Lib name | Tissue | Description | # Reads |
Amn | Amnion (S) | --- | 2394 |
Aor | Aorta (M) | --- | 5121 |
Bla | Bladder (M) | --- | 8042 |
Nbm | Bone marrow (S) | F115 days, bone marrow | 10068 |
Cbe | Brain (M) | Cerebellum | 4180 |
Cbr* | Brain (B) | Brain (cortex) | 7814 |
Fco | Brain (M) | Frontal cortex | 6361 |
Hyp | Brain (S) | Hypothalamus | 7001 |
Pgl | Brain (M) | Pituitary gland | 8440 |
Ecc | Brain (S) | F50 days,cortex | 8693 |
Ece | Brain (S) | F50 days, cerebellum | 4361 |
Fce | Brain (S) | F100 days, cerebellum | 3682 |
Fcc | Brain (S) | F107 days, cortex cerebri | 5056 |
Fhi | Brain (S) | F107 days, hippocampus | 5897 |
Cbl* | Haemopoetic (B) | Blood | 8711 |
Jca | Cartillage (S) | Joint capsule | 8775 |
Nca | Cartillage (S) | F115 days, cartillage | 7306 |
Pan* | Endocrine glands (M) | Pancreas | 4238 |
Ret | Eye (M) | Retina | 7768 |
Eye | Eye (S) | F50 days, eye | 5865 |
Fat | Fat (M) | Fat | 6783 |
Che | Heart (B) | --- | 7336 |
Hea | Heart (M) | --- | 4890 |
Hlv | Heart (S) | Left ventricle | 7181 |
Cje | Intestine (B) | Jejunum | 6052 |
Col | Intestine (S) | Large intest, colon ascendens | 5128 |
Duo | Intestine (S) | Small intest, duodenum | 5787 |
Ill | Intestine (S) | Small intest, illeum | 5695 |
Jej | Intestine (S) | Small intest, jejunum | 10109 |
Lin | Intestine (M) | Large intestine | 6868 |
Sin | Intestine (M) | Small intestine | 5716 |
Eje | Intestine (S) | F50 days, jejunum | 10118 |
Nco | Intestine (S) | F115 days, colon | 6183 |
Nje | Intestine (S) | F115 days, jejunum | 6027 |
Cki | Kidney (B) | --- | 6052 |
Kid | Kidney (M) | --- | 7708 |
Cli | Liver (B) | --- | 6544 |
Liv | Liver (M) | --- | 6836 |
Eli | Liver (S) | F50 days, liver | 6587 |
Fli | Liver (S) | F100 days, liver | 4929 |
Clu | Lung (B) | --- | 8358 |
Lun‡ | Lung (M) | --- | 6645 |
Elu | Lung (S) | F50 days, lung | 2595 |
Nlu | Lung (S) | F115 days, lung | 5217 |
Cly | Lymphatic gland (B) | --- | 8289 |
Lyg | Lymphatic gland (M) | --- | 7513 |
Lnt | Lymphatic gland (S) | --- | 7027 |
Cga | Mammary gland (B) | --- | 3583 |
Mcp | Mammary gland (S) | Mammae, collostrum prod | 5860 |
Mga | Mammary gland (M) | 7 days after weaning | 6242 |
Mgm* | Mammary gland (M) | 14 days after birth | 5545 |
Mgp | Mammary gland (M) | 7 days pre birth | 4335 |
Med | Mediastinum (S) | --- | 8602 |
Bfe | Muscles (M) | M. biceps femoris | 6673 |
Ctl* | Muscles (B) | Tenderloin | 6533 |
Isp | Muscles (M) | M. infraspinatus | 6650 |
Ldo | Muscles (M) | M. longissimus dorsi | 10309 |
Mas | Muscles (S) | M. masseter | 4755 |
Sme | Muscles (M) | M. semimembranousus | 3274 |
Ssp | Muscles (M) | M. supraspinatus | 7379 |
Ste | Muscles (M) | M. semitendinosus | 7396 |
Tbr | Muscles (M) | M. triceps brachii | 6486 |
Vin | Muscles (M) | M. vastus intermedius | 3007 |
Ese | Muscles (S) | F50 days, M. semitendinousus | 7905 |
Nms | Muscles (S) | F115 days, M. semitendinousus | 4676 |
Gul | Oesophagus (M) | --- | 5631 |
Ova | Ovary (M) | --- | 7744 |
Cov | Ovary (B) | --- | 7567 |
Pla† | Placenta (M) | --- | 7481 |
Pro | Prostata (M) | --- | 1953 |
Rec | Rectum (M) | --- | 5778 |
Cmu | Rhinal mucosal membrane (B) | --- | 5365 |
Nmm | Rhinal mucosal membrane (S) | F115 days, mucosal membrane | 7530 |
Sag | Salivary gland (M) | --- | 5473 |
Csk | Skin (B) | --- | 7105 |
Ski | Skin (M) | --- | 6815 |
Ton | Skin (S) | Tip of tongue, mucosa | 5698 |
Eep | Skin (S) | F50, epidermis | 8159 |
Eru | Skin (S) | F50, regio umbilicalis | 8330 |
Nep | Skin (S) | F115 days, epidermis | 5437 |
Spc | Spinal cord (M) | Spinal cord | 8821 |
Ebs | Spinal cord (S) | F50 days, brain stem | 8453 |
Fbs | Spinal cord (S) | F107 days, brain stem | 5703 |
Spl | Spleen (M) | --- | 6984 |
Csp | Spleen (B) | --- | 6204 |
Cst | Stomach (B) | --- | 7141 |
Sto | Stomach (M) | --- | 5561 |
Sug | Suprarenal glands (M) | --- | 7856 |
Cag | Suprarenal glands (B) | Adrenal gland | 6614 |
Cte | Testicle (B) | --- | 3416 |
Tes | Testicle (M) | --- | 4812 |
Cty | Thyroid glands (B) | --- | 9608 |
Thg | Thyroid glands (M) | --- | 7887 |
Pty | Thyroid glands (S) | Piglet 2 days, thymus | 7007 |
Fty | Thyroid glands (S) | F100 days, thymus | 5687 |
Tra | Trachea (M) | --- | 8124 |
Ute | Uterus (S) | --- | 7531 |
Cut | Uterus (B) | --- | 5885 |
*Libraries of bad quality in repsect to expression analysis.
†Normalized library.
‡Likely to be heavily contaminated with liver ESTs.