Non-Coding RNA Search

Cow genome map


           Conread name:
           Emb1-C0005181_A14
        

               Conread position:
               132-389
               

               Cow position:
               chr1:64218220-64218485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               32, 167
               

               Conread position:
               139-466
               

               Cow position:
               chr1:63504536-63504205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               28, 148
               

               Conread position:
               144-465
               

               Cow position:
               chr1:70533742-70534066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               15, 75
               

               Conread position:
               146-466
               

               Cow position:
               chr1:93110420-93110755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               73, 210
               

               Conread position:
               146-475
               

               Cow position:
               chr1:78791115-78791451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               76, 72
               

               Conread position:
               147-471
               

               Cow position:
               chr1:20000542-20000889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 214
               

               Conread position:
               151-464
               

               Cow position:
               chr1:21933994-21934307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               12, 92
               

               Conread position:
               153-302
               

               Cow position:
               chr1:83926576-83926414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               153-445
               

               Cow position:
               chr1:81582303-81582008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               11, 198
               

               Conread position:
               155-366
               

               Cow position:
               chr1:12430088-12430298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               155-417
               

               Cow position:
               chr1:15028940-15028665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 200
               

               Conread position:
               155-418
               

               Cow position:
               chr1:30066805-30066532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               71, 63
               

               Conread position:
               155-443
               

               Cow position:
               chr1:60509281-60509567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               155-461
               

               Cow position:
               chr1:85141551-85141860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               72, 63
               

               Conread position:
               155-464
               

               Cow position:
               chr1:44747044-44746734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               73, 189
               

               Conread position:
               155-465
               

               Cow position:
               chr1:8869492-8869792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               155-465
               

               Cow position:
               chr1:72732220-72731906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               155-466
               

               Cow position:
               chr1:70435190-70434870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               10, 199
               

               Conread position:
               155-467
               

               Cow position:
               chr1:85029140-85028824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 197
               

               Conread position:
               155-470
               

               Cow position:
               chr1:26688288-26688612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               73, 184
               

               Conread position:
               155-471
               

               Cow position:
               chr1:71136335-71136014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               155-475
               

               Cow position:
               chr1:541978-541660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 187
               

               Conread position:
               155-475
               

               Cow position:
               chr1:42555446-42555118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               155-475
               

               Cow position:
               chr1:58825724-58825401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               98, 63
               

               Conread position:
               155-475
               

               Cow position:
               chr1:74946936-74947270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               87, 34
               

               Conread position:
               155-475
               

               Cow position:
               chr1:76096620-76096294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               16, 109
               

               Conread position:
               156-400
               

               Cow position:
               chr1:51565712-51565465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               159-442
               

               Cow position:
               chr1:26427681-26427972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               223
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               67, 60
               

               Conread position:
               162-465
               

               Cow position:
               chr1:66355537-66355845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               64, 156
               

               Conread position:
               162-465
               

               Cow position:
               chr1:95764916-95765217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               62, 56
               

               Conread position:
               162-475
               

               Cow position:
               chr1:53039532-53039847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               57, 89
               

               Conread position:
               163-314
               

               Cow position:
               chr1:79663258-79663423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               163-319
               

               Cow position:
               chr1:22153859-22153703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               146, 127
               

               Conread position:
               163-415
               

               Cow position:
               chr1:82880826-82880562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               56, 188
               

               Conread position:
               163-416
               

               Cow position:
               chr1:15902671-15902408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               56, 157
               

               Conread position:
               163-431
               

               Cow position:
               chr1:43547874-43548154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               60, 16
               

               Conread position:
               163-442
               

               Cow position:
               chr1:43855484-43855191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               56, 177
               

               Conread position:
               163-450
               

               Cow position:
               chr1:20099542-20099253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               15, 48
               

               Conread position:
               163-454
               

               Cow position:
               chr1:73761195-73761479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               163-464
               

               Cow position:
               chr1:35170503-35170206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 55
               

               Conread position:
               163-464
               

               Cow position:
               chr1:61721212-61721509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               163-465
               

               Cow position:
               chr1:34686360-34686062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               17, 157
               

               Conread position:
               163-465
               

               Cow position:
               chr1:42873782-42874079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               163-465
               

               Cow position:
               chr1:71045930-71045622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 106
               

               Conread position:
               163-466
               

               Cow position:
               chr1:23100077-23099766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               56, 181
               

               Conread position:
               163-466
               

               Cow position:
               chr1:43340438-43340752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               68, 145
               

               Conread position:
               163-466
               

               Cow position:
               chr1:54478511-54478191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 188
               

               Conread position:
               163-466
               

               Cow position:
               chr1:82378967-82378655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               56, 113
               

               Conread position:
               163-470
               

               Cow position:
               chr1:32341020-32341342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 155
               

               Conread position:
               163-471
               

               Cow position:
               chr1:21787519-21787192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               163-471
               

               Cow position:
               chr1:40600220-40599905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               69, 28
               

               Conread position:
               163-471
               

               Cow position:
               chr1:77462534-77462222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               163-473
               

               Cow position:
               chr1:19466231-19465917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               46, 183
               

               Conread position:
               163-475
               

               Cow position:
               chr1:69415534-69415861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               56, 188
               

               Conread position:
               163-475
               

               Cow position:
               chr1:96472610-96472303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               52, 100
               

               Conread position:
               163-476
               

               Cow position:
               chr1:24406719-24407030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               56, 51
               

               Conread position:
               163-476
               

               Cow position:
               chr1:39224744-39225070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               56, 193
               

               Conread position:
               163-477
               

               Cow position:
               chr1:68863214-68862889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               56, 149
               

               Conread position:
               164-392
               

               Cow position:
               chr1:88338844-88338604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               164-422
               

               Cow position:
               chr1:30504658-30504409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               65, 19
               

               Conread position:
               164-455
               

               Cow position:
               chr1:3607989-3607687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               55, 164
               

               Conread position:
               164-458
               

               Cow position:
               chr1:52052539-52052846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 186
               

               Conread position:
               164-461
               

               Cow position:
               chr1:74955838-74956150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               58, 149
               

               Conread position:
               164-461
               

               Cow position:
               chr1:93810587-93810301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 47
               

               Conread position:
               164-465
               

               Cow position:
               chr1:25793264-25793567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 147
               

               Conread position:
               164-465
               

               Cow position:
               chr1:30047433-30047726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               164-465
               

               Cow position:
               chr1:42545606-42545919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               164-465
               

               Cow position:
               chr1:64189676-64189367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               53, 188
               

               Conread position:
               164-471
               

               Cow position:
               chr1:6166426-6166103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               57, 155
               

               Conread position:
               164-471
               

               Cow position:
               chr1:46218744-46218443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               63, 145
               

               Conread position:
               164-471
               

               Cow position:
               chr1:53495618-53495329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               88, 19
               

               Conread position:
               164-471
               

               Cow position:
               chr1:95177112-95176801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 120
               

               Conread position:
               164-473
               

               Cow position:
               chr1:43822557-43822259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               146, 48
               

               Conread position:
               164-475
               

               Cow position:
               chr1:19144741-19145065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 145
               

               Conread position:
               164-475
               

               Cow position:
               chr1:56643429-56643734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               64, 79
               

               Conread position:
               164-475
               

               Cow position:
               chr1:72285911-72286201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               145, 17
               

               Conread position:
               164-477
               

               Cow position:
               chr1:31413802-31414104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 162
               

               Conread position:
               165-328
               

               Cow position:
               chr1:95229156-95229333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 17
               

               Conread position:
               165-392
               

               Cow position:
               chr1:39121674-39121899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               36, 55
               

               Conread position:
               165-454
               

               Cow position:
               chr1:77720067-77720357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               54, 82
               

               Conread position:
               165-454
               

               Cow position:
               chr1:100324565-100324865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               58, 161
               

               Conread position:
               165-466
               

               Cow position:
               chr1:72011629-72011943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               54, 195
               

               Conread position:
               165-467
               

               Cow position:
               chr1:20544460-20544161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               165-471
               

               Cow position:
               chr1:14980945-14981259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               54, 169
               

               Conread position:
               165-471
               

               Cow position:
               chr1:26729868-26729586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               144, 54
               

               Conread position:
               165-471
               

               Cow position:
               chr1:31189941-31190246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 23
               

               Conread position:
               165-471
               

               Cow position:
               chr1:51981382-51981093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               144, 53
               

               Conread position:
               165-475
               

               Cow position:
               chr1:9534335-9534028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               61, 20
               

               Conread position:
               165-475
               

               Cow position:
               chr1:37309357-37309658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               144, 48
               

               Conread position:
               165-475
               

               Cow position:
               chr1:56477778-56477445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 195
               

               Conread position:
               166-472
               

               Cow position:
               chr1:90595385-90595694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               51, 99
               

               Conread position:
               168-443
               

               Cow position:
               chr1:5636882-5637187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               168-465
               

               Cow position:
               chr1:62732736-62732445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 21
               

               Conread position:
               169-465
               

               Cow position:
               chr1:68845317-68845618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               50, 139
               

               Conread position:
               170-433
               

               Cow position:
               chr1:28177169-28176908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               35, 119
               

               Conread position:
               170-471
               

               Cow position:
               chr1:3923641-3923933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               172-471
               

               Cow position:
               chr1:90413542-90413241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               90, 129
               

               Conread position:
               172-471
               

               Cow position:
               chr1:92963563-92963260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               47, 160
               

               Conread position:
               175-465
               

               Cow position:
               chr1:64572672-64572381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               175-466
               

               Cow position:
               chr1:50045965-50045666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               55, 143
               

               Conread position:
               183-471
               

               Cow position:
               chr1:6941614-6941327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               126, 157
               

               Conread position:
               183-471
               

               Cow position:
               chr1:6959027-6958740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               126, 157
               

               Conread position:
               183-471
               

               Cow position:
               chr1:52039781-52039498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               124, 22
               

               Conread position:
               185-465
               

               Cow position:
               chr1:75933418-75933140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               221
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               65, 31
               

               Conread position:
               186-465
               

               Cow position:
               chr1:75347778-75347488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               42, 166
               

               Conread position:
               187-349
               

               Cow position:
               chr1:62142331-62142505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               32, 159
               

               Conread position:
               187-465
               

               Cow position:
               chr1:29975454-29975733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 22
               

               Conread position:
               187-465
               

               Cow position:
               chr1:81319438-81319163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               41, 18
               

               Conread position:
               187-475
               

               Cow position:
               chr1:31390435-31390736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               32, 165
               

               Conread position:
               188-464
               

               Cow position:
               chr1:15691481-15691206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               42, 20
               

               Conread position:
               189-477
               

               Cow position:
               chr1:41735470-41735770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               54, 180
               

               Conread position:
               192-471
               

               Cow position:
               chr1:69539830-69539559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 39
               

               Conread position:
               195-466
               

               Cow position:
               chr1:66430425-66430167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               229, 112
               

               Conread position:
               197-443
               

               Cow position:
               chr1:98360271-98360509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               19, 82
               

               Conread position:
               197-477
               

               Cow position:
               chr1:36932288-36932008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               198-471
               

               Cow position:
               chr1:48444066-48444332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               111, 14
               

               Conread position:
               199-477
               

               Cow position:
               chr1:102647147-102647418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               110, 25
               

               Conread position:
               200-477
               

               Cow position:
               chr1:22526007-22525734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               201-466
               

               Cow position:
               chr1:70538740-70538474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 140
               

               Conread position:
               206-475
               

               Cow position:
               chr1:84241011-84240748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               86, 12
               

               Conread position:
               208-453
               

               Cow position:
               chr1:26943426-26943189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               99, 17
               

               Conread position:
               210-417
               

               Cow position:
               chr1:8347242-8347039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               210-440
               

               Cow position:
               chr1:48769921-48769694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               99, 132
               

               Conread position:
               210-466
               

               Cow position:
               chr1:19885500-19885255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               100, 79
               

               Conread position:
               210-475
               

               Cow position:
               chr1:86110625-86110878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               99, 66
               

               Conread position:
               212-466
               

               Cow position:
               chr1:82337663-82337914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               212-471
               

               Cow position:
               chr1:86682439-86682701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 101
               

               Conread position:
               213-389
               

               Cow position:
               chr1:95974516-95974338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               213-401
               

               Cow position:
               chr1:78067954-78068133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               96, 15
               

               Conread position:
               213-402
               

               Cow position:
               chr1:45223697-45223510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-409
               

               Cow position:
               chr1:68672486-68672676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               213-418
               

               Cow position:
               chr1:50992049-50991849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               97, 123
               

               Conread position:
               213-418
               

               Cow position:
               chr1:95153338-95153134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-419
               

               Cow position:
               chr1:46031074-46030873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               96, 5
               

               Conread position:
               213-419
               

               Cow position:
               chr1:100474350-100474145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-420
               

               Cow position:
               chr1:49824948-49825157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               87, 132
               

               Conread position:
               213-420
               

               Cow position:
               chr1:58037134-58036931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               213-433
               

               Cow position:
               chr1:22824021-22823804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-433
               

               Cow position:
               chr1:42541714-42541495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-441
               

               Cow position:
               chr1:70416644-70416864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-443
               

               Cow position:
               chr1:3352584-3352805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               106, 94
               

               Conread position:
               213-443
               

               Cow position:
               chr1:32001205-32001432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-443
               

               Cow position:
               chr1:69694877-69695103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               104, 94
               

               Conread position:
               213-443
               

               Cow position:
               chr1:81580293-81580063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               213-444
               

               Cow position:
               chr1:56225901-56225681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-444
               

               Cow position:
               chr1:79660286-79660513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               96, 119
               

               Conread position:
               213-446
               

               Cow position:
               chr1:98512042-98511813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               96, 25
               

               Conread position:
               213-452
               

               Cow position:
               chr1:72813732-72813492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-454
               

               Cow position:
               chr1:38277913-38278160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               96, 19
               

               Conread position:
               213-454
               

               Cow position:
               chr1:48730716-48730948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               107, 93
               

               Conread position:
               213-454
               

               Cow position:
               chr1:81613505-81613267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 140
               

               Conread position:
               213-454
               

               Cow position:
               chr1:91874801-91875031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               96, 51
               

               Conread position:
               213-455
               

               Cow position:
               chr1:80422388-80422153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               95, 81
               

               Conread position:
               213-455
               

               Cow position:
               chr1:87072811-87072581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               211, 19
               

               Conread position:
               213-460
               

               Cow position:
               chr1:72105522-72105286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-460
               

               Cow position:
               chr1:87095098-87095358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 20
               

               Conread position:
               213-460
               

               Cow position:
               chr1:100569272-100569024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               213-461
               

               Cow position:
               chr1:8731-8493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               99, 126
               

               Conread position:
               213-461
               

               Cow position:
               chr1:45555481-45555236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               97, 18
               

               Conread position:
               213-461
               

               Cow position:
               chr1:88913435-88913190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               97, 61
               

               Conread position:
               213-462
               

               Cow position:
               chr1:66898381-66898627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 125
               

               Conread position:
               213-463
               

               Cow position:
               chr1:78697656-78697905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               118, 91
               

               Conread position:
               213-464
               

               Cow position:
               chr1:7971528-7971290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               213-464
               

               Cow position:
               chr1:34771387-34771635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               94, 124
               

               Conread position:
               213-464
               

               Cow position:
               chr1:45019684-45019938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               213-464
               

               Cow position:
               chr1:47658461-47658217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               213-464
               

               Cow position:
               chr1:55357179-55357417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               211, 82
               

               Conread position:
               213-464
               

               Cow position:
               chr1:99642253-99642497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               97, 125
               

               Conread position:
               213-465
               

               Cow position:
               chr1:1956219-1956460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 37
               

               Conread position:
               213-465
               

               Cow position:
               chr1:45007584-45007337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-465
               

               Cow position:
               chr1:53370199-53369946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-466
               

               Cow position:
               chr1:18780213-18780467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 101
               

               Conread position:
               213-466
               

               Cow position:
               chr1:20667627-20667875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               96, 15
               

               Conread position:
               213-466
               

               Cow position:
               chr1:26201348-26201087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               96, 81
               

               Conread position:
               213-466
               

               Cow position:
               chr1:39068840-39069088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               213-466
               

               Cow position:
               chr1:47233362-47233612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               96, 127
               

               Conread position:
               213-466
               

               Cow position:
               chr1:47886364-47886622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               213-466
               

               Cow position:
               chr1:48105320-48105567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               96, 51
               

               Conread position:
               213-466
               

               Cow position:
               chr1:51446001-51445746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               96, 15
               

               Conread position:
               213-466
               

               Cow position:
               chr1:54258682-54258430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               96, 48
               

               Conread position:
               213-466
               

               Cow position:
               chr1:80336133-80336376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               10, 19
               

               Conread position:
               213-466
               

               Cow position:
               chr1:86073712-86073461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 121
               

               Conread position:
               213-466
               

               Cow position:
               chr1:88618712-88618462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               8, 19
               

               Conread position:
               213-466
               

               Cow position:
               chr1:93554952-93554710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-466
               

               Cow position:
               chr1:100706242-100705996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               211, 95
               

               Conread position:
               213-467
               

               Cow position:
               chr1:40530987-40531251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-469
               

               Cow position:
               chr1:7023237-7022981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-471
               

               Cow position:
               chr1:4032748-4032487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-471
               

               Cow position:
               chr1:4291280-4291020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               89, 76
               

               Conread position:
               213-471
               

               Cow position:
               chr1:10633162-10632910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               96, 127
               

               Conread position:
               213-471
               

               Cow position:
               chr1:12464548-12464804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 133
               

               Conread position:
               213-471
               

               Cow position:
               chr1:18936722-18936968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               211, 25
               

               Conread position:
               213-471
               

               Cow position:
               chr1:22192885-22192625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               97, 166
               

               Conread position:
               213-471
               

               Cow position:
               chr1:24534141-24534392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               96, 76
               

               Conread position:
               213-471
               

               Cow position:
               chr1:28563453-28563707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 76
               

               Conread position:
               213-471
               

               Cow position:
               chr1:31348321-31348579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               7, 20
               

               Conread position:
               213-471
               

               Cow position:
               chr1:34159952-34159696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-471
               

               Cow position:
               chr1:36875142-36874876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               103, 82
               

               Conread position:
               213-471
               

               Cow position:
               chr1:36998301-36998054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               96, 123
               

               Conread position:
               213-471
               

               Cow position:
               chr1:38754039-38753779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               10, 19
               

               Conread position:
               213-471
               

               Cow position:
               chr1:43352540-43352795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-471
               

               Cow position:
               chr1:50930863-50931114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               108, 76
               

               Conread position:
               213-471
               

               Cow position:
               chr1:55428840-55429094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-471
               

               Cow position:
               chr1:68618817-68619072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               89, 15
               

               Conread position:
               213-471
               

               Cow position:
               chr1:68817683-68817937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               79, 89
               

               Conread position:
               213-471
               

               Cow position:
               chr1:72068718-72068977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-471
               

               Cow position:
               chr1:73960816-73960567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               96, 48
               

               Conread position:
               213-471
               

               Cow position:
               chr1:78809992-78809742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 20
               

               Conread position:
               213-471
               

               Cow position:
               chr1:81913039-81913286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               213-471
               

               Cow position:
               chr1:84255883-84255620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               82, 96
               

               Conread position:
               213-471
               

               Cow position:
               chr1:91066036-91066291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-471
               

               Cow position:
               chr1:96081595-96081346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               96, 43
               

               Conread position:
               213-471
               

               Cow position:
               chr1:97696860-97696602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               97, 76
               

               Conread position:
               213-471
               

               Cow position:
               chr1:101632221-101632477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-471
               

               Cow position:
               chr1:101822399-101822642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               108, 15
               

               Conread position:
               213-472
               

               Cow position:
               chr1:97232076-97231818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               213-473
               

               Cow position:
               chr1:15334007-15333736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               106, 82
               

               Conread position:
               213-473
               

               Cow position:
               chr1:17196511-17196771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               81, 96
               

               Conread position:
               213-473
               

               Cow position:
               chr1:43311655-43311915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               39, 97
               

               Conread position:
               213-473
               

               Cow position:
               chr1:68253711-68253451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               213-473
               

               Cow position:
               chr1:100552091-100551825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               77, 132
               

               Conread position:
               213-474
               

               Cow position:
               chr1:85549962-85550219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               213-475
               

               Cow position:
               chr1:10778679-10778424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               213-475
               

               Cow position:
               chr1:24132947-24133200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 76
               

               Conread position:
               213-475
               

               Cow position:
               chr1:24876378-24876122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               105, 124
               

               Conread position:
               213-475
               

               Cow position:
               chr1:31607773-31608041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               213-475
               

               Cow position:
               chr1:43388936-43389195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               94, 73
               

               Conread position:
               213-475
               

               Cow position:
               chr1:43872204-43872478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               96, 61
               

               Conread position:
               213-475
               

               Cow position:
               chr1:48581244-48580988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               96, 18
               

               Conread position:
               213-475
               

               Cow position:
               chr1:64302127-64302391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               76, 128
               

               Conread position:
               213-475
               

               Cow position:
               chr1:69264924-69264673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               107, 97
               

               Conread position:
               213-475
               

               Cow position:
               chr1:89076517-89076780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               95, 107
               

               Conread position:
               213-475
               

               Cow position:
               chr1:98594681-98594423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               202, 98
               

               Conread position:
               213-477
               

               Cow position:
               chr1:20950829-20950577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               97, 25
               

               Conread position:
               213-477
               

               Cow position:
               chr1:49433148-49433406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               213-477
               

               Cow position:
               chr1:71078845-71079101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 15
               

               Conread position:
               213-477
               

               Cow position:
               chr1:98413888-98413621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               214-443
               

               Cow position:
               chr1:30417933-30418149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               210, 95
               

               Conread position:
               214-448
               

               Cow position:
               chr1:6826184-6826405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               92, 70
               

               Conread position:
               214-471
               

               Cow position:
               chr1:67305127-67305379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               6, 24
               

               Conread position:
               215-443
               

               Cow position:
               chr1:54156620-54156843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               7, 69
               

               Conread position:
               215-443
               

               Cow position:
               chr1:61542805-61543029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               94, 75
               

               Conread position:
               215-466
               

               Cow position:
               chr1:8128855-8129100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               97, 13
               

               Conread position:
               215-466
               

               Cow position:
               chr1:89741881-89742130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               6, 17
               

               Conread position:
               216-419
               

               Cow position:
               chr1:46783424-46783233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               91, 12
               

               Conread position:
               216-466
               

               Cow position:
               chr1:26702095-26702341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               93, 12
               

               Conread position:
               216-471
               

               Cow position:
               chr1:76470766-76470514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               53, 36
               

               Conread position:
               216-471
               

               Cow position:
               chr1:94226442-94226689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               97, 120
               

               Conread position:
               216-475
               

               Cow position:
               chr1:77880622-77880878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               91, 13
               

               Conread position:
               217-475
               

               Cow position:
               chr1:53425289-53425032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               199
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               77, 124
               

               Conread position:
               218-443
               

               Cow position:
               chr1:68826802-68827016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               207, 10
               

               Conread position:
               218-455
               

               Cow position:
               chr1:22729169-22728928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 126
               

               Conread position:
               218-470
               

               Cow position:
               chr1:44125527-44125784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               103, 83
               

               Conread position:
               218-471
               

               Cow position:
               chr1:19481969-19482213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               6, 116
               

               Conread position:
               218-471
               

               Cow position:
               chr1:51394528-51394283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               91, 10
               

               Conread position:
               218-471
               

               Cow position:
               chr1:57575653-57575897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               85, 91
               

               Conread position:
               218-471
               

               Cow position:
               chr1:59519027-59518782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               11, 65
               

               Conread position:
               218-471
               

               Cow position:
               chr1:68763577-68763820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               206, 93
               

               Conread position:
               218-475
               

               Cow position:
               chr1:100800464-100800212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               82, 120
               

               Conread position:
               218-477
               

               Cow position:
               chr1:61391678-61391938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 21
               

               Conread position:
               219-451
               

               Cow position:
               chr1:21577918-21577689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               90, 14
               

               Conread position:
               219-454
               

               Cow position:
               chr1:20104375-20104146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               81, 9
               

               Conread position:
               219-460
               

               Cow position:
               chr1:26615965-26616198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               88, 12
               

               Conread position:
               219-461
               

               Cow position:
               chr1:83748051-83747818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               90, 9
               

               Conread position:
               219-466
               

               Cow position:
               chr1:3962578-3962825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               94, 9
               

               Conread position:
               219-466
               

               Cow position:
               chr1:52956370-52956120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               33, 9
               

