlas UTR 535832 535878 . + . ID=BSGatlas-internal_UTR-180;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 535879 535933 . + . ID=BSGatlas-gene-601;color=#00FF00;Name=Bacillus-plasmid;Parent=BSGatlas-operon-257 basu168 BSGatlas sRNA 535879 535933 . + . ID=BSGatlas-gene-601_transcribed;color=#00FF00;Name=Bacillus-plasmid;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;derives_from=BSGatlas-gene-601 basu168 BSGatlas UTR 535934 536095 . + . ID=BSGatlas-internal_UTR-181;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 536096 536365 . + . ID=BSGatlas-gene-602;color=#1E90FF;Name=ydcS;locus_tag=BSU04880,BSU_04880;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 536096 536365 . + 0 ID=BSGatlas-gene-602_transcribed;color=#1E90FF;Name=ydcS;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="ydcS";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-602 basu168 BSGatlas TSS 536172 536172 . - . ID=BSGatlas-TSS-403;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 536366 536403 . + . ID=BSGatlas-internal_UTR-182;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 536404 536670 . + . ID=BSGatlas-gene-603;color=#1E90FF;Name=ydcT;locus_tag=BSU04890,BSU_04890;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 536404 536670 . + 0 ID=BSGatlas-gene-603_transcribed;color=#1E90FF;Name=ydcT;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="ydcT";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-603 basu168 BSGatlas UTR 536671 536686 . + . ID=BSGatlas-internal_UTR-183;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="internal_UTR" basu168 BSGatlas gene 536687 536995 . + . ID=BSGatlas-gene-604;color=#1E90FF;Name=yddA;locus_tag=BSU04900,BSU_04900;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 536687 536995 . + 0 ID=BSGatlas-gene-604_transcribed;color=#1E90FF;Name=yddA;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="yddA";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-604 basu168 BSGatlas gene 536985 538049 . + . ID=BSGatlas-gene-605;color=#1E90FF;Name=conB;locus_tag=BSU04910,BSU_04910;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 536985 538049 . + 0 ID=BSGatlas-gene-605_transcribed;color=#1E90FF;Name=conB;Parent=BSGatlas-transcript-555,BSGatlas-transcript-556,BSGatlas-transcript-559,BSGatlas-transcript-560;comment="ICEBs1 mobile element: subunit of theconjugation machinery VirB8";synonyms="conB,yddB";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-605 basu168 BSGatlas transcript 537526 545975 . + . ID=BSGatlas-transcript-561;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-606,BSGatlas-gene-607,BSGatlas-gene-608,BSGatlas-gene-609,BSGatlas-gene-610,BSGatlas-gene-611,BSGatlas-gene-612,BSGatlas-gene-613;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-404 basu168 BSGatlas exon 537526 545975 . + . ID=BSGatlas-transcript-561_exon;Parent=BSGatlas-transcript-561 basu168 BSGatlas UTR 537526 538060 . + . ID=BSGatlas-5'UTR-333;Parent=BSGatlas-transcript-561;comment="5'UTR" basu168 BSGatlas TSS 537526 537526 . + . ID=BSGatlas-TSS-404;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 537592 537636 . + . ID=BSGatlas-terminator-297;Parent=BSGatlas-transcript-555,BSGatlas-transcript-559;comment="Based on: Nicolas et al. downshift, Energy: -7.8[kcal/mol]" basu168 BSGatlas gene 538061 538309 . + . ID=BSGatlas-gene-606;color=#1E90FF;Name=conC;locus_tag=BSU04920,BSU_04920;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 538061 538309 . + 0 ID=BSGatlas-gene-606_transcribed;color=#1E90FF;Name=conC;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: subunit of theconjugation machinery";synonyms="conC,yddC";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-606 basu168 BSGatlas gene 538322 538846 . + . ID=BSGatlas-gene-607;color=#1E90FF;Name=conD;locus_tag=BSU04930,BSU_04930;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 538322 538846 . + 0 ID=BSGatlas-gene-607_transcribed;color=#1E90FF;Name=conD;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: subunit of theconjugation machinery";synonyms="conD,yddD";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-607 basu168 BSGatlas gene 538734 541229 . + . ID=BSGatlas-gene-608;color=#1E90FF;Name=conE;locus_tag=BSU04940,BSU_04940;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 538734 541229 . + 0 ID=BSGatlas-gene-608_transcribed;color=#1E90FF;Name=conE;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: VirB4-like ATPase";synonyms="conE,yddE";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0009291 unidirectional conjugation,GO:0060187 cell pole";derives_from=BSGatlas-gene-608 basu168 BSGatlas UTR 541230 541247 . + . ID=BSGatlas-internal_UTR-184;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="internal_UTR" basu168 BSGatlas gene 541248 541574 . + . ID=BSGatlas-gene-609;color=#1E90FF;Name=yddF;locus_tag=BSU04950,BSU_04950;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 541248 541574 . + 0 ID=BSGatlas-gene-609_transcribed;color=#1E90FF;Name=yddF;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="yddF";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-609 basu168 BSGatlas gene 541578 544025 . + . ID=BSGatlas-gene-610;color=#1E90FF;Name=conG;locus_tag=BSU04960,BSU_04960;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 541578 544025 . + 0 ID=BSGatlas-gene-610_transcribed;color=#1E90FF;Name=conG;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: VirB6 subunit of theconjugation machinery";synonyms="conG,yddG";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-610 basu168 BSGatlas gene 544022 545011 . + . ID=BSGatlas-gene-611;color=#1E90FF;Name=cwlT;locus_tag=BSU04970,BSU_04970;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 544022 545011 . + 0 ID=BSGatlas-gene-611_transcribed;color=#1E90FF;Name=cwlT;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: two-domain autolysin withN-acetylmuramidase and DL-endopeptidase activity VirB1";synonyms="cwlT,yddH";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.3 Cell wall degradation/ turnover,SW 1.1.3.1 Autolysis,SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";ec="EC-3.2.1.92";go="GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0008234 cysteine-type peptidase activity,GO:0009253 peptidoglycan catabolic process,GO:0016787 hydrolase activity,GO:0033922 peptidoglycan beta-N-acetylmuramidase activity";derives_from=BSGatlas-gene-611 basu168 BSGatlas gene 545026 545532 . + . ID=BSGatlas-gene-612;color=#1E90FF;Name=yddI;locus_tag=BSU04980,BSU_04980;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 545026 545532 . + 0 ID=BSGatlas-gene-612_transcribed;color=#1E90FF;Name=yddI;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="yddI";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-612 basu168 BSGatlas UTR 545533 545594 . + . ID=BSGatlas-internal_UTR-185;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561;comment="internal_UTR" basu168 BSGatlas transcript 545564 545975 . + . ID=BSGatlas-transcript-562;color=#FF9900;Parent=BSGatlas-operon-257,BSGatlas-gene-613;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-405 basu168 BSGatlas exon 545564 545975 . + . ID=BSGatlas-transcript-562_exon;Parent=BSGatlas-transcript-562 basu168 BSGatlas UTR 545564 545594 . + . ID=BSGatlas-5'UTR-334;Parent=BSGatlas-transcript-562;comment="5'UTR" basu168 BSGatlas TSS 545564 545564 . + . ID=BSGatlas-TSS-405;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 545595 545975 . + . ID=BSGatlas-gene-613;color=#1E90FF;Name=yddJ;locus_tag=BSU04990,BSU_04990;Parent=BSGatlas-operon-257 basu168 BSGatlas CDS 545595 545975 . + 0 ID=BSGatlas-gene-613_transcribed;color=#1E90FF;Name=yddJ;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561,BSGatlas-transcript-562;comment="ICEBs1 mobile element: putative lipoprotein ofunknown function";synonyms="yddJ";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-613 basu168 BSGatlas terminator 545930 545974 . + . ID=BSGatlas-terminator-298;Parent=BSGatlas-transcript-556,BSGatlas-transcript-560,BSGatlas-transcript-561,BSGatlas-transcript-562;comment="Based on: Nicolas et al. downshift, Energy: -14.7[kcal/mol]" basu168 BSGatlas operon 546006 547029 . - . ID=BSGatlas-operon-259;color=#B32496 basu168 BSGatlas transcript 546006 547029 . - . ID=BSGatlas-transcript-563;color=#B37924;Parent=BSGatlas-operon-259,BSGatlas-gene-614;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-406 basu168 BSGatlas exon 546006 547029 . - . ID=BSGatlas-transcript-563_exon;Parent=BSGatlas-transcript-563 basu168 BSGatlas UTR 546006 546165 . - . ID=BSGatlas-3'UTR-192;Parent=BSGatlas-transcript-563;comment="3'UTR" basu168 BSGatlas terminator 546006 546116 . - . ID=BSGatlas-terminator-299;Parent=BSGatlas-transcript-563;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -18.7[kcal/mol]" basu168 BSGatlas gene 546166 546966 . - . ID=BSGatlas-gene-614;color=#3474B3;Name=yddK;locus_tag=BSU05000,BSU_05000;Parent=BSGatlas-operon-259 basu168 BSGatlas CDS 546166 546966 . - 0 ID=BSGatlas-gene-614_transcribed;color=#3474B3;Name=yddK;Parent=BSGatlas-transcript-563;comment="ICEBs1 mobile element: conserved protein ofunknown function";synonyms="yddK";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0007165 signal transduction";derives_from=BSGatlas-gene-614 basu168 BSGatlas UTR 546967 547029 . - . ID=BSGatlas-5'UTR-335;Parent=BSGatlas-transcript-563;comment="5'UTR" basu168 BSGatlas TSS 547029 547029 . - . ID=BSGatlas-TSS-406;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 547306 548625 . + . ID=BSGatlas-operon-260;color=#FF00CC basu168 BSGatlas transcript 547306 548625 . + . ID=BSGatlas-transcript-565;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-615,BSGatlas-gene-616;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 547306 548625 . + . ID=BSGatlas-transcript-565_exon;Parent=BSGatlas-transcript-565 basu168 BSGatlas transcript 547306 548577 . + . ID=BSGatlas-transcript-564;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-615,BSGatlas-gene-616;comment="Based on: BsubCyc,DBTBS,SubtiWiki" basu168 BSGatlas exon 547306 548577 . + . ID=BSGatlas-transcript-564_exon;Parent=BSGatlas-transcript-564 basu168 BSGatlas gene 547306 548481 . + . ID=BSGatlas-gene-615;color=#1E90FF;Name=rapI;locus_tag=BSU05010,BSU_05010;Parent=BSGatlas-operon-260 basu168 BSGatlas CDS 547306 548481 . + 0 ID=BSGatlas-gene-615_transcribed;color=#1E90FF;Name=rapI;Parent=BSGatlas-transcript-564,BSGatlas-transcript-565;comment="ICEBs1 mobile element: response regulatoraspartate phosphatase";synonyms="rapI,yddL";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.4 Protein phosphatases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.2 Response regulator aspartate phosphatase,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 3.4.8 Quorum sensing,SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1";ec="3.1.-.-";go="GO:0004721 phosphoprotein phosphatase activity,GO:0008152 metabolic process,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-615 basu168 BSGatlas transcript 548192 548625 . + . ID=BSGatlas-transcript-567;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-407 basu168 BSGatlas exon 548192 548625 . + . ID=BSGatlas-transcript-567_exon;Parent=BSGatlas-transcript-567 basu168 BSGatlas transcript 548192 548577 . + . ID=BSGatlas-transcript-566;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-407 basu168 BSGatlas exon 548192 548577 . + . ID=BSGatlas-transcript-566_exon;Parent=BSGatlas-transcript-566 basu168 BSGatlas UTR 548192 548437 . + . ID=BSGatlas-5'UTR-336;Parent=BSGatlas-transcript-566,BSGatlas-transcript-567;comment="5'UTR" basu168 BSGatlas TSS 548192 548192 . + . ID=BSGatlas-TSS-407;color=#FF0000;comment="Simga: D, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 548334 548625 . + . ID=BSGatlas-transcript-569;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-408 basu168 BSGatlas exon 548334 548625 . + . ID=BSGatlas-transcript-569_exon;Parent=BSGatlas-transcript-569 basu168 BSGatlas transcript 548334 548577 . + . ID=BSGatlas-transcript-568;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-408 basu168 BSGatlas exon 548334 548577 . + . ID=BSGatlas-transcript-568_exon;Parent=BSGatlas-transcript-568 basu168 BSGatlas UTR 548334 548437 . + . ID=BSGatlas-5'UTR-337;Parent=BSGatlas-transcript-568,BSGatlas-transcript-569;comment="5'UTR" basu168 BSGatlas TSS 548334 548334 . + . ID=BSGatlas-TSS-408;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: DBTBS, PubMed: 11466295" basu168 BSGatlas transcript 548395 548625 . + . ID=BSGatlas-transcript-571;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-409 basu168 BSGatlas exon 548395 548625 . + . ID=BSGatlas-transcript-571_exon;Parent=BSGatlas-transcript-571 basu168 BSGatlas transcript 548395 548577 . + . ID=BSGatlas-transcript-570;color=#FF9900;Parent=BSGatlas-operon-260,BSGatlas-gene-616;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-409 basu168 BSGatlas exon 548395 548577 . + . ID=BSGatlas-transcript-570_exon;Parent=BSGatlas-transcript-570 basu168 BSGatlas UTR 548395 548437 . + . ID=BSGatlas-5'UTR-338;Parent=BSGatlas-transcript-570,BSGatlas-transcript-571;comment="5'UTR" basu168 BSGatlas TSS 548395 548395 . + . ID=BSGatlas-TSS-409;color=#FF0000;comment="Simga: H, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 11466295" basu168 BSGatlas gene 548438 548557 . + . ID=BSGatlas-gene-616;color=#1E90FF;Name=phrI;locus_tag=BSU05020,BSU_05020;Parent=BSGatlas-operon-260 basu168 BSGatlas CDS 548438 548557 . + 0 ID=BSGatlas-gene-616_transcribed;color=#1E90FF;Name=phrI;Parent=BSGatlas-transcript-564,BSGatlas-transcript-565,BSGatlas-transcript-566,BSGatlas-transcript-567,BSGatlas-transcript-568,BSGatlas-transcript-569,BSGatlas-transcript-570,BSGatlas-transcript-571;comment="ICEBs1 mobile element: secreted regulator of theactivity of phosphatase RapI";synonyms="phrI";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.7 Control of transcription factor (other than two-component system),SW 3.4.8 Quorum sensing,SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.8 Short peptides";go="GO:0000757 NA";derives_from=BSGatlas-gene-616 basu168 BSGatlas terminator 548533 548577 . + . ID=BSGatlas-terminator-300;Parent=BSGatlas-transcript-564,BSGatlas-transcript-566,BSGatlas-transcript-568,BSGatlas-transcript-570;comment="Based on: Nicolas et al. downshift, Energy: -10.4[kcal/mol]" basu168 BSGatlas UTR 548558 548625 . + . ID=BSGatlas-3'UTR-194;Parent=BSGatlas-transcript-565,BSGatlas-transcript-567,BSGatlas-transcript-569,BSGatlas-transcript-571;comment="3'UTR" basu168 BSGatlas UTR 548558 548577 . + . ID=BSGatlas-3'UTR-193;Parent=BSGatlas-transcript-564,BSGatlas-transcript-566,BSGatlas-transcript-568,BSGatlas-transcript-570;comment="3'UTR" basu168 BSGatlas terminator 548580 548625 . + . ID=BSGatlas-terminator-301;Parent=BSGatlas-transcript-565,BSGatlas-transcript-567,BSGatlas-transcript-569,BSGatlas-transcript-571;comment="Based on: BsubCyc,DBTBS, Energy: -13.1[kcal/mol]" basu168 BSGatlas operon 548710 549974 . + . ID=BSGatlas-operon-261;color=#FF00CC basu168 BSGatlas transcript 548710 549974 . + . ID=BSGatlas-transcript-572;color=#FF9900;Parent=BSGatlas-operon-261,BSGatlas-gene-617;comment="Based on: BSGatlas" basu168 BSGatlas exon 548710 549974 . + . ID=BSGatlas-transcript-572_exon;Parent=BSGatlas-transcript-572 basu168 BSGatlas gene 548710 549651 . + . ID=BSGatlas-gene-617;color=#1E90FF;Name=yddM;locus_tag=BSU05030,BSU_05030;Parent=BSGatlas-operon-261 basu168 BSGatlas CDS 548710 549651 . + 0 ID=BSGatlas-gene-617_transcribed;color=#1E90FF;Name=yddM;Parent=BSGatlas-transcript-572;comment="ICEBs1 mobile element: putative helicase";synonyms="yddM";subtiwiki_category="SW 5 Prophages and mobile genetic elements,SW 5.2 Mobile genetic elements,SW 5.2.1 ICEBs1,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-617 basu168 BSGatlas UTR 549652 549974 . + . ID=BSGatlas-3'UTR-195;Parent=BSGatlas-transcript-572;comment="3'UTR" basu168 BSGatlas operon 549890 551259 . - . ID=BSGatlas-operon-262;color=#B32496 basu168 BSGatlas transcript 549890 551259 . - . ID=BSGatlas-transcript-573;color=#B37924;Parent=BSGatlas-operon-262,BSGatlas-gene-618;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-410 basu168 BSGatlas exon 549890 551259 . - . ID=BSGatlas-transcript-573_exon;Parent=BSGatlas-transcript-573 basu168 BSGatlas UTR 549890 550239 . - . ID=BSGatlas-3'UTR-196;Parent=BSGatlas-transcript-573;comment="3'UTR" basu168 BSGatlas terminator 549890 549956 . - . ID=BSGatlas-terminator-302;Parent=BSGatlas-transcript-573;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas terminator 549930 549974 . + . ID=BSGatlas-terminator-303;Parent=BSGatlas-transcript-572;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -12.2[kcal/mol]" basu168 BSGatlas transcript 549962 551259 . - . ID=BSGatlas-transcript-574;color=#B37924;Parent=BSGatlas-operon-262,BSGatlas-gene-618;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-410 basu168 BSGatlas exon 549962 551259 . - . ID=BSGatlas-transcript-574_exon;Parent=BSGatlas-transcript-574 basu168 BSGatlas UTR 549962 550239 . - . ID=BSGatlas-3'UTR-197;Parent=BSGatlas-transcript-574;comment="3'UTR" basu168 BSGatlas terminator 549962 550006 . - . ID=BSGatlas-terminator-304;Parent=BSGatlas-transcript-574;comment="Based on: Nicolas et al. downshift, Energy: -18.7[kcal/mol]" basu168 BSGatlas gene 550240 551259 . - . ID=BSGatlas-gene-618;color=#3474B3;Name=yddN;locus_tag=BSU05040,BSU_05040;Parent=BSGatlas-operon-262 basu168 BSGatlas CDS 550240 551259 . - 0 ID=BSGatlas-gene-618_transcribed;color=#3474B3;Name=yddN;Parent=BSGatlas-transcript-573,BSGatlas-transcript-574;comment="putative alkanal monooxygenase";synonyms="yddN";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.14.14.