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sample BED format
#chr start end id number of reads strand chr1 20229 20366 GSM34290_325* 50$ + chr1 20230 20369 GSM34290_328* 13$ +* id is comprised of an [identifier]_[number of times the read is mapped (optional)]
We decided to use input in BED format due to two main reasons:
A summary of preprocessing results are shown below