               Conread position:
               219-466
               

               Cow position:
               chr1:60281482-60281237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 10
               

               Conread position:
               219-466
               

               Cow position:
               chr1:100741387-100741154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               152, 9
               

               Conread position:
               219-467
               

               Cow position:
               chr1:78838904-78838664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               219-477
               

               Cow position:
               chr1:51417880-51417627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               90, 12
               

               Conread position:
               220-432
               

               Cow position:
               chr1:82513244-82513456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               87, 128
               

               Conread position:
               220-466
               

               Cow position:
               chr1:81355595-81355839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               93, 8
               

               Conread position:
               220-471
               

               Cow position:
               chr1:3138024-3137789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               9, 70
               

               Conread position:
               220-477
               

               Cow position:
               chr1:4414100-4414357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               51, 81
               

               Conread position:
               220-477
               

               Cow position:
               chr1:102349641-102349899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               101, 69
               

               Conread position:
               221-404
               

               Cow position:
               chr1:186163-186348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 122
               

               Conread position:
               221-419
               

               Cow position:
               chr1:65103733-65103533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 76
               

               Conread position:
               221-429
               

               Cow position:
               chr1:30189259-30189049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               80, 7
               

               Conread position:
               221-432
               

               Cow position:
               chr1:55819159-55818961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               100, 68
               

               Conread position:
               221-434
               

               Cow position:
               chr1:25281550-25281762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               89, 7
               

               Conread position:
               221-444
               

               Cow position:
               chr1:56618548-56618763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               88, 7
               

               Conread position:
               221-464
               

               Cow position:
               chr1:6304755-6304996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               23, 112
               

               Conread position:
               221-464
               

               Cow position:
               chr1:12978789-12978549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 7
               

               Conread position:
               221-464
               

               Cow position:
               chr1:63434698-63434937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               88, 119
               

               Conread position:
               221-465
               

               Cow position:
               chr1:56225576-56225334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-466
               

               Cow position:
               chr1:37706870-37707098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               100, 7
               

               Conread position:
               221-466
               

               Cow position:
               chr1:39417997-39418255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               26, 248
               

               Conread position:
               221-466
               

               Cow position:
               chr1:41047196-41047433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-466
               

               Cow position:
               chr1:53458802-53458563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-466
               

               Cow position:
               chr1:79164976-79165219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               221-466
               

               Cow position:
               chr1:90868329-90868572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               18, 123
               

               Conread position:
               221-466
               

               Cow position:
               chr1:95057163-95056922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               32, 73
               

               Conread position:
               221-466
               

               Cow position:
               chr1:97090433-97090194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-466
               

               Cow position:
               chr1:99609475-99609234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               88, 10
               

               Conread position:
               221-471
               

               Cow position:
               chr1:1165704-1165467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               88, 32
               

               Conread position:
               221-471
               

               Cow position:
               chr1:35162517-35162269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               88, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:41056785-41056545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               137, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:44507079-44506829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               221-471
               

               Cow position:
               chr1:70312684-70312943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               88, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:75744969-75744722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               88, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:88652743-88652492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               76, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:89449007-89448759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-471
               

               Cow position:
               chr1:101551570-101551323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               89, 26
               

               Conread position:
               221-473
               

               Cow position:
               chr1:89350072-89349822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-474
               

               Cow position:
               chr1:25383775-25383523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               221-474
               

               Cow position:
               chr1:89509814-89510063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               74, 7
               

               Conread position:
               221-475
               

               Cow position:
               chr1:53374546-53374284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               31, 114
               

               Conread position:
               221-477
               

               Cow position:
               chr1:100400089-100400346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               78, 21
               

               Conread position:
               222-454
               

               Cow position:
               chr1:71665820-71666064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               25, 123
               

               Conread position:
               222-465
               

               Cow position:
               chr1:83582826-83583066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               85, 121
               

               Conread position:
               222-471
               

               Cow position:
               chr1:41115612-41115853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               99, 84
               

               Conread position:
               222-471
               

               Cow position:
               chr1:92996785-92997037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               87, 10
               

               Conread position:
               227-393
               

               Cow position:
               chr1:97962742-97962582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 10
               

               Conread position:
               228-454
               

               Cow position:
               chr1:79640187-79640412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               83, 113
               

               Conread position:
               228-455
               

               Cow position:
               chr1:27145552-27145773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               81, 41
               

               Conread position:
               228-466
               

               Cow position:
               chr1:45288770-45289005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               81, 114
               

               Conread position:
               228-466
               

               Cow position:
               chr1:81868628-81868859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               81, 109
               

               Conread position:
               228-466
               

               Cow position:
               chr1:101834916-101834691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               88, 67
               

               Conread position:
               228-472
               

               Cow position:
               chr1:31272341-31272580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               81, 109
               

               Conread position:
               228-475
               

               Cow position:
               chr1:24542469-24542724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               80, 236
               

               Conread position:
               228-475
               

               Cow position:
               chr1:39426904-39427135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               79, 108
               

               Conread position:
               228-475
               

               Cow position:
               chr1:56635199-56634955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 110
               

               Conread position:
               229-409
               

               Cow position:
               chr1:98576147-98575969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               80, 108
               

               Conread position:
               229-454
               

               Cow position:
               chr1:73196129-73196353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               47, 115
               

               Conread position:
               229-471
               

               Cow position:
               chr1:21836031-21835807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               196, 86
               

               Conread position:
               229-471
               

               Cow position:
               chr1:23512560-23512793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               229-471
               

               Cow position:
               chr1:77683452-77683219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               80, 111
               

               Conread position:
               229-471
               

               Cow position:
               chr1:89341880-89342133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 238
               

               Conread position:
               229-475
               

               Cow position:
               chr1:90422984-90423229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               89, 7
               

               Conread position:
               230-451
               

               Cow position:
               chr1:2975895-2976116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               83, 90
               

               Conread position:
               230-460
               

               Cow position:
               chr1:41181944-41181718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               194, 74
               

               Conread position:
               230-461
               

               Cow position:
               chr1:43703508-43703279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               79, 112
               

               Conread position:
               230-465
               

               Cow position:
               chr1:90975989-90976219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               77, 112
               

               Conread position:
               230-471
               

               Cow position:
               chr1:484368-484607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               109, 79
               

               Conread position:
               230-471
               

               Cow position:
               chr1:31934606-31934373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               80, 110
               

               Conread position:
               230-471
               

               Cow position:
               chr1:74084092-74084335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               56, 81
               

               Conread position:
               230-471
               

               Cow position:
               chr1:98551819-98551578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               79, 125
               

               Conread position:
               230-477
               

               Cow position:
               chr1:96964415-96964171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               76, 100
               

               Conread position:
               231-459
               

               Cow position:
               chr1:92369835-92369606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               236-477
               

               Cow position:
               chr1:16766995-16767226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               85, 67
               

               Conread position:
               237-415
               

               Cow position:
               chr1:75250202-75250029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               237-453
               

               Cow position:
               chr1:7443068-7442861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               183, 70
               

               Conread position:
               237-461
               

               Cow position:
               chr1:89786001-89785781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               72, 53
               

               Conread position:
               237-461
               

               Cow position:
               chr1:95558129-95557908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               72, 102
               

               Conread position:
               237-471
               

               Cow position:
               chr1:64804010-64804242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               70, 103
               

               Conread position:
               238-402
               

               Cow position:
               chr1:73936054-73936221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               66, 110
               

               Conread position:
               238-447
               

               Cow position:
               chr1:101866406-101866612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               71, 103
               

               Conread position:
               238-448
               

               Cow position:
               chr1:102266177-102266384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               71, 99
               

               Conread position:
               238-451
               

               Cow position:
               chr1:91811868-91811668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               238-454
               

               Cow position:
               chr1:86340377-86340594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               95, 72
               

               Conread position:
               238-456
               

               Cow position:
               chr1:724831-724613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 104
               

               Conread position:
               238-464
               

               Cow position:
               chr1:78079810-78079596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 100
               

               Conread position:
               238-465
               

               Cow position:
               chr1:72034833-72035058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               69, 94
               

               Conread position:
               238-465
               

               Cow position:
               chr1:89443388-89443609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               76, 21
               

               Conread position:
               238-466
               

               Cow position:
               chr1:5023671-5023889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               71, 99
               

               Conread position:
               238-466
               

               Cow position:
               chr1:7350639-7350409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               71, 119
               

               Conread position:
               238-466
               

               Cow position:
               chr1:55146889-55146672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               60, 30
               

               Conread position:
               238-471
               

               Cow position:
               chr1:41697146-41696920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               83, 52
               

               Conread position:
               238-471
               

               Cow position:
               chr1:65318666-65318437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               71, 94
               

               Conread position:
               238-471
               

               Cow position:
               chr1:81228242-81228478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 161
               

               Conread position:
               238-471
               

               Cow position:
               chr1:81563836-81563598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               71, 223
               

               Conread position:
               238-471
               

               Cow position:
               chr1:87197911-87197689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               69, 108
               

               Conread position:
               238-471
               

               Cow position:
               chr1:90641119-90640890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               71, 33
               

               Conread position:
               238-475
               

               Cow position:
               chr1:4374246-4374486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               76, 102
               

               Conread position:
               238-475
               

               Cow position:
               chr1:5580147-5579912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               83, 52
               

               Conread position:
               238-475
               

               Cow position:
               chr1:53623047-53622815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               83, 69
               

               Conread position:
               238-475
               

               Cow position:
               chr1:70026254-70026491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               59, 100
               

               Conread position:
               238-475
               

               Cow position:
               chr1:101267913-101268151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               71, 52
               

               Conread position:
               238-477
               

               Cow position:
               chr1:33206789-33207016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               238-477
               

               Cow position:
               chr1:85411668-85411432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               18, 29
               

               Conread position:
               239-443
               

               Cow position:
               chr1:874744-874539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               70, 98
               

               Conread position:
               239-465
               

               Cow position:
               chr1:16855609-16855823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               70, 98
               

               Conread position:
               239-466
               

               Cow position:
               chr1:29916504-29916273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               239-466
               

               Cow position:
               chr1:52995115-52994894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               16, 102
               

               Conread position:
               239-475
               

               Cow position:
               chr1:44769019-44769255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               70, 101
               

               Conread position:
               240-475
               

               Cow position:
               chr1:101946625-101946854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               240-477
               

               Cow position:
               chr1:21955284-21955518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               69, 96
               

               Conread position:
               241-471
               

               Cow position:
               chr1:85647692-85647920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               59, 68
               

               Conread position:
               242-444
               

               Cow position:
               chr1:45285751-45285546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               243-464
               

               Cow position:
               chr1:68951711-68951496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               243-466
               

               Cow position:
               chr1:4243247-4243476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               61, 111
               

               Conread position:
               243-466
               

               Cow position:
               chr1:42175813-42175591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               57, 66
               

               Conread position:
               243-471
               

               Cow position:
               chr1:91023381-91023606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               78, 66
               

               Conread position:
               243-477
               

               Cow position:
               chr1:51770178-51769938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               61, 86
               

               Conread position:
               245-465
               

               Cow position:
               chr1:46839687-46839466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 14
               

               Conread position:
               246-467
               

               Cow position:
               chr1:12870921-12871144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 116
               

               Conread position:
               247-443
               

               Cow position:
               chr1:87936980-87936788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               63, 89
               

               Conread position:
               247-449
               

               Cow position:
               chr1:92434082-92433883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 83
               

               Conread position:
               247-467
               

               Cow position:
               chr1:89485662-89485439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               55, 89
               

               Conread position:
               247-471
               

               Cow position:
               chr1:46030279-46030495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               67, 93
               

               Conread position:
               247-471
               

               Cow position:
               chr1:53520993-53520769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 91
               

               Conread position:
               247-471
               

               Cow position:
               chr1:71119603-71119374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               247-471
               

               Cow position:
               chr1:98311154-98310927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               247-475
               

               Cow position:
               chr1:57297564-57297331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               62, 89
               

               Conread position:
               247-475
               

               Cow position:
               chr1:85597020-85596796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               177, 60
               

               Conread position:
               248-413
               

               Cow position:
               chr1:61560642-61560807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               61, 103
               

               Conread position:
               248-454
               

               Cow position:
               chr1:33409544-33409750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               248-454
               

               Cow position:
               chr1:46035870-46036082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               248-460
               

               Cow position:
               chr1:96478781-96478565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               62, 87
               

               Conread position:
               248-471
               

               Cow position:
               chr1:6788202-6788424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               59, 86
               

               Conread position:
               248-471
               

               Cow position:
               chr1:9470316-9470536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               7, 90
               

               Conread position:
               248-471
               

               Cow position:
               chr1:72103931-72103708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               63, 91
               

               Conread position:
               248-471
               

               Cow position:
               chr1:91816690-91816908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 91
               

               Conread position:
               249-466
               

               Cow position:
               chr1:62519443-62519224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               60, 101
               

               Conread position:
               250-443
               

               Cow position:
               chr1:14308953-14309146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               59, 89
               

               Conread position:
               250-460
               

               Cow position:
               chr1:78092116-78091905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               250-460
               

               Cow position:
               chr1:90864214-90864423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               47, 62
               

               Conread position:
               250-465
               

               Cow position:
               chr1:49317417-49317629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               59, 90
               

               Conread position:
               250-471
               

               Cow position:
               chr1:91800521-91800740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               50, 31
               

               Conread position:
               250-477
               

               Cow position:
               chr1:20205106-20204882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               251-465
               

               Cow position:
               chr1:55135914-55135701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               72, 57
               

               Conread position:
               253-471
               

               Cow position:
               chr1:80900196-80899973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               254-466
               

               Cow position:
               chr1:42398116-42398330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               56, 85
               

               Conread position:
               254-474
               

               Cow position:
               chr1:84283148-84282929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               170, 53
               

               Conread position:
               255-454
               

               Cow position:
               chr1:84905989-84906190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 121
               

               Conread position:
               255-466
               

               Cow position:
               chr1:79278373-79278580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               255-471
               

               Cow position:
               chr1:51654498-51654272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               55, 211
               

               Conread position:
               255-475
               

               Cow position:
               chr1:182878-182662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 95
               

               Conread position:
               258-460
               

               Cow position:
               chr1:95035281-95035482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               49, 38
               

               Conread position:
               258-471
               

               Cow position:
               chr1:22448514-22448725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               23, 15
               

               Conread position:
               258-475
               

               Cow position:
               chr1:6794854-6795077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 37
               

               Conread position:
               259-440
               

               Cow position:
               chr1:648395-648216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               51, 80
               

               Conread position:
               259-461
               

               Cow position:
               chr1:95654643-95654840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               50, 81
               

               Conread position:
               259-471
               

               Cow position:
               chr1:63390697-63390912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               51, 80
               

               Conread position:
               259-471
               

               Cow position:
               chr1:69127096-69127304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               51, 80
               

               Conread position:
               259-471
               

               Cow position:
               chr1:82443385-82443595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               262-465
               

               Cow position:
               chr1:31234871-31235060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               59, 15
               

               Conread position:
               264-443
               

               Cow position:
               chr1:47790597-47790773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               46, 76
               

               Conread position:
               264-471
               

               Cow position:
               chr1:1991353-1991559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               29, 76
               

               Conread position:
               264-475
               

               Cow position:
               chr1:7609685-7609473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               45, 74
               

               Conread position:
               264-477
               

               Cow position:
               chr1:34856563-34856781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 76
               

               Conread position:
               265-460
               

               Cow position:
               chr1:25387114-25386923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               265-475
               

               Cow position:
               chr1:53595383-53595178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               175, 69
               

               Conread position:
               266-462
               

               Cow position:
               chr1:8984619-8984816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               43, 75
               

               Conread position:
               266-465
               

               Cow position:
               chr1:76019633-76019825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               266-471
               

               Cow position:
               chr1:54199316-54199522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               43, 70
               

               Conread position:
               266-471
               

               Cow position:
               chr1:96304906-96305114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               36, 163
               

               Conread position:
               266-475
               

               Cow position:
               chr1:51968525-51968314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               43, 80
               

               Conread position:
               267-465
               

               Cow position:
               chr1:24235457-24235649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               268-438
               

               Cow position:
               chr1:61723958-61724128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               17, 8
               

               Conread position:
               268-471
               

               Cow position:
               chr1:24445567-24445765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               269-471
               

               Cow position:
               chr1:61564853-61564658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               54, 33
               

               Conread position:
               271-453
               

               Cow position:
               chr1:93228583-93228405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               38, 69
               

               Conread position:
               274-466
               

               Cow position:
               chr1:100770697-100770884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               276-471
               

               Cow position:
               chr1:45535760-45535567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               276-475
               

               Cow position:
               chr1:70028633-70028435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               281-475
               

               Cow position:
               chr1:32244351-32244548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               284-475
               

               Cow position:
               chr1:43447784-43447974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               286-475
               

               Cow position:
               chr1:57635505-57635318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               23, 56
               

               Conread position:
               290-455
               

               Cow position:
               chr1:22394842-22394671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               293-471
               

               Cow position:
               chr1:47009069-47008893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               16, 47
               

               Conread position:
               294-475
               

               Cow position:
               chr1:57263957-57264138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               15, 46
               

               Conread position:
               297-466
               

               Cow position:
               chr1:81471165-81470999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               298-471
               

               Cow position:
               chr1:51684838-51684662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               11, 45
               

               Conread position:
               300-471
               

               Cow position:
               chr1:11770265-11770429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               300-471
               

               Cow position:
               chr1:99095391-99095223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               307-466
               

               Cow position:
               chr1:3244871-3244720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               308-473
               

               Cow position:
               chr1:84239089-84239254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               13, 31
               

               Conread position:
               309-471
               

               Cow position:
               chr1:85826366-85826205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               310-471
               

               Cow position:
               chr1:56674110-56674265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               114, 27
               

               Conread position:
               310-475
               

               Cow position:
               chr1:29900949-29901114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 101
               

               Conread position:
               312-471
               

               Cow position:
               chr1:12595885-12596042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 21
               

               Conread position:
               315-471
               

               Cow position:
               chr1:5872956-5873110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               32, 22
               

               Conread position:
               315-471
               

               Cow position:
               chr1:78184708-78184548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               44, 25
               

               Conread position:
               316-471
               

               Cow position:
               chr1:78794726-78794874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               328-471
               

               Cow position:
               chr1:65909531-65909388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               43, 25
               

               Conread position:
               334-471
               

               Cow position:
               chr1:22689072-22688940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               30, 79
               

               Conread position:
               337-460
               

               Cow position:
               chr1:96184024-96184145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               88, 16
               

               Conread position:
               337-467
               

               Cow position:
               chr1:4294049-4293920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               87, 11
               

               Conread position:
               337-470
               

               Cow position:
               chr1:45673707-45673571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               9, 122
               

               Conread position:
               337-471
               

               Cow position:
               chr1:33811922-33811791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               87, 20
               

               Conread position:
               348-477
               

               Cow position:
               chr1:98396975-98397105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 14
               

               Conread position:
               352-471
               

               Cow position:
               chr1:24655943-24655823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               101
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               353-471
               

               Cow position:
               chr1:15311849-15311731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 8
               

               Conread position:
               353-475
               

               Cow position:
               chr1:63905493-63905618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               354-475
               

               Cow position:
               chr1:80555215-80555336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 103
               

               Conread position:
               358-477
               

               Cow position:
               chr1:6961884-6961765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               35, 100
               

               Conread position:
               359-471
               

               Cow position:
               chr1:3243912-3243799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 98
               

               Conread position:
               359-475
               

               Cow position:
               chr1:73536712-73536594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 99
               

               Conread position:
               365-471
               

               Cow position:
               chr1:75967399-75967293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               89
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               59, 91
               

               Conread position:
               367-469
               

               Cow position:
               chr1:97806754-97806652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               87
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               57, 89
               

               Conread position:
               370-471
               

               Cow position:
               chr1:89729011-89729112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               86
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               54, 86
               

               Conread position:
               377-467
               

               Cow position:
               chr1:44136510-44136600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               92
               

               Alignm identity:
               81
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               47, 77
               

               Conread position:
               378-475
               

               Cow position:
               chr1:30504426-30504327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               84
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               128-466
               

               Cow position:
               chr10:6531965-6532315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               36, 53
               

               Conread position:
               139-466
               

               Cow position:
               chr10:22479554-22479887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               25, 166
               

               Conread position:
               140-465
               

               Cow position:
               chr10:9568460-9568785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               110, 5
               

               Conread position:
               142-466
               

               Cow position:
               chr10:24786278-24785941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               18, 199
               

               Conread position:
               143-466
               

               Cow position:
               chr10:22321679-22321359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               74, 38
               

               Conread position:
               144-466
               

               Cow position:
               chr10:29689168-29689482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               72, 7
               

               Conread position:
               145-301
               

               Cow position:
               chr10:20399562-20399408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               14, 112
               

               Conread position:
               145-466
               

               Cow position:
               chr10:64838868-64839179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               172, 72
               

               Conread position:
               155-411
               

               Cow position:
               chr10:48178512-48178245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               64, 39
               

               Conread position:
               155-419
               

               Cow position:
               chr10:58935014-58935285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               71, 144
               

               Conread position:
               155-434
               

               Cow position:
               chr10:53179439-53179154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 9
               

               Conread position:
               155-454
               

               Cow position:
               chr10:37884639-37884946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 165
               

               Conread position:
               155-465
               

               Cow position:
               chr10:41984732-41985050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               65, 177
               

               Conread position:
               155-465
               

               Cow position:
               chr10:45606279-45606591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               72, 50
               

               Conread position:
               155-466
               

               Cow position:
               chr10:23096626-23096942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               155-471
               

               Cow position:
               chr10:1088175-1087852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               13, 79
               

               Conread position:
               155-471
               

               Cow position:
               chr10:35904671-35904993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               155-475
               

               Cow position:
               chr10:38513312-38512997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               132, 56
               

               Conread position:
               155-476
               

               Cow position:
               chr10:35911607-35911921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               71, 148
               
158-461UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr10:19704360-19704664 (view  custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 196
               
158-461UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr10:56705434-56705748 (view  custom track)

               
               
               
Alignm length: 322

               
               
               
Alignm identity: 223

               
               
               
Alignm E-value: 3e-31

               
               
               
Alignm gaps (pig, cow): 59, 147
158-471UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr10:12486414-12486095 (view  custom track)

               
               
               
Alignm length: 332

               
               
               
Alignm identity: 249

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 67, 22

               
               
               Conread position:162-454
               
               
               Cow position:chr10:47789167-47788876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 157

               
               
               Conread position:162-465
               
               
               Cow position:chr10:6038196-6038498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:162-466
               
               
               Cow position:chr10:16683663-16683977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:162-471
               
               
               Cow position:chr10:48741016-48741328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:162-475
               
               
               Cow position:chr10:10124491-10124167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:162-475
               
               
               Cow position:chr10:23948771-23949097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:162-475
               
               
               Cow position:chr10:62517030-62516702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:163-418
               
               
               Cow position:chr10:19098994-19098722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 146

               
               
               Conread position:163-418
               
               
               Cow position:chr10:66311358-66311097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:163-439
               
               
               Cow position:chr10:31528132-31527842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 195

               
               
               Conread position:163-453
               
               
               Cow position:chr10:67020762-67020474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:163-454
               
               
               Cow position:chr10:69567986-69567702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:163-461
               
               
               Cow position:chr10:2849494-2849196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:163-464
               
               
               Cow position:chr10:55849490-55849195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:163-465
               
               
               Cow position:chr10:2201970-2202287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr10:9341589-9341896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 141

               
               
               Conread position:163-466
               
               
               Cow position:chr10:21447768-21448061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:163-466
               
               
               Cow position:chr10:28152231-28152543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr10:34898121-34897826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr10:49045983-49045675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:163-470
               
               
               Cow position:chr10:33240535-33240845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-470
               
               
               Cow position:chr10:54947979-54948304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:163-471
               
               
               Cow position:chr10:721455-721133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 143

               
               
               Conread position:163-471
               
               
               Cow position:chr10:6235294-6235596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:163-471
               
               
               Cow position:chr10:23576705-23576374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 199

               
               
               Conread position:163-471
               
               
               Cow position:chr10:25479238-25478933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:163-472
               
               
               Cow position:chr10:29339251-29339554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:163-475
               
               
               Cow position:chr10:24422007-24422336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 220

               
               
               Conread position:163-475
               
               
               Cow position:chr10:25150051-25149721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:163-475
               
               
               Cow position:chr10:26145264-26145592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:163-475
               