-";go="GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-618 basu168 BSGatlas TSS 550948 550948 . - . ID=BSGatlas-TSS-410;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 551073 551978 . + . ID=BSGatlas-operon-263;color=#FF00CC basu168 BSGatlas transcript 551073 551978 . + . ID=BSGatlas-transcript-575;color=#FF9900;Parent=BSGatlas-operon-263,BSGatlas-gene-619;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-411 basu168 BSGatlas exon 551073 551978 . + . ID=BSGatlas-transcript-575_exon;Parent=BSGatlas-transcript-575 basu168 BSGatlas UTR 551073 551518 . + . ID=BSGatlas-5'UTR-339;Parent=BSGatlas-transcript-575;comment="5'UTR" basu168 BSGatlas TSS 551073 551073 . + . ID=BSGatlas-TSS-411;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 551519 551929 . + . ID=BSGatlas-gene-619;color=#1E90FF;Name=lrpA;locus_tag=BSU05050,BSU_05050;Parent=BSGatlas-operon-263 basu168 BSGatlas CDS 551519 551929 . + 0 ID=BSGatlas-gene-619_transcribed;color=#1E90FF;Name=lrpA;Parent=BSGatlas-transcript-575;comment="transcriptional regulator (Lrp/AsnC family)";synonyms="lrpA,yddO";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.7 phosphorelay,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-619 basu168 BSGatlas UTR 551930 551978 . + . ID=BSGatlas-3'UTR-198;Parent=BSGatlas-transcript-575;comment="3'UTR" basu168 BSGatlas terminator 551934 551978 . + . ID=BSGatlas-terminator-305;Parent=BSGatlas-transcript-575;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -15.7[kcal/mol]" basu168 BSGatlas operon 552052 552501 . - . ID=BSGatlas-operon-264;color=#B32496 basu168 BSGatlas gene 552052 552501 . - . ID=BSGatlas-gene-620;color=#3474B3;Name=lrpB;locus_tag=BSU05060,BSU_05060;Parent=BSGatlas-operon-264 basu168 BSGatlas transcript 552052 552501 . - . ID=BSGatlas-transcript-576;color=#B37924;Parent=BSGatlas-operon-264,BSGatlas-gene-620;comment="Based on: BsubCyc" basu168 BSGatlas CDS 552052 552501 . - 0 ID=BSGatlas-gene-620_transcribed;color=#3474B3;Name=lrpB;Parent=BSGatlas-transcript-576;comment="transcriptional regulator (Lrp/AsnC family)";synonyms="lrpB,yddP";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 3.4.7 phosphorelay,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.2 phosphorelay";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-620 basu168 BSGatlas exon 552052 552501 . - . ID=BSGatlas-transcript-576_exon;Parent=BSGatlas-transcript-576 basu168 BSGatlas gene 552616 553158 . + . ID=BSGatlas-gene-621;color=#1E90FF;Name=yddQ;locus_tag=BSU05070,BSU_05070 basu168 BSGatlas CDS 552616 553158 . + 0 ID=BSGatlas-gene-621_transcribed;color=#1E90FF;Name=yddQ;comment="putative hydrolase";synonyms="yddQ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="3.-.-.-";go="GO:0003824 catalytic activity,GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-621 basu168 BSGatlas operon 553661 554475 . + . ID=BSGatlas-operon-265;color=#FF00CC basu168 BSGatlas transcript 553661 554475 . + . ID=BSGatlas-transcript-577;color=#FF9900;Parent=BSGatlas-operon-265,BSGatlas-gene-622;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-412 basu168 BSGatlas exon 553661 554475 . + . ID=BSGatlas-transcript-577_exon;Parent=BSGatlas-transcript-577 basu168 BSGatlas UTR 553661 553710 . + . ID=BSGatlas-5'UTR-340;Parent=BSGatlas-transcript-577;comment="5'UTR" basu168 BSGatlas TSS 553661 553661 . + . ID=BSGatlas-TSS-412;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 553711 554475 . + . ID=BSGatlas-gene-622;color=#1E90FF;Name=yddR;locus_tag=BSU05080,BSU_05080;Parent=BSGatlas-operon-265 basu168 BSGatlas CDS 553711 554475 . + 0 ID=BSGatlas-gene-622_transcribed;color=#1E90FF;Name=yddR;Parent=BSGatlas-transcript-577;comment="putative metal-dependent hydrolase";synonyms="yddR";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="3.-.-.-";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-622 basu168 BSGatlas gene 554669 555979 . + . ID=BSGatlas-gene-623;color=#1E90FF;Name=yddS;locus_tag=BSU05090,BSU_05090 basu168 BSGatlas CDS 554669 555979 . + 0 ID=BSGatlas-gene-623_transcribed;color=#1E90FF;Name=yddS;comment="putative permease";synonyms="yddS";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0022857 transmembrane transporter activity,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-623 basu168 BSGatlas operon 556002 556738 . + . ID=BSGatlas-operon-266;color=#FF00CC basu168 BSGatlas transcript 556002 556738 . + . ID=BSGatlas-transcript-578;color=#FF9900;Parent=BSGatlas-operon-266,BSGatlas-gene-624;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-413 basu168 BSGatlas exon 556002 556738 . + . ID=BSGatlas-transcript-578_exon;Parent=BSGatlas-transcript-578 basu168 BSGatlas UTR 556002 556561 . + . ID=BSGatlas-5'UTR-341;Parent=BSGatlas-transcript-578;comment="5'UTR" basu168 BSGatlas TSS 556002 556002 . + . ID=BSGatlas-TSS-413;color=#FF0000;comment="Simga: ?, Resolution: 33, Based on: Nicolas et al 5' UTR start, PubMed: " basu168 BSGatlas gene 556562 556738 . + . ID=BSGatlas-gene-624;color=#1E90FF;Name=ydzM;locus_tag=BSU05099,BSU_05099;Parent=BSGatlas-operon-266 basu168 BSGatlas CDS 556562 556738 . + 0 ID=BSGatlas-gene-624_transcribed;color=#1E90FF;Name=ydzM;Parent=BSGatlas-transcript-578;comment="conserved phage protein of unknown function";synonyms="ydzM";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-624 basu168 BSGatlas operon 556763 557449 . + . ID=BSGatlas-operon-267;color=#FF00CC basu168 BSGatlas gene 556763 557449 . + . ID=BSGatlas-gene-625;color=#1E90FF;Name=yddT;locus_tag=BSU05100,BSU_05100;Parent=BSGatlas-operon-267 basu168 BSGatlas transcript 556763 557449 . + . ID=BSGatlas-transcript-579;color=#FF9900;Parent=BSGatlas-operon-267,BSGatlas-gene-625;comment="Based on: SubtiWiki" basu168 BSGatlas CDS 556763 557449 . + 0 ID=BSGatlas-gene-625_transcribed;color=#1E90FF;Name=yddT;Parent=BSGatlas-transcript-579;comment="putative exported phage protein";synonyms="yddT";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-625 basu168 BSGatlas exon 556763 557449 . + . ID=BSGatlas-transcript-579_exon;Parent=BSGatlas-transcript-579 basu168 BSGatlas operon 557818 558079 . + . ID=BSGatlas-operon-268;color=#FF00CC basu168 BSGatlas transcript 557818 558079 . + . ID=BSGatlas-transcript-580;color=#FF9900;Parent=BSGatlas-operon-268,BSGatlas-gene-626;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-414 basu168 BSGatlas exon 557818 558079 . + . ID=BSGatlas-transcript-580_exon;Parent=BSGatlas-transcript-580 basu168 BSGatlas UTR 557818 557872 . + . ID=BSGatlas-5'UTR-342;Parent=BSGatlas-transcript-580;comment="5'UTR" basu168 BSGatlas TSS 557818 557818 . + . ID=BSGatlas-TSS-414;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 557873 558058 . + . ID=BSGatlas-gene-626;color=#1E90FF;Name=ydzN;locus_tag=BSU05109,BSU_05109;Parent=BSGatlas-operon-268 basu168 BSGatlas CDS 557873 558058 . + 0 ID=BSGatlas-gene-626_transcribed;color=#1E90FF;Name=ydzN;Parent=BSGatlas-transcript-580;comment="hypothetical protein";synonyms="ydzN";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-626 basu168 BSGatlas terminator 558035 558079 . + . ID=BSGatlas-terminator-306;Parent=BSGatlas-transcript-580;comment="Based on: Nicolas et al. downshift, Energy: -12.8[kcal/mol]" basu168 BSGatlas UTR 558059 558079 . + . ID=BSGatlas-3'UTR-199;Parent=BSGatlas-transcript-580;comment="3'UTR" basu168 BSGatlas gene 558408 559001 . + . ID=BSGatlas-gene-627;color=#1E90FF;Name=sufLC;locus_tag=BSU05110,BSU_05110 basu168 BSGatlas CDS 558408 559001 . + 0 ID=BSGatlas-gene-627_transcribed;color=#1E90FF;Name=sufLC;comment="glyoxalase III homolog, deglycase";synonyms="ydeA";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.8 Resistance against oxidative and electrophile stress";ec="EC-4.2.1.130";go="GO:0006508 proteolysis,GO:0008233 peptidase activity,GO:0016787 hydrolase activity,GO:0051596 methylglyoxal catabolic process";derives_from=BSGatlas-gene-627 basu168 BSGatlas operon 559146 559512 . + . ID=BSGatlas-operon-269;color=#FF00CC basu168 BSGatlas transcript 559146 559490 . + . ID=BSGatlas-transcript-582;color=#FF9900;Parent=BSGatlas-operon-269,BSGatlas-gene-629;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-415 basu168 BSGatlas exon 559146 559490 . + . ID=BSGatlas-transcript-582_exon;Parent=BSGatlas-transcript-582 basu168 BSGatlas transcript 559146 559464 . + . ID=BSGatlas-transcript-581;color=#FF9900;Parent=BSGatlas-operon-269,BSGatlas-gene-629;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-415 basu168 BSGatlas exon 559146 559464 . + . ID=BSGatlas-transcript-581_exon;Parent=BSGatlas-transcript-581 basu168 BSGatlas UTR 559146 559263 . + . ID=BSGatlas-5'UTR-343;Parent=BSGatlas-transcript-581,BSGatlas-transcript-582;comment="5'UTR" basu168 BSGatlas TSS 559146 559146 . + . ID=BSGatlas-TSS-415;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 559159 559610 . - . ID=BSGatlas-operon-270;color=#B32496 basu168 BSGatlas transcript 559159 559610 . - . ID=BSGatlas-transcript-583;color=#B37924;Parent=BSGatlas-operon-270,BSGatlas-gene-630;comment="Based on: BSGatlas" basu168 BSGatlas exon 559159 559610 . - . ID=BSGatlas-transcript-583_exon;Parent=BSGatlas-transcript-583 basu168 BSGatlas UTR 559159 559531 . - . ID=BSGatlas-3'UTR-200;Parent=BSGatlas-transcript-583;comment="3'UTR" basu168 BSGatlas terminator 559159 559203 . - . ID=BSGatlas-terminator-307;Parent=BSGatlas-transcript-583;comment="Based on: Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas gene 559182 559512 . + . ID=BSGatlas-gene-628;color=#999999;Name=cspA;Parent=BSGatlas-operon-269 basu168 BSGatlas transcript 559182 559512 . + . ID=BSGatlas-transcript-584;color=#FF9900;Parent=BSGatlas-operon-269,BSGatlas-gene-628,BSGatlas-gene-629;comment="Based on: SubtiWiki" basu168 BSGatlas transcript 559182 559512 . + . ID=BSGatlas-transcript-585;color=#FF9900;Parent=BSGatlas-operon-269,BSGatlas-gene-628,BSGatlas-gene-629;comment="Based on: SubtiWiki" basu168 BSGatlas riboswitch 559182 559512 . + . ID=BSGatlas-gene-628_transcribed;color=#999999;Name=cspA;Parent=BSGatlas-transcript-584,BSGatlas-transcript-585;derives_from=BSGatlas-gene-628 basu168 BSGatlas exon 559182 559512 . + . ID=BSGatlas-transcript-584_exon;Parent=BSGatlas-transcript-584 basu168 BSGatlas exon 559182 559512 . + . ID=BSGatlas-transcript-585_exon;Parent=BSGatlas-transcript-585 basu168 BSGatlas gene 559264 559464 . + . ID=BSGatlas-gene-629;color=#1E90FF;Name=cspC;locus_tag=BSU05120,BSU_05120;Parent=BSGatlas-operon-269 basu168 BSGatlas CDS 559264 559464 . + 0 ID=BSGatlas-gene-629_transcribed;color=#1E90FF;Name=cspC;Parent=BSGatlas-transcript-581,BSGatlas-transcript-582,BSGatlas-transcript-584,BSGatlas-transcript-585;comment="cold-shock protein";synonyms="cspC";subtiwiki_category="SW 3 Information processing,SW 3.2 RNA synthesis and degradation,SW 3.2.2 RNA chaperones,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.5 Cold stress proteins";go="GO:0003676 nucleic acid binding,GO:0003677 DNA binding,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0006950 response to stress";derives_from=BSGatlas-gene-629 basu168 BSGatlas transcript 559329 559610 . - . ID=BSGatlas-transcript-586;color=#B37924;Parent=BSGatlas-operon-270,BSGatlas-gene-630;comment="Based on: BSGatlas" basu168 BSGatlas exon 559329 559610 . - . ID=BSGatlas-transcript-586_exon;Parent=BSGatlas-transcript-586 basu168 BSGatlas UTR 559329 559531 . - . ID=BSGatlas-3'UTR-201;Parent=BSGatlas-transcript-586;comment="3'UTR" basu168 BSGatlas terminator 559329 559395 . - . ID=BSGatlas-terminator-308;Parent=BSGatlas-transcript-586;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas terminator 559345 559389 . + . ID=BSGatlas-terminator-309;Parent=BSGatlas-transcript-581,BSGatlas-transcript-585;comment="Based on: Nicolas et al. downshift, Energy: -11.3[kcal/mol]" basu168 BSGatlas terminator 559446 559490 . + . ID=BSGatlas-terminator-310;Parent=BSGatlas-transcript-582,BSGatlas-transcript-584;comment="Based on: Nicolas et al. downshift, Energy: -11.3[kcal/mol]" basu168 BSGatlas UTR 559465 559490 . + . ID=BSGatlas-3'UTR-202;Parent=BSGatlas-transcript-582,BSGatlas-transcript-584;comment="3'UTR" basu168 BSGatlas gene 559532 559610 . - . ID=BSGatlas-gene-630;color=#8F1D1D;Name=S180_sncZ;locus_tag=new_559362_560150_c,BSU_misc_RNA_66;Parent=BSGatlas-operon-270 basu168 BSGatlas ncRNA 559532 559610 . - . ID=BSGatlas-gene-630_transcribed;color=#8F1D1D;Name=S180_sncZ;Parent=BSGatlas-transcript-583,BSGatlas-transcript-586;comment="putative small conserved untranslated RNA";synonyms="S180";derives_from=BSGatlas-gene-630 basu168 BSGatlas gene 559893 559980 . + . ID=BSGatlas-gene-631;color=#00FF00;Name=BsrC basu168 BSGatlas sRNA 559893 559980 . + . ID=BSGatlas-gene-631_transcribed;color=#00FF00;Name=BsrC;derives_from=BSGatlas-gene-631 basu168 BSGatlas operon 560151 560664 . - . ID=BSGatlas-operon-271;color=#B32496 basu168 BSGatlas transcript 560151 560664 . - . ID=BSGatlas-transcript-587;color=#B37924;Parent=BSGatlas-operon-271,BSGatlas-gene-632;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-416 basu168 BSGatlas exon 560151 560664 . - . ID=BSGatlas-transcript-587_exon;Parent=BSGatlas-transcript-587 basu168 BSGatlas gene 560151 560612 . - . ID=BSGatlas-gene-632;color=#3474B3;Name=cdnL;locus_tag=BSU05130,BSU_05130;Parent=BSGatlas-operon-271 basu168 BSGatlas CDS 560151 560612 . - 0 ID=BSGatlas-gene-632_transcribed;color=#3474B3;Name=cdnL;Parent=BSGatlas-transcript-587;comment="transcriptional regulator for repair andoutgrowth of heat damaged spores";synonyms="ydeB";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";derives_from=BSGatlas-gene-632 basu168 BSGatlas UTR 560613 560664 . - . ID=BSGatlas-5'UTR-344;Parent=BSGatlas-transcript-587;comment="5'UTR" basu168 BSGatlas TSS 560664 560664 . - . ID=BSGatlas-TSS-416;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 560674 561156 . + . ID=BSGatlas-operon-272;color=#FF00CC basu168 BSGatlas gene 560674 561156 . + . ID=BSGatlas-gene-633;color=#CC0000;Name=S181;locus_tag=new_560621_561166;Parent=BSGatlas-operon-272 basu168 BSGatlas transcript 560674 561156 . + . ID=BSGatlas-transcript-588;color=#FF9900;Parent=BSGatlas-operon-272,BSGatlas-gene-633;comment="Based on: BSGatlas" basu168 BSGatlas ncRNA 560674 561156 . + . ID=BSGatlas-gene-633_transcribed;color=#CC0000;Name=S181;Parent=BSGatlas-transcript-588;synonyms="S181";derives_from=BSGatlas-gene-633 basu168 BSGatlas exon 560674 561156 . + . ID=BSGatlas-transcript-588_exon;Parent=BSGatlas-transcript-588 basu168 BSGatlas terminator 561111 561155 . + . ID=BSGatlas-terminator-311;Parent=BSGatlas-transcript-588;comment="Based on: Nicolas et al. downshift, Energy: -9.5[kcal/mol]" basu168 BSGatlas operon 561180 562523 . - . ID=BSGatlas-operon-273;color=#B32496 basu168 BSGatlas transcript 561180 562523 . - . ID=BSGatlas-transcript-589;color=#B37924;Parent=BSGatlas-operon-273,BSGatlas-gene-635,BSGatlas-gene-634;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-417 basu168 BSGatlas exon 561180 562523 . - . ID=BSGatlas-transcript-589_exon;Parent=BSGatlas-transcript-589 basu168 BSGatlas gene 561180 561416 . - . ID=BSGatlas-gene-634;color=#3474B3;Name=ydzE;locus_tag=BSU05140,BSU_05140;Parent=BSGatlas-operon-273 basu168 BSGatlas CDS 561180 561416 . - 0 ID=BSGatlas-gene-634_transcribed;color=#3474B3;Name=ydzE;Parent=BSGatlas-transcript-589;comment="putative permease";synonyms="ydzE";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-634 basu168 BSGatlas UTR 561417 561513 . - . ID=BSGatlas-internal_UTR-186;Parent=BSGatlas-transcript-589;comment="internal_UTR" basu168 BSGatlas gene 561514 562389 . - . ID=BSGatlas-gene-635;color=#3474B3;Name=ydeC;locus_tag=BSU05150,BSU_05150;Parent=BSGatlas-operon-273 basu168 BSGatlas CDS 561514 562389 . - 0 ID=BSGatlas-gene-635_transcribed;color=#3474B3;Name=ydeC;Parent=BSGatlas-transcript-589;comment="putative transcriptional regulator (AraC/XylSfamily)";synonyms="ydeC";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB)";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-635 basu168 BSGatlas UTR 562390 562523 . - . ID=BSGatlas-5'UTR-345;Parent=BSGatlas-transcript-589;comment="5'UTR" basu168 BSGatlas operon 562502 563461 . + . ID=BSGatlas-operon-274;color=#FF00CC basu168 BSGatlas gene 562502 563461 . + . ID=BSGatlas-gene-636;color=#1E90FF;Name=ydeD;locus_tag=BSU05160,BSU_05160;Parent=BSGatlas-operon-274 basu168 BSGatlas transcript 562502 563461 . + . ID=BSGatlas-transcript-590;color=#FF9900;Parent=BSGatlas-operon-274,BSGatlas-gene-636;comment="Based on: BsubCyc" basu168 BSGatlas CDS 562502 563461 . + 0 ID=BSGatlas-gene-636_transcribed;color=#1E90FF;Name=ydeD;Parent=BSGatlas-transcript-590;comment="putative permease";synonyms="ydeD";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-636 basu168 BSGatlas exon 562502 563461 . + . ID=BSGatlas-transcript-590_exon;Parent=BSGatlas-transcript-590 basu168 BSGatlas TSS 562523 562523 . - . ID=BSGatlas-TSS-417;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 563614 564591 . - . ID=BSGatlas-operon-275;color=#B32496 basu168 BSGatlas transcript 563614 564591 . - . ID=BSGatlas-transcript-591;color=#B37924;Parent=BSGatlas-operon-275,BSGatlas-gene-637;comment="Based on: BsubCyc";transcribed_from=BSGatlas-TSS-418 basu168 BSGatlas exon 563614 564591 . - . ID=BSGatlas-transcript-591_exon;Parent=BSGatlas-transcript-591 basu168 BSGatlas gene 563614 564486 . - . ID=BSGatlas-gene-637;color=#3474B3;Name=ydeE;locus_tag=BSU05170,BSU_05170;Parent=BSGatlas-operon-275 basu168 BSGatlas CDS 563614 564486 . - 0 