Details

miRNA name:hsa-miR-545-3p
Sponge candidate annotation [?]:protein_coding:PPP2R2D
Accessibility and target profiles
(UCSC genome browser) [?]:		chr10:133771747-133773035(+)     
Cluster size (# of binding sites):32          [Alignment details]
Cluster size cutoff [?]:18
SNP density ratio [?]: 0.574
Fraction of binding sites
within exon [?]:		1
Conservation [?]:-0.209

Binding energy [?] for all binding sites within the sponge candidate


Red points show the binding energy for each predicted binding site in the sponge candidate, as predicted by RIsearch2. Additionally, for miRNAs with experimentally verified targets in RAIN, we ran RIsearch2 for the given miRNA against 3′ UTRs of verified targets, and show a box plot of the distribution of those predicted binding energies.

Fraction of paired nucleotides [?] for each binding site within the sponge candidate


Red points show the fraction of paired nucleotides for each predicted binding site in the sponge candidate. Additionally, for miRNAs with experimentally verified targets in RAIN, we ran RIsearch2 for the given miRNA against 3′ UTRs of verified targets, and show the distribution of those results as box plot.