               
               Cow position:chr10:28038791-28039114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr10:51220930-51221245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:163-475
               
               
               Cow position:chr10:65071971-65072287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:163-477
               
               
               Cow position:chr10:22527755-22528079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):77, 183

               
               
               Conread position:164-393
               
               
               Cow position:chr10:37707234-37706995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 190

               
               
               Conread position:164-415
               
               
               Cow position:chr10:15391635-15391380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:164-432
               
               
               Cow position:chr10:30741520-30741251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:164-443
               
               
               Cow position:chr10:43439018-43438733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:164-465
               
               
               Cow position:chr10:6011906-6012196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):252, 56

               
               
               Conread position:164-466
               
               
               Cow position:chr10:1749712-1749415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:164-466
               
               
               Cow position:chr10:59153517-59153818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:164-469
               
               
               Cow position:chr10:37708862-37709200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 207

               
               
               Conread position:164-471
               
               
               Cow position:chr10:54477241-54476938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:164-475
               
               
               Cow position:chr10:3999054-3998731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:164-477
               
               
               Cow position:chr10:24753300-24752976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:165-420
               
               
               Cow position:chr10:12100398-12100666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:165-465
               
               
               Cow position:chr10:19590619-19590924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:165-467
               
               
               Cow position:chr10:32584057-32583747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 183

               
               
               Conread position:165-471
               
               
               Cow position:chr10:13390903-13391218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 197

               
               
               Conread position:165-471
               
               
               Cow position:chr10:17863728-17863419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:166-390
               
               
               Cow position:chr10:17553323-17553095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:166-461
               
               
               Cow position:chr10:21015845-21016148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:166-465
               
               
               Cow position:chr10:48255080-48255386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 187

               
               
               Conread position:167-407
               
               
               Cow position:chr10:65558552-65558800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:167-418
               
               
               Cow position:chr10:26620419-26620675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:167-465
               
               
               Cow position:chr10:46184865-46184587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):142, 40

               
               
               Conread position:167-465
               
               
               Cow position:chr10:52589538-52589855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 188

               
               
               Conread position:167-471
               
               
               Cow position:chr10:37668018-37668326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 180

               
               
               Conread position:168-406
               
               
               Cow position:chr10:22708340-22708101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):59, 179

               
               
               Conread position:168-460
               
               
               Cow position:chr10:66592969-66593260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:168-466
               
               
               Cow position:chr10:59151720-59152029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):54, 185

               
               
               Conread position:169-452
               
               
               Cow position:chr10:22633490-22633775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:169-463
               
               
               Cow position:chr10:32834946-32834658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):140, 18

               
               
               Conread position:170-466
               
               
               Cow position:chr10:54848910-54848613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:170-475
               
               
               Cow position:chr10:49146643-49146346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:175-443
               
               
               Cow position:chr10:41132390-41132131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:183-465
               
               
               Cow position:chr10:12315276-12314994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:183-470
               
               
               Cow position:chr10:52695609-52695896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 164

               
               
               Conread position:183-471
               
               
               Cow position:chr10:21462363-21462069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:184-470
               
               
               Cow position:chr10:60722047-60722316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:187-371
               
               
               Cow position:chr10:40646789-40646612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:187-466
               
               
               Cow position:chr10:38518509-38518795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:187-466
               
               
               Cow position:chr10:50044521-50044813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 166

               
               
               Conread position:188-477
               
               
               Cow position:chr10:15319000-15318704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):28, 158

               
               
               Conread position:189-330
               
               
               Cow position:chr10:36498331-36498181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:190-475
               
               
               Cow position:chr10:6490644-6490944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:191-471
               
               
               Cow position:chr10:33732756-33733036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:192-466
               
               
               Cow position:chr10:16645071-16645354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:193-475
               
               
               Cow position:chr10:56733145-56732864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 152

               
               
               Conread position:196-477
               
               
               Cow position:chr10:41254468-41254746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:197-465
               
               
               Cow position:chr10:49168931-49169216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 276

               
               
               Conread position:199-465
               
               
               Cow position:chr10:11032389-11032660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:200-471
               
               
               Cow position:chr10:24732403-24732145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):224, 95

               
               
               Conread position:206-470
               
               
               Cow position:chr10:8077068-8077315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:206-475
               
               
               Cow position:chr10:57461449-57461180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:208-471
               
               
               Cow position:chr10:22049346-22049087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:208-471
               
               
               Cow position:chr10:22396344-22396083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:208-475
               
               
               Cow position:chr10:38725745-38725482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):184, 21

               
               
               Conread position:210-471
               
               
               Cow position:chr10:66194215-66194473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 128

               
               
               Conread position:212-466
               
               
               Cow position:chr10:43487800-43487547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:212-475
               
               
               Cow position:chr10:47690475-47690216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:213-384
               
               
               Cow position:chr10:24902898-24903071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:213-402
               
               
               Cow position:chr10:15425136-15424954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:213-416
               
               
               Cow position:chr10:63628275-63628065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-416
               
               
               Cow position:chr10:67581371-67581169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-419
               
               
               Cow position:chr10:34660156-34660358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-433
               
               
               Cow position:chr10:12651917-12651706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-433
               
               
               Cow position:chr10:46327777-46327557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-434
               
               
               Cow position:chr10:45295056-45295272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-435
               
               
               Cow position:chr10:9578872-9579099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 152

               
               
               Conread position:213-440
               
               
               Cow position:chr10:13316025-13315803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 142

               
               
               Conread position:213-440
               
               
               Cow position:chr10:30455744-30455988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-442
               
               
               Cow position:chr10:6664120-6663886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-443
               
               
               Cow position:chr10:44771736-44771520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr10:50533782-50534011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:213-444
               
               
               Cow position:chr10:33195128-33194888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-445
               
               
               Cow position:chr10:30360605-30360376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:213-447
               
               
               Cow position:chr10:62219920-62219680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-449
               
               
               Cow position:chr10:31779182-31779419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-449
               
               
               Cow position:chr10:49456007-49456234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):211, 18

               
               
               Conread position:213-451
               
               
               Cow position:chr10:47543162-47542937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):211, 93

               
               
               Conread position:213-452
               
               
               Cow position:chr10:6384617-6384385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-453
               
               
               Cow position:chr10:56080087-56080322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-456
               
               
               Cow position:chr10:6642976-6642731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-456
               
               
               Cow position:chr10:11009496-11009262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-461
               
               
               Cow position:chr10:6543812-6543564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-463
               
               
               Cow position:chr10:16986418-16986169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:213-464
               
               
               Cow position:chr10:39387539-39387298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):94, 8

               
               
               Conread position:213-464
               
               
               Cow position:chr10:60961021-60960778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr10:10148735-10148492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:213-465
               
               
               Cow position:chr10:52113587-52113832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):96, 66

               
               
               Conread position:213-465
               
               
               Cow position:chr10:53365114-53364863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr10:56475555-56475303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 100

               
               
               Conread position:213-466
               
               
               Cow position:chr10:13586790-13586550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-466
               
               
               Cow position:chr10:15115701-15115452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr10:24375630-24375389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):108, 61

               
               
               Conread position:213-466
               
               
               Cow position:chr10:35778815-35779065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:213-466
               
               
               Cow position:chr10:37014720-37014472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr10:37818471-37818720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr10:45658231-45657981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-466
               
               
               Cow position:chr10:48316861-48317120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr10:50015911-50016169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 193

               
               
               Conread position:213-466
               
               
               Cow position:chr10:52046957-52046697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr10:53336317-53336570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr10:65345387-65345632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-470
               
               
               Cow position:chr10:17073278-17073526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr10:2613454-2613198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:213-471
               
               
               Cow position:chr10:4164356-4164099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr10:4184282-4184023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr10:5543164-5543414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:213-471
               
               
               Cow position:chr10:6436146-6435890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr10:10720587-10720841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr10:15817708-15817961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr10:17844853-17844595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr10:18042266-18042016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr10:19372250-19372506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr10:19895479-19895230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr10:21082467-21082216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr10:21657506-21657255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr10:22341663-22341400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr10:22472411-22472150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 189

               
               
               Conread position:213-471
               
               
               Cow position:chr10:24276639-24276901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr10:24745206-24744962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr10:24871251-24870996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr10:25699736-25699484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr10:29279532-29279273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr10:30522977-30523235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):94, 8

               
               
               Conread position:213-471
               
               
               Cow position:chr10:35731441-35731691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:213-471
               
               
               Cow position:chr10:36002284-36002030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:213-471
               
               
               Cow position:chr10:37529179-37529434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr10:42637319-42637051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr10:45371142-45370886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr10:50134718-50134975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr10:51942875-51942622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:213-471
               
               
               Cow position:chr10:52296581-52296332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:213-471
               
               
               Cow position:chr10:55122893-55122625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr10:57059195-57059450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-471
               
               
               Cow position:chr10:59663886-59664144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr10:64285708-64285961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-472
               
               
               Cow position:chr10:15868338-15868067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-472
               
               
               Cow position:chr10:34430139-34430389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-473
               
               
               Cow position:chr10:4109674-4109417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:213-474
               
               
               Cow position:chr10:28670731-28670997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 149

               
               
               Conread position:213-474
               
               
               Cow position:chr10:37295586-37295839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr10:25911-25655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr10:6986553-6986271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 263

               
               
               Conread position:213-475
               
               
               Cow position:chr10:23506405-23506659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 54

               
               
               Conread position:213-475
               
               
               Cow position:chr10:23886374-23886627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-475
               
               
               Cow position:chr10:31362127-31362385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 97

               
               
               Conread position:213-475
               
               
               Cow position:chr10:42312990-42312734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:213-475
               
               
               Cow position:chr10:61982473-61982210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 132

               
               
               Conread position:213-475
               
               
               Cow position:chr10:68927235-68926978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr10:69559010-69558748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr10:1976231-1976496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-477
               
               
               Cow position:chr10:29919752-29920011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-477
               
               
               Cow position:chr10:43509086-43508816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-477
               
               
               Cow position:chr10:45378918-45379180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:214-465
               
               
               Cow position:chr10:24132738-24132980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:214-471
               
               
               Cow position:chr10:10751905-10752146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 93

               
               
               Conread position:214-471
               
               
               Cow position:chr10:15871787-15872040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:214-471
               
               
               Cow position:chr10:17176118-17175866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:214-475
               
               
               Cow position:chr10:20553270-20553007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:214-475
               
               
               Cow position:chr10:39109931-39110176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:215-474
               
               
               Cow position:chr10:2538174-2537923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:216-471
               
               
               Cow position:chr10:15293348-15293106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:216-471
               
               
               Cow position:chr10:40420764-40421010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:217-471
               
               
               Cow position:chr10:11463584-11463835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):72, 77

               
               
               Conread position:218-465
               
               
               Cow position:chr10:51944443-51944196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:218-471
               
               
               Cow position:chr10:11081044-11080793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr10:47412025-47412273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:218-477
               
               
               Cow position:chr10:46492914-46493179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:219-409
               
               
               Cow position:chr10:33084361-33084543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:219-412
               
               
               Cow position:chr10:42230872-42230680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr10:22390676-22390420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr10:31027563-31027814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr10:31400819-31401063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):202, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr10:63276472-63276221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:219-475
               
               
               Cow position:chr10:13311812-13311558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-477
               
               
               Cow position:chr10:23055998-23056254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:221-409
               
               
               Cow position:chr10:55395899-55396084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-431
               
               
               Cow position:chr10:31004933-31005148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:221-434
               
               
               Cow position:chr10:8449582-8449366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:221-436
               
               
               Cow position:chr10:7383536-7383744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-441
               
               
               Cow position:chr10:533609-533390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr10:35653748-35653529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):6, 22

               
               
               Conread position:221-454
               
               
               Cow position:chr10:47651376-47651156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-454
               
               
               Cow position:chr10:59588093-59588320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:221-465
               
               
               Cow position:chr10:10469056-10468818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:221-465
               
               
               Cow position:chr10:29166350-29166120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr10:50360000-50359759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:221-465
               
               
               Cow position:chr10:59164019-59164257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:221-465
               
               
               Cow position:chr10:62286634-62286390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):87, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr10:28395224-28395463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr10:34655031-34655276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:8093240-8093482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:8923357-8923109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:19549410-19549657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:20095842-20095589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:23936554-23936316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:34174900-34175162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:37415867-37415620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:38014443-38014197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:39228225-39227977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:48462266-48462507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:50182964-50183217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:221-471
               
               
               Cow position:chr10:53247927-53248180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:221-471
               
               
               Cow position:chr10:56828240-56828486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr10:59675177-59675419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr10:61839671-61839428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:221-471
               
               
               Cow position:chr10:68829207-68829449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:221-475
               
               
               Cow position:chr10:1488909-1488666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr10:20132451-20132706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr10:53674903-53674650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr10:36490097-36489841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-477
               
               
               Cow position:chr10:58690995-58690718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 191

               
               
               Conread position:222-467
               
               
               Cow position:chr10:21424604-21424847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:222-471
               
               
               Cow position:chr10:54504682-54504437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):87, 146

               
               
               Conread position:222-475
               
               
               Cow position:chr10:2304304-2304556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:222-477
               
               
               Cow position:chr10:6530263-6530022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):202, 82

               
               
               Conread position:223-465
               
               
               Cow position:chr10:24307847-24308077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:228-413
               
               
               Cow position:chr10:22888743-22888926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:228-438
               
               
               Cow position:chr10:15309331-15309533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:228-466
               
               
               Cow position:chr10:39586786-39587023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr10:28105008-28105251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:228-471
               
               
               Cow position:chr10:59571973-59571733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:228-475
               
               
               Cow position:chr10:28776422-28776177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 104

               
               
               Conread position:229-461
               
               
               Cow position:chr10:26209177-26209417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:229-471
               
               
               Cow position:chr10:2449421-2449184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:229-471
               
               
               Cow position:chr10:24560917-24561153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:230-449
               
               
               Cow position:chr10:49038655-49038432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 107

               
               
               Conread position:230-453
               
               
               Cow position:chr10:13617581-13617799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:230-475
               
               
               Cow position:chr10:5889693-5889944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:230-475
               
               
               Cow position:chr10:17837021-17836775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:231-471
               
               
               Cow position:chr10:45965568-45965332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:232-466
               
               
               Cow position:chr10:38241146-38240920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:237-453
               
               
               Cow position:chr10:42123530-42123746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:237-471
               
               
               Cow position:chr10:22616578-22616807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:237-471
               
               
               Cow position:chr10:61588198-61588431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:238-391
               
               
               Cow position:chr10:49472454-49472607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:238-431
               
               
               Cow position:chr10:52069423-52069614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:238-432
               
               
               Cow position:chr10:52881557-52881750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-444
               
               
               Cow position:chr10:69997739-69997945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:238-465
               
               
               Cow position:chr10:7817169-7816945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:238-466
               
               
               Cow position:chr10:38370393-38370622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:238-471
               
               
               Cow position:chr10:6489933-6489701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr10:16598750-16598518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):71, 131

               
               
               Conread position:238-471
               
               
               Cow position:chr10:22433848-22434088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-471
               
               
               Cow position:chr10:24781250-24781019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:238-471
               
               
               Cow position:chr10:29588778-29589009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-471
               
               
               Cow position:chr10:31374025-31374263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:238-471
               
               
               Cow position:chr10:31791198-31791427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-471
               
               
               Cow position:chr10:35862166-35862395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:238-471
               
               
               Cow position:chr10:42892909-42893133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:238-475
               
               
               Cow position:chr10:32417415-32417181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:238-477
               
               
               Cow position:chr10:36896466-36896225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:239-420
               
               
               Cow position:chr10:29328333-29328504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:240-453
               
               
               Cow position:chr10:64042144-64041933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:240-472
               
               
               Cow position:chr10:41802840-41803063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:240-473
               
               
               Cow position:chr10:40107160-40106931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:240-475
               
               
               Cow position:chr10:63940830-63940601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:241-471
               
               
               Cow position:chr10:24548308-24548089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):183, 62

               
               
               Conread position:243-453
               
               
               Cow position:chr10:21923464-21923672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:243-465
               
               
               Cow position:chr10:24756468-24756254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 66

               
               
               Conread position:243-475
               
               
               Cow position:chr10:51696797-51696570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:243-477
               
               
               Cow position:chr10:50109847-50110086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:244-475
               
               
               Cow position:chr10:47773783-47773552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:246-451
               
               
               Cow position:chr10:25882465-25882273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:246-471
               
               
               Cow position:chr10:65071365-65071142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:247-420
               
               
               Cow position:chr10:36107365-36107535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-458
               
               
               Cow position:chr10:8219338-8219130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:247-471
               
               
               Cow position:chr10:51314059-51313832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:247-475
               
               
               Cow position:chr10:42745970-42745738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:247-475
               
               
               Cow position:chr10:54469341-54469571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:248-454
               
               
               Cow position:chr10:64876571-64876363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-460
               
               
               Cow position:chr10:11576820-11576611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:248-477
               
               
               Cow position:chr10:34607613-34607384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:249-477
               
               
               Cow position:chr10:39303796-39304026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:250-438
               
               
               Cow position:chr10:12919307-12919492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:250-440
               
               
               Cow position:chr10:29188306-29188492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-460
               
               
               Cow position:chr10:747519-747307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:250-466
               
               
               Cow position:chr10:38942481-38942264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):175, 59

               
               
               Conread position:250-466
               
               
               Cow position:chr10:47724996-47724784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-467
               
               
               Cow position:chr10:65423854-65424063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr10:15462541-15462321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:250-471
               
               
               Cow position:chr10:52569641-52569423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-477
               
               
               Cow position:chr10:48513032-48513259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:251-465
               
               
               Cow position:chr10:35767041-35767245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):169, 43

               
               
               Conread position:252-471
               
               
               Cow position:chr10:28176341-28176558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:252-471
               
               
               Cow position:chr10:45770095-45769874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:254-475
               
               
               Cow position:chr10:12392561-12392777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:255-471
               
               
               Cow position:chr10:30352894-30352679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:255-475
               
               
               Cow position:chr10:29070201-29069984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:256-441
               
               
               Cow position:chr10:41626638-41626456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:256-471
               
               
               Cow position:chr10:32775143-32774940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:256-471
               
               
               Cow position:chr10:37235509-37235718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:257-466
               
               
               Cow position:chr10:31466789-31466584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:258-466
               
               
               Cow position:chr10:37173405-37173613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:259-460
               
               
               Cow position:chr10:27716800-27716999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:262-471
               
               
               Cow position:chr10:9444979-9445182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:264-449
               
               
               Cow position:chr10:32029797-32029980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-454
               
               
               Cow position:chr10:24096337-24096528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:264-466
               
               
               Cow position:chr10:14098297-14098483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:264-466
               
               
               Cow position:chr10:15294400-15294201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:264-466
               
               
               Cow position:chr10:24312851-24313052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:265-460
               
               
               Cow position:chr10:33891049-33891247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:271-443
               
               
               Cow position:chr10:331409-331236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:271-465
               
               
               Cow position:chr10:21037331-21037150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:271-471
               
               
               Cow position:chr10:35857033-35857223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:273-472
               
               
               Cow position:chr10:31000556-31000767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:280-471
               
               
               Cow position:chr10:20372105-20372296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:281-471
               
               
               Cow position:chr10:6173376-6173191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:281-471
               
               
               Cow position:chr10:35856338-35856518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:289-475
               
               
               Cow position:chr10:20399212-20399025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:295-471
               
               
               Cow position:chr10:25045690-25045855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:297-466
               
               
               Cow position:chr10:5607645-5607478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:297-466
               
               
               Cow position:chr10:57457336-57457172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:297-471
               
               
               Cow position:chr10:36285504-36285331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:297-471
               
               
               Cow position:chr10:60032567-60032743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:297-475
               
               
               Cow position:chr10:37444217-37444394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:306-465
               
               
               Cow position:chr10:20505536-20505376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:308-471
               
               
               Cow position:chr10:8170240-8170084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:308-473
               
               
               Cow position:chr10:3985419-3985257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:309-477
               
               
               Cow position:chr10:31266343-31266510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:310-471
               
               
               Cow position:chr10:37528618-37528774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:313-465
               
               
               Cow position:chr10:17983167-17983020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:313-466
               
               
               Cow position:chr10:48388285-48388431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:313-471
               
               
               Cow position:chr10:20735687-20735536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:315-471
               
               
               Cow position:chr10:9798212-9798366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:319-466
               
               
               Cow position:chr10:8321693-8321837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:319-471
               
               
               Cow position:chr10:14975817-14975963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:319-473
               
               
               Cow position:chr10:60936926-60936774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:323-467
               
               
               Cow position:chr10:888901-888760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:337-467
               
               
               Cow position:chr10:1201899-1201770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:337-471
               
               
               Cow position:chr10:42115221-42115084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:338-466
               
               
               Cow position:chr10:19402900-19402771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:339-471
               
               
               Cow position:chr10:24871851-24871720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:347-473
               
               
               Cow position:chr10:24971655-24971784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:348-471
               
               
               Cow position:chr10:19104216-19104341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:354-465
               
               
               Cow position:chr10:48500052-48499942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:354-471
               
               
               Cow position:chr10:50200663-50200542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:358-466
               
               
               Cow position:chr10:48377696-48377804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:139-418
               
               
               Cow position:chr11:696171-696456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:140-476
               
               
               Cow position:chr11:42359291-42358952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:145-466
               
               
               Cow position:chr11:41272309-41271984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 205

               
               
               Conread position:145-475
               
               
               Cow position:chr11:47125715-47125393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 140

               
               
               Conread position:146-454
               
               
               Cow position:chr11:49057573-49057256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 206

               
               
               Conread position:149-347
               
               
               Cow position:chr11:61130510-61130710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:153-436
               
               
               Cow position:chr11:249322-249614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:155-374
               
               
               Cow position:chr11:11785494-11785265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 63

               
               
               Conread position:155-461
               
               
               Cow position:chr11:9874474-9874167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 158

               
               
               Conread position:155-465
               
               
               Cow position:chr11:8828471-8828784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:155-465
               
               
               Cow position:chr11:27681662-27681344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 174

               
               
               Conread position:155-466
               
               
               Cow position:chr11:84890546-84890880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 201

               
               
               Conread position:155-471
               
               
               Cow position:chr11:42002803-42003112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:155-475
               
               
               Cow position:chr11:14308796-14308469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:155-475
               
               
               Cow position:chr11:62573847-62574171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:158-465
               
               
               Cow position:chr11:1668825-1668520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:158-471
               
               
               Cow position:chr11:43646252-43646570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 195

               
               
               Conread position:162-466
               
               
               Cow position:chr11:7001775-7002093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:162-469
               
               
               Cow position:chr11:51729448-51729128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:162-471
               
               
               Cow position:chr11:58588501-58588185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 189

               
               
               Conread position:162-471
               
               
               Cow position:chr11:78544084-78543772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:162-475
               
               
               Cow position:chr11:4059908-4060218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 130

               
               
               Conread position:163-319
               
               
               Cow position:chr11:62015852-62016019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:163-409
               
               
               Cow position:chr11:21399111-21398859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:163-415
               
               
               Cow position:chr11:18785723-18785979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 126

               
               
               Conread position:163-417
               
               
               Cow position:chr11:21136967-21136704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:163-418
               
               
               Cow position:chr11:54133934-54134181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 80

               
               
               Conread position:163-418
               
               
               Cow position:chr11:69392702-69392448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:163-423
               
               
               Cow position:chr11:27722546-27722274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-433
               
               
               Cow position:chr11:30211058-30210780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:163-436
               
               
               Cow position:chr11:31507001-31506717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:163-440
               
               
               Cow position:chr11:2419924-2419639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:163-442
               
               
               Cow position:chr11:9368979-9368694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:163-443
               
               
               Cow position:chr11:28395629-28395334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-447
               
               
               Cow position:chr11:11752363-11752658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:163-449
               
               
               Cow position:chr11:16541008-16540721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:163-455
               
               
               Cow position:chr11:33824741-33825038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 76

               
               
               Conread position:163-459
               
               
               Cow position:chr11:71805993-71806294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 147

               
               
               Conread position:163-461
               
               
               Cow position:chr11:56821089-56821406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 254

               
               
               Conread position:163-461
               
               
               Cow position:chr11:69402098-69402400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 104

               
               
               Conread position:163-466
               
               
               Cow position:chr11:4609696-4609991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:163-466
               
               
               Cow position:chr11:18484028-18484322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:163-466
               
               
               Cow position:chr11:48932416-48932742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 315

               
               
               Conread position:163-466
               
               
               Cow position:chr11:55821564-55821864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:163-467
               