ID=BSGatlas-gene-637_transcribed;color=#3474B3;Name=ydeE;Parent=BSGatlas-transcript-591;comment="putative transcriptional regulator (AraC/XylSfamily)";synonyms="ydeE";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-637 basu168 BSGatlas UTR 564487 564591 . - . ID=BSGatlas-5'UTR-346;Parent=BSGatlas-transcript-591;comment="5'UTR" basu168 BSGatlas TSS 564591 564591 . - . ID=BSGatlas-TSS-418;color=#B32424;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 564674 566101 . + . ID=BSGatlas-operon-276;color=#FF00CC basu168 BSGatlas transcript 564674 566101 . + . ID=BSGatlas-transcript-592;color=#FF9900;Parent=BSGatlas-operon-276,BSGatlas-gene-638;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-419 basu168 BSGatlas exon 564674 566101 . + . ID=BSGatlas-transcript-592_exon;Parent=BSGatlas-transcript-592 basu168 BSGatlas UTR 564674 564712 . + . ID=BSGatlas-5'UTR-347;Parent=BSGatlas-transcript-592;comment="5'UTR" basu168 BSGatlas TSS 564674 564674 . + . ID=BSGatlas-TSS-419;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 564713 566101 . + . ID=BSGatlas-gene-638;color=#1E90FF;Name=ydeF;locus_tag=BSU05180,BSU_05180;Parent=BSGatlas-operon-276 basu168 BSGatlas CDS 564713 566101 . + 0 ID=BSGatlas-gene-638_transcribed;color=#1E90FF;Name=ydeF;Parent=BSGatlas-transcript-592;comment="putative PLP-dependent transcriptionalregulator";synonyms="ydeF";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0003824 catalytic activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008483 transaminase activity,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-638 basu168 BSGatlas terminator 566055 566099 . + . ID=BSGatlas-terminator-312;Parent=BSGatlas-transcript-592;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas gene 566211 567503 . + . ID=BSGatlas-gene-639;color=#1E90FF;Name=ydeG;locus_tag=BSU05190,BSU_05190 basu168 BSGatlas CDS 566211 567503 . + 0 ID=BSGatlas-gene-639_transcribed;color=#1E90FF;Name=ydeG;comment="putative permease";synonyms="ydeG";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-639 basu168 BSGatlas operon 567540 568159 . + . ID=BSGatlas-operon-277;color=#FF00CC basu168 BSGatlas transcript 567540 568159 . + . ID=BSGatlas-transcript-593;color=#FF9900;Parent=BSGatlas-operon-277,BSGatlas-gene-640;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-420 basu168 BSGatlas exon 567540 568159 . + . ID=BSGatlas-transcript-593_exon;Parent=BSGatlas-transcript-593 basu168 BSGatlas UTR 567540 567661 . + . ID=BSGatlas-5'UTR-348;Parent=BSGatlas-transcript-593;comment="5'UTR" basu168 BSGatlas TSS 567540 567540 . + . ID=BSGatlas-TSS-420;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 567662 568108 . + . ID=BSGatlas-gene-640;color=#1E90FF;Name=ydeH;locus_tag=BSU05200,BSU_05200;Parent=BSGatlas-operon-277 basu168 BSGatlas CDS 567662 568108 . + 0 ID=BSGatlas-gene-640_transcribed;color=#1E90FF;Name=ydeH;Parent=BSGatlas-transcript-593;comment="putative integral inner membrane protein";synonyms="ydeH";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-640 basu168 BSGatlas UTR 568109 568159 . + . ID=BSGatlas-3'UTR-203;Parent=BSGatlas-transcript-593;comment="3'UTR" basu168 BSGatlas terminator 568115 568159 . + . ID=BSGatlas-terminator-313;Parent=BSGatlas-transcript-593;comment="Based on: Nicolas et al. downshift, Energy: -4.5[kcal/mol]" basu168 BSGatlas operon 568211 569003 . + . ID=BSGatlas-operon-278;color=#FF00CC basu168 BSGatlas transcript 568211 569003 . + . ID=BSGatlas-transcript-594;color=#FF9900;Parent=BSGatlas-operon-278,BSGatlas-gene-641;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-421 basu168 BSGatlas exon 568211 569003 . + . ID=BSGatlas-transcript-594_exon;Parent=BSGatlas-transcript-594 basu168 BSGatlas UTR 568211 568344 . + . ID=BSGatlas-5'UTR-349;Parent=BSGatlas-transcript-594;comment="5'UTR" basu168 BSGatlas TSS 568211 568211 . + . ID=BSGatlas-TSS-421;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 568345 568938 . + . ID=BSGatlas-gene-641;color=#1E90FF;Name=ydeI;locus_tag=BSU05210,BSU_05210;Parent=BSGatlas-operon-278 basu168 BSGatlas CDS 568345 568938 . + 0 ID=BSGatlas-gene-641_transcribed;color=#1E90FF;Name=ydeI;Parent=BSGatlas-transcript-594;comment="conserved hypothetical protein";synonyms="ydeI";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-641 basu168 BSGatlas UTR 568939 569003 . + . ID=BSGatlas-3'UTR-204;Parent=BSGatlas-transcript-594;comment="3'UTR" basu168 BSGatlas terminator 568959 569003 . + . ID=BSGatlas-terminator-314;Parent=BSGatlas-transcript-594;comment="Based on: Nicolas et al. downshift, Energy: -6.9[kcal/mol]" basu168 BSGatlas operon 569035 570005 . - . ID=BSGatlas-operon-279;color=#B32496 basu168 BSGatlas transcript 569035 570005 . - . ID=BSGatlas-transcript-595;color=#B37924;Parent=BSGatlas-operon-279,BSGatlas-gene-642;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-423 basu168 BSGatlas exon 569035 570005 . - . ID=BSGatlas-transcript-595_exon;Parent=BSGatlas-transcript-595 basu168 BSGatlas UTR 569035 569289 . - . ID=BSGatlas-3'UTR-205;Parent=BSGatlas-transcript-595;comment="3'UTR" basu168 BSGatlas terminator 569035 569079 . - . ID=BSGatlas-terminator-315;Parent=BSGatlas-transcript-595;comment="Based on: Nicolas et al. downshift, Energy: -6.9[kcal/mol]" basu168 BSGatlas TSS 569091 569091 . + . ID=BSGatlas-TSS-422;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 569290 569949 . - . ID=BSGatlas-gene-642;color=#3474B3;Name=ydeJ;locus_tag=BSU05220,BSU_05220;Parent=BSGatlas-operon-279 basu168 BSGatlas CDS 569290 569949 . - 0 ID=BSGatlas-gene-642_transcribed;color=#3474B3;Name=ydeJ;Parent=BSGatlas-transcript-595;comment="putative lipoprotein";synonyms="ydeJ";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane";derives_from=BSGatlas-gene-642 basu168 BSGatlas UTR 569950 570005 . - . ID=BSGatlas-5'UTR-350;Parent=BSGatlas-transcript-595;comment="5'UTR" basu168 BSGatlas TSS 570005 570005 . - . ID=BSGatlas-TSS-423;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 570371 571323 . - . ID=BSGatlas-operon-280;color=#B32496 basu168 BSGatlas transcript 570371 571323 . - . ID=BSGatlas-transcript-596;color=#B37924;Parent=BSGatlas-operon-280,BSGatlas-gene-643;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-425 basu168 BSGatlas exon 570371 571323 . - . ID=BSGatlas-transcript-596_exon;Parent=BSGatlas-transcript-596 basu168 BSGatlas gene 570371 571234 . - . ID=BSGatlas-gene-643;color=#3474B3;Name=ydeK;locus_tag=BSU05230,BSU_05230;Parent=BSGatlas-operon-280 basu168 BSGatlas CDS 570371 571234 . - 0 ID=BSGatlas-gene-643_transcribed;color=#3474B3;Name=ydeK;Parent=BSGatlas-transcript-596;comment="putative permease";synonyms="ydeK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-643 basu168 BSGatlas UTR 571235 571323 . - . ID=BSGatlas-5'UTR-351;Parent=BSGatlas-transcript-596;comment="5'UTR" basu168 BSGatlas operon 571313 572780 . + . ID=BSGatlas-operon-281;color=#FF00CC basu168 BSGatlas transcript 571313 572780 . + . ID=BSGatlas-transcript-597;color=#FF9900;Parent=BSGatlas-operon-281,BSGatlas-gene-644;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-424 basu168 BSGatlas exon 571313 572780 . + . ID=BSGatlas-transcript-597_exon;Parent=BSGatlas-transcript-597 basu168 BSGatlas UTR 571313 571388 . + . ID=BSGatlas-5'UTR-352;Parent=BSGatlas-transcript-597;comment="5'UTR" basu168 BSGatlas TSS 571313 571313 . + . ID=BSGatlas-TSS-424;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 571323 571323 . - . ID=BSGatlas-TSS-425;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 571389 572780 . + . ID=BSGatlas-gene-644;color=#1E90FF;Name=ydeL;locus_tag=BSU05240,BSU_05240;Parent=BSGatlas-operon-281 basu168 BSGatlas CDS 571389 572780 . + 0 ID=BSGatlas-gene-644_transcribed;color=#1E90FF;Name=ydeL;Parent=BSGatlas-transcript-597;comment="putative PLP-dependent transcriptionalregulator";synonyms="ydeL";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0003824 catalytic activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008483 transaminase activity,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-644 basu168 BSGatlas operon 572940 573399 . + . ID=BSGatlas-operon-282;color=#FF00CC basu168 BSGatlas transcript 572940 573399 . + . ID=BSGatlas-transcript-598;color=#FF9900;Parent=BSGatlas-operon-282,BSGatlas-gene-645;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-426 basu168 BSGatlas exon 572940 573399 . + . ID=BSGatlas-transcript-598_exon;Parent=BSGatlas-transcript-598 basu168 BSGatlas UTR 572940 572973 . + . ID=BSGatlas-5'UTR-353;Parent=BSGatlas-transcript-598;comment="5'UTR" basu168 BSGatlas TSS 572940 572940 . + . ID=BSGatlas-TSS-426;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 572974 573399 . + . ID=BSGatlas-gene-645;color=#1E90FF;Name=ydeM;locus_tag=BSU05250,BSU_05250;Parent=BSGatlas-operon-282 basu168 BSGatlas CDS 572974 573399 . + 0 ID=BSGatlas-gene-645_transcribed;color=#1E90FF;Name=ydeM;Parent=BSGatlas-transcript-598;comment="putative dehydratase";synonyms="ydeM";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-645 basu168 BSGatlas operon 573435 574469 . - . ID=BSGatlas-operon-283;color=#B32496 basu168 BSGatlas transcript 573435 574469 . - . ID=BSGatlas-transcript-599;color=#B37924;Parent=BSGatlas-operon-283,BSGatlas-gene-647,BSGatlas-gene-646;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-427 basu168 BSGatlas exon 573435 574469 . - . ID=BSGatlas-transcript-599_exon;Parent=BSGatlas-transcript-599 basu168 BSGatlas terminator 573435 573479 . - . ID=BSGatlas-terminator-316;Parent=BSGatlas-transcript-599;comment="Based on: Nicolas et al. downshift, Energy: -11.3[kcal/mol]" basu168 BSGatlas UTR 573435 573451 . - . ID=BSGatlas-3'UTR-206;Parent=BSGatlas-transcript-599;comment="3'UTR" basu168 BSGatlas gene 573452 574024 . - . ID=BSGatlas-gene-646;color=#3474B3;Name=ydeN;locus_tag=BSU05260,BSU_05260;Parent=BSGatlas-operon-283 basu168 BSGatlas CDS 573452 574024 . - 0 ID=BSGatlas-gene-646_transcribed;color=#3474B3;Name=ydeN;Parent=BSGatlas-transcript-599;comment="putative alpha/beta hydrolase";synonyms="ydeN";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";ec="3.-.-.-";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity";derives_from=BSGatlas-gene-646 basu168 BSGatlas UTR 574025 574105 . - . ID=BSGatlas-internal_UTR-187;Parent=BSGatlas-transcript-599;comment="internal_UTR" basu168 BSGatlas gene 574106 574435 . - . ID=BSGatlas-gene-647;color=#3474B3;Name=ydzF;locus_tag=BSU05270,BSU_05270;Parent=BSGatlas-operon-283 basu168 BSGatlas CDS 574106 574435 . - 0 ID=BSGatlas-gene-647_transcribed;color=#3474B3;Name=ydzF;Parent=BSGatlas-transcript-599;comment="putative transcriptional regulator";synonyms="ydzF";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-647 basu168 BSGatlas UTR 574436 574469 . - . ID=BSGatlas-5'UTR-354;Parent=BSGatlas-transcript-599;comment="5'UTR" basu168 BSGatlas TSS 574469 574469 . - . ID=BSGatlas-TSS-427;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 574656 575669 . + . ID=BSGatlas-operon-284;color=#FF00CC basu168 BSGatlas transcript 574656 575669 . + . ID=BSGatlas-transcript-601;color=#FF9900;Parent=BSGatlas-operon-284,BSGatlas-gene-648;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-428 basu168 BSGatlas exon 574656 575669 . + . ID=BSGatlas-transcript-601_exon;Parent=BSGatlas-transcript-601 basu168 BSGatlas transcript 574656 575562 . + . ID=BSGatlas-transcript-600;color=#FF9900;Parent=BSGatlas-operon-284,BSGatlas-gene-648;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-428 basu168 BSGatlas exon 574656 575562 . + . ID=BSGatlas-transcript-600_exon;Parent=BSGatlas-transcript-600 basu168 BSGatlas UTR 574656 574689 . + . ID=BSGatlas-5'UTR-355;Parent=BSGatlas-transcript-600,BSGatlas-transcript-601;comment="5'UTR" basu168 BSGatlas TSS 574656 574656 . + . ID=BSGatlas-TSS-428;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 574690 575562 . + . ID=BSGatlas-gene-648;color=#1E90FF;Name=ydeO;locus_tag=BSU05280,BSU_05280;Parent=BSGatlas-operon-284 basu168 BSGatlas CDS 574690 575562 . + 0 ID=BSGatlas-gene-648_transcribed;color=#1E90FF;Name=ydeO;Parent=BSGatlas-transcript-600,BSGatlas-transcript-601;comment="putative integral inner membrane protein";synonyms="ydeO";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-648 basu168 BSGatlas terminator 575427 575471 . + . ID=BSGatlas-terminator-317;Parent=BSGatlas-transcript-600;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas UTR 575563 575669 . + . ID=BSGatlas-3'UTR-207;Parent=BSGatlas-transcript-601;comment="3'UTR" basu168 BSGatlas terminator 575625 575669 . + . ID=BSGatlas-terminator-318;Parent=BSGatlas-transcript-601;comment="Based on: Nicolas et al. downshift, Energy: -12.2[kcal/mol]" basu168 BSGatlas terminator 575702 575746 . - . ID=BSGatlas-terminator-319;Parent=BSGatlas-transcript-602;comment="Based on: Nicolas et al. downshift, Energy: -12.9[kcal/mol]" basu168 BSGatlas operon 575712 576165 . - . ID=BSGatlas-operon-285;color=#B32496 basu168 BSGatlas transcript 575712 576165 . - . ID=BSGatlas-transcript-602;color=#B37924;Parent=BSGatlas-operon-285,BSGatlas-gene-649;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-429 basu168 BSGatlas exon 575712 576165 . - . ID=BSGatlas-transcript-602_exon;Parent=BSGatlas-transcript-602 basu168 BSGatlas gene 575712 576098 . - . ID=BSGatlas-gene-649;color=#3474B3;Name=ydeP;locus_tag=BSU05290,BSU_05290;Parent=BSGatlas-operon-285 basu168 BSGatlas CDS 575712 576098 . - 0 ID=BSGatlas-gene-649_transcribed;color=#3474B3;Name=ydeP;Parent=BSGatlas-transcript-602;comment="putative transcriptional regulator";synonyms="ydeP";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-649 basu168 BSGatlas UTR 576099 576165 . - . ID=BSGatlas-5'UTR-356;Parent=BSGatlas-transcript-602;comment="5'UTR" basu168 BSGatlas TSS 576165 576165 . - . ID=BSGatlas-TSS-429;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 576175 576802 . + . ID=BSGatlas-operon-286;color=#FF00CC basu168 BSGatlas transcript 576175 576802 . + . ID=BSGatlas-transcript-603;color=#FF9900;Parent=BSGatlas-operon-286,BSGatlas-gene-650;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-430 basu168 BSGatlas exon 576175 576802 . + . ID=BSGatlas-transcript-603_exon;Parent=BSGatlas-transcript-603 basu168 BSGatlas UTR 576175 576208 . + . ID=BSGatlas-5'UTR-357;Parent=BSGatlas-transcript-603;comment="5'UTR" basu168 BSGatlas TSS 576175 576175 . + . ID=BSGatlas-TSS-430;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 576209 576802 . + . ID=BSGatlas-gene-650;color=#1E90FF;Name=ydeQ;locus_tag=BSU05300,BSU_05300;Parent=BSGatlas-operon-286 basu168 BSGatlas CDS 576209 576802 . + 0 ID=BSGatlas-gene-650_transcribed;color=#1E90FF;Name=ydeQ;Parent=BSGatlas-transcript-603;comment="putative NAD(P)H oxidoreductase involved inregulating potassium efflux";synonyms="ydeQ";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.4 Electron transport/ other/ based on similarity";ec="1.6.99.-";go="GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-650 basu168 BSGatlas operon 576946 578133 . - . ID=BSGatlas-operon-287;color=#B32496 basu168 BSGatlas gene 576946 578133 . - . ID=BSGatlas-gene-651;color=#3474B3;Name=ydeR;locus_tag=BSU05310,BSU_05310;Parent=BSGatlas-operon-287 basu168 BSGatlas transcript 576946 578133 . - . ID=BSGatlas-transcript-604;color=#B37924;Parent=BSGatlas-operon-287,BSGatlas-gene-651;comment="Based on: BsubCyc" basu168 BSGatlas CDS 576946 578133 . - 0 ID=BSGatlas-gene-651_transcribed;color=#3474B3;Name=ydeR;Parent=BSGatlas-transcript-604;comment="putative efflux transporter";synonyms="ydeR";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-651 basu168 BSGatlas exon 576946 578133 . - . ID=BSGatlas-transcript-604_exon;Parent=BSGatlas-transcript-604 basu168 BSGatlas operon 578287 579232 . + . ID=BSGatlas-operon-288;color=#FF00CC basu168 BSGatlas transcript 578287 579232 . + . ID=BSGatlas-transcript-605;color=#FF9900;Parent=BSGatlas-operon-288,BSGatlas-gene-652,BSGatlas-gene-653;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-431 basu168 BSGatlas exon 578287 579232 . + . ID=BSGatlas-transcript-605_exon;Parent=BSGatlas-transcript-605 basu168 BSGatlas UTR 578287 578336 . + . ID=BSGatlas-5'UTR-358;Parent=BSGatlas-transcript-605;comment="5'UTR" basu168 BSGatlas TSS 578287 578287 . + . ID=BSGatlas-TSS-431;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 578337 578933 . + . ID=BSGatlas-gene-652;color=#1E90FF;Name=ydeS;locus_tag=BSU05320,BSU_05320;Parent=BSGatlas-operon-288 basu168 BSGatlas CDS 578337 578933 . + 0 ID=BSGatlas-gene-652_transcribed;color=#1E90FF;Name=ydeS;Parent=BSGatlas-transcript-605;comment="putative transcriptional regulator (TetR/AcrRfamily)";synonyms="ydeS";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-652 basu168 BSGatlas UTR 578934 579046 . + . ID=BSGatlas-internal_UTR-188;Parent=BSGatlas-transcript-605;comment="internal_UTR" basu168 BSGatlas gene 579047 579232 . + . ID=BSGatlas-gene-653;color=#1E90FF;Name=ydzO;locus_tag=BSU05329,BSU_05329;Parent=BSGatlas-operon-288 basu168 BSGatlas CDS 579047 579232 . + 0 ID=BSGatlas-gene-653_transcribed;color=#1E90FF;Name=ydzO;Parent=BSGatlas-transcript-605;comment="hypothetical protein";synonyms="ydzO";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-653 basu168 BSGatlas terminator 579189 579233 . + . ID=BSGatlas-terminator-320;Parent=BSGatlas-transcript-605;comment="Based on: Nicolas et al. downshift, Energy: -6.3[kcal/mol]" basu168 BSGatlas operon 579354 581763 . + . ID=BSGatlas-operon-289;color=#FF00CC basu168 BSGatlas transcript 579354 581763 . + . ID=BSGatlas-transcript-606;color=#FF9900;Parent=BSGatlas-operon-289,BSGatlas-gene-654,BSGatlas-gene-655,BSGatlas-gene-656,BSGatlas-gene-657;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-432 