CMfinder Encode Scan - Outdated

This resource is outdated. We refer to the page "Structural RNA alignments in vertebrate genomes"

This webpage is a interface to the database containing the candidates from the scan described here:

E. Torarinsson, Z. Yao, E. D. Wiklund, J. B. Bramsen, C. Hansen, J. Kjems, N. Tommerup, W. L. Ruzzo and J. Gorodkin. 2007. Comparative genomics beyond sequence based alignments: RNA structures in the ENCODE region. In press.

It is possible to browse the individual predicted motifs, the candidates (where we cluster adjacent and sense/antisense motifs) and also to search the database with various criteria.