               
               Cow position:chr11:55494837-55494521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:163-467
               
               
               Cow position:chr11:82107747-82108051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:163-470
               
               
               Cow position:chr11:24967592-24967295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:163-471
               
               
               Cow position:chr11:12111303-12111628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 181

               
               
               Conread position:163-471
               
               
               Cow position:chr11:18144670-18144974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:163-471
               
               
               Cow position:chr11:35882064-35881748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 151

               
               
               Conread position:163-471
               
               
               Cow position:chr11:49153113-49152789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):51, 143

               
               
               Conread position:163-471
               
               
               Cow position:chr11:75874599-75874914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:163-472
               
               
               Cow position:chr11:32378317-32378023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:163-475
               
               
               Cow position:chr11:38794685-38794379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:163-477
               
               
               Cow position:chr11:32072296-32071980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:163-477
               
               
               Cow position:chr11:42083626-42083309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:164-453
               
               
               Cow position:chr11:20491716-20491425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:164-454
               
               
               Cow position:chr11:21852144-21852449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:164-454
               
               
               Cow position:chr11:67246920-67246646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):260, 47

               
               
               Conread position:164-461
               
               
               Cow position:chr11:53130934-53130658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):260, 67

               
               
               Conread position:164-465
               
               
               Cow position:chr11:63156772-63157066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:164-466
               
               
               Cow position:chr11:18699042-18698720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 196

               
               
               Conread position:164-466
               
               
               Cow position:chr11:42519884-42519583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:164-466
               
               
               Cow position:chr11:61427740-61427449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:164-466
               
               
               Cow position:chr11:77546568-77546260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:164-470
               
               
               Cow position:chr11:32438800-32439113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:164-471
               
               
               Cow position:chr11:16232782-16233098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:165-399
               
               
               Cow position:chr11:19586612-19586364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 183

               
               
               Conread position:165-417
               
               
               Cow position:chr11:67871452-67871713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 184

               
               
               Conread position:165-466
               
               
               Cow position:chr11:22931826-22932132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:165-469
               
               
               Cow position:chr11:30934563-30934263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:165-471
               
               
               Cow position:chr11:47899421-47899117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:165-471
               
               
               Cow position:chr11:71009278-71008973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):49, 139

               
               
               Conread position:166-329
               
               
               Cow position:chr11:72869671-72869844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 126

               
               
               Conread position:166-464
               
               
               Cow position:chr11:45631610-45631917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 154

               
               
               Conread position:166-465
               
               
               Cow position:chr11:55762027-55761723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 190

               
               
               Conread position:166-475
               
               
               Cow position:chr11:77683322-77682995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):53, 180

               
               
               Conread position:167-473
               
               
               Cow position:chr11:18572952-18572637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 182

               
               
               Conread position:168-465
               
               
               Cow position:chr11:50951703-50951397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:168-477
               
               
               Cow position:chr11:59365926-59366248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:169-475
               
               
               Cow position:chr11:64638389-64638700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:170-410
               
               
               Cow position:chr11:39060464-39060702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:170-461
               
               
               Cow position:chr11:77705891-77705608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:170-475
               
               
               Cow position:chr11:74316847-74316542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:170-475
               
               
               Cow position:chr11:86925797-86926096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 125

               
               
               Conread position:171-470
               
               
               Cow position:chr11:63433926-63434217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:174-466
               
               
               Cow position:chr11:46413704-46413418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:175-471
               
               
               Cow position:chr11:67600914-67600620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:183-467
               
               
               Cow position:chr11:39499481-39499200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:187-466
               
               
               Cow position:chr11:64905127-64904839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:187-466
               
               
               Cow position:chr11:65409022-65409312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:191-438
               
               
               Cow position:chr11:21497637-21497391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 130

               
               
               Conread position:192-461
               
               
               Cow position:chr11:48306223-48306496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):52, 152

               
               
               Conread position:192-477
               
               
               Cow position:chr11:30708628-30708328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 153

               
               
               Conread position:197-477
               
               
               Cow position:chr11:5031667-5031944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 112

               
               
               Conread position:198-441
               
               
               Cow position:chr11:30787332-30787083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:200-469
               
               
               Cow position:chr11:66188212-66188481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:200-471
               
               
               Cow position:chr11:8840639-8840900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:200-471
               
               
               Cow position:chr11:43898243-43897978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:206-471
               
               
               Cow position:chr11:30879767-30879520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 116

               
               
               Conread position:207-397
               
               
               Cow position:chr11:32398734-32398548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:210-435
               
               
               Cow position:chr11:40608499-40608724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:210-471
               
               
               Cow position:chr11:36182790-36182525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:210-475
               
               
               Cow position:chr11:40258315-40258580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:211-448
               
               
               Cow position:chr11:5211648-5211879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:212-411
               
               
               Cow position:chr11:80412920-80413114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:212-442
               
               
               Cow position:chr11:39118851-39118618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:212-475
               
               
               Cow position:chr11:52983768-52983512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:213-399
               
               
               Cow position:chr11:35536679-35536497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:213-415
               
               
               Cow position:chr11:14466394-14466595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-417
               
               
               Cow position:chr11:63998999-63999198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:213-419
               
               
               Cow position:chr11:18587503-18587718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:213-419
               
               
               Cow position:chr11:47837412-47837205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-419
               
               
               Cow position:chr11:63919961-63920159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-420
               
               
               Cow position:chr11:29659652-29659451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-427
               
               
               Cow position:chr11:375552-375335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:213-433
               
               
               Cow position:chr11:13940278-13940066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-436
               
               
               Cow position:chr11:83033147-83033366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:213-439
               
               
               Cow position:chr11:64867928-64868146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-441
               
               
               Cow position:chr11:50472409-50472182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:213-441
               
               
               Cow position:chr11:70756570-70756348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:213-443
               
               
               Cow position:chr11:63202156-63202382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:213-446
               
               
               Cow position:chr11:52690429-52690661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:213-446
               
               
               Cow position:chr11:70206411-70206184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:213-452
               
               
               Cow position:chr11:28644180-28643940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:213-452
               
               
               Cow position:chr11:83926135-83925902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr11:17831129-17831365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 95

               
               
               Conread position:213-454
               
               
               Cow position:chr11:23407557-23407315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-454
               
               
               Cow position:chr11:34646682-34646445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-454
               
               
               Cow position:chr11:48650065-48649835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-454
               
               
               Cow position:chr11:63435613-63435371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:213-458
               
               
               Cow position:chr11:4652880-4653126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-460
               
               
               Cow position:chr11:40573243-40573485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:213-460
               
               
               Cow position:chr11:41985953-41986196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-461
               
               
               Cow position:chr11:9221639-9221876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:213-461
               
               
               Cow position:chr11:11125755-11125510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-464
               
               
               Cow position:chr11:6633803-6633556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-464
               
               
               Cow position:chr11:70600736-70600976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-464
               
               
               Cow position:chr11:77758668-77758913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-464
               
               
               Cow position:chr11:84228625-84228869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:213-465
               
               
               Cow position:chr11:1362375-1362634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:213-465
               
               
               Cow position:chr11:13592828-13592580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr11:25387161-25386907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):82, 135

               
               
               Conread position:213-465
               
               
               Cow position:chr11:33311070-33310813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:213-465
               
               
               Cow position:chr11:48296123-48295876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:213-465
               
               
               Cow position:chr11:73353967-73354211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr11:1070998-1071249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr11:6202536-6202289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:213-466
               
               
               Cow position:chr11:26535879-26535621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:213-466
               
               
               Cow position:chr11:30476091-30475845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:213-466
               
               
               Cow position:chr11:36238870-36238626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):211, 80

               
               
               Conread position:213-466
               
               
               Cow position:chr11:36658731-36658975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr11:52380779-52381031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):94, 108

               
               
               Conread position:213-466
               
               
               Cow position:chr11:56518219-56518467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr11:63909574-63909815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:213-466
               
               
               Cow position:chr11:70609890-70609628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 58

               
               
               Conread position:213-466
               
               
               Cow position:chr11:71341372-71341609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr11:71501040-71501293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr11:71868510-71868766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr11:78380972-78381213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr11:41272-41021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:213-471
               
               
               Cow position:chr11:377549-377808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr11:2084236-2083974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr11:8544925-8545175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr11:8988139-8988390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:213-471
               
               
               Cow position:chr11:13500108-13499850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr11:23137961-23138224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr11:26144003-26144261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr11:29946821-29947090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):91, 247

               
               
               Conread position:213-471
               
               
               Cow position:chr11:30192271-30192010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:213-471
               
               
               Cow position:chr11:30209730-30209983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr11:34113358-34113103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr11:34144832-34145076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):156, 62

               
               
               Conread position:213-471
               
               
               Cow position:chr11:36799215-36799465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr11:40478760-40479017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:213-471
               
               
               Cow position:chr11:40818532-40818802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 255

               
               
               Conread position:213-471
               
               
               Cow position:chr11:44234448-44234191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 134

               
               
               Conread position:213-471
               
               
               Cow position:chr11:48272293-48272035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr11:48474796-48474540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr11:62620469-62620221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr11:65607596-65607853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr11:70086425-70086162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:213-471
               
               
               Cow position:chr11:70483759-70484021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr11:73512351-73512594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr11:76606765-76606521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr11:77128753-77128497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr11:77750680-77750934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr11:81406075-81406321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:213-475
               
               
               Cow position:chr11:13043053-13043315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr11:19247107-19247367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr11:33414329-33414065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr11:35684408-35684666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 110

               
               
               Conread position:213-475
               
               
               Cow position:chr11:49149142-49148870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 137

               
               
               Conread position:213-475
               
               
               Cow position:chr11:54334421-54334163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 90

               
               
               Conread position:213-475
               
               
               Cow position:chr11:59873021-59872762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:213-477
               
               
               Cow position:chr11:6233787-6234049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-477
               
               
               Cow position:chr11:9270634-9270897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr11:20602319-20602059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:213-477
               
               
               Cow position:chr11:30955093-30954829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:213-477
               
               
               Cow position:chr11:61454424-61454701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:213-477
               
               
               Cow position:chr11:61958652-61958916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-477
               
               
               Cow position:chr11:63065746-63065487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:214-434
               
               
               Cow position:chr11:33345537-33345317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:214-466
               
               
               Cow position:chr11:71492770-71493015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):107, 94

               
               
               Conread position:214-466
               
               
               Cow position:chr11:82940534-82940779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):210, 7

               
               
               Conread position:214-471
               
               
               Cow position:chr11:16906959-16907205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:214-475
               
               
               Cow position:chr11:4662956-4663212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:214-475
               
               
               Cow position:chr11:8147807-8148068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:215-409
               
               
               Cow position:chr11:22499276-22499464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:215-466
               
               
               Cow position:chr11:80530449-80530208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:215-471
               
               
               Cow position:chr11:22977784-22978027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:215-471
               
               
               Cow position:chr11:42043906-42044150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:216-454
               
               
               Cow position:chr11:49934641-49934884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:218-398
               
               
               Cow position:chr11:7013659-7013833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:218-447
               
               
               Cow position:chr11:42066951-42066721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr11:21438296-21438053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:218-471
               
               
               Cow position:chr11:41175859-41176112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:218-471
               
               
               Cow position:chr11:66424792-66425050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:218-471
               
               
               Cow position:chr11:83066574-83066332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):207, 10

               
               
               Conread position:218-477
               
               
               Cow position:chr11:28993650-28993902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:218-477
               
               
               Cow position:chr11:53778714-53778446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:219-392
               
               
               Cow position:chr11:41313571-41313740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-433
               
               
               Cow position:chr11:41293732-41293944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-443
               
               
               Cow position:chr11:46953033-46952815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-465
               
               
               Cow position:chr11:67804839-67804595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:219-466
               
               
               Cow position:chr11:50073023-50072793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-475
               
               
               Cow position:chr11:36286781-36286530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:219-475
               
               
               Cow position:chr11:83230315-83230557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:220-466
               
               
               Cow position:chr11:44642207-44642444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:220-475
               
               
               Cow position:chr11:63847932-63847681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:221-459
               
               
               Cow position:chr11:76114737-76114503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:221-465
               
               
               Cow position:chr11:42296536-42296774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr11:44222969-44222734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr11:2092422-2092182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:221-466
               
               
               Cow position:chr11:33341061-33341303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr11:45646509-45646752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:221-466
               
               
               Cow position:chr11:52297137-52297378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr11:71390471-71390721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:221-469
               
               
               Cow position:chr11:43360700-43360948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-469
               
               
               Cow position:chr11:69075994-69075748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr11:11232372-11232617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr11:26483800-26483551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:221-471
               
               
               Cow position:chr11:34963153-34962898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr11:45897965-45898215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:221-471
               
               
               Cow position:chr11:55333993-55333749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr11:58990587-58990347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:221-471
               
               
               Cow position:chr11:62155722-62155462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr11:80923240-80923486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr11:83043279-83043526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr11:87155603-87155355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr11:23128456-23128708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr11:23232425-23232682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:221-475
               
               
               Cow position:chr11:27913368-27913102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr11:38236335-38236075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr11:38639195-38638952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr11:39115578-39115325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 61

               
               
               Conread position:221-475
               
               
               Cow position:chr11:68904992-68905240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:221-477
               
               
               Cow position:chr11:17227561-17227815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr11:44636670-44636927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:222-419
               
               
               Cow position:chr11:8428595-8428400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:222-447
               
               
               Cow position:chr11:67615163-67615382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:222-459
               
               
               Cow position:chr11:41133986-41134216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:222-471
               
               
               Cow position:chr11:50152730-50152978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:224-443
               
               
               Cow position:chr11:70745443-70745662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:225-411
               
               
               Cow position:chr11:12368784-12368594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:226-471
               
               
               Cow position:chr11:38670761-38670520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:226-477
               
               
               Cow position:chr11:62880552-62880800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:228-447
               
               
               Cow position:chr11:47772312-47772531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:228-465
               
               
               Cow position:chr11:27765231-27764999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr11:11558249-11558005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 142

               
               
               Conread position:228-471
               
               
               Cow position:chr11:27747001-27746762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:228-475
               
               
               Cow position:chr11:20238754-20238505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:228-475
               
               
               Cow position:chr11:34829708-34829951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:229-408
               
               
               Cow position:chr11:84795674-84795848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:229-471
               
               
               Cow position:chr11:47545208-47544968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 59

               
               
               Conread position:230-441
               
               
               Cow position:chr11:56734705-56734496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 67

               
               
               Conread position:230-454
               
               
               Cow position:chr11:51043856-51044077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:230-470
               
               
               Cow position:chr11:1485785-1486029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:230-475
               
               
               Cow position:chr11:48383596-48383358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:230-475
               
               
               Cow position:chr11:68913216-68912968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:231-470
               
               
               Cow position:chr11:47004423-47004187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:231-471
               
               
               Cow position:chr11:10095418-10095184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:236-466
               
               
               Cow position:chr11:49231943-49231719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:236-471
               
               
               Cow position:chr11:79728598-79728832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:236-475
               
               
               Cow position:chr11:83687364-83687599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:237-461
               
               
               Cow position:chr11:32254148-32254371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:237-471
               
               
               Cow position:chr11:34032134-34032365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:238-399
               
               
               Cow position:chr11:19946503-19946345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-416
               
               
               Cow position:chr11:75965584-75965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:238-419
               
               
               Cow position:chr11:31875160-31874982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-444
               
               
               Cow position:chr11:70978666-70978863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:238-446
               
               
               Cow position:chr11:48660002-48659793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:238-449
               
               
               Cow position:chr11:83397973-83397764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:238-454
               
               
               Cow position:chr11:66572430-66572648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 66

               
               
               Conread position:238-454
               
               
               Cow position:chr11:70278045-70278255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-459
               
               
               Cow position:chr11:65444775-65444998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:238-465
               
               
               Cow position:chr11:33348119-33348342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-466
               
               
               Cow position:chr11:30830546-30830773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:238-466
               
               
               Cow position:chr11:35775405-35775181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 71

               
               
               Conread position:238-466
               
               
               Cow position:chr11:37804486-37804712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr11:60143234-60143456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:238-466
               
               
               Cow position:chr11:72375612-72375843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:238-471
               
               
               Cow position:chr11:23586706-23586475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr11:30925225-30924987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):6, 183

               
               
               Conread position:238-471
               
               
               Cow position:chr11:32436401-32436169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:238-471
               
               
               Cow position:chr11:43430389-43430613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr11:51144781-51144555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 68

               
               
               Conread position:238-471
               
               
               Cow position:chr11:63482362-63482589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 71

               
               
               Conread position:238-471
               
               
               Cow position:chr11:70273374-70273138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-472
               
               
               Cow position:chr11:56654623-56654384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-473
               
               
               Cow position:chr11:17493551-17493314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:238-475
               
               
               Cow position:chr11:46746701-46746462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:239-466
               
               
               Cow position:chr11:75479957-75480186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:239-471
               
               
               Cow position:chr11:7590255-7590031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:239-471
               
               
               Cow position:chr11:30120595-30120828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 58

               
               
               Conread position:239-471
               
               
               Cow position:chr11:67747351-67747122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:239-475
               
               
               Cow position:chr11:77745185-77745427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:240-443
               
               
               Cow position:chr11:80761312-80761514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:240-448
               
               
               Cow position:chr11:16261959-16262166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:241-466
               
               
               Cow position:chr11:30764555-30764325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:241-472
               
               
               Cow position:chr11:2788458-2788215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:243-453
               
               
               Cow position:chr11:2917523-2917731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:243-465
               
               
               Cow position:chr11:65762528-65762756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 128

               
               
               Conread position:243-466
               
               
               Cow position:chr11:2575841-2576061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:243-466
               
               
               Cow position:chr11:7874201-7873990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):201, 58

               
               
               Conread position:243-466
               
               
               Cow position:chr11:19591932-19592152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:244-426
               
               
               Cow position:chr11:46592527-46592348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:247-441
               
               
               Cow position:chr11:71807508-71807704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:247-449
               
               
               Cow position:chr11:48429169-48428964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:247-453
               
               
               Cow position:chr11:7460556-7460763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:247-454
               
               
               Cow position:chr11:28691696-28691902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:247-460
               
               
               Cow position:chr11:33753850-33754056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 68

               
               
               Conread position:247-464
               
               
               Cow position:chr11:38874343-38874559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-466
               
               
               Cow position:chr11:12949889-12950104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:247-471
               
               
               Cow position:chr11:84385580-84385800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 91

               
               
               Conread position:247-475
               
               
               Cow position:chr11:71168531-71168750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:248-460
               
               
               Cow position:chr11:4323416-4323204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-460
               
               
               Cow position:chr11:9463893-9463680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:248-466
               
               
               Cow position:chr11:80787849-80788070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-471
               
               
               Cow position:chr11:80756723-80756946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:248-473
               
               
               Cow position:chr11:36981621-36981395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:250-443
               
               
               Cow position:chr11:48672768-48672579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:250-443
               
               
               Cow position:chr11:76653075-76652887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:250-459
               
               
               Cow position:chr11:31337443-31337230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:250-460
               
               
               Cow position:chr11:3720309-3720103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:250-465
               
               
               Cow position:chr11:61858847-61859053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr11:18340985-18341198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:250-471
               
               
               Cow position:chr11:33293723-33293950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:252-466
               
               
               Cow position:chr11:53512136-53511924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:252-470
               
               
               Cow position:chr11:14470419-14470208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:253-466
               
               
               Cow position:chr11:63499273-63499481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:253-475
               
               
               Cow position:chr11:3833310-3833518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:254-458
               
               
               Cow position:chr11:53462994-53462793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:254-471
               
               
               Cow position:chr11:15772662-15772882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:257-471
               
               
               Cow position:chr11:45872262-45872482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 204

               
               
               Conread position:259-449
               
               
               Cow position:chr11:81282004-81281806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:259-459
               
               
               Cow position:chr11:56728996-56728799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:259-464
               
               
               Cow position:chr11:3726335-3726130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:259-471
               
               
               Cow position:chr11:17860109-17860317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:259-477
               
               
               Cow position:chr11:20684525-20684746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:263-471
               
               
               Cow position:chr11:2811687-2811891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:264-459
               
               
               Cow position:chr11:33349659-33349849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:264-465
               
               
               Cow position:chr11:30597035-30596830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:264-466
               
               
               Cow position:chr11:68909813-68910008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:266-434
               
               
               Cow position:chr11:81167987-81168158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:266-475
               
               
               Cow position:chr11:42232646-42232436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:267-465
               
               
               Cow position:chr11:57170791-57170986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:267-469
               
               
               Cow position:chr11:14094381-14094583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:267-471
               
               
               Cow position:chr11:48041994-48042202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:269-473
               
               
               Cow position:chr11:27386302-27386510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:269-477
               
               
               Cow position:chr11:8339369-8339575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:271-471
               
               
               Cow position:chr11:10076803-10076603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:273-466
               
               
               Cow position:chr11:43644071-43644258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:274-467
               
               
               Cow position:chr11:21427961-21428152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:276-477
               
               
               Cow position:chr11:24585211-24585010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:279-471
               
               
               Cow position:chr11:81174911-81174727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:281-465
               
               
               Cow position:chr11:2309898-2309716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:281-471
               
               
               Cow position:chr11:42792948-42793135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:286-471
               
               
               Cow position:chr11:16251224-16251409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:286-477
               
               
               Cow position:chr11:83196517-83196329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:290-454
               
               
               Cow position:chr11:51626980-51626816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:290-466
               
               
               Cow position:chr11:62979506-62979323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:290-477
               
               
               Cow position:chr11:38194173-38193981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:295-471
               
               
               Cow position:chr11:71846339-71846508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:296-475
               
               
               Cow position:chr11:61298975-61299149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:297-466
               
               
               Cow position:chr11:7333711-7333880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:304-475
               
               
               Cow position:chr11:65843095-65843260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:306-466
               
               
               Cow position:chr11:47109970-47109812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:306-475
               
               
               Cow position:chr11:77241367-77241205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:309-465
               
               
               Cow position:chr11:8105781-8105625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:309-466
               
               
               Cow position:chr11:48901087-48901236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:309-471
               
               
               Cow position:chr11:21830352-21830515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:309-475
               
               
               Cow position:chr11:47165145-47165306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:310-471
               
               
               Cow position:chr11:47586357-47586511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr11:63516820-63516664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:313-475
               
               
               Cow position:chr11:62045386-62045230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:315-473
               
               
               Cow position:chr11:27661120-27660961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:319-466
               
               
               Cow position:chr11:9837114-9837259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:319-471
               
               
               Cow position:chr11:75748418-75748271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:320-466
               
               
               Cow position:chr11:21819458-21819603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:321-475
               
               
               Cow position:chr11:43914197-43914045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:338-466
               
               
               Cow position:chr11:36361917-36362042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:339-471
               
               
               Cow position:chr11:71455760-71455628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:344-471
               
               
               Cow position:chr11:29266506-29266378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:346-471
               
               
               Cow position:chr11:57111345-57111472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 12

               
               
               Conread position:352-464
               
               
               Cow position:chr11:62808690-62808805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:353-471
               
               
               Cow position:chr11:41577058-41577176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:358-466
               
               
               Cow position:chr11:77207997-77207890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:358-475
               
               
               Cow position:chr11:29786654-29786772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:360-475
               
               
               Cow position:chr11:73478568-73478448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:364-471
               
               
               Cow position:chr11:32609947-32609840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:368-471
               
               
               Cow position:chr11:84890809-84890912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:140-475
               
               
               Cow position:chr12:1031137-1030792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:145-471
               
               
               Cow position:chr12:24559510-24559174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:155-416
               
               
               Cow position:chr12:37137393-37137651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:157-471
               
               
               Cow position:chr12:12331371-12331686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 187

               
               
               Conread position:162-475
               
               
               Cow position:chr12:41642565-41642243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:163-375
               
               
               Cow position:chr12:6688036-6687804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:163-397
               
               
               Cow position:chr12:30413807-30414057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:163-416
               
               
               Cow position:chr12:1333368-1333100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-460
               
               
               Cow position:chr12:16543446-16543744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:163-461
               
               
               Cow position:chr12:47804286-47803982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:163-465
               
               
               Cow position:chr12:5714769-5714451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:163-466
               
               
               Cow position:chr12:33458272-33457967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:163-471
               
               
               Cow position:chr12:9229365-9229665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:163-473
               
               
               Cow position:chr12:37728280-37727956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:163-473
               
               
               Cow position:chr12:37732645-37732968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 187

               
               
               Conread position:163-475
               
               
               Cow position:chr12:19714910-19715227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:163-475
               