basu168 BSGatlas exon 579354 581763 . + . ID=BSGatlas-transcript-606_exon;Parent=BSGatlas-transcript-606 basu168 BSGatlas UTR 579354 579540 . + . ID=BSGatlas-5'UTR-359;Parent=BSGatlas-transcript-606;comment="5'UTR" basu168 BSGatlas TSS 579354 579354 . + . ID=BSGatlas-TSS-432;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 579541 579876 . + . ID=BSGatlas-gene-654;color=#1E90FF;Name=aseR;locus_tag=BSU05330,BSU_05330;Parent=BSGatlas-operon-289 basu168 BSGatlas CDS 579541 579876 . + 0 ID=BSGatlas-gene-654_transcribed;color=#1E90FF;Name=aseR;Parent=BSGatlas-transcript-606;comment="transcriptional regulator (metals sensingArsR-SmtB repressors family)";synonyms="aseR,ydeT";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.11 Resistance against toxic metals";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-654 basu168 BSGatlas gene 579889 581196 . + . ID=BSGatlas-gene-655;color=#1E90FF;Name=arsF;locus_tag=BSU05340,BSU_05340;Parent=BSGatlas-operon-289 basu168 BSGatlas CDS 579889 581196 . + 0 ID=BSGatlas-gene-655_transcribed;color=#1E90FF;Name=arsF;Parent=BSGatlas-transcript-606;comment="arsenite/antimonite/H+ antiporter";synonyms="aseA,ydfA";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.5 Metal ion transporter,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.11 Resistance against toxic metals";go="GO:0005886 plasma membrane,GO:0015105 arsenite transmembrane transporter activity,GO:0015700 arsenite transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034220 ion transmembrane transport,GO:0046685 response to arsenic-containing substance";derives_from=BSGatlas-gene-655 basu168 BSGatlas UTR 581197 581227 . + . ID=BSGatlas-internal_UTR-189;Parent=BSGatlas-transcript-606;comment="internal_UTR" basu168 BSGatlas gene 581228 581329 . + . ID=BSGatlas-gene-656;color=#1E90FF;Name=ydzSn;locus_tag=BSU05343,BSU_05343;Parent=BSGatlas-operon-289 basu168 BSGatlas CDS 581228 581329 . + 0 ID=BSGatlas-gene-656_transcribed;color=#1E90FF;Name=ydzSn;Parent=BSGatlas-transcript-606;comment="conserved hypothetical protein; N-terminal partof ydzS";synonyms="ydzS/1";subtiwiki_category="SW 6 Groups of genes,SW 6.10 Pseudogenes";derives_from=BSGatlas-gene-656 basu168 BSGatlas gene 581341 581454 . + . ID=BSGatlas-gene-657;color=#1E90FF;Name=ydzSc;locus_tag=BSU05344,BSU_05344;Parent=BSGatlas-operon-289 basu168 BSGatlas CDS 581341 581454 . + 0 ID=BSGatlas-gene-657_transcribed;color=#1E90FF;Name=ydzSc;Parent=BSGatlas-transcript-606;comment="conserved hypothetical protein; C-terminal partof ydzS";synonyms="ydzS/2";subtiwiki_category="SW 6 Groups of genes,SW 6.10 Pseudogenes";derives_from=BSGatlas-gene-657 basu168 BSGatlas UTR 581455 581763 . + . ID=BSGatlas-3'UTR-208;Parent=BSGatlas-transcript-606;comment="3'UTR" basu168 BSGatlas operon 581676 582511 . + . ID=BSGatlas-operon-290;color=#FF00CC basu168 BSGatlas transcript 581676 582511 . + . ID=BSGatlas-transcript-607;color=#FF9900;Parent=BSGatlas-operon-290,BSGatlas-gene-658;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-433 basu168 BSGatlas exon 581676 582511 . + . ID=BSGatlas-transcript-607_exon;Parent=BSGatlas-transcript-607 basu168 BSGatlas UTR 581676 581693 . + . ID=BSGatlas-5'UTR-360;Parent=BSGatlas-transcript-607;comment="5'UTR" basu168 BSGatlas TSS 581676 581676 . + . ID=BSGatlas-TSS-433;color=#FF0000;comment="Simga: H, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 581694 582479 . + . ID=BSGatlas-gene-658;color=#1E90FF;Name=ydfB;locus_tag=BSU05350,BSU_05350;Parent=BSGatlas-operon-290 basu168 BSGatlas CDS 581694 582479 . + 0 ID=BSGatlas-gene-658_transcribed;color=#1E90FF;Name=ydfB;Parent=BSGatlas-transcript-607;comment="putative acetyltransferase";synonyms="ydfB";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008080 N-acetyltransferase activity,GO:0008152 metabolic process,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups";derives_from=BSGatlas-gene-658 basu168 BSGatlas terminator 581719 581763 . + . ID=BSGatlas-terminator-321;Parent=BSGatlas-transcript-606;comment="Based on: Nicolas et al. downshift, Energy: -19.2[kcal/mol]" basu168 BSGatlas terminator 582467 582511 . + . ID=BSGatlas-terminator-322;Parent=BSGatlas-transcript-607;comment="Based on: Nicolas et al. downshift, Energy: -13.6[kcal/mol]" basu168 BSGatlas UTR 582480 582511 . + . ID=BSGatlas-3'UTR-209;Parent=BSGatlas-transcript-607;comment="3'UTR" basu168 BSGatlas operon 582536 583456 . - . ID=BSGatlas-operon-291;color=#B32496 basu168 BSGatlas gene 582536 583456 . - . ID=BSGatlas-gene-659;color=#3474B3;Name=ydfC;locus_tag=BSU05360,BSU_05360;Parent=BSGatlas-operon-291 basu168 BSGatlas transcript 582536 583456 . - . ID=BSGatlas-transcript-608;color=#B37924;Parent=BSGatlas-operon-291,BSGatlas-gene-659;comment="Based on: BsubCyc" basu168 BSGatlas CDS 582536 583456 . - 0 ID=BSGatlas-gene-659_transcribed;color=#3474B3;Name=ydfC;Parent=BSGatlas-transcript-608;comment="putative aminoacid exporter";synonyms="ydfC";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-659 basu168 BSGatlas exon 582536 583456 . - . ID=BSGatlas-transcript-608_exon;Parent=BSGatlas-transcript-608 basu168 BSGatlas operon 583589 585037 . + . ID=BSGatlas-operon-292;color=#FF00CC basu168 BSGatlas gene 583589 585037 . + . ID=BSGatlas-gene-660;color=#1E90FF;Name=ydfD;locus_tag=BSU05370,BSU_05370;Parent=BSGatlas-operon-292 basu168 BSGatlas transcript 583589 585037 . + . ID=BSGatlas-transcript-609;color=#FF9900;Parent=BSGatlas-operon-292,BSGatlas-gene-660;comment="Based on: BsubCyc" basu168 BSGatlas CDS 583589 585037 . + 0 ID=BSGatlas-gene-660_transcribed;color=#1E90FF;Name=ydfD;Parent=BSGatlas-transcript-609;comment="putative PLP-dependent transcriptionalregulator";synonyms="ydfD";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0003824 catalytic activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0008483 transaminase activity,GO:0009058 biosynthetic process,GO:0016740 transferase activity,GO:0030170 pyridoxal phosphate binding";derives_from=BSGatlas-gene-660 basu168 BSGatlas exon 583589 585037 . + . ID=BSGatlas-transcript-609_exon;Parent=BSGatlas-transcript-609 basu168 BSGatlas operon 585155 585821 . - . ID=BSGatlas-operon-293;color=#B32496 basu168 BSGatlas transcript 585155 585821 . - . ID=BSGatlas-transcript-610;color=#B37924;Parent=BSGatlas-operon-293,BSGatlas-gene-661;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-434 basu168 BSGatlas exon 585155 585821 . - . ID=BSGatlas-transcript-610_exon;Parent=BSGatlas-transcript-610 basu168 BSGatlas gene 585155 585778 . - . ID=BSGatlas-gene-661;color=#3474B3;Name=ydfE;locus_tag=BSU05380,BSU_05380;Parent=BSGatlas-operon-293 basu168 BSGatlas CDS 585155 585778 . - 0 ID=BSGatlas-gene-661_transcribed;color=#3474B3;Name=ydfE;Parent=BSGatlas-transcript-610;comment="putative flavoprotein";synonyms="ydfE";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0010181 FMN binding,GO:0016491 oxidoreductase activity,GO:0042602 riboflavin reductase (NADPH) activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-661 basu168 BSGatlas UTR 585779 585821 . - . ID=BSGatlas-5'UTR-361;Parent=BSGatlas-transcript-610;comment="5'UTR" basu168 BSGatlas TSS 585821 585821 . - . ID=BSGatlas-TSS-434;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 585834 586603 . + . ID=BSGatlas-operon-294;color=#FF00CC basu168 BSGatlas transcript 585834 586603 . + . ID=BSGatlas-transcript-611;color=#FF9900;Parent=BSGatlas-operon-294,BSGatlas-gene-662;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-435 basu168 BSGatlas exon 585834 586603 . + . ID=BSGatlas-transcript-611_exon;Parent=BSGatlas-transcript-611 basu168 BSGatlas UTR 585834 585867 . + . ID=BSGatlas-5'UTR-362;Parent=BSGatlas-transcript-611;comment="5'UTR" basu168 BSGatlas TSS 585834 585834 . + . ID=BSGatlas-TSS-435;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 585868 586548 . + . ID=BSGatlas-gene-662;color=#1E90FF;Name=ydfF;locus_tag=BSU05390,BSU_05390;Parent=BSGatlas-operon-294 basu168 BSGatlas CDS 585868 586548 . + 0 ID=BSGatlas-gene-662_transcribed;color=#1E90FF;Name=ydfF;Parent=BSGatlas-transcript-611;comment="putative transcriptional regulator";synonyms="ydfF";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-662 basu168 BSGatlas UTR 586549 586603 . + . ID=BSGatlas-3'UTR-210;Parent=BSGatlas-transcript-611;comment="3'UTR" basu168 BSGatlas terminator 586559 586603 . + . ID=BSGatlas-terminator-323;Parent=BSGatlas-transcript-611;comment="Based on: Nicolas et al. downshift, Energy: -4.5[kcal/mol]" basu168 BSGatlas operon 586611 587118 . - . ID=BSGatlas-operon-295;color=#B32496 basu168 BSGatlas transcript 586611 587118 . - . ID=BSGatlas-transcript-612;color=#B37924;Parent=BSGatlas-operon-295,BSGatlas-gene-663;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-436 basu168 BSGatlas exon 586611 587118 . - . ID=BSGatlas-transcript-612_exon;Parent=BSGatlas-transcript-612 basu168 BSGatlas terminator 586611 586655 . - . ID=BSGatlas-terminator-324;Parent=BSGatlas-transcript-612;comment="Based on: Nicolas et al. downshift, Energy: -10.8[kcal/mol]" basu168 BSGatlas UTR 586611 586627 . - . ID=BSGatlas-3'UTR-211;Parent=BSGatlas-transcript-612;comment="3'UTR" basu168 BSGatlas gene 586628 587071 . - . ID=BSGatlas-gene-663;color=#3474B3;Name=ydfG;locus_tag=BSU05400,BSU_05400;Parent=BSGatlas-operon-295 basu168 BSGatlas CDS 586628 587071 . - 0 ID=BSGatlas-gene-663_transcribed;color=#3474B3;Name=ydfG;Parent=BSGatlas-transcript-612;comment="conserved hypothetical protein";synonyms="ydfG";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0051920 peroxiredoxin activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-663 basu168 BSGatlas UTR 587072 587118 . - . ID=BSGatlas-5'UTR-363;Parent=BSGatlas-transcript-612;comment="5'UTR" basu168 BSGatlas TSS 587118 587118 . - . ID=BSGatlas-TSS-436;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 587157 587336 . - . ID=BSGatlas-gene-664;color=#3474B3;Name=ydzP;locus_tag=BSU05408,BSU_05408 basu168 BSGatlas CDS 587157 587336 . - 0 ID=BSGatlas-gene-664_transcribed;color=#3474B3;Name=ydzP;comment="hypothetical protein";synonyms="ydzP";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-664 basu168 BSGatlas gene 587333 587476 . - . ID=BSGatlas-gene-665;color=#3474B3;Name=ydzQ;locus_tag=BSU05409,BSU_05409 basu168 BSGatlas CDS 587333 587476 . - 0 ID=BSGatlas-gene-665_transcribed;color=#3474B3;Name=ydzQ;comment="hypothetical protein";synonyms="ydzQ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-665 basu168 BSGatlas operon 587461 589661 . + . ID=BSGatlas-operon-296;color=#FF00CC basu168 BSGatlas transcript 587461 589661 . + . ID=BSGatlas-transcript-613;color=#FF9900;Parent=BSGatlas-operon-296,BSGatlas-gene-666,BSGatlas-gene-667;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-437 basu168 BSGatlas exon 587461 589661 . + . ID=BSGatlas-transcript-613_exon;Parent=BSGatlas-transcript-613 basu168 BSGatlas UTR 587461 587743 . + . ID=BSGatlas-5'UTR-364;Parent=BSGatlas-transcript-613;comment="5'UTR" basu168 BSGatlas TSS 587461 587461 . + . ID=BSGatlas-TSS-437;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 587744 588967 . + . ID=BSGatlas-gene-666;color=#1E90FF;Name=ydfH;locus_tag=BSU05410,BSU_05410;Parent=BSGatlas-operon-296 basu168 BSGatlas CDS 587744 588967 . + 0 ID=BSGatlas-gene-666_transcribed;color=#1E90FF;Name=ydfH;Parent=BSGatlas-transcript-613;comment="two-component sensor histidine kinase [YdfI]";synonyms="ydfH";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.2 Protein kinases,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.2 Control of two-component response regulators,SW 3.4.2.2.1 Two-component sensor kinase,SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0000155 phosphorelay sensor kinase activity,GO:0000160 phosphorelay signal transduction system,GO:0000166 nucleotide binding,GO:0004673 protein histidine kinase activity,GO:0004871 NA,GO:0005524 ATP binding,GO:0005886 plasma membrane,GO:0007165 signal transduction,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0018106 peptidyl-histidine phosphorylation,GO:0023014 signal transduction by protein phosphorylation,GO:0031975 envelope,GO:0046983 protein dimerization activity";derives_from=BSGatlas-gene-666 basu168 BSGatlas gene 588960 589601 . + . ID=BSGatlas-gene-667;color=#1E90FF;Name=ydfI;locus_tag=BSU05420,BSU_05420;Parent=BSGatlas-operon-296 basu168 BSGatlas CDS 588960 589601 . + 0 ID=BSGatlas-gene-667_transcribed;color=#1E90FF;Name=ydfI;Parent=BSGatlas-transcript-613;comment="two-component response regulator [YdfH]";synonyms="ydfI";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.1 Two-component system response regulators,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.2 Phosphorylation on an Asp residue";go="GO:0000156 phosphorelay response regulator activity,GO:0000160 phosphorelay signal transduction system,GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005737 cytoplasm,GO:0005829 cytosol,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0035556 intracellular signal transduction";derives_from=BSGatlas-gene-667 basu168 BSGatlas UTR 589602 589661 . + . ID=BSGatlas-3'UTR-212;Parent=BSGatlas-transcript-613;comment="3'UTR" basu168 BSGatlas terminator 589612 589661 . + . ID=BSGatlas-terminator-325;Parent=BSGatlas-transcript-613;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -9.6[kcal/mol]" basu168 BSGatlas TSS 589649 589649 . - . ID=BSGatlas-TSS-438;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 589681 591936 . + . ID=BSGatlas-operon-297;color=#FF00CC basu168 BSGatlas transcript 589681 591936 . + . ID=BSGatlas-transcript-614;color=#FF9900;Parent=BSGatlas-operon-297,BSGatlas-gene-668;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-439 basu168 BSGatlas exon 589681 591936 . + . ID=BSGatlas-transcript-614_exon;Parent=BSGatlas-transcript-614 basu168 BSGatlas UTR 589681 589716 . + . ID=BSGatlas-5'UTR-365;Parent=BSGatlas-transcript-614;comment="5'UTR" basu168 BSGatlas TSS 589681 589681 . + . ID=BSGatlas-TSS-439;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 15941986,17962296" basu168 BSGatlas transcript 589717 591936 . + . ID=BSGatlas-transcript-615;color=#FF9900;Parent=BSGatlas-operon-297,BSGatlas-gene-668;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-440 basu168 BSGatlas exon 589717 591936 . + . ID=BSGatlas-transcript-615_exon;Parent=BSGatlas-transcript-615 basu168 BSGatlas gene 589717 591891 . + . ID=BSGatlas-gene-668;color=#1E90FF;Name=ydfJ;locus_tag=BSU05430,BSU_05430;Parent=BSGatlas-operon-297 basu168 BSGatlas CDS 589717 591891 . + 0 ID=BSGatlas-gene-668_transcribed;color=#1E90FF;Name=ydfJ;Parent=BSGatlas-transcript-614,BSGatlas-transcript-615;comment="putative proton metabolite efflux transporter";synonyms="ydfJ";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-668 basu168 BSGatlas TSS 589727 589727 . + . ID=BSGatlas-TSS-440;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas TSS 590793 590793 . - . ID=BSGatlas-TSS-441;color=#B32424;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 591885 591936 . + . ID=BSGatlas-terminator-326;Parent=BSGatlas-transcript-614,BSGatlas-transcript-615;comment="Based on: BsubCyc,DBTBS, Energy: -13.7[kcal/mol]" basu168 BSGatlas UTR 591892 591936 . + . ID=BSGatlas-3'UTR-213;Parent=BSGatlas-transcript-614,BSGatlas-transcript-615;comment="3'UTR" basu168 BSGatlas operon 591918 593301 . - . ID=BSGatlas-operon-298;color=#B32496 basu168 BSGatlas transcript 591918 593301 . - . ID=BSGatlas-transcript-616;color=#B37924;Parent=BSGatlas-operon-298,BSGatlas-gene-669;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-443 basu168 BSGatlas exon 591918 593301 . - . ID=BSGatlas-transcript-616_exon;Parent=BSGatlas-transcript-616 basu168 BSGatlas UTR 591918 592302 . - . ID=BSGatlas-3'UTR-214;Parent=BSGatlas-transcript-616;comment="3'UTR" basu168 BSGatlas terminator 591918 591962 . - . ID=BSGatlas-terminator-327;Parent=BSGatlas-transcript-616;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -8.8[kcal/mol]" basu168 BSGatlas TSS 591926 591926 . + . ID=BSGatlas-TSS-442;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 592196 593301 . - . ID=BSGatlas-transcript-617;color=#B37924;Parent=BSGatlas-operon-298,BSGatlas-gene-669;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-443 basu168 BSGatlas exon 592196 593301 . - . ID=BSGatlas-transcript-617_exon;Parent=BSGatlas-transcript-617 basu168 BSGatlas UTR 592196 592302 . - . ID=BSGatlas-3'UTR-215;Parent=BSGatlas-transcript-617;comment="3'UTR" basu168 BSGatlas terminator 592196 592238 . - . ID=BSGatlas-terminator-328;Parent=BSGatlas-transcript-617;comment="Based on: BsubCyc,DBTBS, Energy: -12.9[kcal/mol]" basu168 BSGatlas gene 592303 593205 . - . ID=BSGatlas-gene-669;color=#3474B3;Name=cesA;locus_tag=BSU05440,BSU_05440;Parent=BSGatlas-operon-298 basu168 BSGatlas CDS 592303 593205 . - 0 ID=BSGatlas-gene-669_transcribed;color=#3474B3;Name=cesA;Parent=BSGatlas-transcript-616,BSGatlas-transcript-617;comment="carboxylesterase NP";synonyms="cesA,nap";subtiwiki_category="SW 2 Metabolism,SW 2.4 Lipid metabolism,SW 2.4.1 Utilization of lipids,SW 2.4.1.4 Utilization of lipids/ other";ec="3.1.1.1,EC-3.1.1.1";go="GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0052689 carboxylic ester hydrolase activity";derives_from=BSGatlas-gene-669 basu168 BSGatlas UTR 593206 593301 . - . ID=BSGatlas-5'UTR-366;Parent=BSGatlas-transcript-616,BSGatlas-transcript-617;comment="5'UTR" basu168 BSGatlas TSS 593301 593301 . - . ID=BSGatlas-TSS-443;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 593370 594123 . - . ID=BSGatlas-operon-299;color=#B32496 basu168 BSGatlas transcript 593370 594123 . - . ID=BSGatlas-transcript-618;color=#B37924;Parent=BSGatlas-operon-299,BSGatlas-gene-670;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-444 basu168 BSGatlas exon 593370 594123 . - . ID=BSGatlas-transcript-618_exon;Parent=BSGatlas-transcript-618 basu168 BSGatlas UTR 593370 593406 . - . ID=BSGatlas-3'UTR-216;Parent=BSGatlas-transcript-618;comment="3'UTR" basu168 BSGatlas terminator 593370 593403 . - . ID=BSGatlas-terminator-329;Parent=BSGatlas-transcript-618;comment="Based on: BsubCyc,DBTBS, Energy: -7.1[kcal/mol]" basu168 BSGatlas gene 593407 594096 . - . ID=BSGatlas-gene-670;color=#3474B3;Name=ydfK;locus_tag=BSU05450,BSU_05450;Parent=BSGatlas-operon-299 basu168 BSGatlas CDS 593407 594096 . - 0 ID=BSGatlas-gene-670_transcribed;color=#3474B3;Name=ydfK;Parent=BSGatlas-transcript-618;comment="putative integral inner membrane protein";synonyms="ydfK";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-670 basu168 BSGatlas UTR 594097 594123 . - . ID=BSGatlas-5'UTR-367;Parent=BSGatlas-transcript-618;comment="5'UTR" basu168 BSGatlas TSS 594123 594123 . - . ID=BSGatlas-TSS-444;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 10200972,17962296" basu168 BSGatlas operon 594186 595040 . - . ID=BSGatlas-operon-300;color=#B32496 basu168 BSGatlas transcript 594186 595040 . - . ID=BSGatlas-transcript-619;color=#B37924;Parent=BSGatlas-operon-300,BSGatlas-gene-671;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-445 basu168 BSGatlas exon 594186 595040 . - . ID=BSGatlas-transcript-619_exon;Parent=BSGatlas-transcript-619 basu168 BSGatlas gene 594186 594998 . - . ID=BSGatlas-gene-671;color=#3474B3;Name=ydfL;locus_tag=BSU05460,BSU_05460;Parent=BSGatlas-operon-300 basu168 BSGatlas CDS 594186 594998 . - 0 ID=BSGatlas-gene-671_transcribed;color=#3474B3;Name=ydfL;Parent=BSGatlas-transcript-619;comment="putative transcriptional regulator of effluxtransporter";synonyms="ydfL";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0000166 nucleotide binding,GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-671 basu168 BSGatlas UTR 594999 595040 . - . ID=BSGatlas-5'UTR-368;Parent=BSGatlas-transcript-619;comment="5'UTR" basu168 BSGatlas TSS 595040 595040 . - . ID=BSGatlas-TSS-445;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 595107 595151 . - . ID=BSGatlas-terminator-330;Parent=BSGatlas-transcript-620;comment="Based on: Nicolas et al. downshift, Energy: -6.2[kcal/mol]" basu168 BSGatlas operon 595109 596093 . - . ID=BSGatlas-operon-301;color=#B32496 basu168 BSGatlas transcript 595109 596093 . - . ID=BSGatlas-transcript-620;color=#B37924;Parent=BSGatlas-operon-301,BSGatlas-gene-672;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-446 basu168 BSGatlas exon 595109 596093 . - . ID=BSGatlas-transcript-620_exon;Parent=BSGatlas-transcript-620 basu168 BSGatlas gene 595109 596002 . - . ID=BSGatlas-gene-672;color=#3474B3;Name=mneP;locus_tag=BSU05470,BSU_05470;Parent=BSGatlas-operon-301 basu168 BSGatlas CDS 595109 596002 . - 0 ID=BSGatlas-gene-672_transcribed;color=#3474B3;Name=mneP;Parent=BSGatlas-transcript-620;comment="primary Mn(II) efflux pump";synonyms="mneP,ydfM";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.13 Metal ion exporters,SW 1.3 Homeostasis,SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo),SW 1.3.2.2 Manganese,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005384 manganese ion transmembrane transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006812 cation transport,GO:0008324 cation transmembrane transporter activity,GO:0010042 response to manganese ion,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034220 ion transmembrane transport,GO:0071421 manganese ion transmembrane transport";derives_from=BSGatlas-gene-672 basu168 BSGatlas UTR 596003 596093 . - . ID=BSGatlas-5'UTR-369;Parent=BSGatlas-transcript-620;comment="5'UTR" basu168 BSGatlas TSS 596093 596093 . - . ID=BSGatlas-TSS-446;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 596320 598588 . + . ID=BSGatlas-operon-302;color=#FF00CC basu168 BSGatlas transcript 596320 598588 . + . ID=BSGatlas-transcript-622;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-673,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-447 basu168 BSGatlas exon 596320 598588 . + . ID=BSGatlas-transcript-622_exon;Parent=BSGatlas-transcript-622 basu168 BSGatlas transcript 596320 598543 . + . ID=BSGatlas-transcript-621;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-673,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-447 basu168 BSGatlas exon 596320 598543 . + . ID=BSGatlas-transcript-621_exon;Parent=BSGatlas-transcript-621 basu168 BSGatlas UTR 596320 596477 . + . ID=BSGatlas-5'UTR-370;Parent=BSGatlas-transcript-621,BSGatlas-transcript-622;comment="5'UTR" basu168 BSGatlas TSS 596320 596320 . + . ID=BSGatlas-TSS-447;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 17725564,17962296" basu168 BSGatlas gene 596478 597098 . + . ID=BSGatlas-gene-673;color=#1E90FF;Name=ydfN;locus_tag=BSU05480,BSU_05480;Parent=BSGatlas-operon-302 basu168 BSGatlas CDS 596478 597098 . + 0 ID=BSGatlas-gene-673_transcribed;color=#1E90FF;Name=ydfN;Parent=BSGatlas-transcript-621,BSGatlas-transcript-622;comment="putative oxidoreductase";synonyms="mhqN,ydfN";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.8 Resistance against oxidative and electrophile stress";ec="1.-.-.-";go="GO:0005737 cytoplasm,GO:0009636 response to toxic substance,GO:0016491 oxidoreductase activity,GO:0019439 aromatic compound catabolic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-673 basu168 BSGatlas transcript 596833 598588 . + . ID=BSGatlas-transcript-625;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-448 basu168 BSGatlas exon 596833 598588 . + . ID=BSGatlas-transcript-625_exon;Parent=BSGatlas-transcript-625 basu168 BSGatlas transcript 596833 598543 . + . ID=BSGatlas-transcript-624;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-448 basu168 BSGatlas exon 596833 598543 . + . ID=BSGatlas-transcript-624_exon;Parent=BSGatlas-transcript-624 basu168 BSGatlas transcript 596833 598052 . + . ID=BSGatlas-transcript-623;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-448 basu168 BSGatlas exon 596833 598052 . + . ID=BSGatlas-transcript-623_exon;Parent=BSGatlas-transcript-623 basu168 BSGatlas UTR 596833 597113 . + . ID=BSGatlas-5'UTR-371;Parent=BSGatlas-transcript-623,BSGatlas-transcript-624,BSGatlas-transcript-625;comment="5'UTR" basu168 BSGatlas TSS 596833 596833 . + . ID=BSGatlas-TSS-448;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 596860 598588 . + . ID=BSGatlas-transcript-628;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-449 basu168 BSGatlas exon 596860 598588 . + . ID=BSGatlas-transcript-628_exon;Parent=BSGatlas-transcript-628 basu168 BSGatlas transcript 596860 598543 . + . ID=BSGatlas-transcript-627;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674,BSGatlas-gene-675;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-449 basu168 BSGatlas exon 596860 598543 . + . ID=BSGatlas-transcript-627_exon;Parent=BSGatlas-transcript-627 basu168 BSGatlas transcript 596860 598052 . + . ID=BSGatlas-transcript-626;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-674;comment="Based on: BsubCyc,DBTBS";transcribed_from=BSGatlas-TSS-449 basu168 BSGatlas exon 596860 598052 . + . ID=BSGatlas-transcript-626_exon;Parent=BSGatlas-transcript-626 basu168 BSGatlas UTR 596860 597113 . + . ID=BSGatlas-5'UTR-372;Parent=BSGatlas-transcript-626,BSGatlas-transcript-627,BSGatlas-transcript-628;comment="5'UTR" basu168 BSGatlas TSS 596860 596860 . + . ID=BSGatlas-TSS-449;color=#FF0000;comment="Simga: B, Resolution: 0, Based on: BsubCyc,DBTBS, PubMed: 11532142,17962296" basu168 BSGatlas gene 597114 598052 . + . ID=BSGatlas-gene-674;color=#1E90FF;Name=ydfO;locus_tag=BSU05490,BSU_05490;Parent=BSGatlas-operon-302 basu168 BSGatlas CDS 597114 598052 . + 0 ID=BSGatlas-gene-674_transcribed;color=#1E90FF;Name=ydfO;Parent=BSGatlas-transcript-621,BSGatlas-transcript-622,BSGatlas-transcript-623,BSGatlas-transcript-624,BSGatlas-transcript-625,BSGatlas-transcript-626,BSGatlas-transcript-627,BSGatlas-transcript-628;comment="putative dioxygenase";synonyms="mhqO,ydfO";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.8 Resistance against oxidative and electrophile stress";ec="1.13.11.-";go="GO:0005737 cytoplasm,GO:0009636 response to toxic substance,GO:0016491 oxidoreductase activity,GO:0019439 aromatic compound catabolic process,GO:0046872 metal ion binding,GO:0051213 dioxygenase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-674 basu168 BSGatlas UTR 598053 598153 . + . ID=BSGatlas-internal_UTR-190;Parent=BSGatlas-transcript-621,BSGatlas-transcript-622,BSGatlas-transcript-624,BSGatlas-transcript-625,BSGatlas-transcript-627,BSGatlas-transcript-628;comment="internal_UTR" basu168 BSGatlas transcript 598065 598588 . + . ID=BSGatlas-transcript-630;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-675;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-450 basu168 BSGatlas exon 598065 598588 . + . ID=BSGatlas-transcript-630_exon;Parent=BSGatlas-transcript-630 basu168 BSGatlas transcript 598065 598543 . + . ID=BSGatlas-transcript-629;color=#FF9900;Parent=BSGatlas-operon-302,BSGatlas-gene-675;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-450 basu168 BSGatlas exon 598065 598543 . + . ID=BSGatlas-transcript-629_exon;Parent=BSGatlas-transcript-629 basu168 BSGatlas UTR 598065 598153 . + . ID=BSGatlas-5'UTR-373;Parent=BSGatlas-transcript-629,BSGatlas-transcript-630;comment="5'UTR" basu168 BSGatlas TSS 598065 598065 . + . ID=BSGatlas-TSS-450;color=#FF0000;comment="Simga: K, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 598154 598543 . + . ID=BSGatlas-gene-675;color=#1E90FF;Name=ydfP;locus_tag=BSU05500,BSU_05500;Parent=BSGatlas-operon-302 basu168 BSGatlas CDS 598154 598543 . + 0 ID=BSGatlas-gene-675_transcribed;color=#1E90FF;Name=ydfP;Parent=BSGatlas-transcript-621,BSGatlas-transcript-622,BSGatlas-transcript-624,BSGatlas-transcript-625,BSGatlas-transcript-627,BSGatlas-transcript-628,BSGatlas-transcript-629,BSGatlas-transcript-630;comment="putative membrane bound oxidoreductase";synonyms="mhqP,ydfP";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.8 Resistance against oxidative and electrophile stress";ec="1.-.-.-";go="GO:0005886 plasma membrane,GO:0009636 response to toxic substance,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0016491 oxidoreductase activity,GO:0019439 aromatic compound catabolic process,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-675 basu168 BSGatlas terminator 598512 598556 . + . ID=BSGatlas-terminator-331;Parent=BSGatlas-transcript-621,BSGatlas-transcript-624,BSGatlas-transcript-627,BSGatlas-transcript-629;comment="Based on: Nicolas et al. downshift, Energy: -9.3[kcal/mol]" basu168 BSGatlas UTR 598544 598588 . + . ID=BSGatlas-3'UTR-217;Parent=BSGatlas-transcript-622,BSGatlas-transcript-625,BSGatlas-transcript-628,BSGatlas-transcript-630;comment="3'UTR" basu168 BSGatlas terminator 598559 598588 . + . ID=BSGatlas-terminator-332;Parent=BSGatlas-transcript-622,BSGatlas-transcript-625,BSGatlas-transcript-628,BSGatlas-transcript-630;comment="Based on: BsubCyc, Energy: -17.9[kcal/mol]" basu168 BSGatlas operon 598659 600111 . + . ID=BSGatlas-operon-303;color=#FF00CC basu168 BSGatlas transcript 598659 600111 . + . ID=BSGatlas-transcript-632;color=#FF9900;Parent=BSGatlas-operon-303,BSGatlas-gene-676;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-451 basu168 BSGatlas exon 598659 600111 . + . ID=BSGatlas-transcript-632_exon;Parent=BSGatlas-transcript-632 basu168 BSGatlas transcript 598659 599067 . + . ID=BSGatlas-transcript-631;color=#FF9900;Parent=BSGatlas-operon-303,BSGatlas-gene-676;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-451 basu168 BSGatlas exon 598659 599067 . + . ID=BSGatlas-transcript-631_exon;Parent=BSGatlas-transcript-631 basu168 BSGatlas UTR 598659 598728 . + . ID=BSGatlas-5'UTR-374;Parent=BSGatlas-transcript-631,BSGatlas-transcript-632;comment="5'UTR" basu168 BSGatlas TSS 598659 598659 . + . ID=BSGatlas-TSS-451;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 598729 599067 . + . ID=BSGatlas-gene-676;color=#1E90FF;Name=ydfQ;locus_tag=BSU05510,BSU_05510;Parent=BSGatlas-operon-303 basu168 BSGatlas CDS 598729 599067 . + 0 ID=BSGatlas-gene-676_transcribed;color=#1E90FF;Name=ydfQ;Parent=BSGatlas-transcript-631,BSGatlas-transcript-632;comment="putative thioredoxin or thiol-disulfideisomerase";synonyms="ydfQ";subtiwiki_category="SW 2 Metabolism,SW 2.1 Electron transport and ATP synthesis,SW 2.1.4 Electron transport/ other/ based on similarity";go="GO:0045454 cell redox homeostasis";derives_from=BSGatlas-gene-676 basu168 BSGatlas terminator 599033 599077 . + . ID=BSGatlas-terminator-333;Parent=BSGatlas-transcript-631;comment="Based on: Nicolas et al. downshift, Energy: -6[kcal/mol]" basu168 BSGatlas UTR 599068 600111 . + . ID=BSGatlas-3'UTR-218;Parent=BSGatlas-transcript-632;comment="3'UTR" basu168 BSGatlas operon 599107 599343 . - . ID=BSGatlas-operon-304;color=#B32496 basu168 BSGatlas gene 599107 599343 . - . ID=BSGatlas-gene-677;color=#3474B3;Name=ydzH;locus_tag=BSU05520,BSU_05520;Parent=BSGatlas-operon-304 basu168 BSGatlas transcript 599107 599343 . - . ID=BSGatlas-transcript-633;color=#B37924;Parent=BSGatlas-operon-304,BSGatlas-gene-677;comment="Based on: SubtiWiki" basu168 BSGatlas CDS 599107 599343 . - 0 ID=BSGatlas-gene-677_transcribed;color=#3474B3;Name=ydzH;Parent=BSGatlas-transcript-633;comment="conserved hypothetical protein,sporulation-related";synonyms="ydzH";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling),SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-677 basu168 BSGatlas exon 599107 599343 . - . ID=BSGatlas-transcript-633_exon;Parent=BSGatlas-transcript-633 basu168 BSGatlas terminator 599109 599153 . - . ID=BSGatlas-terminator-334;Parent=BSGatlas-transcript-633;comment="Based on: Nicolas et al. downshift, Energy: -6[kcal/mol]" basu168 BSGatlas operon 599187 602100 . + . ID=BSGatlas-operon-305;color=#FF00CC basu168 BSGatlas transcript 599187 602100 . + . ID=BSGatlas-transcript-634;color=#FF9900;Parent=BSGatlas-operon-305,BSGatlas-gene-680;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-452 basu168 BSGatlas exon 599187 602100 . + . ID=BSGatlas-transcript-634_exon;Parent=BSGatlas-transcript-634 basu168 BSGatlas UTR 599187 601018 . + . ID=BSGatlas-5'UTR-375;Parent=BSGatlas-transcript-634;comment="5'UTR" basu168 BSGatlas TSS 599187 599187 . + . ID=BSGatlas-TSS-452;color=#FF0000;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 599527 600143 . - . ID=BSGatlas-operon-306;color=#B32496 basu168 BSGatlas transcript 599527 600143 . - . ID=BSGatlas-transcript-635;color=#B37924;Parent=BSGatlas-operon-306,BSGatlas-gene-678;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-453 basu168 BSGatlas exon 599527 600143 . - . ID=BSGatlas-transcript-635_exon;Parent=BSGatlas-transcript-635 basu168 BSGatlas UTR 599527 599874 . - . ID=BSGatlas-3'UTR-219;Parent=BSGatlas-transcript-635;comment="3'UTR" basu168 BSGatlas terminator 599527 599571 . - . ID=BSGatlas-terminator-335;Parent=BSGatlas-transcript-635;comment="Based on: Nicolas et al. downshift,Nicolas et al 3' UTR end, Energy: -12.4[kcal/mol]" basu168 BSGatlas gene 599875 600105 . - . ID=BSGatlas-gene-678;color=#3474B3;Name=ydzR;locus_tag=BSU05529,BSU_05529;Parent=BSGatlas-operon-306 basu168 BSGatlas CDS 599875 600105 . - 0 ID=BSGatlas-gene-678_transcribed;color=#3474B3;Name=ydzR;Parent=BSGatlas-transcript-635;comment="conserved hypothetical protein,sporulation-related";synonyms="ydzR";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling),SW 6 Groups of genes,SW 6.7 Proteins of unknown function";derives_from=BSGatlas-gene-678 basu168 BSGatlas terminator 600067 600111 . + . ID=BSGatlas-terminator-336;Parent=BSGatlas-transcript-632;comment="Based on: Nicolas et al. downshift, Energy: -6[kcal/mol]" basu168 BSGatlas UTR 600106 600143 . - . ID=BSGatlas-5'UTR-376;Parent=BSGatlas-transcript-635;comment="5'UTR" basu168 BSGatlas TSS 600143 600143 . - . ID=BSGatlas-TSS-453;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 600187 600906 . - . ID=BSGatlas-operon-307;color=#B32496 basu168 BSGatlas transcript 600187 600906 . - . ID=BSGatlas-transcript-636;color=#B37924;Parent=BSGatlas-operon-307,BSGatlas-gene-679;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-454 basu168 BSGatlas exon 600187 600906 . - . ID=BSGatlas-transcript-636_exon;Parent=BSGatlas-transcript-636 basu168 BSGatlas UTR 600187 600228 . - . ID=BSGatlas-3'UTR-220;Parent=BSGatlas-transcript-636;comment="3'UTR" basu168 BSGatlas terminator 600187 600221 . - . ID=BSGatlas-terminator-337;Parent=BSGatlas-transcript-636;comment="Based on: BsubCyc,DBTBS, Energy: -4.7[kcal/mol]" basu168 BSGatlas gene 600229 600906 . - . ID=BSGatlas-gene-679;color=#3474B3;Name=ydfR;locus_tag=BSU05530,BSU_05530;Parent=BSGatlas-operon-307 basu168 BSGatlas CDS 600229 600906 . - 0 ID=BSGatlas-gene-679_transcribed;color=#3474B3;Name=ydfR;Parent=BSGatlas-transcript-636;comment="conserved membrane protein of unknown function";synonyms="ydfR";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-679 basu168 BSGatlas TSS 600872 600872 . - . ID=BSGatlas-TSS-454;color=#B32424;comment="Simga: G, Resolution: 0, Based on: DBTBS,Nicolas et al upshift, PubMed: 16497325" basu168 BSGatlas transcript 600956 602100 . + . ID=BSGatlas-transcript-637;color=#FF9900;Parent=BSGatlas-operon-305,BSGatlas-gene-680;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-455 basu168 BSGatlas exon 600956 602100 . + . ID=BSGatlas-transcript-637_exon;Parent=BSGatlas-transcript-637 