| Lib name | Tissue | Description | # Reads |
| Amn | Amnion (S) | --- | 2394 |
| Aor | Aorta (M) | --- | 5121 |
| Bla | Bladder (M) | --- | 8042 |
| Nbm | Bone marrow (S) | F115 days, bone marrow | 10068 |
| Cbe | Brain (M) | Cerebellum | 4180 |
| Cbr* | Brain (B) | Brain (cortex) | 7814 |
| Fco | Brain (M) | Frontal cortex | 6361 |
| Hyp | Brain (S) | Hypothalamus | 7001 |
| Pgl | Brain (M) | Pituitary gland | 8440 |
| Ecc | Brain (S) | F50 days,cortex | 8693 |
| Ece | Brain (S) | F50 days, cerebellum | 4361 |
| Fce | Brain (S) | F100 days, cerebellum | 3682 |
| Fcc | Brain (S) | F107 days, cortex cerebri | 5056 |
| Fhi | Brain (S) | F107 days, hippocampus | 5897 |
| Cbl* | Haemopoetic (B) | Blood | 8711 |
| Jca | Cartillage (S) | Joint capsule | 8775 |
| Nca | Cartillage (S) | F115 days, cartillage | 7306 |
| Pan* | Endocrine glands (M) | Pancreas | 4238 |
| Ret | Eye (M) | Retina | 7768 |
| Eye | Eye (S) | F50 days, eye | 5865 |
| Fat | Fat (M) | Fat | 6783 |
| Che | Heart (B) | --- | 7336 |
| Hea | Heart (M) | --- | 4890 |
| Hlv | Heart (S) | Left ventricle | 7181 |
| Cje | Intestine (B) | Jejunum | 6052 |
| Col | Intestine (S) | Large intest, colon ascendens | 5128 |
| Duo | Intestine (S) | Small intest, duodenum | 5787 |
| Ill | Intestine (S) | Small intest, illeum | 5695 |
| Jej | Intestine (S) | Small intest, jejunum | 10109 |
| Lin | Intestine (M) | Large intestine | 6868 |
| Sin | Intestine (M) | Small intestine | 5716 |
| Eje | Intestine (S) | F50 days, jejunum | 10118 |
| Nco | Intestine (S) | F115 days, colon | 6183 |
| Nje | Intestine (S) | F115 days, jejunum | 6027 |
| Cki | Kidney (B) | --- | 6052 |
| Kid | Kidney (M) | --- | 7708 |
| Cli | Liver (B) | --- | 6544 |
| Liv | Liver (M) | --- | 6836 |
| Eli | Liver (S) | F50 days, liver | 6587 |
| Fli | Liver (S) | F100 days, liver | 4929 |
| Clu | Lung (B) | --- | 8358 |
| Lun‡ | Lung (M) | --- | 6645 |
| Elu | Lung (S) | F50 days, lung | 2595 |
| Nlu | Lung (S) | F115 days, lung | 5217 |
| Cly | Lymphatic gland (B) | --- | 8289 |
| Lyg | Lymphatic gland (M) | --- | 7513 |
| Lnt | Lymphatic gland (S) | --- | 7027 |
| Cga | Mammary gland (B) | --- | 3583 |
| Mcp | Mammary gland (S) | Mammae, collostrum prod | 5860 |
| Mga | Mammary gland (M) | 7 days after weaning | 6242 |
| Mgm* | Mammary gland (M) | 14 days after birth | 5545 |
| Mgp | Mammary gland (M) | 7 days pre birth | 4335 |
| Med | Mediastinum (S) | --- | 8602 |
| Bfe | Muscles (M) | M. biceps femoris | 6673 |
| Ctl* | Muscles (B) | Tenderloin | 6533 |
| Isp | Muscles (M) | M. infraspinatus | 6650 |
| Ldo | Muscles (M) | M. longissimus dorsi | 10309 |
| Mas | Muscles (S) | M. masseter | 4755 |
| Sme | Muscles (M) | M. semimembranousus | 3274 |
| Ssp | Muscles (M) | M. supraspinatus | 7379 |
| Ste | Muscles (M) | M. semitendinosus | 7396 |
| Tbr | Muscles (M) | M. triceps brachii | 6486 |
| Vin | Muscles (M) | M. vastus intermedius | 3007 |
| Ese | Muscles (S) | F50 days, M. semitendinousus | 7905 |
| Nms | Muscles (S) | F115 days, M. semitendinousus | 4676 |
| Gul | Oesophagus (M) | --- | 5631 |
| Ova | Ovary (M) | --- | 7744 |
| Cov | Ovary (B) | --- | 7567 |
| Pla† | Placenta (M) | --- | 7481 |
| Pro | Prostata (M) | --- | 1953 |
| Rec | Rectum (M) | --- | 5778 |
| Cmu | Rhinal mucosal membrane (B) | --- | 5365 |
| Nmm | Rhinal mucosal membrane (S) | F115 days, mucosal membrane | 7530 |
| Sag | Salivary gland (M) | --- | 5473 |
| Csk | Skin (B) | --- | 7105 |
| Ski | Skin (M) | --- | 6815 |
| Ton | Skin (S) | Tip of tongue, mucosa | 5698 |
| Eep | Skin (S) | F50, epidermis | 8159 |
| Eru | Skin (S) | F50, regio umbilicalis | 8330 |
| Nep | Skin (S) | F115 days, epidermis | 5437 |
| Spc | Spinal cord (M) | Spinal cord | 8821 |
| Ebs | Spinal cord (S) | F50 days, brain stem | 8453 |
| Fbs | Spinal cord (S) | F107 days, brain stem | 5703 |
| Spl | Spleen (M) | --- | 6984 |
| Csp | Spleen (B) | --- | 6204 |
| Cst | Stomach (B) | --- | 7141 |
| Sto | Stomach (M) | --- | 5561 |
| Sug | Suprarenal glands (M) | --- | 7856 |
| Cag | Suprarenal glands (B) | Adrenal gland | 6614 |
| Cte | Testicle (B) | --- | 3416 |
| Tes | Testicle (M) | --- | 4812 |
| Cty | Thyroid glands (B) | --- | 9608 |
| Thg | Thyroid glands (M) | --- | 7887 |
| Pty | Thyroid glands (S) | Piglet 2 days, thymus | 7007 |
| Fty | Thyroid glands (S) | F100 days, thymus | 5687 |
| Tra | Trachea (M) | --- | 8124 |
| Ute | Uterus (S) | --- | 7531 |
| Cut | Uterus (B) | --- | 5885 |
*Libraries of bad quality in repsect to expression analysis.
†Normalized library.
‡Likely to be heavily contaminated with liver ESTs.