               
               Cow position:chr12:30170803-30170479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:163-477
               
               
               Cow position:chr12:30210621-30210288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:164-323
               
               
               Cow position:chr12:23734510-23734346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 69

               
               
               Conread position:164-465
               
               
               Cow position:chr12:25340643-25340336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:164-465
               
               
               Cow position:chr12:32413648-32413334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:164-475
               
               
               Cow position:chr12:34465868-34466200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):62, 182

               
               
               Conread position:165-375
               
               
               Cow position:chr12:3616132-3615913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:165-468
               
               
               Cow position:chr12:15230690-15230996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:166-461
               
               
               Cow position:chr12:27366055-27365753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:167-390
               
               
               Cow position:chr12:5680812-5680578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):52, 178

               
               
               Conread position:167-448
               
               
               Cow position:chr12:31517036-31517328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 201

               
               
               Conread position:167-472
               
               
               Cow position:chr12:4122439-4122725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:168-471
               
               
               Cow position:chr12:31429446-31429753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:170-471
               
               
               Cow position:chr12:33851475-33851176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:172-466
               
               
               Cow position:chr12:1223221-1223523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:175-465
               
               
               Cow position:chr12:23916953-23916665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:175-477
               
               
               Cow position:chr12:25280388-25280683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:181-454
               
               
               Cow position:chr12:11836337-11836066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:183-457
               
               
               Cow position:chr12:26217722-26218000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:187-471
               
               
               Cow position:chr12:27802952-27803229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:197-461
               
               
               Cow position:chr12:12304469-12304218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:197-475
               
               
               Cow position:chr12:31198866-31198574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:198-471
               
               
               Cow position:chr12:2711585-2711309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:200-412
               
               
               Cow position:chr12:35652776-35652984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:200-443
               
               
               Cow position:chr12:42174501-42174264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:200-467
               
               
               Cow position:chr12:20776840-20777101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:213-403
               
               
               Cow position:chr12:16147561-16147370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:213-405
               
               
               Cow position:chr12:18572695-18572512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:213-406
               
               
               Cow position:chr12:26749880-26750077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-409
               
               
               Cow position:chr12:38126452-38126648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:213-412
               
               
               Cow position:chr12:14223053-14222852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-415
               
               
               Cow position:chr12:44733020-44733219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-419
               
               
               Cow position:chr12:29675070-29675268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:213-420
               
               
               Cow position:chr12:4341672-4341871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-422
               
               
               Cow position:chr12:10942359-10942151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-431
               
               
               Cow position:chr12:7110269-7110056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-437
               
               
               Cow position:chr12:26575967-26575735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:213-440
               
               
               Cow position:chr12:15173895-15173672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-442
               
               
               Cow position:chr12:19258349-19258125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:213-442
               
               
               Cow position:chr12:23446792-23446567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-442
               
               
               Cow position:chr12:27563305-27563532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-442
               
               
               Cow position:chr12:45680349-45680124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr12:3623766-3623538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:213-443
               
               
               Cow position:chr12:4866889-4866666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-443
               
               
               Cow position:chr12:35770949-35771175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:213-447
               
               
               Cow position:chr12:45090280-45090518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:213-449
               
               
               Cow position:chr12:28213581-28213356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-450
               
               
               Cow position:chr12:36790740-36790974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr12:27037378-27037612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-454
               
               
               Cow position:chr12:48415444-48415684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 90

               
               
               Conread position:213-457
               
               
               Cow position:chr12:15050553-15050788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-458
               
               
               Cow position:chr12:20479266-20479496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:213-459
               
               
               Cow position:chr12:32051580-32051339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-461
               
               
               Cow position:chr12:41474161-41473918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:213-464
               
               
               Cow position:chr12:25312300-25312548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:213-464
               
               
               Cow position:chr12:42163110-42162862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:213-465
               
               
               Cow position:chr12:4720019-4719768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr12:6410662-6410909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:213-465
               
               
               Cow position:chr12:18765901-18766155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 146

               
               
               Conread position:213-465
               
               
               Cow position:chr12:44595738-44595987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr12:5635381-5635625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr12:6241391-6241135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr12:11587846-11587589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr12:24211479-24211242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:213-466
               
               
               Cow position:chr12:30753791-30753541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-466
               
               
               Cow position:chr12:30805930-30805676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:213-466
               
               
               Cow position:chr12:33976271-33976023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr12:40269994-40270272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 268

               
               
               Conread position:213-466
               
               
               Cow position:chr12:42967066-42966822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr12:3950273-3950530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr12:7000533-7000788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:213-471
               
               
               Cow position:chr12:7978109-7977859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr12:29770507-29770756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr12:29969651-29969397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr12:33323423-33323678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:213-471
               
               
               Cow position:chr12:34161485-34161233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr12:35368714-35368458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr12:36544570-36544832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr12:39465651-39465399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:213-471
               
               
               Cow position:chr12:44517666-44517919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-474
               
               
               Cow position:chr12:25320986-25320736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):212, 82

               
               
               Conread position:213-475
               
               
               Cow position:chr12:5940413-5940155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 125

               
               
               Conread position:213-475
               
               
               Cow position:chr12:17031687-17031423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:213-475
               
               
               Cow position:chr12:30919497-30919233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr12:31532332-31532598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 77

               
               
               Conread position:213-475
               
               
               Cow position:chr12:34473553-34473813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:213-475
               
               
               Cow position:chr12:41159659-41159402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:213-477
               
               
               Cow position:chr12:29483814-29484079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:214-451
               
               
               Cow position:chr12:25188259-25188023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:214-467
               
               
               Cow position:chr12:22882126-22881872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:214-475
               
               
               Cow position:chr12:19866313-19866050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:215-447
               
               
               Cow position:chr12:23836399-23836164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-450
               
               
               Cow position:chr12:7960504-7960740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:215-477
               
               
               Cow position:chr12:42181059-42181327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):94, 247

               
               
               Conread position:217-433
               
               
               Cow position:chr12:34165650-34165441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:218-471
               
               
               Cow position:chr12:25452382-25452627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:218-477
               
               
               Cow position:chr12:19869529-19869275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:219-461
               
               
               Cow position:chr12:19507702-19507459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr12:30661885-30662132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:220-437
               
               
               Cow position:chr12:21911874-21911652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:220-466
               
               
               Cow position:chr12:23855907-23855657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:221-417
               
               
               Cow position:chr12:15700154-15699945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:221-419
               
               
               Cow position:chr12:30590830-30590636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:221-423
               
               
               Cow position:chr12:25193112-25192918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:221-434
               
               
               Cow position:chr12:16670329-16670118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:221-444
               
               
               Cow position:chr12:12300982-12300764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:221-445
               
               
               Cow position:chr12:22285059-22285277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:221-448
               
               
               Cow position:chr12:37169883-37170104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr12:28582447-28582671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr12:44920104-44919861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:221-464
               
               
               Cow position:chr12:25110378-25110612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr12:11056939-11056703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr12:7299396-7299646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 101

               
               
               Conread position:221-466
               
               
               Cow position:chr12:18518736-18518488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr12:30194764-30194528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr12:8868819-8869060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr12:17881924-17881679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr12:18963865-18964110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr12:25561432-25561189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr12:29995401-29995643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr12:5906119-5905865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr12:6720392-6720131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:221-475
               
               
               Cow position:chr12:28256993-28257242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):200, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr12:31948186-31947931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:221-476
               
               
               Cow position:chr12:24023739-24023985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:222-445
               
               
               Cow position:chr12:24032559-24032343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:222-466
               
               
               Cow position:chr12:32715107-32714866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 59

               
               
               Conread position:222-471
               
               
               Cow position:chr12:40110434-40110202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:223-471
               
               
               Cow position:chr12:23574825-23574587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:228-466
               
               
               Cow position:chr12:8943167-8943397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:228-466
               
               
               Cow position:chr12:23798156-23797930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:228-466
               
               
               Cow position:chr12:38774186-38774418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-475
               
               
               Cow position:chr12:1889521-1889772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:228-475
               
               
               Cow position:chr12:31959936-31959706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:229-453
               
               
               Cow position:chr12:9894838-9894616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:229-461
               
               
               Cow position:chr12:42234116-42233883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:229-467
               
               
               Cow position:chr12:19664476-19664710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:229-471
               
               
               Cow position:chr12:30438293-30438062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:229-471
               
               
               Cow position:chr12:34007357-34007120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:237-471
               
               
               Cow position:chr12:31228620-31228391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:238-404
               
               
               Cow position:chr12:31269201-31269034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-470
               
               
               Cow position:chr12:12637136-12637370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:238-471
               
               
               Cow position:chr12:19691187-19691417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr12:40910238-40910472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:238-477
               
               
               Cow position:chr12:15163186-15162960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:238-477
               
               
               Cow position:chr12:46333392-46333162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:239-465
               
               
               Cow position:chr12:42254713-42254490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:240-475
               
               
               Cow position:chr12:10491316-10491085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:241-471
               
               
               Cow position:chr12:32169584-32169357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):58, 67

               
               
               Conread position:243-441
               
               
               Cow position:chr12:38184636-38184443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:243-466
               
               
               Cow position:chr12:15122368-15122142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:243-466
               
               
               Cow position:chr12:45820324-45820537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:243-477
               
               
               Cow position:chr12:29921743-29921971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:246-443
               
               
               Cow position:chr12:15938227-15938422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:247-449
               
               
               Cow position:chr12:41215847-41216046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:247-459
               
               
               Cow position:chr12:9914827-9914616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-471
               
               
               Cow position:chr12:3906511-3906289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 54

               
               
               Conread position:247-471
               
               
               Cow position:chr12:22515694-22515919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-475
               
               
               Cow position:chr12:17774832-17774611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-475
               
               
               Cow position:chr12:34673302-34673532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:248-436
               
               
               Cow position:chr12:18943621-18943807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:248-464
               
               
               Cow position:chr12:9710171-9710387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:249-471
               
               
               Cow position:chr12:3056168-3055958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:250-448
               
               
               Cow position:chr12:15038941-15039137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:250-464
               
               
               Cow position:chr12:20071538-20071754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:250-465
               
               
               Cow position:chr12:5801075-5800857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):59, 145

               
               
               Conread position:250-471
               
               
               Cow position:chr12:19154579-19154801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr12:19508524-19508751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:253-477
               
               
               Cow position:chr12:30745748-30745526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:254-443
               
               
               Cow position:chr12:4596495-4596309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:254-459
               
               
               Cow position:chr12:20636121-20636330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:254-465
               
               
               Cow position:chr12:6210127-6210334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:259-471
               
               
               Cow position:chr12:28748967-28748755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:259-475
               
               
               Cow position:chr12:40028728-40028947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:259-477
               
               
               Cow position:chr12:20326800-20326580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:264-447
               
               
               Cow position:chr12:24107527-24107705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:264-465
               
               
               Cow position:chr12:28559316-28559122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:264-471
               
               
               Cow position:chr12:4162342-4162550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:264-475
               
               
               Cow position:chr12:7557898-7558091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:265-471
               
               
               Cow position:chr12:12178943-12178739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:268-471
               
               
               Cow position:chr12:1773648-1773850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:272-454
               
               
               Cow position:chr12:31261963-31261782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:274-471
               
               
               Cow position:chr12:3510572-3510384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:292-466
               
               
               Cow position:chr12:27562835-27563012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:300-471
               
               
               Cow position:chr12:30476465-30476298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:302-463
               
               
               Cow position:chr12:32391831-32391674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:305-466
               
               
               Cow position:chr12:44559565-44559410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:309-461
               
               
               Cow position:chr12:20354951-20354796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:309-471
               
               
               Cow position:chr12:25456094-25455935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:310-475
               
               
               Cow position:chr12:3039483-3039313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:316-471
               
               
               Cow position:chr12:7191296-7191445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:337-471
               
               
               Cow position:chr12:38511888-38512025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:348-470
               
               
               Cow position:chr12:24440760-24440636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:354-471
               
               
               Cow position:chr12:22260887-22261007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:354-475
               
               
               Cow position:chr12:18021531-18021405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:358-475
               
               
               Cow position:chr12:29161885-29162005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:367-473
               
               
               Cow position:chr12:40158317-40158424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:371-466
               
               
               Cow position:chr12:31882264-31882170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:140-389
               
               
               Cow position:chr13:18589299-18589545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):167, 9

               
               
               Conread position:141-477
               
               
               Cow position:chr13:2192512-2192849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:142-477
               
               
               Cow position:chr13:29630668-29630991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:143-466
               
               
               Cow position:chr13:24715024-24715369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 220

               
               
               Conread position:144-444
               
               
               Cow position:chr13:49457480-49457777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 169

               
               
               Conread position:144-471
               
               
               Cow position:chr13:26383423-26383105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:144-475
               
               
               Cow position:chr13:54094602-54094945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 212

               
               
               Conread position:155-451
               
               
               Cow position:chr13:13446348-13446053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:155-460
               
               
               Cow position:chr13:15194932-15194613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 169

               
               
               Conread position:155-464
               
               
               Cow position:chr13:20466479-20466161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 190

               
               
               Conread position:155-465
               
               
               Cow position:chr13:12745479-12745795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:155-465
               
               
               Cow position:chr13:19188102-19188425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):9, 193

               
               
               Conread position:155-472
               
               
               Cow position:chr13:20839369-20839694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:155-475
               
               
               Cow position:chr13:22085943-22085612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:155-477
               
               
               Cow position:chr13:20180222-20180554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 186

               
               
               Conread position:156-454
               
               
               Cow position:chr13:1958815-1959121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:156-463
               
               
               Cow position:chr13:33281813-33282128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 195

               
               
               Conread position:157-431
               
               
               Cow position:chr13:12323993-12324273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 201

               
               
               Conread position:158-453
               
               
               Cow position:chr13:47322600-47322291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:162-418
               
               
               Cow position:chr13:13578221-13577957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:162-455
               
               
               Cow position:chr13:22075484-22075788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 140

               
               
               Conread position:163-403
               
               
               Cow position:chr13:6887696-6887938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:163-443
               
               
               Cow position:chr13:7356446-7356713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):146, 17

               
               
               Conread position:163-447
               
               
               Cow position:chr13:17886332-17886615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:163-447
               
               
               Cow position:chr13:49200455-49200743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:163-448
               
               
               Cow position:chr13:1558699-1558419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:163-454
               
               
               Cow position:chr13:21628066-21627762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:163-455
               
               
               Cow position:chr13:56677837-56678130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:163-460
               
               
               Cow position:chr13:9664879-9665184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):58, 184

               
               
               Conread position:163-461
               
               
               Cow position:chr13:6079606-6079299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:163-461
               
               
               Cow position:chr13:33161179-33160872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:163-461
               
               
               Cow position:chr13:59688066-59687761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):68, 192

               
               
               Conread position:163-464
               
               
               Cow position:chr13:9802883-9803194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:163-464
               
               
               Cow position:chr13:17613159-17613469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 181

               
               
               Conread position:163-465
               
               
               Cow position:chr13:47188258-47188569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr13:626387-626685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:163-466
               
               
               Cow position:chr13:8839167-8838869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 173

               
               
               Conread position:163-466
               
               
               Cow position:chr13:15945290-15945603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:163-466
               
               
               Cow position:chr13:21155661-21155368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:163-466
               
               
               Cow position:chr13:34761499-34761800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:163-467
               
               
               Cow position:chr13:2803283-2803595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:163-467
               
               
               Cow position:chr13:48252171-48251858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:163-471
               
               
               Cow position:chr13:9975271-9974942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:163-471
               
               
               Cow position:chr13:12282634-12282964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:163-471
               
               
               Cow position:chr13:17346626-17346935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:163-473
               
               
               Cow position:chr13:46284793-46284484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:163-475
               
               
               Cow position:chr13:10932370-10932687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:163-475
               
               
               Cow position:chr13:16343507-16343823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:163-475
               
               
               Cow position:chr13:25435309-25434986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-475
               
               
               Cow position:chr13:34995515-34995191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):54, 191

               
               
               Conread position:163-477
               
               
               Cow position:chr13:43193986-43194313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:164-257
               
               
               Cow position:chr13:48064851-48064757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:164-354
               
               
               Cow position:chr13:22227935-22227740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:164-464
               
               
               Cow position:chr13:14717523-14717214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:164-466
               
               
               Cow position:chr13:8245516-8245211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:164-466
               
               
               Cow position:chr13:10845416-10845718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):55, 139

               
               
               Conread position:164-466
               
               
               Cow position:chr13:12521963-12521653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 187

               
               
               Conread position:164-466
               
               
               Cow position:chr13:17821460-17821143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 190

               
               
               Conread position:164-470
               
               
               Cow position:chr13:29814368-29814674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:164-471
               
               
               Cow position:chr13:12206859-12207173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:164-471
               
               
               Cow position:chr13:25537435-25537762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 187

               
               
               Conread position:164-471
               
               
               Cow position:chr13:29831629-29831303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:164-471
               
               
               Cow position:chr13:60966577-60966897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 158

               
               
               Conread position:164-477
               
               
               Cow position:chr13:6540503-6540171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):59, 234

               
               
               Conread position:165-400
               
               
               Cow position:chr13:18181952-18181714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:165-477
               
               
               Cow position:chr13:49847743-49848062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:166-399
               
               
               Cow position:chr13:52748977-52748738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:166-471
               
               
               Cow position:chr13:57494373-57494053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 137

               
               
               Conread position:167-359
               
               
               Cow position:chr13:52569185-52568979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:167-475
               
               
               Cow position:chr13:8652614-8652299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:169-409
               
               
               Cow position:chr13:60651086-60650835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 178

               
               
               Conread position:170-459
               
               
               Cow position:chr13:17569269-17568981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:170-466
               
               
               Cow position:chr13:32535478-32535784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:172-471
               
               
               Cow position:chr13:54582707-54583007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:173-461
               
               
               Cow position:chr13:21176487-21176202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:175-416
               
               
               Cow position:chr13:7190801-7191051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:175-471
               
               
               Cow position:chr13:57475583-57475286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:182-461
               
               
               Cow position:chr13:21668530-21668808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:189-466
               
               
               Cow position:chr13:6759950-6759668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:190-466
               
               
               Cow position:chr13:23270367-23270086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:190-475
               
               
               Cow position:chr13:40722869-40722570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:192-465
               
               
               Cow position:chr13:34728996-34728713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:196-448
               
               
               Cow position:chr13:19240279-19240544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 170

               
               
               Conread position:198-465
               
               
               Cow position:chr13:17159017-17158751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:200-459
               
               
               Cow position:chr13:21136042-21135782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 5

               
               
               Conread position:200-466
               
               
               Cow position:chr13:46430452-46430176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:200-472
               
               
               Cow position:chr13:38012194-38012488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:205-471
               
               
               Cow position:chr13:37640457-37640716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:208-466
               
               
               Cow position:chr13:20784460-20784713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):101, 134

               
               
               Conread position:210-465
               
               
               Cow position:chr13:11060859-11061111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:210-471
               
               
               Cow position:chr13:20360151-20360400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:212-436
               
               
               Cow position:chr13:185404-185626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:212-461
               
               
               Cow position:chr13:311312-311550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):154, 82

               
               
               Conread position:212-466
               
               
               Cow position:chr13:7663547-7663299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:212-477
               
               
               Cow position:chr13:45352905-45353183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 256

               
               
               Conread position:213-393
               
               
               Cow position:chr13:16020726-16020904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-400
               
               
               Cow position:chr13:17823075-17822892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-402
               
               
               Cow position:chr13:25428348-25428167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-403
               
               
               Cow position:chr13:17837825-17838011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-403
               
               
               Cow position:chr13:24110355-24110548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 150

               
               
               Conread position:213-409
               
               
               Cow position:chr13:17563615-17563804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:213-415
               
               
               Cow position:chr13:827120-827316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 95

               
               
               Conread position:213-415
               
               
               Cow position:chr13:20473809-20473608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:213-419
               
               
               Cow position:chr13:40491089-40491291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:213-419
               
               
               Cow position:chr13:42229188-42229397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:213-420
               
               
               Cow position:chr13:38873069-38872873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-431
               
               
               Cow position:chr13:3211424-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-440
               
               
               Cow position:chr13:44003576-44003816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-443
               
               
               Cow position:chr13:54128720-54128490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:213-447
               
               
               Cow position:chr13:55727777-55728006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr13:13765665-13765899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr13:14576088-14576320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-454
               
               
               Cow position:chr13:18995001-18995242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:213-456
               
               
               Cow position:chr13:19278970-19279207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:213-459
               
               
               Cow position:chr13:51901459-51901707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 130

               
               
               Conread position:213-466
               
               
               Cow position:chr13:9265951-9265707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr13:12547033-12546785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr13:15991356-15991102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr13:24585923-24586166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr13:25547707-25547461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr13:25579315-25579062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr13:38278272-38278010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:213-466
               
               
               Cow position:chr13:39367834-39368080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:213-466
               
               
               Cow position:chr13:41806647-41806900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-466
               
               
               Cow position:chr13:52055717-52055474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr13:52284691-52284934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-466
               
               
               Cow position:chr13:56148396-56148662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-467
               
               
               Cow position:chr13:4664981-4664740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:213-467
               
               
               Cow position:chr13:15193011-15192764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 125

               
               
               Conread position:213-470
               
               
               Cow position:chr13:37381676-37381935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr13:11321742-11321486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr13:12449111-12448862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr13:17439893-17439640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr13:17966334-17966079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr13:17971154-17970898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr13:18166607-18166863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr13:19022146-19022405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr13:20174616-20174880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr13:20706330-20706076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr13:21275734-21275985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-471
               
               
               Cow position:chr13:21283829-21283580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr13:24230089-24230342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr13:25695892-25695638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:213-471
               
               
               Cow position:chr13:26261913-26261668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr13:37069220-37069479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-471
               
               
               Cow position:chr13:37593072-37592808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr13:46111844-46112100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-471
               
               
               Cow position:chr13:52894022-52894277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr13:60973955-60974213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-472
               
               
               Cow position:chr13:56160571-56160299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-475
               
               
               Cow position:chr13:5758468-5758206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 130

               
               
               Conread position:213-475
               
               
               Cow position:chr13:10929113-10928855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 86

               
               
               Conread position:213-475
               
               
               Cow position:chr13:11260150-11260403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:213-475
               
               
               Cow position:chr13:18929404-18929667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-475
               
               
               Cow position:chr13:24753762-24754020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr13:28683237-28683498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr13:34261106-34261371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr13:51940609-51940870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr13:52586162-52585885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-476
               
               
               Cow position:chr13:37981869-37981613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:213-477
               
               
               Cow position:chr13:10989194-10988934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):211, 18

               
               
               Conread position:213-477
               
               
               Cow position:chr13:11096057-11096313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:213-477
               
               
               Cow position:chr13:37484404-37484137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 184

               
               
               Conread position:213-477
               
               
               Cow position:chr13:44201884-44202128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr13:54389146-54388880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:214-465
               
               
               Cow position:chr13:38329492-38329750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 249

               
               
               Conread position:214-466
               
               
               Cow position:chr13:19223531-19223770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:214-471
               
               
               Cow position:chr13:8609671-8609421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:215-440
               
               
               Cow position:chr13:21127460-21127244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:215-466
               
               
               Cow position:chr13:8362866-8362625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:215-471
               
               
               Cow position:chr13:6153906-6153652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:217-471
               
               
               Cow position:chr13:9246612-9246848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:218-461
               
               
               Cow position:chr13:49022987-49022754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr13:26480323-26480083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):202, 11

               
               
               Conread position:218-471
               
               
               Cow position:chr13:43762047-43762299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:218-475
               
               
               Cow position:chr13:46181667-46181928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:218-475
               
               
               Cow position:chr13:61990443-61990199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):206, 10

               
               
               Conread position:219-459
               
               
               Cow position:chr13:15885141-15884902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:219-465
               
               
               Cow position:chr13:53566483-53566719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:219-466
               
               
               Cow position:chr13:47964299-47964072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:220-471
               
               
               Cow position:chr13:17622172-17622411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:221-433
               
               
               Cow position:chr13:46329722-46329511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-434
               
               
               Cow position:chr13:56034975-56034765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-441
               
               
               Cow position:chr13:3989077-3989304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr13:46515945-46516163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-444
               
               
               Cow position:chr13:46044045-46044260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:221-448
               
               
               Cow position:chr13:13297552-13297782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:221-451
               
               
               Cow position:chr13:19320416-19320646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr13:23856095-23856335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr13:23167217-23166972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr13:972013-971768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr13:6442221-6441975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr13:9644007-9643761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:221-466
               