basu168 BSGatlas UTR 600956 601018 . + . ID=BSGatlas-5'UTR-377;Parent=BSGatlas-transcript-637;comment="5'UTR" basu168 BSGatlas TSS 600956 600956 . + . ID=BSGatlas-TSS-455;color=#FF0000;comment="Simga: G, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 16497325,17962296" basu168 BSGatlas gene 601019 601726 . + . ID=BSGatlas-gene-680;color=#1E90FF;Name=ydfS;locus_tag=BSU05540,BSU_05540;Parent=BSGatlas-operon-305 basu168 BSGatlas CDS 601019 601726 . + 0 ID=BSGatlas-gene-680_transcribed;color=#1E90FF;Name=ydfS;Parent=BSGatlas-transcript-634,BSGatlas-transcript-637;comment="conserved hypothetical protein";synonyms="ydfS";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-680 basu168 BSGatlas UTR 601727 602100 . + . ID=BSGatlas-3'UTR-221;Parent=BSGatlas-transcript-634,BSGatlas-transcript-637;comment="3'UTR" basu168 BSGatlas operon 601741 602739 . - . ID=BSGatlas-operon-308;color=#B32496 basu168 BSGatlas transcript 601741 602739 . - . ID=BSGatlas-transcript-638;color=#B37924;Parent=BSGatlas-operon-308,BSGatlas-gene-683,BSGatlas-gene-682,BSGatlas-gene-681;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-456 basu168 BSGatlas exon 601741 602739 . - . ID=BSGatlas-transcript-638_exon;Parent=BSGatlas-transcript-638 basu168 BSGatlas gene 601741 602172 . - . ID=BSGatlas-gene-681;color=#3474B3;Name=cotP;locus_tag=BSU05550,BSU_05550;Parent=BSGatlas-operon-308 basu168 BSGatlas CDS 601741 602172 . - 0 ID=BSGatlas-gene-681_transcribed;color=#3474B3;Name=cotP;Parent=BSGatlas-transcript-638;comment="spore coat protein";synonyms="cotP,ydfT";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.5 Class V";go="GO:0030435 sporulation resulting in formation of a cellular spore";derives_from=BSGatlas-gene-681 basu168 BSGatlas terminator 602046 602100 . + . ID=BSGatlas-terminator-338;Parent=BSGatlas-transcript-634,BSGatlas-transcript-637;comment="Based on: BsubCyc,DBTBS, Energy: -15[kcal/mol]" basu168 BSGatlas gene 602185 602427 . - . ID=BSGatlas-gene-682;color=#3474B3;Name=ydgA;locus_tag=BSU05560,BSU_05560;Parent=BSGatlas-operon-308 basu168 BSGatlas CDS 602185 602427 . - 0 ID=BSGatlas-gene-682_transcribed;color=#3474B3;Name=ydgA;Parent=BSGatlas-transcript-638;comment="conserved hypothetical protein; putativegermination protein";synonyms="ydgA";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other";derives_from=BSGatlas-gene-682 basu168 BSGatlas gene 602441 602713 . - . ID=BSGatlas-gene-683;color=#3474B3;Name=ydgB;locus_tag=BSU05570,BSU_05570;Parent=BSGatlas-operon-308 basu168 BSGatlas CDS 602441 602713 . - 0 ID=BSGatlas-gene-683_transcribed;color=#3474B3;Name=ydgB;Parent=BSGatlas-transcript-638;comment="conserved hypothetical protein; putativegermination protein";synonyms="ydgB";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.11 Efp-dependent proteins";derives_from=BSGatlas-gene-683 basu168 BSGatlas UTR 602714 602739 . - . ID=BSGatlas-5'UTR-378;Parent=BSGatlas-transcript-638;comment="5'UTR" basu168 BSGatlas TSS 602739 602739 . - . ID=BSGatlas-TSS-456;color=#B32424;comment="Simga: K, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 602963 606599 . + . ID=BSGatlas-operon-309;color=#FF00CC basu168 BSGatlas transcript 602963 606599 . + . ID=BSGatlas-transcript-640;color=#FF9900;Parent=BSGatlas-operon-309,BSGatlas-gene-684,BSGatlas-gene-685,BSGatlas-gene-686;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-457 basu168 BSGatlas exon 602963 606599 . + . ID=BSGatlas-transcript-640_exon;Parent=BSGatlas-transcript-640 basu168 BSGatlas transcript 602963 605302 . + . ID=BSGatlas-transcript-639;color=#FF9900;Parent=BSGatlas-operon-309,BSGatlas-gene-684,BSGatlas-gene-685,BSGatlas-gene-686;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-457 basu168 BSGatlas exon 602963 605302 . + . ID=BSGatlas-transcript-639_exon;Parent=BSGatlas-transcript-639 basu168 BSGatlas UTR 602963 603011 . + . ID=BSGatlas-5'UTR-379;Parent=BSGatlas-transcript-639,BSGatlas-transcript-640;comment="5'UTR" basu168 BSGatlas TSS 602963 602963 . + . ID=BSGatlas-TSS-457;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 603012 603599 . + . ID=BSGatlas-gene-684;color=#1E90FF;Name=ydgC;locus_tag=BSU05580,BSU_05580;Parent=BSGatlas-operon-309 basu168 BSGatlas CDS 603012 603599 . + 0 ID=BSGatlas-gene-684_transcribed;color=#1E90FF;Name=ydgC;Parent=BSGatlas-transcript-639,BSGatlas-transcript-640;comment="putative transcriptional regulator";synonyms="ydgC";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-684 basu168 BSGatlas gene 603596 603940 . + . ID=BSGatlas-gene-685;color=#1E90FF;Name=ydgD;locus_tag=BSU05590,BSU_05590;Parent=BSGatlas-operon-309 basu168 BSGatlas CDS 603596 603940 . + 0 ID=BSGatlas-gene-685_transcribed;color=#1E90FF;Name=ydgD;Parent=BSGatlas-transcript-639,BSGatlas-transcript-640;comment="conserved hypothetical protein";synonyms="ydgD";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-685 basu168 BSGatlas UTR 603941 604102 . + . ID=BSGatlas-internal_UTR-191;Parent=BSGatlas-transcript-639,BSGatlas-transcript-640;comment="internal_UTR" basu168 BSGatlas gene 604103 604576 . + . ID=BSGatlas-gene-686;color=#1E90FF;Name=ydgE;locus_tag=BSU05600,BSU_05600;Parent=BSGatlas-operon-309 basu168 BSGatlas CDS 604103 604576 . + 0 ID=BSGatlas-gene-686_transcribed;color=#1E90FF;Name=ydgE;Parent=BSGatlas-transcript-639,BSGatlas-transcript-640;comment="putative N-acetyltransferase";synonyms="ydgE";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.4 Protein modification,SW 3.3.4.5 Protein acetylases/ deacetylases";ec="2.3.1.-";go="GO:0008080 N-acetyltransferase activity,GO:0008152 metabolic process,GO:0016740 transferase activity,GO:0016746 transferase activity, transferring acyl groups";derives_from=BSGatlas-gene-686 basu168 BSGatlas UTR 604577 606599 . + . ID=BSGatlas-3'UTR-223;Parent=BSGatlas-transcript-640;comment="3'UTR" basu168 BSGatlas UTR 604577 605302 . + . ID=BSGatlas-3'UTR-222;Parent=BSGatlas-transcript-639;comment="3'UTR" basu168 BSGatlas operon 604697 606379 . - . ID=BSGatlas-operon-310;color=#B32496 basu168 BSGatlas transcript 604697 606379 . - . ID=BSGatlas-transcript-641;color=#B37924;Parent=BSGatlas-operon-310,BSGatlas-gene-687;comment="Based on: SubtiWiki" basu168 BSGatlas exon 604697 606379 . - . ID=BSGatlas-transcript-641_exon;Parent=BSGatlas-transcript-641 basu168 BSGatlas terminator 604697 604741 . - . ID=BSGatlas-terminator-339;Parent=BSGatlas-transcript-641;comment="Based on: Nicolas et al. downshift, Energy: -8.8[kcal/mol]" basu168 BSGatlas UTR 604697 604735 . - . ID=BSGatlas-3'UTR-224;Parent=BSGatlas-transcript-641;comment="3'UTR" basu168 BSGatlas gene 604736 606379 . - . ID=BSGatlas-gene-687;color=#3474B3;Name=vmlR;locus_tag=BSU05610,BSU_05610;Parent=BSGatlas-operon-310 basu168 BSGatlas CDS 604736 606379 . - 0 ID=BSGatlas-gene-687_transcribed;color=#3474B3;Name=vmlR;Parent=BSGatlas-transcript-641;comment="ATP-binding cassette efflux transporter";synonyms="expZ,vmlR";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.13 Resistance against toxins/ antibiotics";go="GO:0000166 nucleotide binding,GO:0005524 ATP binding,GO:0008152 metabolic process,GO:0016887 ATPase activity,GO:0017111 nucleoside-triphosphatase activity";derives_from=BSGatlas-gene-687 basu168 BSGatlas terminator 605236 605302 . + . ID=BSGatlas-terminator-340;Parent=BSGatlas-transcript-639;comment="Based on: Nicolas et al 3' UTR end, Energy: [kcal/mol]" basu168 BSGatlas operon 606406 606606 . - . ID=BSGatlas-operon-311;color=#B32496 basu168 BSGatlas gene 606406 606606 . - . ID=BSGatlas-gene-688;color=#24B324;Name=S198_ncr1575;locus_tag=new_606414_606611_c;Parent=BSGatlas-operon-311 basu168 BSGatlas transcript 606406 606606 . - . ID=BSGatlas-transcript-642;color=#B37924;Parent=BSGatlas-operon-311,BSGatlas-gene-688;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-459 basu168 BSGatlas sRNA 606406 606606 . - . ID=BSGatlas-gene-688_transcribed;color=#24B324;Name=S198_ncr1575;Parent=BSGatlas-transcript-642;synonyms="S198";derives_from=BSGatlas-gene-688 basu168 BSGatlas exon 606406 606606 . - . ID=BSGatlas-transcript-642_exon;Parent=BSGatlas-transcript-642 basu168 BSGatlas terminator 606435 606479 . - . ID=BSGatlas-terminator-341;Parent=BSGatlas-transcript-642;comment="Based on: Nicolas et al. downshift, Energy: -11.8[kcal/mol]" basu168 BSGatlas TSS 606451 606451 . + . ID=BSGatlas-TSS-458;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas terminator 606555 606599 . + . ID=BSGatlas-terminator-342;Parent=BSGatlas-transcript-640;comment="Based on: Nicolas et al. downshift, Energy: -13.3[kcal/mol]" basu168 BSGatlas TSS 606615 606615 . - . ID=BSGatlas-TSS-459;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 606676 608140 . - . ID=BSGatlas-operon-312;color=#B32496 basu168 BSGatlas transcript 606676 608140 . - . ID=BSGatlas-transcript-643;color=#B37924;Parent=BSGatlas-operon-312,BSGatlas-gene-689;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-460 basu168 BSGatlas exon 606676 608140 . - . ID=BSGatlas-transcript-643_exon;Parent=BSGatlas-transcript-643 basu168 BSGatlas terminator 606676 606720 . - . ID=BSGatlas-terminator-343;Parent=BSGatlas-transcript-643;comment="Based on: Nicolas et al. downshift, Energy: -13.3[kcal/mol]" basu168 BSGatlas UTR 606676 606698 . - . ID=BSGatlas-3'UTR-225;Parent=BSGatlas-transcript-643;comment="3'UTR" basu168 BSGatlas gene 606699 608075 . - . ID=BSGatlas-gene-689;color=#3474B3;Name=ydgF;locus_tag=BSU05620,BSU_05620;Parent=BSGatlas-operon-312 basu168 BSGatlas CDS 606699 608075 . - 0 ID=BSGatlas-gene-689_transcribed;color=#3474B3;Name=ydgF;Parent=BSGatlas-transcript-643;comment="putative amino acid permease";synonyms="ydgF";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.1 Amino acid transporters,SW 1.2.4.1.2 Other amino acid transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0003333 amino acid transmembrane transport,GO:0005886 plasma membrane,GO:0006810 transport,GO:0006865 amino acid transport,GO:0015171 amino acid transmembrane transporter activity,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-689 basu168 BSGatlas UTR 608076 608140 . - . ID=BSGatlas-5'UTR-380;Parent=BSGatlas-transcript-643;comment="5'UTR" basu168 BSGatlas TSS 608140 608140 . - . ID=BSGatlas-TSS-460;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 608219 608809 . - . ID=BSGatlas-operon-313;color=#B32496 basu168 BSGatlas transcript 608219 608809 . - . ID=BSGatlas-transcript-644;color=#B37924;Parent=BSGatlas-operon-313,BSGatlas-gene-690;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-461 basu168 BSGatlas exon 608219 608809 . - . ID=BSGatlas-transcript-644_exon;Parent=BSGatlas-transcript-644 basu168 BSGatlas UTR 608219 608245 . - . ID=BSGatlas-3'UTR-226;Parent=BSGatlas-transcript-644;comment="3'UTR" basu168 BSGatlas terminator 608219 608241 . - . ID=BSGatlas-terminator-344;Parent=BSGatlas-transcript-644;comment="Based on: BsubCyc,Nicolas et al. downshift, Energy: -17.8[kcal/mol]" basu168 BSGatlas gene 608246 608764 . - . ID=BSGatlas-gene-690;color=#3474B3;Name=dinB;locus_tag=BSU05630,BSU_05630;Parent=BSGatlas-operon-313 basu168 BSGatlas CDS 608246 608764 . - 0 ID=BSGatlas-gene-690_transcribed;color=#3474B3;Name=dinB;Parent=BSGatlas-transcript-644;comment="nuclease inhibitor";synonyms="bstG,dinB";subtiwiki_category="SW 3 Information processing,SW 3.1 Genetics,SW 3.1.5 DNA repair/ recombination,SW 3.1.5.6 Other proteins";go="GO:0046872 metal ion binding";derives_from=BSGatlas-gene-690 basu168 BSGatlas UTR 608765 608809 . - . ID=BSGatlas-5'UTR-381;Parent=BSGatlas-transcript-644;comment="5'UTR" basu168 BSGatlas TSS 608809 608809 . - . ID=BSGatlas-TSS-461;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 608886 612188 . + . ID=BSGatlas-operon-314;color=#FF00CC basu168 BSGatlas transcript 608886 612188 . + . ID=BSGatlas-transcript-646;color=#FF9900;Parent=BSGatlas-operon-314,BSGatlas-gene-691,BSGatlas-gene-692;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-462 basu168 BSGatlas exon 608886 612188 . + . ID=BSGatlas-transcript-646_exon;Parent=BSGatlas-transcript-646 basu168 BSGatlas transcript 608886 612091 . + . ID=BSGatlas-transcript-645;color=#FF9900;Parent=BSGatlas-operon-314,BSGatlas-gene-691,BSGatlas-gene-692;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-462 basu168 BSGatlas exon 608886 612091 . + . ID=BSGatlas-transcript-645_exon;Parent=BSGatlas-transcript-645 basu168 BSGatlas UTR 608886 608932 . + . ID=BSGatlas-5'UTR-382;Parent=BSGatlas-transcript-645,BSGatlas-transcript-646;comment="5'UTR" basu168 BSGatlas TSS 608886 608886 . + . ID=BSGatlas-TSS-462;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 608933 609391 . + . ID=BSGatlas-gene-691;color=#1E90FF;Name=ydgG;locus_tag=BSU05640,BSU_05640;Parent=BSGatlas-operon-314 basu168 BSGatlas CDS 608933 609391 . + 0 ID=BSGatlas-gene-691_transcribed;color=#1E90FF;Name=ydgG;Parent=BSGatlas-transcript-645,BSGatlas-transcript-646;comment="putative transcriptional regulator (MarRfamily)";synonyms="ydgG";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-691 basu168 BSGatlas gene 609388 612045 . + . ID=BSGatlas-gene-692;color=#1E90FF;Name=ydgH;locus_tag=BSU05650,BSU_05650;Parent=BSGatlas-operon-314 basu168 BSGatlas CDS 609388 612045 . + 0 ID=BSGatlas-gene-692_transcribed;color=#1E90FF;Name=ydgH;Parent=BSGatlas-transcript-645,BSGatlas-transcript-646;comment="putative membrane component";synonyms="ydgH";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005515 protein binding,GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-692 basu168 BSGatlas UTR 612046 612188 . + . ID=BSGatlas-3'UTR-228;Parent=BSGatlas-transcript-646;comment="3'UTR" basu168 BSGatlas UTR 612046 612091 . + . ID=BSGatlas-3'UTR-227;Parent=BSGatlas-transcript-645;comment="3'UTR" basu168 BSGatlas terminator 612047 612091 . + . ID=BSGatlas-terminator-345;Parent=BSGatlas-transcript-645;comment="Based on: BsubCyc,DBTBS, Energy: -15.3[kcal/mol]" basu168 BSGatlas terminator 612144 612188 . + . ID=BSGatlas-terminator-346;Parent=BSGatlas-transcript-646;comment="Based on: Nicolas et al. downshift, Energy: -13.9[kcal/mol]" basu168 BSGatlas operon 612173 613330 . - . ID=BSGatlas-operon-315;color=#B32496 basu168 BSGatlas transcript 612173 613330 . - . ID=BSGatlas-transcript-647;color=#B37924;Parent=BSGatlas-operon-315,BSGatlas-gene-694,BSGatlas-gene-693;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-463 basu168 BSGatlas exon 612173 613330 . - . ID=BSGatlas-transcript-647_exon;Parent=BSGatlas-transcript-647 basu168 BSGatlas terminator 612173 612217 . - . ID=BSGatlas-terminator-347;Parent=BSGatlas-transcript-647;comment="Based on: Nicolas et al. downshift, Energy: -16.6[kcal/mol]" basu168 BSGatlas UTR 612173 612190 . - . ID=BSGatlas-3'UTR-229;Parent=BSGatlas-transcript-647;comment="3'UTR" basu168 BSGatlas gene 612191 612820 . - . ID=BSGatlas-gene-693;color=#3474B3;Name=ydgI;locus_tag=BSU05660,BSU_05660;Parent=BSGatlas-operon-315 basu168 BSGatlas CDS 612191 612820 . - 0 ID=BSGatlas-gene-693_transcribed;color=#3474B3;Name=ydgI;Parent=BSGatlas-transcript-647;comment="nitroreductase of unidentified specificity(reduces 5-(aziridin-1-yl)-2,4-dinitrobenzamide prodrug)";synonyms="ydgI";subtiwiki_category="SW 6 Groups of genes,SW 6.6 Poorly characterized/ putative enzymes";ec="1.-.-.-";go="GO:0016491 oxidoreductase activity,GO:0055114 oxidation-reduction process";derives_from=BSGatlas-gene-693 basu168 BSGatlas gene 612836 613330 . - . ID=BSGatlas-gene-694;color=#3474B3;Name=ydgJ;locus_tag=BSU05670,BSU_05670;Parent=BSGatlas-operon-315 basu168 BSGatlas CDS 612836 613330 . - 0 ID=BSGatlas-gene-694_transcribed;color=#3474B3;Name=ydgJ;Parent=BSGatlas-transcript-647;comment="putative transcriptional regulator (MarRfamily)";synonyms="ydgJ";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005622 intracellular,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-694 basu168 BSGatlas TSS 613337 613337 . - . ID=BSGatlas-TSS-463;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 613552 614849 . + . ID=BSGatlas-operon-316;color=#FF00CC basu168 BSGatlas transcript 613552 614849 . + . ID=BSGatlas-transcript-648;color=#FF9900;Parent=BSGatlas-operon-316,BSGatlas-gene-695;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-464 basu168 BSGatlas exon 613552 614849 . + . ID=BSGatlas-transcript-648_exon;Parent=BSGatlas-transcript-648 basu168 BSGatlas UTR 613552 613640 . + . ID=BSGatlas-5'UTR-383;Parent=BSGatlas-transcript-648;comment="5'UTR" basu168 BSGatlas TSS 613552 613552 . + . ID=BSGatlas-TSS-464;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 613641 614849 . + . ID=BSGatlas-gene-695;color=#1E90FF;Name=ydgK;locus_tag=BSU05680,BSU_05680;Parent=BSGatlas-operon-316 basu168 BSGatlas CDS 613641 614849 . + 0 ID=BSGatlas-gene-695_transcribed;color=#1E90FF;Name=ydgK;Parent=BSGatlas-transcript-648;comment="putative efflux transporter";synonyms="ydgK";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005215 transporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-695 basu168 BSGatlas terminator 614806 614850 . + . ID=BSGatlas-terminator-348;Parent=BSGatlas-transcript-648;comment="Based on: Nicolas et al. downshift, Energy: -7.5[kcal/mol]" basu168 BSGatlas operon 614885 615761 . - . ID=BSGatlas-operon-317;color=#B32496 basu168 BSGatlas transcript 614885 615761 . - . ID=BSGatlas-transcript-649;color=#B37924;Parent=BSGatlas-operon-317,BSGatlas-gene-696;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-465 basu168 BSGatlas exon 614885 615761 . - . ID=BSGatlas-transcript-649_exon;Parent=BSGatlas-transcript-649 basu168 BSGatlas gene 614885 615622 . - . ID=BSGatlas-gene-696;color=#3474B3;Name=ydhB;locus_tag=BSU05690,BSU_05690;Parent=BSGatlas-operon-317 basu168 BSGatlas CDS 614885 615622 . - 0 ID=BSGatlas-gene-696_transcribed;color=#3474B3;Name=ydhB;Parent=BSGatlas-transcript-649;comment="putative integral inner membrane protein";synonyms="ydhB";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.12 Other transporters,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-696 basu168 BSGatlas UTR 615623 615761 . - . ID=BSGatlas-5'UTR-384;Parent=BSGatlas-transcript-649;comment="5'UTR" basu168 BSGatlas TSS 615761 615761 . - . ID=BSGatlas-TSS-465;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 615818 616545 . + . ID=BSGatlas-operon-318;color=#FF00CC basu168 BSGatlas transcript 615818 616545 . + . ID=BSGatlas-transcript-650;color=#FF9900;Parent=BSGatlas-operon-318,BSGatlas-gene-697;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-466 basu168 BSGatlas exon 615818 616545 . + . ID=BSGatlas-transcript-650_exon;Parent=BSGatlas-transcript-650 basu168 BSGatlas UTR 615818 615870 . + . ID=BSGatlas-5'UTR-385;Parent=BSGatlas-transcript-650;comment="5'UTR" basu168 BSGatlas TSS 615818 615818 . + . ID=BSGatlas-TSS-466;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 615871 616545 . + . ID=BSGatlas-gene-697;color=#1E90FF;Name=ydhC;locus_tag=BSU05700,BSU_05700;Parent=BSGatlas-operon-318 basu168 BSGatlas CDS 615871 616545 . + 0 ID=BSGatlas-gene-697_transcribed;color=#1E90FF;Name=ydhC;Parent=BSGatlas-transcript-650;comment="putative transcriptional regulator (GntRfamily)";synonyms="ydhC";subtiwiki_category="SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.6 Transcription factor/ other/ based on similarity";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated,GO:0043565 sequence-specific DNA binding";derives_from=BSGatlas-gene-697 basu168 BSGatlas operon 616631 617934 . + . ID=BSGatlas-operon-319;color=#FF00CC basu168 BSGatlas transcript 616631 617934 . + . ID=BSGatlas-transcript-651;color=#FF9900;Parent=BSGatlas-operon-319,BSGatlas-gene-698;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-467 basu168 BSGatlas exon 616631 617934 . + . ID=BSGatlas-transcript-651_exon;Parent=BSGatlas-transcript-651 basu168 BSGatlas UTR 616631 616671 . + . ID=BSGatlas-5'UTR-386;Parent=BSGatlas-transcript-651;comment="5'UTR" basu168 BSGatlas TSS 616631 616631 . + . ID=BSGatlas-TSS-467;color=#FF0000;comment="Simga: EF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 616672 617934 . + . ID=BSGatlas-gene-698;color=#1E90FF;Name=spoL;locus_tag=BSU05710,BSU_05710;Parent=BSGatlas-operon-319 basu168 BSGatlas CDS 616672 617934 . + 0 ID=BSGatlas-gene-698_transcribed;color=#1E90FF;Name=spoL;Parent=BSGatlas-transcript-651;comment="spore cortex lytic enzyme";synonyms="ydhD";subtiwiki_category="SW 1 Cellular processes,SW 1.1 Cell envelope and cell division,SW 1.1.6 Cell wall/ other/ based on similarity,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.1 Spore coat proteins,SW 4.2.1.1.8 Not yet assigned";go="GO:0000272 polysaccharide catabolic process,GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0004568 chitinase activity,GO:0005975 carbohydrate metabolic process,GO:0006032 chitin catabolic process,GO:0008152 metabolic process,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds,GO:0016998 cell wall macromolecule catabolic process,GO:0030435 sporulation resulting in formation of a cellular spore,GO:0031160 spore wall";derives_from=BSGatlas-gene-698 basu168 BSGatlas terminator 617886 617930 . + . ID=BSGatlas-terminator-349;Parent=BSGatlas-transcript-651;comment="Based on: Nicolas et al. downshift, Energy: -7.1[kcal/mol]" basu168 BSGatlas operon 618045 619316 . + . ID=BSGatlas-operon-320;color=#FF00CC basu168 BSGatlas transcript 618045 619316 . + . ID=BSGatlas-transcript-652;color=#FF9900;Parent=BSGatlas-operon-320,BSGatlas-gene-699;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-468 basu168 BSGatlas exon 618045 619316 . + . ID=BSGatlas-transcript-652_exon;Parent=BSGatlas-transcript-652 basu168 BSGatlas UTR 618045 618094 . + . ID=BSGatlas-5'UTR-387;Parent=BSGatlas-transcript-652;comment="5'UTR" basu168 BSGatlas TSS 618045 618045 . + . ID=BSGatlas-TSS-468;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 20639339" basu168 BSGatlas gene 618095 619282 . + . ID=BSGatlas-gene-699;color=#1E90FF;Name=ydhE;locus_tag=BSU05720,BSU_05720;Parent=BSGatlas-operon-320 basu168 BSGatlas CDS 618095 619282 . + 0 ID=BSGatlas-gene-699_transcribed;color=#1E90FF;Name=ydhE;Parent=BSGatlas-transcript-652;comment="putative glycosyltransferase";synonyms="ydhE";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity";go="GO:0008152 metabolic process,GO:0016740 transferase activity,GO:0016757 transferase activity, transferring glycosyl groups,GO:0016758 transferase activity, transferring hexosyl groups,GO:0016999 antibiotic metabolic process";derives_from=BSGatlas-gene-699 basu168 BSGatlas terminator 619272 619316 . + . ID=BSGatlas-terminator-350;Parent=BSGatlas-transcript-652;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas operon 619274 621604 . - . ID=BSGatlas-operon-321;color=#B32496 basu168 BSGatlas transcript 619274 621604 . - . ID=BSGatlas-transcript-654;color=#B37924;Parent=BSGatlas-operon-321,BSGatlas-gene-701,BSGatlas-gene-700;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-470 basu168 BSGatlas exon 619274 621604 . - . ID=BSGatlas-transcript-654_exon;Parent=BSGatlas-transcript-654 basu168 BSGatlas transcript 619274 621522 . - . ID=BSGatlas-transcript-653;color=#B37924;Parent=BSGatlas-operon-321,BSGatlas-gene-701,BSGatlas-gene-700;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-469 basu168 BSGatlas exon 619274 621522 . - . ID=BSGatlas-transcript-653_exon;Parent=BSGatlas-transcript-653 basu168 BSGatlas terminator 619274 619320 . - . ID=BSGatlas-terminator-351;Parent=BSGatlas-transcript-653,BSGatlas-transcript-654;comment="Based on: BsubCyc,DBTBS, Energy: -22.2[kcal/mol]" basu168 BSGatlas UTR 619274 619320 . - . ID=BSGatlas-3'UTR-230;Parent=BSGatlas-transcript-653,BSGatlas-transcript-654;comment="3'UTR" basu168 BSGatlas UTR 619283 619316 . + . ID=BSGatlas-3'UTR-231;Parent=BSGatlas-transcript-652;comment="3'UTR" basu168 BSGatlas transcript 619321 621604 . - . ID=BSGatlas-transcript-656;color=#B37924;Parent=BSGatlas-operon-321,BSGatlas-gene-701,BSGatlas-gene-700;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-470 basu168 BSGatlas exon 619321 621604 . - . ID=BSGatlas-transcript-656_exon;Parent=BSGatlas-transcript-656 basu168 BSGatlas transcript 619321 621522 . - . ID=BSGatlas-transcript-655;color=#B37924;Parent=BSGatlas-operon-321,BSGatlas-gene-701,BSGatlas-gene-700;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-469 basu168 BSGatlas exon 619321 621522 . - . ID=BSGatlas-transcript-655_exon;Parent=BSGatlas-transcript-655 basu168 BSGatlas gene 619321 620031 . - . ID=BSGatlas-gene-700;color=#3474B3;Name=ydhF;locus_tag=BSU05730,BSU_05730;Parent=BSGatlas-operon-321 basu168 BSGatlas CDS 619321 620031 . - 0 ID=BSGatlas-gene-700_transcribed;color=#3474B3;Name=ydhF;Parent=BSGatlas-transcript-653,BSGatlas-transcript-654,BSGatlas-transcript-655,BSGatlas-transcript-656;comment="putative phosphate-starvation lipoprotein";synonyms="ydhF";subtiwiki_category="SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.12 Secreted proteins";go="GO:0005615 extracellular space";derives_from=BSGatlas-gene-700 basu168 BSGatlas terminator 619325 619369 . - . ID=BSGatlas-terminator-352;Parent=BSGatlas-transcript-655,BSGatlas-transcript-656;comment="Based on: Nicolas et al. downshift, Energy: -12.6[kcal/mol]" basu168 BSGatlas UTR 620032 620096 . - . ID=BSGatlas-internal_UTR-192;Parent=BSGatlas-transcript-653,BSGatlas-transcript-654,BSGatlas-transcript-655,BSGatlas-transcript-656;comment="internal_UTR" basu168 BSGatlas gene 620097 621485 . - . ID=BSGatlas-gene-701;color=#3474B3;Name=phoB;locus_tag=BSU05740,BSU_05740;Parent=BSGatlas-operon-321 basu168 BSGatlas CDS 620097 621485 . - 0 ID=BSGatlas-gene-701_transcribed;color=#3474B3;Name=phoB;Parent=BSGatlas-transcript-653,BSGatlas-transcript-654,BSGatlas-transcript-655,BSGatlas-transcript-656;comment="alkaline phosphatase III (promiscuous,heptaprenylglyceryl phosphate is a substrate)";synonyms="phoAIII,phoB";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.3 Phosphate metabolism,SW 4 Lifestyles,SW 4.2 Sporulation,SW 4.2.1 Sporulation proteins,SW 4.2.1.4 Sporulation proteins/ other,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.1.3.1,EC-3.1.3.1";go="GO:0003824 catalytic activity,GO:0004035 alkaline phosphatase activity,GO:0008152 metabolic process,GO:0016311 dephosphorylation,GO:0016787 hydrolase activity,GO:0016791 phosphatase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-701 basu168 BSGatlas UTR 621486 621604 . - . ID=BSGatlas-5'UTR-389;Parent=BSGatlas-transcript-654,BSGatlas-transcript-656;comment="5'UTR" basu168 BSGatlas UTR 621486 621522 . - . ID=BSGatlas-5'UTR-388;Parent=BSGatlas-transcript-653,BSGatlas-transcript-655;comment="5'UTR" basu168 BSGatlas TSS 621522 621522 . - . ID=BSGatlas-TSS-469;color=#B32424;comment="Simga: A, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al upshift, PubMed: 16030210,16291680,1766385,17962296" basu168 BSGatlas TSS 621604 621604 . - . ID=BSGatlas-TSS-470;color=#B32424;comment="Simga: E, Resolution: 0, Based on: BsubCyc,DBTBS,Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: 16030210,1766385,17962296" basu168 BSGatlas operon 621713 622218 . + . ID=BSGatlas-operon-322;color=#FF00CC basu168 BSGatlas transcript 621713 622218 . + . ID=BSGatlas-transcript-657;color=#FF9900;Parent=BSGatlas-operon-322,BSGatlas-gene-702;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-471 basu168 BSGatlas exon 621713 622218 . + . ID=BSGatlas-transcript-657_exon;Parent=BSGatlas-transcript-657 basu168 BSGatlas UTR 621713 621846 . + . ID=BSGatlas-5'UTR-390;Parent=BSGatlas-transcript-657;comment="5'UTR" basu168 BSGatlas TSS 621713 621713 . + . ID=BSGatlas-TSS-471;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 621847 622218 . + . ID=BSGatlas-gene-702;color=#1E90FF;Name=fra;locus_tag=BSU05750,BSU_05750;Parent=BSGatlas-operon-322 basu168 BSGatlas CDS 621847 622218 . + 0 ID=BSGatlas-gene-702_transcribed;color=#1E90FF;Name=fra;Parent=BSGatlas-transcript-657;comment="frataxin; iron/sulfur chaperone";synonyms="fra,ydhG";subtiwiki_category="SW 2 Metabolism,SW 2.6 Additional metabolic pathways,SW 2.6.5 Iron metabolism,SW 2.6.5.3 Biosynthesis of iron-sulfur clusters";go="GO:0008198 ferrous iron binding,GO:0018283 iron incorporation into metallo-sulfur cluster";derives_from=BSGatlas-gene-702 basu168 BSGatlas terminator 622175 622219 . + . ID=BSGatlas-terminator-353;Parent=BSGatlas-transcript-657;comment="Based on: Nicolas et al. downshift, Energy: -8.1[kcal/mol]" basu168 BSGatlas operon 622270 623329 . - . ID=BSGatlas-operon-323;color=#B32496 basu168 BSGatlas transcript 622270 623329 . - . ID=BSGatlas-transcript-658;color=#B37924;Parent=BSGatlas-operon-323,BSGatlas-gene-704,BSGatlas-gene-703;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-473 basu168 BSGatlas exon 622270 623329 . - . ID=BSGatlas-transcript-658_exon;Parent=BSGatlas-transcript-658 basu168 BSGatlas terminator 622270 622314 . - . ID=BSGatlas-terminator-354;Parent=BSGatlas-transcript-658;comment="Based on: Nicolas et al. downshift, Energy: -13[kcal/mol]" basu168 BSGatlas UTR 622270 622292 . - . ID=BSGatlas-3'UTR-232;Parent=BSGatlas-transcript-658;comment="3'UTR" basu168 BSGatlas gene 622293 622790 . - . ID=BSGatlas-gene-703;color=#3474B3;Name=ydhH;locus_tag=BSU05760,BSU_05760;Parent=BSGatlas-operon-323 basu168 BSGatlas CDS 622293 622790 . - 0 ID=BSGatlas-gene-703_transcribed;color=#3474B3;Name=ydhH;Parent=BSGatlas-transcript-658;comment="conserved hypothetical protein";synonyms="ydhH";subtiwiki_category="SW 6 Groups of genes,SW 6.2 Membrane proteins,SW 6.7 Proteins of unknown function";go="GO:0016020 membrane,GO:0016021 integral component of membrane";derives_from=BSGatlas-gene-703 basu168 BSGatlas UTR 622791 622807 . - . ID=BSGatlas-internal_UTR-193;Parent=BSGatlas-transcript-658;comment="internal_UTR" basu168 BSGatlas gene 622808 623290 . - . ID=BSGatlas-gene-704;color=#3474B3;Name=ydhI;locus_tag=BSU05770,BSU_05770;Parent=BSGatlas-operon-323 basu168 BSGatlas CDS 622808 623290 . - 0 ID=BSGatlas-gene-704_transcribed;color=#3474B3;Name=ydhI;Parent=BSGatlas-transcript-658;comment="putative acetyltransferase";synonyms="ydhI";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0008080 N-acetyltransferase activity,GO:0008152 metabolic process";derives_from=BSGatlas-gene-704 basu168 BSGatlas operon 622988 624350 . + . ID=BSGatlas-operon-324;color=#FF00CC basu168 BSGatlas transcript 622988 624350 . + . ID=BSGatlas-transcript-659;color=#FF9900;Parent=BSGatlas-operon-324,BSGatlas-gene-705;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-472 basu168 BSGatlas exon 622988 624350 . + . ID=BSGatlas-transcript-659_exon;Parent=BSGatlas-transcript-659 basu168 BSGatlas UTR 622988 623372 . + . ID=BSGatlas-5'UTR-391;Parent=BSGatlas-transcript-659;comment="5'UTR" basu168 BSGatlas TSS 622988 622988 . + . ID=BSGatlas-TSS-472;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas UTR 623291 623329 . - . ID=BSGatlas-5'UTR-392;Parent=BSGatlas-transcript-658;comment="5'UTR" basu168 BSGatlas TSS 623329 623329 . - . ID=BSGatlas-TSS-473;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 623373 624350 . + . ID=BSGatlas-gene-705;color=#1E90FF;Name=ydhJ;locus_tag=BSU05780,BSU_05780;Parent=BSGatlas-operon-324 basu168 BSGatlas CDS 623373 624350 . + 0 ID=BSGatlas-gene-705_transcribed;color=#1E90FF;Name=ydhJ;Parent=BSGatlas-transcript-659;comment="putative metal-dependent phosphohydrolase";synonyms="ydhJ";subtiwiki_category="SW 6 Groups of genes,SW 6.7 Proteins of unknown function";go="GO:0003824 catalytic activity,GO:0008081 phosphoric diester hydrolase activity,GO:0008152 metabolic process,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-705 basu168 BSGatlas terminator 624308 624352 . + . ID=BSGatlas-terminator-355;Parent=BSGatlas-transcript-659;comment="Based on: Nicolas et al. downshift, Energy: -8.1[kcal/mol]" basu168 BSGatlas operon 624406 625151 . + . ID=BSGatlas-operon-325;color=#FF00CC basu168 BSGatlas transcript 624406 625151 . + . ID=BSGatlas-transcript-660;color=#FF9900;Parent=BSGatlas-operon-325,BSGatlas-gene-706;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-474 basu168 BSGatlas exon 624406 625151 . + . ID=BSGatlas-transcript-660_exon;Parent=BSGatlas-transcript-660 basu168 BSGatlas UTR 624406 624491 . + . ID=BSGatlas-5'UTR-393;Parent=BSGatlas-transcript-660;comment="5'UTR" basu168 BSGatlas TSS 624406 624406 . + . ID=BSGatlas-TSS-474;color=#FF0000;comment="Simga: B, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 624462 625151 . + . ID=BSGatlas-transcript-661;color=#FF9900;Parent=BSGatlas-operon-325,BSGatlas-gene-706;comment="Based on: BsubCyc,DBTBS,SubtiWiki";transcribed_from=BSGatlas-TSS-475 basu168 BSGatlas exon 624462 625151 . + . ID=BSGatlas-transcript-661_exon;Parent=BSGatlas-transcript-661 basu168 BSGatlas UTR 624462 624491 . + . ID=BSGatlas-5'UTR-394;Parent=BSGatlas-transcript-661;comment="5'UTR" basu168 BSGatlas TSS 624462 624462 . + . ID=BSGatlas-TSS-475;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 624492 625109 . + . ID=BSGatlas-gene-706;color=#1E90FF;Name=ydhK;locus_tag=BSU05790,BSU_05790;Parent=BSGatlas-operon-325 basu168 BSGatlas CDS 624492 625109 . + 0 ID=BSGatlas-gene-706_transcribed;color=#1E90FF;Name=ydhK;Parent=BSGatlas-transcript-660,BSGatlas-transcript-661;comment="hypothetical protein";synonyms="ydhK";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.1 General stress proteins (controlled by SigB),SW 4.3.8 Resistance against oxidative and electrophile stress";go="GO:0000303 response to superoxide";derives_from=BSGatlas-gene-706 basu168 BSGatlas UTR 625110 625151 . + . ID=BSGatlas-3'UTR-233;Parent=BSGatlas-transcript-660,BSGatlas-transcript-661;comment="3'UTR" basu168 BSGatlas terminator 625112 625151 . + . ID=BSGatlas-terminator-356;Parent=BSGatlas-transcript-660,BSGatlas-transcript-661;comment="Based on: BsubCyc,DBTBS,Nicolas et al. downshift, Energy: -13.2[kcal/mol]" basu168 BSGatlas operon 625125 626470 . - . ID=BSGatlas-operon-326;color=#B32496 basu168 BSGatlas transcript 625125 626470 . - . ID=BSGatlas-transcript-662;color=#B37924;Parent=BSGatlas-operon-326,BSGatlas-gene-707;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-476 basu168 BSGatlas exon 625125 626470 . - . ID=BSGatlas-transcript-662_exon;Parent=BSGatlas-transcript-662 basu168 BSGatlas gene 625125 626291 . - . ID=BSGatlas-gene-707;color=#3474B3;Name=pbuE;locus_tag=BSU05800,BSU_05800;Parent=BSGatlas-operon-326 basu168 BSGatlas CDS 625125 626291 . - 0 ID=BSGatlas-gene-707_transcribed;color=#3474B3;Name=pbuE;Parent=BSGatlas-transcript-662;comment="hypoxanthine efflux transporter";synonyms="pbuE,ydhL";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.4 Transporters/ other,SW 1.2.4.6 Nucleotide/ nucleoside transporter,SW 2 Metabolism,SW 2.5 Nucleotide metabolism,SW 2.5.4 Nucleotide metabolism/ other,SW 6 Groups of genes,SW 6.2 Membrane proteins";go="GO:0005886 plasma membrane,GO:0006810 transport,GO:0006863 purine nucleobase transport,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0055085 transmembrane transport";derives_from=BSGatlas-gene-707 basu168 BSGatlas terminator 625132 625176 . - . ID=BSGatlas-terminator-357;Parent=BSGatlas-transcript-662;comment="Based on: Nicolas et al. downshift, Energy: -12.4[kcal/mol]" basu168 BSGatlas UTR 626292 626470 . - . ID=BSGatlas-5'UTR-395;Parent=BSGatlas-transcript-662;comment="5'UTR" basu168 