               
               Cow position:chr13:34281563-34281801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr13:55674324-55674084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-467
               
               
               Cow position:chr13:59170537-59170784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr13:8374888-8374642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:9900032-9900279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:221-471
               
               
               Cow position:chr13:11460517-11460751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:12202246-12202495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:15282062-15281807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:221-471
               
               
               Cow position:chr13:18172220-18172468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:20666502-20666259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:20679223-20679478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:24369466-24369710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:27525376-27525135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr13:37521859-37521607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr13:40943128-40943374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr13:6061124-6060871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr13:14063637-14063389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr13:25817411-25817656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr13:17799964-17800209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:222-466
               
               
               Cow position:chr13:25380846-25381087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:222-471
               
               
               Cow position:chr13:12876098-12875842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:223-465
               
               
               Cow position:chr13:43595228-43594988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:227-466
               
               
               Cow position:chr13:8201594-8201361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:228-465
               
               
               Cow position:chr13:32826586-32826331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:228-466
               
               
               Cow position:chr13:3315785-3315553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:228-471
               
               
               Cow position:chr13:2413920-2414160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:228-471
               
               
               Cow position:chr13:6389286-6389510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):158, 48

               
               
               Conread position:228-471
               
               
               Cow position:chr13:15110204-15110450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:228-471
               
               
               Cow position:chr13:26698608-26698367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:228-471
               
               
               Cow position:chr13:31813766-31814001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:228-471
               
               
               Cow position:chr13:45023319-45023082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:228-475
               
               
               Cow position:chr13:13176540-13176789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:228-475
               
               
               Cow position:chr13:18058360-18058110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:228-475
               
               
               Cow position:chr13:42200509-42200754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:229-474
               
               
               Cow position:chr13:18350728-18350975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:230-465
               
               
               Cow position:chr13:52749578-52749354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):194, 75

               
               
               Conread position:230-469
               
               
               Cow position:chr13:15041581-15041344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:230-471
               
               
               Cow position:chr13:11955225-11954980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:236-466
               
               
               Cow position:chr13:8555362-8555588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:237-466
               
               
               Cow position:chr13:23512269-23512492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:237-466
               
               
               Cow position:chr13:49520923-49520697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:237-471
               
               
               Cow position:chr13:32283027-32283254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:238-405
               
               
               Cow position:chr13:62008007-62008176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 130

               
               
               Conread position:238-456
               
               
               Cow position:chr13:43184981-43184756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:238-460
               
               
               Cow position:chr13:34263470-34263250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:238-464
               
               
               Cow position:chr13:1568832-1569046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):185, 45

               
               
               Conread position:238-464
               
               
               Cow position:chr13:20562893-20563119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:238-465
               
               
               Cow position:chr13:20650087-20649855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:238-466
               
               
               Cow position:chr13:7076157-7076382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:238-466
               
               
               Cow position:chr13:15195305-15195079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:238-466
               
               
               Cow position:chr13:15529137-15528907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:238-466
               
               
               Cow position:chr13:18243762-18243988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:238-466
               
               
               Cow position:chr13:25926690-25926917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:238-466
               
               
               Cow position:chr13:52879302-52879533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 112

               
               
               Conread position:238-470
               
               
               Cow position:chr13:151863-152083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:238-471
               
               
               Cow position:chr13:5263381-5263159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:238-471
               
               
               Cow position:chr13:5279302-5279055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:238-471
               
               
               Cow position:chr13:60430178-60429944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:238-475
               
               
               Cow position:chr13:6974061-6974297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-476
               
               
               Cow position:chr13:8524718-8524485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-476
               
               
               Cow position:chr13:45725792-45726031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:238-477
               
               
               Cow position:chr13:4208913-4208681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:239-443
               
               
               Cow position:chr13:10925021-10924810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:239-444
               
               
               Cow position:chr13:12614154-12614359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 46

               
               
               Conread position:239-466
               
               
               Cow position:chr13:1043068-1042836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:239-466
               
               
               Cow position:chr13:19393193-19393414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:239-466
               
               
               Cow position:chr13:25531889-25531663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:239-470
               
               
               Cow position:chr13:15974519-15974743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:239-471
               
               
               Cow position:chr13:9593406-9593638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:239-471
               
               
               Cow position:chr13:14771353-14771587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:239-471
               
               
               Cow position:chr13:32657899-32657666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:240-404
               
               
               Cow position:chr13:29773659-29773496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:242-443
               
               
               Cow position:chr13:620345-620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:243-465
               
               
               Cow position:chr13:48597814-48598034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:243-465
               
               
               Cow position:chr13:49804882-49805095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:243-471
               
               
               Cow position:chr13:5060652-5060878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:243-471
               
               
               Cow position:chr13:18696745-18696972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:246-471
               
               
               Cow position:chr13:40651842-40652063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:247-419
               
               
               Cow position:chr13:20137730-20137902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:247-432
               
               
               Cow position:chr13:16187987-16187806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:247-442
               
               
               Cow position:chr13:46736124-46736314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:247-449
               
               
               Cow position:chr13:13338765-13338969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-460
               
               
               Cow position:chr13:50713119-50713321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-466
               
               
               Cow position:chr13:46458533-46458747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:247-471
               
               
               Cow position:chr13:18491505-18491732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:247-471
               
               
               Cow position:chr13:52929620-52929839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:247-471
               
               
               Cow position:chr13:60509211-60508989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-473
               
               
               Cow position:chr13:60389579-60389354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:247-477
               
               
               Cow position:chr13:36771512-36771283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:250-441
               
               
               Cow position:chr13:44626280-44626469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-459
               
               
               Cow position:chr13:27550651-27550857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr13:21269670-21269461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:250-464
               
               
               Cow position:chr13:7488453-7488662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:250-464
               
               
               Cow position:chr13:45604504-45604299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-464
               
               
               Cow position:chr13:54702098-54702310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:250-465
               
               
               Cow position:chr13:1155791-1155584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:250-476
               
               
               Cow position:chr13:17338341-17338573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:250-477
               
               
               Cow position:chr13:55583107-55583332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:252-471
               
               
               Cow position:chr13:61166536-61166328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:253-435
               
               
               Cow position:chr13:22227806-22227626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:253-465
               
               
               Cow position:chr13:55316276-55316065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:254-471
               
               
               Cow position:chr13:53536392-53536173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:255-475
               
               
               Cow position:chr13:60329676-60329889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:259-454
               
               
               Cow position:chr13:17855293-17855484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-460
               
               
               Cow position:chr13:1363615-1363813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-471
               
               
               Cow position:chr13:13306017-13306228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:260-417
               
               
               Cow position:chr13:15964238-15964394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:264-460
               
               
               Cow position:chr13:13238502-13238696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:264-463
               
               
               Cow position:chr13:33631055-33631242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:264-464
               
               
               Cow position:chr13:28689393-28689591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:264-466
               
               
               Cow position:chr13:21039673-21039473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:264-471
               
               
               Cow position:chr13:18999461-18999672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:264-476
               
               
               Cow position:chr13:42092503-42092305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):160, 25

               
               
               Conread position:266-466
               
               
               Cow position:chr13:41253549-41253747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:268-443
               
               
               Cow position:chr13:15621740-15621917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:269-471
               
               
               Cow position:chr13:30026038-30026246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:272-466
               
               
               Cow position:chr13:20128600-20128790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:272-477
               
               
               Cow position:chr13:2463301-2463088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:274-467
               
               
               Cow position:chr13:16024525-16024717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:274-471
               
               
               Cow position:chr13:4420278-4420477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:283-466
               
               
               Cow position:chr13:10099043-10098866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:286-466
               
               
               Cow position:chr13:1779777-1779958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:289-471
               
               
               Cow position:chr13:62474848-62474673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:290-465
               
               
               Cow position:chr13:2774086-2774251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:290-471
               
               
               Cow position:chr13:19178224-19178406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:300-466
               
               
               Cow position:chr13:5752464-5752299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:302-460
               
               
               Cow position:chr13:34333973-34333818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:304-471
               
               
               Cow position:chr13:15869093-15869251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:305-434
               
               
               Cow position:chr13:13809593-13809467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:305-454
               
               
               Cow position:chr13:55947742-55947888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:305-466
               
               
               Cow position:chr13:6975825-6975668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:308-466
               
               
               Cow position:chr13:5091698-5091540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:308-471
               
               
               Cow position:chr13:41155063-41154902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:308-471
               
               
               Cow position:chr13:47312888-47313049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:308-471
               
               
               Cow position:chr13:54093716-54093874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:338-466
               
               
               Cow position:chr13:25249158-25249029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:338-477
               
               
               Cow position:chr13:563143-563002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:348-474
               
               
               Cow position:chr13:25261802-25261674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:349-477
               
               
               Cow position:chr13:37517129-37516999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:358-464
               
               
               Cow position:chr13:60690710-60690603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:359-464
               
               
               Cow position:chr13:4514478-4514584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:126-475
               
               
               Cow position:chr14:26108467-26108829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:139-444
               
               
               Cow position:chr14:45718406-45718105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:141-330
               
               
               Cow position:chr14:41531813-41531613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:149-420
               
               
               Cow position:chr14:33553053-33553320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:155-390
               
               
               Cow position:chr14:25398943-25399179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):158, 182

               
               
               Conread position:155-442
               
               
               Cow position:chr14:23050748-23050456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:155-444
               
               
               Cow position:chr14:18979329-18979041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:155-465
               
               
               Cow position:chr14:33774180-33773873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:155-466
               
               
               Cow position:chr14:21017979-21018295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:155-466
               
               
               Cow position:chr14:37679139-37678820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 195

               
               
               Conread position:155-466
               
               
               Cow position:chr14:47973848-47974166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:155-471
               
               
               Cow position:chr14:25386022-25385701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 60

               
               
               Conread position:155-475
               
               
               Cow position:chr14:18449123-18448812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):163, 74

               
               
               Conread position:158-466
               
               
               Cow position:chr14:18309452-18309117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 309

               
               
               Conread position:162-467
               
               
               Cow position:chr14:44861361-44861058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:163-337
               
               
               Cow position:chr14:38912359-38912529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:163-343
               
               
               Cow position:chr14:48212955-48213145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:163-414
               
               
               Cow position:chr14:16352211-16352475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 151

               
               
               Conread position:163-440
               
               
               Cow position:chr14:2189507-2189798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:163-446
               
               
               Cow position:chr14:45849345-45849056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 55

               
               
               Conread position:163-447
               
               
               Cow position:chr14:29592863-29592559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 170

               
               
               Conread position:163-465
               
               
               Cow position:chr14:21691404-21691092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-466
               
               
               Cow position:chr14:19188921-19189218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:163-466
               
               
               Cow position:chr14:38355061-38355367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:163-466
               
               
               Cow position:chr14:39037092-39037418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:163-467
               
               
               Cow position:chr14:50589537-50589200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:163-469
               
               
               Cow position:chr14:13809807-13810123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:163-471
               
               
               Cow position:chr14:10721849-10721542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:163-475
               
               
               Cow position:chr14:10906602-10906911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 55

               
               
               Conread position:163-475
               
               
               Cow position:chr14:35700300-35700623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):56, 193

               
               
               Conread position:164-443
               
               
               Cow position:chr14:19863549-19863277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:164-466
               
               
               Cow position:chr14:8786683-8786369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):59, 152

               
               
               Conread position:164-466
               
               
               Cow position:chr14:9019895-9020209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 189

               
               
               Conread position:164-466
               
               
               Cow position:chr14:44084622-44084297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 311

               
               
               Conread position:164-471
               
               
               Cow position:chr14:21284507-21284814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:164-471
               
               
               Cow position:chr14:33247566-33247246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:164-471
               
               
               Cow position:chr14:36555276-36554968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:164-475
               
               
               Cow position:chr14:7648147-7647846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:164-475
               
               
               Cow position:chr14:13006378-13006704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:164-475
               
               
               Cow position:chr14:25231762-25231452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 73

               
               
               Conread position:165-304
               
               
               Cow position:chr14:26805178-26805028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:165-441
               
               
               Cow position:chr14:28803864-28803590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 143

               
               
               Conread position:165-454
               
               
               Cow position:chr14:25639897-25639607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:165-459
               
               
               Cow position:chr14:46997907-46998222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:165-461
               
               
               Cow position:chr14:46654659-46654368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:165-466
               
               
               Cow position:chr14:20795651-20795956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:165-466
               
               
               Cow position:chr14:37884526-37884231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:165-466
               
               
               Cow position:chr14:48412991-48412698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 42

               
               
               Conread position:165-467
               
               
               Cow position:chr14:34355825-34355510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:165-475
               
               
               Cow position:chr14:16256629-16256962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 201

               
               
               Conread position:166-474
               
               
               Cow position:chr14:7959654-7959961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:167-434
               
               
               Cow position:chr14:37422916-37422637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:167-475
               
               
               Cow position:chr14:47027496-47027175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):52, 198

               
               
               Conread position:168-412
               
               
               Cow position:chr14:12127539-12127284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 184

               
               
               Conread position:169-437
               
               
               Cow position:chr14:41253120-41252835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:170-465
               
               
               Cow position:chr14:18904728-18904430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:170-475
               
               
               Cow position:chr14:22988920-22989228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:183-471
               
               
               Cow position:chr14:41127779-41128080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):48, 177

               
               
               Conread position:187-465
               
               
               Cow position:chr14:22459961-22459695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:187-465
               
               
               Cow position:chr14:23107218-23107510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:190-420
               
               
               Cow position:chr14:23478730-23478955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:190-471
               
               
               Cow position:chr14:30661895-30662174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:192-441
               
               
               Cow position:chr14:5222382-5222131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:193-475
               
               
               Cow position:chr14:45605001-45605287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:197-477
               
               
               Cow position:chr14:37447547-37447276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:206-451
               
               
               Cow position:chr14:33309577-33309339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:206-471
               
               
               Cow position:chr14:5572870-5573129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:206-471
               
               
               Cow position:chr14:40165349-40165609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:208-471
               
               
               Cow position:chr14:39778679-39778937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:210-471
               
               
               Cow position:chr14:5835841-5836088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:210-471
               
               
               Cow position:chr14:34199914-34199657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:211-454
               
               
               Cow position:chr14:23080834-23080593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:212-431
               
               
               Cow position:chr14:1978142-1977923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:212-434
               
               
               Cow position:chr14:29698430-29698207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 132

               
               
               Conread position:212-465
               
               
               Cow position:chr14:31784890-31785150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:212-471
               
               
               Cow position:chr14:24796499-24796240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:212-473
               
               
               Cow position:chr14:46685238-46685487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:212-475
               
               
               Cow position:chr14:5630094-5630352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:213-387
               
               
               Cow position:chr14:15039681-15039508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-409
               
               
               Cow position:chr14:4282574-4282383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-409
               
               
               Cow position:chr14:7695198-7695392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:213-436
               
               
               Cow position:chr14:6541794-6541571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:213-436
               
               
               Cow position:chr14:7036425-7036202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-442
               
               
               Cow position:chr14:1868868-1868643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:213-442
               
               
               Cow position:chr14:35503292-35503523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr14:22941796-22941562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-443
               
               
               Cow position:chr14:26097761-26097536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):116, 91

               
               
               Conread position:213-444
               
               
               Cow position:chr14:23424194-23424418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-444
               
               
               Cow position:chr14:23442955-23443179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-444
               
               
               Cow position:chr14:42436957-42437187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 96

               
               
               Conread position:213-448
               
               
               Cow position:chr14:19951498-19951733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-453
               
               
               Cow position:chr14:10078200-10078437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-453
               
               
               Cow position:chr14:20600317-20600556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr14:9308162-9308397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):107, 132

               
               
               Conread position:213-454
               
               
               Cow position:chr14:10858366-10858603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:213-455
               
               
               Cow position:chr14:14316819-14317055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:213-461
               
               
               Cow position:chr14:38144175-38143935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:213-465
               
               
               Cow position:chr14:4227290-4227022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 258

               
               
               Conread position:213-465
               
               
               Cow position:chr14:34983799-34984044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 126

               
               
               Conread position:213-466
               
               
               Cow position:chr14:1868451-1868201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):185, 90

               
               
               Conread position:213-466
               
               
               Cow position:chr14:4877297-4877049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:213-466
               
               
               Cow position:chr14:8101725-8101971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr14:20640697-20640445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):90, 95

               
               
               Conread position:213-466
               
               
               Cow position:chr14:22583086-22583323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:213-466
               
               
               Cow position:chr14:33457111-33456858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr14:27076909-27077168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-467
               
               
               Cow position:chr14:37883984-37883732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:213-468
               
               
               Cow position:chr14:12035342-12035592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:213-470
               
               
               Cow position:chr14:24387373-24387634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr14:1646252-1646005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr14:4203166-4202906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr14:6735931-6735673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr14:13385301-13385557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr14:14622244-14621987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr14:16550071-16549817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-471
               
               
               Cow position:chr14:17841359-17841102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr14:19129438-19129698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr14:19394295-19394547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr14:19594205-19593949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 210

               
               
               Conread position:213-471
               
               
               Cow position:chr14:19618818-19618565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr14:21933411-21933154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr14:21964069-21964308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:213-471
               
               
               Cow position:chr14:25779034-25779278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):211, 93

               
               
               Conread position:213-471
               
               
               Cow position:chr14:28115254-28114999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr14:35381524-35381777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr14:38920884-38921136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:213-471
               
               
               Cow position:chr14:39618444-39618188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 148

               
               
               Conread position:213-471
               
               
               Cow position:chr14:41749827-41749571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:213-472
               
               
               Cow position:chr14:48740935-48740683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:213-475
               
               
               Cow position:chr14:4990935-4991191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-475
               
               
               Cow position:chr14:20110790-20110527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr14:24981391-24981648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr14:38747610-38747859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):211, 80

               
               
               Conread position:213-475
               
               
               Cow position:chr14:44848437-44848180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:213-475
               
               
               Cow position:chr14:49086239-49086502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-476
               
               
               Cow position:chr14:21357490-21357743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-477
               
               
               Cow position:chr14:16032944-16033201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:214-406
               
               
               Cow position:chr14:1796126-1796312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:214-416
               
               
               Cow position:chr14:16834255-16834457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:215-471
               
               
               Cow position:chr14:47672947-47672698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):195, 97

               
               
               Conread position:216-471
               
               
               Cow position:chr14:40283554-40283807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:218-466
               
               
               Cow position:chr14:15492530-15492778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:218-471
               
               
               Cow position:chr14:20016769-20016514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:219-466
               
               
               Cow position:chr14:39434318-39434078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:221-416
               
               
               Cow position:chr14:36453688-36453499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:221-438
               
               
               Cow position:chr14:6226683-6226472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:221-443
               
               
               Cow position:chr14:18763503-18763285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:221-451
               
               
               Cow position:chr14:41472035-41471800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:221-464
               
               
               Cow position:chr14:23712621-23712867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:221-465
               
               
               Cow position:chr14:35420823-35420580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr14:27592015-27591772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr14:35018812-35018573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr14:40230694-40230456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):203, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr14:32452190-32452440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr14:33830243-33830484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr14:38168633-38168868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr14:42155031-42154777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:221-471
               
               
               Cow position:chr14:42330294-42330538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:221-476
               
               
               Cow position:chr14:1859682-1859423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:222-465
               
               
               Cow position:chr14:9837951-9837713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:223-475
               
               
               Cow position:chr14:6175529-6175776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:223-475
               
               
               Cow position:chr14:38378958-38379212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:228-419
               
               
               Cow position:chr14:41302883-41302698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:228-465
               
               
               Cow position:chr14:41180767-41180517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:228-466
               
               
               Cow position:chr14:12856547-12856779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:228-471
               
               
               Cow position:chr14:48838542-48838782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:228-473
               
               
               Cow position:chr14:12511949-12511712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):196, 37

               
               
               Conread position:229-464
               
               
               Cow position:chr14:25378546-25378314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:229-466
               
               
               Cow position:chr14:25403987-25403759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:229-471
               
               
               Cow position:chr14:25001983-25002221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:230-464
               
               
               Cow position:chr14:49021949-49021722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:230-466
               
               
               Cow position:chr14:28003917-28004159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 154

               
               
               Conread position:230-466
               
               
               Cow position:chr14:48961531-48961761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:230-471
               
               
               Cow position:chr14:17755517-17755750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:230-471
               
               
               Cow position:chr14:45052392-45052630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):194, 71

               
               
               Conread position:230-477
               
               
               Cow position:chr14:46973388-46973628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:237-419
               
               
               Cow position:chr14:1708700-1708522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:237-465
               
               
               Cow position:chr14:18657651-18657422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:238-441
               
               
               Cow position:chr14:14187289-14187490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:238-441
               
               
               Cow position:chr14:40754290-40754085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:238-443
               
               
               Cow position:chr14:28378316-28378520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:238-454
               
               
               Cow position:chr14:44257880-44258095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-464
               
               
               Cow position:chr14:7582492-7582271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:238-466
               
               
               Cow position:chr14:11615264-11615040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:238-466
               
               
               Cow position:chr14:34221018-34221237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:238-466
               
               
               Cow position:chr14:36166900-36167120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:238-471
               
               
               Cow position:chr14:15055034-15054802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr14:20385028-20384796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-475
               
               
               Cow position:chr14:8750034-8750271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:238-475
               
               
               Cow position:chr14:31130418-31130187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-477
               
               
               Cow position:chr14:36289841-36289606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:238-477
               
               
               Cow position:chr14:40432883-40433113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:239-448
               
               
               Cow position:chr14:50362752-50362958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:240-471
               
               
               Cow position:chr14:10609639-10609878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 178

               
               
               Conread position:241-471
               
               
               Cow position:chr14:33338515-33338293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:243-442
               
               
               Cow position:chr14:19851971-19851774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:243-475
               
               
               Cow position:chr14:41325485-41325244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:247-460
               
               
               Cow position:chr14:24922066-24922279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:247-465
               
               
               Cow position:chr14:3564250-3564456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:247-465
               
               
               Cow position:chr14:16237546-16237325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:247-466
               
               
               Cow position:chr14:32732718-32732937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:247-477
               
               
               Cow position:chr14:15913573-15913352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):178, 55

               
               
               Conread position:248-454
               
               
               Cow position:chr14:14417529-14417326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:250-438
               
               
               Cow position:chr14:26222705-26222899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:250-460
               
               
               Cow position:chr14:14949244-14949034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:250-466
               
               
               Cow position:chr14:24607936-24608148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:250-471
               
               
               Cow position:chr14:12667698-12667919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:250-471
               
               
               Cow position:chr14:28795641-28795860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-473
               
               
               Cow position:chr14:37103179-37103404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-475
               
               
               Cow position:chr14:22966724-22966946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:253-471
               
               
               Cow position:chr14:19372311-19372528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:255-466
               
               
               Cow position:chr14:47591939-47591736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:258-466
               
               
               Cow position:chr14:6599980-6599769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:259-443
               
               
               Cow position:chr14:27823410-27823592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:259-471
               
               
               Cow position:chr14:27919757-27919550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:259-477
               
               
               Cow position:chr14:27305122-27305351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:263-466
               
               
               Cow position:chr14:14182326-14182527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:264-465
               
               
               Cow position:chr14:41479679-41479479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:264-473
               
               
               Cow position:chr14:20010328-20010120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:265-459
               
               
               Cow position:chr14:25681911-25682106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:266-466
               
               
               Cow position:chr14:26191119-26190917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:269-471
               
               
               Cow position:chr14:20712702-20712500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:271-460
               
               
               Cow position:chr14:33341744-33341934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:272-467
               
               
               Cow position:chr14:33643785-33643599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:272-473
               
               
               Cow position:chr14:33538945-33538731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 197

               
               
               Conread position:274-460
               
               
               Cow position:chr14:12324412-12324601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:276-471
               
               
               Cow position:chr14:33828157-33828348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:283-475
               
               
               Cow position:chr14:15032760-15032952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:292-465
               
               
               Cow position:chr14:35819602-35819431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:292-466
               
               
               Cow position:chr14:8754334-8754511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:295-475
               
               
               Cow position:chr14:7482070-7482249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:300-475
               
               
               Cow position:chr14:20483436-20483266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:309-471
               
               
               Cow position:chr14:19221907-19222069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:310-459
               
               
               Cow position:chr14:26456541-26456685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr14:27312455-27312613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr14:37435271-37435108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:310-474
               
               
               Cow position:chr14:40347129-40346969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:312-471
               
               
               Cow position:chr14:42918117-42918276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:315-465
               
               
               Cow position:chr14:38673595-38673450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:316-471
               