BSGatlas operon 626329 626446 . - . ID=BSGatlas-operon-327;color=#B32496 basu168 BSGatlas transcript 626329 626446 . - . ID=BSGatlas-transcript-663;color=#B37924;Parent=BSGatlas-operon-327,BSGatlas-gene-708;comment="Based on: BSGatlas" basu168 BSGatlas exon 626329 626446 . - . ID=BSGatlas-transcript-663_exon;Parent=BSGatlas-transcript-663 basu168 BSGatlas terminator 626329 626379 . - . ID=BSGatlas-terminator-358;Parent=BSGatlas-transcript-663;comment="Based on: BsubCyc,Nicolas et al. downshift, Energy: -19.4[kcal/mol]" basu168 BSGatlas UTR 626329 626345 . - . ID=BSGatlas-3'UTR-234;Parent=BSGatlas-transcript-663;comment="3'UTR" basu168 BSGatlas gene 626346 626446 . - . ID=BSGatlas-gene-708;color=#6B6B6B;Name=Purine_aswA;locus_tag=BSU_misc_RNA_8;Parent=BSGatlas-operon-327 basu168 BSGatlas riboswitch 626346 626446 . - . ID=BSGatlas-gene-708_transcribed;color=#6B6B6B;Name=Purine_aswA;Parent=BSGatlas-transcript-663;comment="adenine riboswitch";synonyms="BSU_misc_RNA_8";derives_from=BSGatlas-gene-708 basu168 BSGatlas TSS 626470 626470 . - . ID=BSGatlas-TSS-476;color=#B32424;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 626591 633878 . + . ID=BSGatlas-operon-328;color=#FF00CC basu168 BSGatlas transcript 626591 633878 . + . ID=BSGatlas-transcript-664;color=#FF9900;Parent=BSGatlas-operon-328,BSGatlas-gene-709,BSGatlas-gene-710,BSGatlas-gene-711,BSGatlas-gene-712,BSGatlas-gene-713,BSGatlas-gene-714,BSGatlas-gene-715,BSGatlas-gene-716;comment="Based on: BsubCyc,SubtiWiki";transcribed_from=BSGatlas-TSS-477 basu168 BSGatlas exon 626591 633878 . + . ID=BSGatlas-transcript-664_exon;Parent=BSGatlas-transcript-664 basu168 BSGatlas UTR 626591 626621 . + . ID=BSGatlas-5'UTR-396;Parent=BSGatlas-transcript-664;comment="5'UTR" basu168 BSGatlas TSS 626591 626591 . + . ID=BSGatlas-TSS-477;color=#FF0000;comment="Simga: A, Resolution: 0, Based on: BsubCyc,Nicolas et al upshift, PubMed: 17962296,18223082" basu168 BSGatlas gene 626622 626933 . + . ID=BSGatlas-gene-709;color=#1E90FF;Name=gmuB;locus_tag=BSU05810,BSU_05810;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 626622 626933 . + 0 ID=BSGatlas-gene-709_transcribed;color=#1E90FF;Name=gmuB;Parent=BSGatlas-transcript-664;comment="oligo-alpha-mannoside phosphotransferase systemenzyme IIB";synonyms="gmuB,ydhM";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.3 Phosphorylation on a Cys residue";go="GO:0005737 cytoplasm,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015774 polysaccharide transport,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport";derives_from=BSGatlas-gene-709 basu168 BSGatlas gene 626933 627265 . + . ID=BSGatlas-gene-710;color=#1E90FF;Name=gmuA;locus_tag=BSU05820,BSU_05820;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 626933 627265 . + 0 ID=BSGatlas-gene-710_transcribed;color=#1E90FF;Name=gmuA;Parent=BSGatlas-transcript-664;comment="oligo-alpha-mannoside phosphotransferase systemenzyme IIA";synonyms="gmuA,ydhN";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan,SW 6 Groups of genes,SW 6.4 Phosphoproteins,SW 6.4.4 Phosphorylation on a His residue";go="GO:0005351 carbohydrate:proton symporter activity,GO:0005737 cytoplasm,GO:0006810 transport,GO:0008643 carbohydrate transport,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015774 polysaccharide transport,GO:0015992 NA,GO:0016020 membrane,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-710 basu168 BSGatlas UTR 627266 627283 . + . ID=BSGatlas-internal_UTR-194;Parent=BSGatlas-transcript-664;comment="internal_UTR" basu168 BSGatlas gene 627284 628612 . + . ID=BSGatlas-gene-711;color=#1E90FF;Name=gmuC;locus_tag=BSU05830,BSU_05830;Parent=BSGatlas-operon-328 basu168 BSGatlas transcript 627284 628612 . + . ID=BSGatlas-transcript-665;color=#FF9900;Parent=BSGatlas-operon-328,BSGatlas-gene-711;comment="Based on: BsubCyc,DBTBS" basu168 BSGatlas CDS 627284 628612 . + 0 ID=BSGatlas-gene-711_transcribed;color=#1E90FF;Name=gmuC;Parent=BSGatlas-transcript-664,BSGatlas-transcript-665;comment="oligo-alpha-mannoside phosphotransferase systemenzyme IIC";synonyms="gmuC,ydhO";subtiwiki_category="SW 1 Cellular processes,SW 1.2 Transporters,SW 1.2.2 Phosphotransferase system,SW 1.2.2.2 Sugar specific PTS proteins,SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan,SW 6 Groups of genes,SW 6.11 Efp-dependent proteins";go="GO:0005351 carbohydrate:proton symporter activity,GO:0005886 plasma membrane,GO:0006810 transport,GO:0008152 metabolic process,GO:0008643 carbohydrate transport,GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity,GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system,GO:0015774 polysaccharide transport,GO:0015992 NA,GO:0016020 membrane,GO:0016021 integral component of membrane,GO:0034219 carbohydrate transmembrane transport,GO:0034220 ion transmembrane transport";derives_from=BSGatlas-gene-711 basu168 BSGatlas exon 627284 628612 . + . ID=BSGatlas-transcript-665_exon;Parent=BSGatlas-transcript-665 basu168 BSGatlas UTR 628613 628629 . + . ID=BSGatlas-internal_UTR-195;Parent=BSGatlas-transcript-664;comment="internal_UTR" basu168 BSGatlas gene 628630 630027 . + . ID=BSGatlas-gene-712;color=#1E90FF;Name=gmuD;locus_tag=BSU05840,BSU_05840;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 628630 630027 . + 0 ID=BSGatlas-gene-712_transcribed;color=#1E90FF;Name=gmuD;Parent=BSGatlas-transcript-664;comment="mannoside-phospho-beta-d-glucosidase";synonyms="gmuD,ydhP";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan";ec="3.2.1.86,EC-3.2.1.21";go="GO:0000272 polysaccharide catabolic process,GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds,GO:0005975 carbohydrate metabolic process,GO:0008152 metabolic process,GO:0008706 6-phospho-beta-glucosidase activity,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds";derives_from=BSGatlas-gene-712 basu168 BSGatlas UTR 630028 630169 . + . ID=BSGatlas-internal_UTR-196;Parent=BSGatlas-transcript-664;comment="internal_UTR" basu168 BSGatlas transcript 630116 633878 . + . ID=BSGatlas-transcript-666;color=#FF9900;Parent=BSGatlas-operon-328,BSGatlas-gene-713,BSGatlas-gene-714,BSGatlas-gene-715,BSGatlas-gene-716;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-478 basu168 BSGatlas exon 630116 633878 . + . ID=BSGatlas-transcript-666_exon;Parent=BSGatlas-transcript-666 basu168 BSGatlas UTR 630116 630169 . + . ID=BSGatlas-5'UTR-397;Parent=BSGatlas-transcript-666;comment="5'UTR" basu168 BSGatlas TSS 630116 630116 . + . ID=BSGatlas-TSS-478;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 630170 630883 . + . ID=BSGatlas-gene-713;color=#1E90FF;Name=gmuR;locus_tag=BSU05850,BSU_05850;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 630170 630883 . + 0 ID=BSGatlas-gene-713_transcribed;color=#1E90FF;Name=gmuR;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="transcriptional regulator (GntR family)";synonyms="gmuR,ydhQ";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan,SW 3 Information processing,SW 3.4 Regulation of gene expression,SW 3.4.2 Transcription factors and their control,SW 3.4.2.5 Transcription factors/ other";go="GO:0003677 DNA binding,GO:0003700 DNA-binding transcription factor activity,GO:0005737 cytoplasm,GO:0006351 transcription, DNA-templated,GO:0006355 regulation of transcription, DNA-templated";derives_from=BSGatlas-gene-713 basu168 BSGatlas UTR 630884 630911 . + . ID=BSGatlas-internal_UTR-197;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="internal_UTR" basu168 BSGatlas gene 630912 631811 . + . ID=BSGatlas-gene-714;color=#1E90FF;Name=gmuE;locus_tag=BSU05860,BSU_05860;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 630912 631811 . + 0 ID=BSGatlas-gene-714_transcribed;color=#1E90FF;Name=gmuE;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="ROK fructokinase; glucomannan utilizationprotein E";synonyms="gmuE,ydhR";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan";ec="2.7.1.4";go="GO:0000166 nucleotide binding,GO:0000272 polysaccharide catabolic process,GO:0005524 ATP binding,GO:0005975 carbohydrate metabolic process,GO:0008270 zinc ion binding,GO:0008865 fructokinase activity,GO:0016301 kinase activity,GO:0016310 phosphorylation,GO:0016740 transferase activity,GO:0046835 carbohydrate phosphorylation,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-714 basu168 BSGatlas gene 631808 632755 . + . ID=BSGatlas-gene-715;color=#1E90FF;Name=gmuF;locus_tag=BSU05870,BSU_05870;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 631808 632755 . + 0 ID=BSGatlas-gene-715_transcribed;color=#1E90FF;Name=gmuF;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="phosphohexomutase; cupin family";synonyms="gmuF,ydhS";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan";ec="5.3.1.8";go="GO:0004476 mannose-6-phosphate isomerase activity,GO:0005975 carbohydrate metabolic process,GO:0008270 zinc ion binding,GO:0016853 isomerase activity,GO:0046872 metal ion binding";derives_from=BSGatlas-gene-715 basu168 BSGatlas UTR 632756 632773 . + . ID=BSGatlas-internal_UTR-198;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="internal_UTR" basu168 BSGatlas gene 632774 633862 . + . ID=BSGatlas-gene-716;color=#1E90FF;Name=gmuG;locus_tag=BSU05880,BSU_05880;Parent=BSGatlas-operon-328 basu168 BSGatlas CDS 632774 633862 . + 0 ID=BSGatlas-gene-716_transcribed;color=#1E90FF;Name=gmuG;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="exported mannan endo-1,4-beta-mannosidase";synonyms="gmuG,ydhT";subtiwiki_category="SW 2 Metabolism,SW 2.2 Carbon metabolism,SW 2.2.2 Utilization of specific carbon sources,SW 2.2.2.25 Utilization of glucomannan,SW 6 Groups of genes,SW 6.12 Secreted proteins";ec="3.2.1.78,EC-3.2.1.78";go="GO:0000272 polysaccharide catabolic process,GO:0005576 extracellular region,GO:0005975 carbohydrate metabolic process,GO:0006080 substituted mannan metabolic process,GO:0008152 metabolic process,GO:0008810 cellulase activity,GO:0016787 hydrolase activity,GO:0016798 hydrolase activity, acting on glycosyl bonds,GO:0016985 mannan endo-1,4-beta-mannosidase activity";derives_from=BSGatlas-gene-716 basu168 BSGatlas terminator 633834 633878 . + . ID=BSGatlas-terminator-359;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="Based on: Nicolas et al. downshift, Energy: -5.4[kcal/mol]" basu168 BSGatlas UTR 633863 633878 . + . ID=BSGatlas-3'UTR-235;Parent=BSGatlas-transcript-664,BSGatlas-transcript-666;comment="3'UTR" basu168 BSGatlas operon 633871 634817 . - . ID=BSGatlas-operon-329;color=#B32496 basu168 BSGatlas transcript 633871 634817 . - . ID=BSGatlas-transcript-668;color=#B37924;Parent=BSGatlas-operon-329,BSGatlas-gene-718,BSGatlas-gene-717;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-479 basu168 BSGatlas exon 633871 634817 . - . ID=BSGatlas-transcript-668_exon;Parent=BSGatlas-transcript-668 basu168 BSGatlas transcript 633871 634651 . - . ID=BSGatlas-transcript-667;color=#B37924;Parent=BSGatlas-operon-329,BSGatlas-gene-717;comment="Based on: DBTBS" basu168 BSGatlas exon 633871 634651 . - . ID=BSGatlas-transcript-667_exon;Parent=BSGatlas-transcript-667 basu168 BSGatlas UTR 633871 633922 . - . ID=BSGatlas-3'UTR-236;Parent=BSGatlas-transcript-667,BSGatlas-transcript-668;comment="3'UTR" basu168 BSGatlas terminator 633871 633916 . - . ID=BSGatlas-terminator-360;Parent=BSGatlas-transcript-667,BSGatlas-transcript-668;comment="Based on: BsubCyc,DBTBS, Energy: -20.9[kcal/mol]" basu168 BSGatlas transcript 633923 634817 . - . ID=BSGatlas-transcript-670;color=#B37924;Parent=BSGatlas-operon-329,BSGatlas-gene-718,BSGatlas-gene-717;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-479 basu168 BSGatlas exon 633923 634817 . - . ID=BSGatlas-transcript-670_exon;Parent=BSGatlas-transcript-670 basu168 BSGatlas gene 633923 634651 . - . ID=BSGatlas-gene-717;color=#3474B3;Name=ydhUc;locus_tag=BSU05890,BSU_05890;Parent=BSGatlas-operon-329 basu168 BSGatlas transcript 633923 634651 . - . ID=BSGatlas-transcript-669;color=#B37924;Parent=BSGatlas-operon-329,BSGatlas-gene-717;comment="Based on: DBTBS" basu168 BSGatlas CDS 633923 634651 . - 0 ID=BSGatlas-gene-717_transcribed;color=#3474B3;Name=ydhUc;Parent=BSGatlas-transcript-667,BSGatlas-transcript-668,BSGatlas-transcript-669,BSGatlas-transcript-670;comment="Mn catalase fragment; C-terminal part of YhdU";synonyms="ydhU,ydhU/1";subtiwiki_category="SW 4 Lifestyles,SW 4.3 Coping with stress,SW 4.3.9 Resistance against oxidative and electrophile stress/ based on similarity,SW 6 Groups of genes,SW 6.10 Pseudogenes";derives_from=BSGatlas-gene-717 basu168 BSGatlas exon 633923 634651 . - . ID=BSGatlas-transcript-669_exon;Parent=BSGatlas-transcript-669 basu168 BSGatlas terminator 633951 633995 . - . ID=BSGatlas-terminator-361;Parent=BSGatlas-transcript-669,BSGatlas-transcript-670;comment="Based on: Nicolas et al. downshift, Energy: -17.6[kcal/mol]" basu168 BSGatlas transcript 634651 634817 . - . ID=BSGatlas-transcript-671;color=#B37924;Parent=BSGatlas-operon-329,BSGatlas-gene-718;comment="Based on: SubtiWiki";transcribed_from=BSGatlas-TSS-479 basu168 BSGatlas exon 634651 634817 . - . ID=BSGatlas-transcript-671_exon;Parent=BSGatlas-transcript-671 basu168 BSGatlas gene 634651 634776 . - . ID=BSGatlas-gene-718;color=#3474B3;Name=ydhUn;locus_tag=BSU05899,BSU_05899;Parent=BSGatlas-operon-329 basu168 BSGatlas CDS 634651 634776 . - 0 ID=BSGatlas-gene-718_transcribed;color=#3474B3;Name=ydhUn;Parent=BSGatlas-transcript-668,BSGatlas-transcript-670,BSGatlas-transcript-671;comment="Mn catalase fragment; N-terminal part of YhdU";synonyms="ydhU/2";subtiwiki_category="SW 6 Groups of genes,SW 6.10 Pseudogenes";derives_from=BSGatlas-gene-718 basu168 BSGatlas UTR 634777 634817 . - . ID=BSGatlas-5'UTR-398;Parent=BSGatlas-transcript-668,BSGatlas-transcript-670,BSGatlas-transcript-671;comment="5'UTR" basu168 BSGatlas TSS 634817 634817 . - . ID=BSGatlas-TSS-479;color=#B32424;comment="Simga: GF, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 634920 635186 . + . ID=BSGatlas-operon-330;color=#FF00CC basu168 BSGatlas transcript 634920 635186 . + . ID=BSGatlas-transcript-672;color=#FF9900;Parent=BSGatlas-operon-330,BSGatlas-gene-719;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-480 basu168 BSGatlas exon 634920 635186 . + . ID=BSGatlas-transcript-672_exon;Parent=BSGatlas-transcript-672 basu168 BSGatlas UTR 634920 635108 . + . ID=BSGatlas-5'UTR-399;Parent=BSGatlas-transcript-672;comment="5'UTR" basu168 BSGatlas TSS 634920 634920 . + . ID=BSGatlas-TSS-480;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al upshift, PubMed: " basu168 BSGatlas operon 634944 635438 . - . ID=BSGatlas-operon-331;color=#B32496 basu168 BSGatlas transcript 634944 635438 . - . ID=BSGatlas-transcript-673;color=#B37924;Parent=BSGatlas-operon-331,BSGatlas-gene-721;comment="Based on: BSGatlas" basu168 BSGatlas exon 634944 635438 . - . ID=BSGatlas-transcript-673_exon;Parent=BSGatlas-transcript-673 basu168 BSGatlas UTR 634944 635370 . - . ID=BSGatlas-3'UTR-237;Parent=BSGatlas-transcript-673;comment="3'UTR" basu168 BSGatlas terminator 634944 634988 . - . ID=BSGatlas-terminator-362;Parent=BSGatlas-transcript-673;comment="Based on: Nicolas et al. downshift, Energy: -9[kcal/mol]" basu168 BSGatlas transcript 634978 635186 . + . ID=BSGatlas-transcript-674;color=#FF9900;Parent=BSGatlas-operon-330,BSGatlas-gene-719;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-481 basu168 BSGatlas exon 634978 635186 . + . ID=BSGatlas-transcript-674_exon;Parent=BSGatlas-transcript-674 basu168 BSGatlas UTR 634978 635108 . + . ID=BSGatlas-5'UTR-400;Parent=BSGatlas-transcript-674;comment="5'UTR" basu168 BSGatlas TSS 634978 634978 . + . ID=BSGatlas-TSS-481;color=#FF0000;comment="Simga: ?, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas transcript 635022 635186 . + . ID=BSGatlas-transcript-675;color=#FF9900;Parent=BSGatlas-operon-330,BSGatlas-gene-719;comment="Based on: BSGatlas";transcribed_from=BSGatlas-TSS-482 basu168 BSGatlas exon 635022 635186 . + . ID=BSGatlas-transcript-675_exon;Parent=BSGatlas-transcript-675 basu168 BSGatlas UTR 635022 635108 . + . ID=BSGatlas-5'UTR-401;Parent=BSGatlas-transcript-675;comment="5'UTR" basu168 BSGatlas TSS 635022 635022 . + . ID=BSGatlas-TSS-482;color=#FF0000;comment="Simga: A, Resolution: 22, Based on: Nicolas et al 5' UTR start,Nicolas et al upshift, PubMed: " basu168 BSGatlas gene 635109 635186 . + . ID=BSGatlas-gene-719;color=#FFFF00;Name=trnE-Arg;locus_tag=BSU_tRNA_79,BSU_TRNA_79;Parent=BSGatlas-operon-330 basu168 BSGatlas tRNA 635109 635186 . + . ID=BSGatlas-gene-719_transcribed;color=#FFFF00;Name=trnE-Arg;Parent=BSGatlas-transcript-672,BSGatlas-transcript-674,BSGatlas-transcript-675;comment="tRNA-Arg";synonyms="trnE-Arg";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-719 basu168 BSGatlas gene 635199 635273 . + . ID=BSGatlas-gene-720;color=#FFFF00;Name=trnE-Gly;locus_tag=BSU_tRNA_80,BSU_TRNA_80 basu168 BSGatlas tRNA 635199 635273 . + . ID=BSGatlas-gene-720_transcribed;color=#FFFF00;Name=trnE-Gly;comment="tRNA-Gly";synonyms="trnE-Gly";subtiwiki_category="SW 3 Information processing,SW 3.3 Protein synthesis, modification and degradation,SW 3.3.1 Translation,SW 3.3.1.7 tRNA";derives_from=BSGatlas-gene-720 basu168 BSGatlas gene 635371 635438 . - . ID=BSGatlas-gene-721;color=#24B324;Name=Bacillaceae-1;Parent=BSGatlas-operon-331 basu168 BSGatlas sRNA 635371 635438 . - . ID=BSGatlas-gene-721_transcribed;color=#24B324;Name=Bacillaceae-1;Parent=BSGatlas-transcript-673;derives_from=BSGatlas-gene-721 basu168 BSGatlas operon 635433 640254 . + . ID=BSGatlas-operon-332;color=#FF00CC basu168 BSGatlas transcript 635433 640254 . + . ID=BSGatlas-transcript-676;color=#FF99