               
               Cow position:chr14:22381515-22381367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:318-454
               
               
               Cow position:chr14:37467722-37467590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:319-466
               
               
               Cow position:chr14:19513372-19513237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:319-477
               
               
               Cow position:chr14:24797537-24797380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:336-475
               
               
               Cow position:chr14:24991877-24992014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:347-471
               
               
               Cow position:chr14:12614031-12613906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:348-471
               
               
               Cow position:chr14:19624149-19624273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:353-475
               
               
               Cow position:chr14:43046216-43046343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:359-454
               
               
               Cow position:chr14:23591310-23591405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:126-475
               
               
               Cow position:chr15:915951-915608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:131-466
               
               
               Cow position:chr15:12170129-12170471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 211

               
               
               Conread position:132-474
               
               
               Cow position:chr15:37931871-37931523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:142-465
               
               
               Cow position:chr15:12163622-12163291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 209

               
               
               Conread position:143-461
               
               
               Cow position:chr15:24284883-24285205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 62

               
               
               Conread position:144-473
               
               
               Cow position:chr15:9971078-9970740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:145-475
               
               
               Cow position:chr15:7192363-7192022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):74, 200

               
               
               Conread position:154-471
               
               
               Cow position:chr15:26573288-26573612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:155-355
               
               
               Cow position:chr15:38845816-38846022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 188

               
               
               Conread position:155-460
               
               
               Cow position:chr15:49739124-49738822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:155-465
               
               
               Cow position:chr15:20482937-20482613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 187

               
               
               Conread position:155-477
               
               
               Cow position:chr15:42142764-42143095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):9, 194

               
               
               Conread position:157-443
               
               
               Cow position:chr15:27247418-27247705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 146

               
               
               Conread position:158-419
               
               
               Cow position:chr15:26934036-26933759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:162-443
               
               
               Cow position:chr15:450133-449857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:162-465
               
               
               Cow position:chr15:15214934-15215248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:162-466
               
               
               Cow position:chr15:11646560-11646259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:162-476
               
               
               Cow position:chr15:2145216-2144892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:163-356
               
               
               Cow position:chr15:30958292-30958094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:163-362
               
               
               Cow position:chr15:23992768-23992972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:163-368
               
               
               Cow position:chr15:1017830-1017614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:163-398
               
               
               Cow position:chr15:37284379-37284616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:163-401
               
               
               Cow position:chr15:31042782-31043032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:163-433
               
               
               Cow position:chr15:43130242-43130509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):146, 75

               
               
               Conread position:163-435
               
               
               Cow position:chr15:13846665-13846393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:163-454
               
               
               Cow position:chr15:9781401-9781684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:163-459
               
               
               Cow position:chr15:14020397-14020694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:163-461
               
               
               Cow position:chr15:24411339-24411637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 136

               
               
               Conread position:163-461
               
               
               Cow position:chr15:43612002-43612291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:163-465
               
               
               Cow position:chr15:43776271-43776573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):63, 175

               
               
               Conread position:163-466
               
               
               Cow position:chr15:13554283-13554583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:163-466
               
               
               Cow position:chr15:22530981-22531290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 145

               
               
               Conread position:163-466
               
               
               Cow position:chr15:33624871-33625179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:163-467
               
               
               Cow position:chr15:9648789-9648475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:163-471
               
               
               Cow position:chr15:19402905-19403215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:163-475
               
               
               Cow position:chr15:10570695-10570375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:163-475
               
               
               Cow position:chr15:44252284-44252606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:163-475
               
               
               Cow position:chr15:47821733-47822048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 134

               
               
               Conread position:163-475
               
               
               Cow position:chr15:50177027-50177348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:164-328
               
               
               Cow position:chr15:21681836-21682014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:164-397
               
               
               Cow position:chr15:19920409-19920175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:164-416
               
               
               Cow position:chr15:4508070-4508327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:164-444
               
               
               Cow position:chr15:6749926-6749639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 141

               
               
               Conread position:164-465
               
               
               Cow position:chr15:5535678-5535985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:164-466
               
               
               Cow position:chr15:31907572-31907877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:165-441
               
               
               Cow position:chr15:31545428-31545152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):64, 186

               
               
               Conread position:165-452
               
               
               Cow position:chr15:51307768-51307464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 161

               
               
               Conread position:165-454
               
               
               Cow position:chr15:39894518-39894806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:165-461
               
               
               Cow position:chr15:31617086-31616783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 186

               
               
               Conread position:165-471
               
               
               Cow position:chr15:37204972-37205278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:166-444
               
               
               Cow position:chr15:5717622-5717917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 185

               
               
               Conread position:166-471
               
               
               Cow position:chr15:27973303-27972981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 189

               
               
               Conread position:167-449
               
               
               Cow position:chr15:39326597-39326299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 186

               
               
               Conread position:168-466
               
               
               Cow position:chr15:21836612-21836919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 132

               
               
               Conread position:175-471
               
               
               Cow position:chr15:53045947-53045645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:177-466
               
               
               Cow position:chr15:7962014-7962306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:179-466
               
               
               Cow position:chr15:22854344-22854633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:180-475
               
               
               Cow position:chr15:9494356-9494054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:181-461
               
               
               Cow position:chr15:17213393-17213673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:181-471
               
               
               Cow position:chr15:11658622-11658335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:183-466
               
               
               Cow position:chr15:12304586-12304870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 165

               
               
               Conread position:183-474
               
               
               Cow position:chr15:26903140-26903435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:189-466
               
               
               Cow position:chr15:26421655-26421370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):6, 118

               
               
               Conread position:189-471
               
               
               Cow position:chr15:43599144-43599418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 148

               
               
               Conread position:192-477
               
               
               Cow position:chr15:11011646-11011360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:198-471
               
               
               Cow position:chr15:8354005-8354277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 149

               
               
               Conread position:198-471
               
               
               Cow position:chr15:50341084-50341354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 91

               
               
               Conread position:200-454
               
               
               Cow position:chr15:18017894-18018141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:200-475
               
               
               Cow position:chr15:6462527-6462259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:205-458
               
               
               Cow position:chr15:42195305-42195047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:206-466
               
               
               Cow position:chr15:15573863-15573595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 135

               
               
               Conread position:207-471
               
               
               Cow position:chr15:11996053-11995792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:207-471
               
               
               Cow position:chr15:17100738-17100476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:212-431
               
               
               Cow position:chr15:47843272-47843054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:212-441
               
               
               Cow position:chr15:31928918-31928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 125

               
               
               Conread position:213-400
               
               
               Cow position:chr15:9497521-9497337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-403
               
               
               Cow position:chr15:14176520-14176334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-413
               
               
               Cow position:chr15:41527993-41527802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):107, 92

               
               
               Conread position:213-419
               
               
               Cow position:chr15:35441099-35440894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-422
               
               
               Cow position:chr15:32977867-32977661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-422
               
               
               Cow position:chr15:39286429-39286228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:213-434
               
               
               Cow position:chr15:6905512-6905732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-435
               
               
               Cow position:chr15:21166446-21166218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:213-436
               
               
               Cow position:chr15:19950458-19950673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-438
               
               
               Cow position:chr15:10660576-10660351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-442
               
               
               Cow position:chr15:35205173-35204943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:213-443
               
               
               Cow position:chr15:5158353-5158581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 149

               
               
               Conread position:213-443
               
               
               Cow position:chr15:16928115-16927891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 132

               
               
               Conread position:213-443
               
               
               Cow position:chr15:34284432-34284205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:213-451
               
               
               Cow position:chr15:5929876-5930107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:213-454
               
               
               Cow position:chr15:4295742-4295982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-454
               
               
               Cow position:chr15:30470993-30470752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 139

               
               
               Conread position:213-461
               
               
               Cow position:chr15:13285001-13285260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-464
               
               
               Cow position:chr15:22553562-22553316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:213-464
               
               
               Cow position:chr15:38883128-38883379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 80

               
               
               Conread position:213-464
               
               
               Cow position:chr15:49273938-49274178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-465
               
               
               Cow position:chr15:10608326-10608078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:213-465
               
               
               Cow position:chr15:12723068-12723315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:213-465
               
               
               Cow position:chr15:16616171-16616429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:213-465
               
               
               Cow position:chr15:26919296-26919050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr15:1330124-1329874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr15:3700308-3700057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr15:7429949-7430206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr15:9107014-9107265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):97, 28

               
               
               Conread position:213-466
               
               
               Cow position:chr15:12870885-12870635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-466
               
               
               Cow position:chr15:17337341-17337587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:213-466
               
               
               Cow position:chr15:19186634-19186390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:213-466
               
               
               Cow position:chr15:19771115-19771362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr15:21893758-21894010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-466
               
               
               Cow position:chr15:27900531-27900280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr15:42789169-42788922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr15:43626448-43626697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-467
               
               
               Cow position:chr15:22939346-22939095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 121

               
               
               Conread position:213-467
               
               
               Cow position:chr15:29330985-29331233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:213-469
               
               
               Cow position:chr15:16112379-16112633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-469
               
               
               Cow position:chr15:17233172-17233425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-470
               
               
               Cow position:chr15:36353647-36353901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr15:286457-286712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr15:608125-608380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr15:795043-794783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr15:1804359-1804098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:213-471
               
               
               Cow position:chr15:2141324-2141066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr15:2953155-2952895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr15:16657452-16657727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr15:20422799-20422545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr15:20459329-20459066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr15:20487224-20486979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 113

               
               
               Conread position:213-471
               
               
               Cow position:chr15:22136669-22136916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr15:22531647-22531890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr15:22871593-22871840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr15:23275521-23275768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr15:23572707-23572445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:213-471
               
               
               Cow position:chr15:23798551-23798290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr15:24616550-24616807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr15:30047566-30047309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr15:32324226-32323971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:213-471
               
               
               Cow position:chr15:33976716-33976455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr15:34139960-34140211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr15:34207208-34206955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):152, 90

               
               
               Conread position:213-471
               
               
               Cow position:chr15:35112903-35112644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr15:36259625-36259369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr15:36391653-36391901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr15:37381606-37381861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:213-471
               
               
               Cow position:chr15:39316863-39316601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr15:39598221-39598476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr15:41000091-40999835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:213-475
               
               
               Cow position:chr15:1297718-1297980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:213-475
               
               
               Cow position:chr15:18671475-18671213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:213-475
               
               
               Cow position:chr15:20534471-20534207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr15:26912093-26911838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-476
               
               
               Cow position:chr15:39621317-39621582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chr15:22938783-22938530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chr15:49922113-49922381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:215-465
               
               
               Cow position:chr15:16603806-16604050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-465
               
               
               Cow position:chr15:35945511-35945753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-467
               
               
               Cow position:chr15:21803676-21803441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:215-475
               
               
               Cow position:chr15:9178220-9177970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:216-443
               
               
               Cow position:chr15:12785412-12785630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:217-471
               
               
               Cow position:chr15:5235014-5234770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:219-464
               
               
               Cow position:chr15:21941859-21941620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:219-466
               
               
               Cow position:chr15:11957526-11957770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:219-467
               
               
               Cow position:chr15:4178958-4178707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr15:21389178-21388934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-475
               
               
               Cow position:chr15:2968323-2968576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:219-475
               
               
               Cow position:chr15:9928345-9928601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:219-475
               
               
               Cow position:chr15:39599433-39599679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:221-419
               
               
               Cow position:chr15:4919078-4918885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):149, 11

               
               
               Conread position:221-429
               
               
               Cow position:chr15:25906895-25907110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-448
               
               
               Cow position:chr15:28258469-28258244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:221-454
               
               
               Cow position:chr15:225817-225588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:221-454
               
               
               Cow position:chr15:662480-662251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr15:17870296-17870068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:221-460
               
               
               Cow position:chr15:1857712-1857950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-465
               
               
               Cow position:chr15:17762897-17763135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr15:5566907-5567171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 254

               
               
               Conread position:221-466
               
               
               Cow position:chr15:16667518-16667274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:221-466
               
               
               Cow position:chr15:17084197-17084437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr15:24941385-24941147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:221-466
               
               
               Cow position:chr15:29604712-29604487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr15:45584710-45584950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:221-471
               
               
               Cow position:chr15:6969971-6970216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:221-471
               
               
               Cow position:chr15:10335745-10335990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr15:20351820-20352063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr15:35642003-35642254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr15:40798440-40798195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:221-471
               
               
               Cow position:chr15:43750467-43750748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 268

               
               
               Conread position:221-475
               
               
               Cow position:chr15:10246006-10245768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-475
               
               
               Cow position:chr15:10737753-10737506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:222-454
               
               
               Cow position:chr15:12655928-12655697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:223-471
               
               
               Cow position:chr15:50322585-50322829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:227-414
               
               
               Cow position:chr15:5727648-5727829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:228-452
               
               
               Cow position:chr15:33178432-33178209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:228-465
               
               
               Cow position:chr15:35417631-35417394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:228-471
               
               
               Cow position:chr15:5726319-5726558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:228-473
               
               
               Cow position:chr15:29810117-29810350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):196, 82

               
               
               Conread position:228-475
               
               
               Cow position:chr15:4534905-4535150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:228-475
               
               
               Cow position:chr15:20391281-20391039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:229-454
               
               
               Cow position:chr15:10231755-10231524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:229-465
               
               
               Cow position:chr15:13387072-13387307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:229-466
               
               
               Cow position:chr15:3726119-3726347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:229-471
               
               
               Cow position:chr15:1722855-1722617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:230-471
               
               
               Cow position:chr15:38837745-38837980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:230-475
               
               
               Cow position:chr15:50957804-50957556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:237-454
               
               
               Cow position:chr15:51898231-51898448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:237-477
               
               
               Cow position:chr15:42415257-42415500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:238-432
               
               
               Cow position:chr15:36793490-36793297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):69, 153

               
               
               Conread position:238-435
               
               
               Cow position:chr15:8665596-8665393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:238-454
               
               
               Cow position:chr15:39436221-39436438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:238-461
               
               
               Cow position:chr15:16639781-16640004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:238-464
               
               
               Cow position:chr15:11559351-11559128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr15:4138140-4138362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:238-466
               
               
               Cow position:chr15:10088323-10088548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr15:39405748-39405960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:238-467
               
               
               Cow position:chr15:6530844-6530619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr15:1083372-1083142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr15:17353642-17353414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:238-471
               
               
               Cow position:chr15:21366193-21365958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr15:21420942-21421177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:238-475
               
               
               Cow position:chr15:4418396-4418163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-475
               
               
               Cow position:chr15:16583688-16583468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):186, 71

               
               
               Conread position:238-475
               
               
               Cow position:chr15:23568123-23567882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:239-441
               
               
               Cow position:chr15:12359039-12359240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:239-466
               
               
               Cow position:chr15:31599339-31599560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:240-470
               
               
               Cow position:chr15:7308151-7307920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:241-466
               
               
               Cow position:chr15:44658367-44658586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:242-466
               
               
               Cow position:chr15:17859220-17859009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:243-466
               
               
               Cow position:chr15:47280130-47279911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:243-469
               
               
               Cow position:chr15:13515375-13515600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:243-471
               
               
               Cow position:chr15:14870752-14870976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:246-439
               
               
               Cow position:chr15:24797798-24797609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:247-471
               
               
               Cow position:chr15:20370442-20370223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):131, 61

               
               
               Conread position:247-471
               
               
               Cow position:chr15:23768244-23768029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-471
               
               
               Cow position:chr15:40957592-40957811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:247-471
               
               
               Cow position:chr15:45479015-45479240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:248-438
               
               
               Cow position:chr15:37865380-37865567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-443
               
               
               Cow position:chr15:22930336-22930138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:248-443
               
               
               Cow position:chr15:38036933-38036735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:248-466
               
               
               Cow position:chr15:15880940-15881160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:248-470
               
               
               Cow position:chr15:2668919-2669132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:250-454
               
               
               Cow position:chr15:43914079-43913870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:250-459
               
               
               Cow position:chr15:20472532-20472327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-460
               
               
               Cow position:chr15:25585074-25584870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-464
               
               
               Cow position:chr15:23114850-23115069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:250-464
               
               
               Cow position:chr15:33284893-33285108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:250-471
               
               
               Cow position:chr15:11560499-11560278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-477
               
               
               Cow position:chr15:21832420-21832183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 230

               
               
               Conread position:251-454
               
               
               Cow position:chr15:23696896-23696693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:252-471
               
               
               Cow position:chr15:41620172-41619953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:252-477
               
               
               Cow position:chr15:36782312-36782088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:255-415
               
               
               Cow position:chr15:44250670-44250830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:257-443
               
               
               Cow position:chr15:5683168-5683347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:258-471
               
               
               Cow position:chr15:21907959-21908169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:259-457
               
               
               Cow position:chr15:16448708-16448910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:262-465
               
               
               Cow position:chr15:43248746-43248543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:264-466
               
               
               Cow position:chr15:27280901-27281097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:264-466
               
               
               Cow position:chr15:31857621-31857817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-471
               
               
               Cow position:chr15:5632711-5632912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:264-473
               
               
               Cow position:chr15:40343274-40343495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:267-471
               
               
               Cow position:chr15:9072407-9072195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:268-475
               
               
               Cow position:chr15:33770651-33770860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:274-461
               
               
               Cow position:chr15:19119572-19119380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:286-471
               
               
               Cow position:chr15:9871365-9871180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:290-464
               
               
               Cow position:chr15:40009598-40009424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:292-472
               
               
               Cow position:chr15:36725116-36724946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:299-473
               
               
               Cow position:chr15:29861390-29861563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:305-464
               
               
               Cow position:chr15:31483525-31483677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:315-475
               
               
               Cow position:chr15:13684184-13684029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:319-471
               
               
               Cow position:chr15:21522874-21523021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:319-477
               
               
               Cow position:chr15:7750049-7749892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:334-471
               
               
               Cow position:chr15:33678800-33678930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:336-464
               
               
               Cow position:chr15:31502701-31502576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:348-460
               
               
               Cow position:chr15:11363066-11362955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:352-477
               
               
               Cow position:chr15:5691501-5691623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:353-466
               
               
               Cow position:chr15:34145041-34144926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:355-470
               
               
               Cow position:chr15:15025525-15025644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:358-471
               
               
               Cow position:chr15:41583031-41583144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:139-466
               
               
               Cow position:chr16:45693338-45693005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:143-464
               
               
               Cow position:chr16:37719345-37719019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:145-466
               
               
               Cow position:chr16:13660045-13660375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 148

               
               
               Conread position:154-442
               
               
               Cow position:chr16:54226414-54226715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 151

               
               
               Conread position:155-438
               
               
               Cow position:chr16:44580897-44581183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:155-443
               
               
               Cow position:chr16:16565307-16565006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 205

               
               
               Conread position:155-471
               
               
               Cow position:chr16:14754130-14754467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 209

               
               
               Conread position:155-471
               
               
               Cow position:chr16:27723409-27723068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 326

               
               
               Conread position:155-471
               
               
               Cow position:chr16:53267902-53267578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:155-475
               
               
               Cow position:chr16:48385219-48385552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:158-466
               
               
               Cow position:chr16:15809154-15808835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:162-466
               
               
               Cow position:chr16:38621127-38620822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:162-475
               
               
               Cow position:chr16:27014073-27013748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:163-386
               
               
               Cow position:chr16:19656975-19657197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:163-412
               
               
               Cow position:chr16:50931343-50931602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:163-416
               
               
               Cow position:chr16:45731215-45731478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:163-454
               
               
               Cow position:chr16:46680983-46680702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):146, 55

               
               
               Conread position:163-461
               
               
               Cow position:chr16:18557092-18557396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:163-461
               
               
               Cow position:chr16:52790221-52789923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:163-463
               
               
               Cow position:chr16:23025505-23025208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:163-464
               
               
               Cow position:chr16:26342420-26342136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):146, 55

               
               
               Conread position:163-465
               
               
               Cow position:chr16:44535-44247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:163-465
               
               
               Cow position:chr16:51069744-51070064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:163-466
               
               
               Cow position:chr16:22808384-22808692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 174

               
               
               Conread position:163-466
               
               
               Cow position:chr16:33508230-33507927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:163-466
               
               
               Cow position:chr16:45047465-45047769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:163-466
               
               
               Cow position:chr16:48493352-48493039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-467
               
               
               Cow position:chr16:28692569-28692861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):77, 69

               
               
               Conread position:163-467
               
               
               Cow position:chr16:29655504-29655188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 192

               
               
               Conread position:163-470
               
               
               Cow position:chr16:14974378-14974676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:163-471
               
               
               Cow position:chr16:11008518-11008200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:163-472
               
               
               Cow position:chr16:50933704-50934016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:163-473
               
               
               Cow position:chr16:47519022-47518692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 199

               
               
               Conread position:163-474
               
               
               Cow position:chr16:40333145-40333474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 207

               
               
               Conread position:163-477
               
               
               Cow position:chr16:10148457-10148121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:164-454
               
               
               Cow position:chr16:51697264-51696951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 199

               
               
               Conread position:164-459
               
               
               Cow position:chr16:36120807-36121113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 189

               
               
               Conread position:164-461
               
               
               Cow position:chr16:16524200-16524492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 79

               
               
               Conread position:164-461
               
               
               Cow position:chr16:54515889-54515589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:164-471
               
               
               Cow position:chr16:8025680-8025990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:164-471
               
               
               Cow position:chr16:26372774-26373099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:164-471
               
               
               Cow position:chr16:53627264-53627572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 180

               
               
               Conread position:164-471
               
               
               Cow position:chr16:56232001-56231682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 153

               
               
               Conread position:164-475
               
               
               Cow position:chr16:6344269-6344589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:164-475
               
               
               Cow position:chr16:18692978-18693281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:164-475
               
               
               Cow position:chr16:41689861-41689547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:165-461
               
               
               Cow position:chr16:8236171-8236453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:165-466
               
               
               Cow position:chr16:689872-689571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:165-471
               
               
               Cow position:chr16:8315024-8315329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 182

               
               
               Conread position:165-471
               
               
               Cow position:chr16:21905310-21905021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:165-475
               
               
               Cow position:chr16:42340365-42340047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:166-466
               
               
               Cow position:chr16:46627679-46627974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 139

               
               
               Conread position:166-475
               
               
               Cow position:chr16:27160713-27161004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:166-475
               
               
               Cow position:chr16:36930150-36930474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:166-475
               
               
               Cow position:chr16:37062236-37062549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:167-454
               
               
               Cow position:chr16:12072802-12072511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:168-475
               
               
               Cow position:chr16:11085217-11085531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:169-461
               
               
               Cow position:chr16:23066820-23066532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 142

               
               
               Conread position:169-471
               
               
               Cow position:chr16:43661615-43661300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:170-464
               
               
               Cow position:chr16:41578384-41578088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):17, 178

               
               
               Conread position:170-477
               
               
               Cow position:chr16:7505237-7504936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:175-466
               
               
               Cow position:chr16:238419-238126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:175-466
               
               
               Cow position:chr16:56565750-56565456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:178-471
               
               
               Cow position:chr16:48494408-48494698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:180-466
               
               
               Cow position:chr16:43505656-43505938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:183-471
               
               
               Cow position:chr16:30715645-30715351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):125, 218

               
               
               Conread position:187-471
               
               
               Cow position:chr16:27261807-27262095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:191-466
               
               
               Cow position:chr16:22872237-22872507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:192-441
               
               
               Cow position:chr16:47852458-47852708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:192-474
               
               
               Cow position:chr16:21317460-21317744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 161

               
               
               Conread position:194-466
               
               
               Cow position:chr16:33790708-33790969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:199-438
               
               
               Cow position:chr16:50667417-50667173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:200-473
               
               
               Cow position:chr16:9445094-9444812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:201-461
               
               
               Cow position:chr16:29096042-29095805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:203-471
               
               
               Cow position:chr16:18402807-18402540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:205-477
               
               
               Cow position:chr16:24826192-24825920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):104, 145

               
               
               Conread position:207-465
               
               
               Cow position:chr16:42257573-42257308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:207-471
               
               
               Cow position:chr16:5725585-5725323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:209-471
               
               
               Cow position:chr16:11105669-11105408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 114

               
               
               Conread position:210-471
               
               
               Cow position:chr16:20025555-20025302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:210-471
               
               
               Cow position:chr16:26649515-26649774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:211-471
               
               
               Cow position:chr16:14758846-14758587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:212-461
               
               
               Cow position:chr16:30135786-30136029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:212-466
               
               
               Cow position:chr16:18757727-18757980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:213-408
               
               
               Cow position:chr16:56670808-56671002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 143

               
               
               Conread position:213-409
               
               
               Cow position:chr16:44428994-44428797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-413
               
               
               Cow position:chr16:3114650-3114451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:213-413
               
               
               Cow position:chr16:30358952-30359147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-419
               
               
               Cow position:chr16:44683546-44683754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 49

               
               
               Conread position:213-419
               
               
               Cow position:chr16:48545932-48545728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-420
               
               
               Cow position:chr16:19670242-19670441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-436
               
               
               Cow position:chr16:4399846-4399626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-441
               
               
               Cow position:chr16:29677523-29677745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-442
               
               
               Cow position:chr16:7429490-7429261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-442
               
               
               Cow position:chr16:18052441-18052214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr16:10032749-10032522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr16:22984864-22984640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 77

               
               
               Conread position:213-443
               
               
               Cow position:chr16:56796555-56796783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-444
               
               
               Cow position:chr16:34153460-34153686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-444
               
               
               Cow position:chr16:34753849-34754079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-448
               
               
               Cow position:chr16:10945330-10945555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:213-450
               
               
               Cow position:chr16:47855049-47854818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:213-454
               
               
               Cow position:chr16:45554554-45554314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-454
               
               
               Cow position:chr16:53830481-53830714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):207, 77

               
               
               Conread position:213-455
               
               
               Cow position:chr16:23955721-23955956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-459
               
               
               Cow position:chr16:7583508-7583264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-460
               
               
               Cow position:chr16:13698626-13698378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-460
               
               
               Cow position:chr16:23366351-23366109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr16:18353847-18354087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 94

               
               
               Conread position:213-461
               
               
               Cow position:chr16:44210446-44210700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:213-464
               
               
               Cow position:chr16:11083108-11082872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:213-464
               
               
               Cow position:chr16:22380243-22380493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:213-464
               
               
               Cow position:chr16:50282321-50282563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:213-465
               
               
               Cow position:chr16:8448544-8448783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr16:41530189-41530430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-465
               
               
               Cow position:chr16:50289261-50289011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr16:1548767-1549013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr16:4910414-4910671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr16:7550078-7549828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:213-466
               
               
               Cow position:chr16:7665748-7665495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr16:8322872-8323122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:213-466
               
               
               Cow position:chr16:10773232-10772993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr16:14568378-14568621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr16:22841949-22842199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-466
               
               
               Cow position:chr16:23472859-23472607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr16:25380384-25380636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-466
               
               
               Cow position:chr16:30036880-30037131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr16:35623139-35623381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:213-466
               
               
               Cow position:chr16:38243552-38243802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr16:42444266-42444016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr16:43276129-43275882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):211, 98

               
               
               Conread position:213-466
               
               
               Cow position:chr16:51869750-51869500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr16:52636275-52636520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr16:53086230-53086469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):96, 107

               
               
               Conread position:213-467
               
               
               Cow position:chr16:5364012-5363755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):87, 134

               
               
               Conread position:213-471
               
               
               Cow position:chr16:5257107-5256855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr16:6319314-6319053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr16:8193564-8193303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr16:14685279-14685534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:213-471
               
               
               Cow position:chr16:15824333-15824589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:213-471
               
               
               Cow position:chr16:17289058-17288796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr16:20633765-20634023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr16:22773090-22772823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:213-471
               
               
               Cow position:chr16:23564243-23563991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr16:23871539-23871793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr16:29038025-29037759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr16:33646126-33645870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr16:37452503-37452763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr16:39165350-39165099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr16:40562342-40562086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr16:42242007-42242261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr16:42733900-42734158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-471
               
               
               Cow position:chr16:43105405-43105658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-471
               
               
               Cow position:chr16:43308452-43308710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr16:52133406-52133660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-472
               
               
               Cow position:chr16:11957467-11957730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 147

               
               
               Conread position:213-472
               
               
               Cow position:chr16:15960179-15960437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-474
               
               
               Cow position:chr16:5896529-5896266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):147, 52

               
               
               Conread position:213-475
               
               
               Cow position:chr16:7499161-7498910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr16:18206070-18205811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-475
               
               
               Cow position:chr16:23681473-23681216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:213-475
               
               
               Cow position:chr16:46552905-46552660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):207, 81

               
               
               Conread position:213-477
               
               
               Cow position:chr16:42633633-42633909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 252

               
               
               Conread position:213-477
               
               
               Cow position:chr16:49169270-49169537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:214-397
               
               
               Cow position:chr16:17135834-17135657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 74

               
               
               Conread position:214-461
               
               
               Cow position:chr16:3614850-3614612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:214-471
               
               
               Cow position:chr16:3246095-3246351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:214-475
               
               
               Cow position:chr16:8933318-8933577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:214-475
               
               
               Cow position:chr16:17282768-17282513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:214-475
               
               
               Cow position:chr16:45813589-45813855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:215-387
               
               
               Cow position:chr16:55945031-55945203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 122

               
               
               Conread position:215-404
               
               
               Cow position:chr16:38091112-38091302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:215-434
               
               
               Cow position:chr16:43674983-43674766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:215-471
               
               
               Cow position:chr16:23738289-23738034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:215-471
               
               
               Cow position:chr16:38119341-38119589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-475
               
               
               Cow position:chr16:54664690-54664953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:216-464
               
               
               Cow position:chr16:2223289-2223543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:218-454
               
               
               Cow position:chr16:7152067-7152301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:218-466
               
               
               Cow position:chr16:7542402-7542143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:218-466
               
               
               Cow position:chr16:30143100-30143349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:218-471
               
               
               Cow position:chr16:9933258-9933014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:218-471
               
               
               Cow position:chr16:13689771-13689520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr16:49126081-49126330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:218-477
               
               
               Cow position:chr16:4856997-4857248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:219-399
               
               
               Cow position:chr16:9161187-9161006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-447
               
               
               Cow position:chr16:21761866-21762093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-459
               
               
               Cow position:chr16:11102717-11102957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:219-463
               
               
               Cow position:chr16:40446366-40446115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:219-466
               
               
               Cow position:chr16:4499532-4499295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:219-466
               
               
               Cow position:chr16:13611350-13611591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-471
               
               
               Cow position:chr16:4902694-4902444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:219-475
               
               
               Cow position:chr16:7076016-7075759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:220-442
               
               
               Cow position:chr16:25965603-25965387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 89

               
               
               Conread position:220-454
               
               
               Cow position:chr16:33595833-33596064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:221-406
               
               
               Cow position:chr16:9500624-9500437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-419
               
               
               Cow position:chr16:20872124-20871934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:221-439
               
               
               Cow position:chr16:33869663-33869874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-443
               
               
               Cow position:chr16:28880043-28879821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:221-443
               
               
               Cow position:chr16:53508883-53509100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-453
               
               
               Cow position:chr16:25170495-25170261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr16:8522288-8522524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:221-454
               
               
               Cow position:chr16:54734348-54734115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:221-461
               
               
               Cow position:chr16:570818-571048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr16:4971924-4972156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):203, 75

               
               
               Conread position:221-461
               
               
               Cow position:chr16:9973397-9973633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr16:25839722-25839484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr16:50688623-50688389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-463
               
               
               Cow position:chr16:35188362-35188117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:221-464
               
               
               Cow position:chr16:48398152-48398389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr16:15370787-15370540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:221-465
               
               
               Cow position:chr16:52275027-52275269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr16:12320323-12320082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr16:14106750-14106506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:221-466
               
               
               Cow position:chr16:29159222-29158990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr16:39474049-39474277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:221-466
               
               
               Cow position:chr16:41590876-41590635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-466
               
               
               Cow position:chr16:51247047-51246808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-466
               
               
               Cow position:chr16:56875562-56875789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:221-469
               
               
               Cow position:chr16:24855641-24855399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr16:14242470-14242227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr16:17143036-17142791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr16:17945623-17945377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr16:26676584-26676834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr16:31348664-31348912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr16:50521582-50521333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:221-473
               
               
               Cow position:chr16:56082263-56082510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-477
               
               
               Cow position:chr16:12360871-12361129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr16:28395979-28396251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr16:41696990-41697243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:222-448
               
               
               Cow position:chr16:53089246-53089463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:222-471
               
               
               Cow position:chr16:45457063-45456812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:225-477
               
               
               Cow position:chr16:16548717-16548459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:226-416
               
               
               Cow position:chr16:26030785-26030973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:228-454
               
               
               Cow position:chr16:13306776-13306992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:228-464
               
               
               Cow position:chr16:5836681-5836445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:228-464
               
               
               Cow position:chr16:48006397-48006625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:228-466
               
               
               Cow position:chr16:46433229-46433467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:228-471
               
               
               Cow position:chr16:16402228-16402468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr16:33704901-33704662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:228-471
               
               
               Cow position:chr16:45139762-45139527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:228-475
               
               
               Cow position:chr16:4698892-4699132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:229-466
               
               
               Cow position:chr16:49229673-49229911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:229-467
               
               
               Cow position:chr16:5415666-5415904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:229-471
               
               
               Cow position:chr16:17627025-17626785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:230-475
               
               
               Cow position:chr16:13969276-13969529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:230-475
               
               
               Cow position:chr16:47662822-47662563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:231-419
               
               
               Cow position:chr16:42176739-42176551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:232-454
               
               
               Cow position:chr16:8958965-8959188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 6

               
               
               Conread position:233-471
               
               
               Cow position:chr16:48340603-48340840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:236-454
               
               
               Cow position:chr16:33267801-33267587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:237-466
               
               
               Cow position:chr16:28833930-28833699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:237-471
               
               
               Cow position:chr16:5727020-5726777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:237-471
               
               
               Cow position:chr16:8065801-8066030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:237-471
               
               
               Cow position:chr16:17745923-17745690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:237-475
               
               
               Cow position:chr16:49336310-49336077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:238-420
               
               
               Cow position:chr16:34220272-34220090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:238-441
               
               
               Cow position:chr16:9905176-9904975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:238-466
               
               
               Cow position:chr16:10303665-10303888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:238-466
               
               
               Cow position:chr16:10592517-10592295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:238-466
               
               
               Cow position:chr16:11806757-11806536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:238-467
               
               
               Cow position:chr16:12633970-12633745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:238-471
               
               
               Cow position:chr16:820336-820103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr16:7442016-7442247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:238-471
               
               
               Cow position:chr16:9497181-9497423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:238-471
               
               
               Cow position:chr16:11774962-11775195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:238-471
               
               
               Cow position:chr16:16096822-16096591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):186, 69

               
               
               Conread position:238-471
               
               
               Cow position:chr16:16265017-16265244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:238-471
               
               
               Cow position:chr16:17982057-17982287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:238-471
               
               
               Cow position:chr16:29557545-29557772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:238-471
               
               
               Cow position:chr16:32327744-32327507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:238-471
               
               
               Cow position:chr16:35758288-35758067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr16:52889325-52889553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:238-475
               
               
               Cow position:chr16:42752936-42752706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:238-475
               
               
               Cow position:chr16:48145317-48145556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:238-477
               
               
               Cow position:chr16:12060502-12060261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:238-477
               
               
               Cow position:chr16:39646630-39646398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:238-477
               
               
               Cow position:chr16:43800830-43801072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:239-418
               
               
               Cow position:chr16:18141242-18141420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:239-442
               
               
               Cow position:chr16:48086782-48086984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:239-475
               
               
               Cow position:chr16:36203533-36203764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 168

               
               
               Conread position:240-460
               
               
               Cow position:chr16:4059440-4059221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:240-465
               
               
               Cow position:chr16:13195256-13195480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:240-471
               
               
               Cow position:chr16:38905150-38905374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:240-471
               
               
               Cow position:chr16:54579250-54579025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 56

               
               
               Conread position:243-442
               
               
               Cow position:chr16:17903564-17903766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:243-466
               
               
               Cow position:chr16:591730-591952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:243-466
               
               
               Cow position:chr16:32969999-32970218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:243-471
               
               
               Cow position:chr16:25387054-25386836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:243-471
               
               
               Cow position:chr16:33226458-33226683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:243-477
               
               
               Cow position:chr16:7011150-7010914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:244-477
               
               
               Cow position:chr16:4626311-4626543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:245-460
               
               
               Cow position:chr16:38191554-38191338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:247-443
               
               
               Cow position:chr16:20476608-20476420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:247-448
               
               
               Cow position:chr16:13483499-13483696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:247-464
               
               
               Cow position:chr16:50453835-50453624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:247-465
               
               
               Cow position:chr16:45610062-45609852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:247-466
               
               
               Cow position:chr16:16552638-16552422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:247-466
               
               
               Cow position:chr16:51112803-51113017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:247-466
               
               
               Cow position:chr16:54084113-54083895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-466
               
               
               Cow position:chr16:54225442-54225646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:247-471
               
               
               Cow position:chr16:53891709-53891926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:248-459
               
               
               Cow position:chr16:53553643-53553846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-464
               
               
               Cow position:chr16:37117150-37116933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:248-471
               
               
               Cow position:chr16:3821604-3821392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 71

               
               
               Conread position:248-471
               
               
               Cow position:chr16:7077667-7077888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:249-471
               
               
               Cow position:chr16:9136243-9136031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:249-475
               
               
               Cow position:chr16:42092314-42092532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:250-419
               
               
               Cow position:chr16:30186719-30186551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-460
               
               
               Cow position:chr16:19047360-19047572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-470
               
               
               Cow position:chr16:3634190-3633969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:250-471
               
               
               Cow position:chr16:31269214-31268996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:250-471
               
               
               Cow position:chr16:35343399-35343617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:250-477
               
               
               Cow position:chr16:594150-594381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:250-477
               
               
               Cow position:chr16:44744059-44744290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:251-443
               
               
               Cow position:chr16:33130534-33130340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:251-454
               
               
               Cow position:chr16:46752198-46752399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:251-473
               
               
               Cow position:chr16:29766398-29766189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):173, 50

               
               
               Conread position:254-471
               
               
               Cow position:chr16:7456392-7456605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:255-445
               
               
               Cow position:chr16:23729855-23730046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:255-471
               
               
               Cow position:chr16:8076433-8076653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:255-471
               
               
               Cow position:chr16:21369553-21369338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:255-475
               
               
               Cow position:chr16:22860700-22860909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:256-471
               
               
               Cow position:chr16:13232881-13233093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:258-474
               
               
               Cow position:chr16:24747352-24747149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:258-475
               
               
               Cow position:chr16:17606364-17606142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:258-477
               
               
               Cow position:chr16:4979868-4979655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:259-453
               
               
               Cow position:chr16:27020136-27019946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:259-455
               
               
               Cow position:chr16:13578796-13578990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:259-460
               
               
               Cow position:chr16:53048617-53048421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:259-471
               
               
               Cow position:chr16:37380335-37380122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-471
               
               
               Cow position:chr16:49125468-49125673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:259-475
               
               
               Cow position:chr16:4981312-4981531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):50, 84

               
               
               Conread position:264-466
               
               
               Cow position:chr16:12274129-12273928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:264-475
               
               
               Cow position:chr16:10650828-10651044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:265-461
               
               
               Cow position:chr16:39238005-39237812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:265-464
               
               
               Cow position:chr16:14699977-14699781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:266-471
               
               
               Cow position:chr16:24672300-24672502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:268-473
               
               
               Cow position:chr16:30515533-30515739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:268-475
               
               
               Cow position:chr16:45535231-45535028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:273-454
               
               
               Cow position:chr16:4145114-4144935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:278-466
               
               
               Cow position:chr16:44676916-44676733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):146, 32

               
               
               Conread position:283-471
               
               
               Cow position:chr16:41608656-41608466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:287-471
               
               
               Cow position:chr16:4372456-4372639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:290-471
               
               
               Cow position:chr16:7496231-7496053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:295-477
               
               
               Cow position:chr16:10462502-10462673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 22

               
               
               Conread position:297-465
               
               
               Cow position:chr16:56912686-56912856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:304-471
               
               
               Cow position:chr16:39417100-39417262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:305-466
               
               
               Cow position:chr16:44973512-44973355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:310-465
               
               
               Cow position:chr16:47620392-47620242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:310-466
               
               
               Cow position:chr16:4103151-4103298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:310-471
               
               
               Cow position:chr16:42253547-42253713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:310-477
               
               
               Cow position:chr16:4503293-4503128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:310-477
               
               
               Cow position:chr16:16280437-16280596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:315-460
               
               
               Cow position:chr16:26068938-26068796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:315-471
               
               
               Cow position:chr16:23810917-23810768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:319-465
               
               
               Cow position:chr16:9790629-9790770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:319-475
               
               
               Cow position:chr16:14028627-14028775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:320-471
               
               
               Cow position:chr16:25287690-25287832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:323-477
               
               
               Cow position:chr16:27005207-27005046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:337-462
               
               
               Cow position:chr16:26501145-26501021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:338-465
               
               
               Cow position:chr16:7082742-7082874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:347-471
               
               
               Cow position:chr16:31159591-31159718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:350-475
               
               
               Cow position:chr16:49141588-49141713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:357-465
               
               
               Cow position:chr16:12106852-12106743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:358-471
               
               
               Cow position:chr16:30209724-30209610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:139-412
               
               
               Cow position:chr17:10886177-10886451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:141-465
               
               
               Cow position:chr17:5143920-5144264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):69, 215

               
               
               Conread position:144-335
               
               
               Cow position:chr17:10052078-10052268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:144-335
               
               
               Cow position:chr17:12342253-12342455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:150-471
               
               
               Cow position:chr17:4968328-4968010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:155-369
               
               
               Cow position:chr17:25169288-25169075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 183

               
               
               Conread position:155-466
               
               
               Cow position:chr17:9565502-9565210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):270, 56

               
               
               Conread position:155-466
               
               
               Cow position:chr17:20081600-20081886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):154, 13

               
               
               Conread position:157-391
               
               
               Cow position:chr17:12091597-12091848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 194

               
               
               Conread position:157-454
               
               
               Cow position:chr17:36216970-36217265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:158-473
               
               
               Cow position:chr17:11101583-11101907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):61, 137

               
               
               Conread position:162-416
               
               
               Cow position:chr17:2271208-2270948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:162-464
               
               
               Cow position:chr17:37778423-37778715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:162-465
               
               
               Cow position:chr17:5224608-5224299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:162-469
               
               
               Cow position:chr17:3354100-3353779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:163-318
               
               
               Cow position:chr17:32950614-32950451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:163-351
               
               
               Cow position:chr17:10769299-10769499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-394
               
               
               Cow position:chr17:7567197-7567421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):146, 77

               
               
               Conread position:163-409
               
               
               Cow position:chr17:3619876-3620125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-419
               
               
               Cow position:chr17:3872739-3872487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:163-428
               
               
               Cow position:chr17:7205630-7205350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:163-443
               
               
               Cow position:chr17:32457360-32457646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:163-443
               
               
               Cow position:chr17:37138964-37138686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:163-444
               
               
               Cow position:chr17:1469596-1469299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):56, 194

               
               
               Conread position:163-444
               
               
               Cow position:chr17:40406653-40406366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 185

               
               
               Conread position:163-459
               
               
               Cow position:chr17:23803666-23803366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:163-461
               
               
               Cow position:chr17:8279504-8279803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:163-464
               
               
               Cow position:chr17:27819502-27819209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:163-465
               
               
               Cow position:chr17:11344416-11344119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:163-466
               
               
               Cow position:chr17:27429786-27429483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:163-467
               
               
               Cow position:chr17:38362783-38363086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:163-471
               
               
               Cow position:chr17:1040958-1040642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:163-471
               
               
               Cow position:chr17:11296869-11296535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 318

               
               
               Conread position:163-471
               
               
               Cow position:chr17:38647245-38646956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:163-471
               
               
               Cow position:chr17:41289814-41290124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:163-475
               
               
               Cow position:chr17:7654259-7654565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:163-475
               
               
               Cow position:chr17:21312627-21312918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):261, 62

               
               
               Conread position:164-423
               
               
               Cow position:chr17:13715825-13716095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:164-453
               
               
               Cow position:chr17:26162216-26162514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:164-453
               
               
               Cow position:chr17:33275530-33275834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:164-454
               
               
               Cow position:chr17:7760280-7760552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):145, 48

               
               
               Conread position:164-465
               
               
               Cow position:chr17:33998851-33999142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:164-471
               
               
               Cow position:chr17:30539070-30539355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 64

               
               
               Conread position:164-475
               
               
               Cow position:chr17:2034728-2034425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 69

               
               
               Conread position:164-476
               
               
               Cow position:chr17:24880950-24880634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):55, 151

               
               
               Conread position:166-466
               
               
               Cow position:chr17:24580087-24580395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:167-475
               
               
               Cow position:chr17:35212563-35212253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:168-465
               
               
               Cow position:chr17:35387795-35388111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:173-436
               
               
               Cow position:chr17:29898819-29898562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:174-471
               
               
               Cow position:chr17:13143502-13143794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:183-475
               
               
               Cow position:chr17:924073-923765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 173

               
               
               Conread position:185-454
               
               
               Cow position:chr17:23516765-23517030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:187-465
               
               
               Cow position:chr17:19891811-19891522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:187-466
               
               
               Cow position:chr17:12768620-12768879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:191-467
               
               
               Cow position:chr17:5688191-5688457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:192-466
               
               
               Cow position:chr17:13922662-13922380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:198-466
               
               
               Cow position:chr17:41891887-41892163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:207-445
               
               
               Cow position:chr17:9824828-9824590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:209-454
               
               
               Cow position:chr17:25502263-25502022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:210-426
               
               
               Cow position:chr17:26757293-26757521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:211-457
               
               
               Cow position:chr17:39715319-39715067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:212-471
               
               
               Cow position:chr17:5514917-5514655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:212-475
               
               
               Cow position:chr17:18860574-18860832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:213-401
               
               
               Cow position:chr17:28814342-28814533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 150

               
               
               Conread position:213-409
               
               
               Cow position:chr17:26789570-26789378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-413
               
               
               Cow position:chr17:37816044-37816236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:213-419
               
               
               Cow position:chr17:36814512-36814308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-421
               
               
               Cow position:chr17:22051439-22051646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-431
               
               
               Cow position:chr17:16616964-16616754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:213-434
               
               
               Cow position:chr17:14848397-14848605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:213-440
               
               
               Cow position:chr17:15684661-15684439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:213-440
               
               
               Cow position:chr17:21806301-21806523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-441
               
               
               Cow position:chr17:36275484-36275263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-442
               
               
               Cow position:chr17:27795804-27795570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr17:2275621-2275398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-443
               
               
               Cow position:chr17:21495522-21495300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:213-443
               
               
               Cow position:chr17:25189436-25189211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-443
               
               
               Cow position:chr17:31856822-31856594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:213-444
               
               
               Cow position:chr17:14025759-14025990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr17:21972979-21973215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-448
               
               
               Cow position:chr17:38263339-38263568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-454
               
               
               Cow position:chr17:21325483-21325245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-454
               
               
               Cow position:chr17:27202897-27203132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:213-459
               
               
               Cow position:chr17:6848945-6848714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-459
               
               
               Cow position:chr17:21489474-21489716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-461
               
               
               Cow position:chr17:21922483-21922718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-461
               
               
               Cow position:chr17:25342590-25342835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr17:40771981-40771741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):211, 40

               
               
               Conread position:213-464
               
               
               Cow position:chr17:9911908-9911668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-464
               
               
               Cow position:chr17:11664431-11664685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:213-465
               
               
               Cow position:chr17:7803024-7803272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr17:20780666-20780413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:213-465
               
               
               Cow position:chr17:21680930-21680674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:213-465
               
               
               Cow position:chr17:30718267-30718517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:213-465
               
               
               Cow position:chr17:38990257-38990005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:213-466
               
               
               Cow position:chr17:908891-908647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:213-466
               
               
               Cow position:chr17:1562636-1562870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:213-466
               
               
               Cow position:chr17:8544455-8544207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:213-466
               
               
               Cow position:chr17:10561785-10561531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr17:11215081-11215328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):91, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr17:14652629-14652879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:213-466
               
               
               Cow position:chr17:27048306-27048060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr17:41030088-41029854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):211, 15

               
               
               Conread position:213-467
               
               
               Cow position:chr17:4611912-4612177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-469
               
               
               Cow position:chr17:25128202-25128450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr17:979016-979260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):211, 86

               
               
               Conread position:213-471
               
               
               Cow position:chr17:6329266-6329008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr17:8079463-8079213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr17:11280949-11281211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 150

               
               
               Conread position:213-471
               
               
               Cow position:chr17:11831964-11832223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr17:12219788-12220040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr17:12536314-12536572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr17:12591325-12591063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 101

               
               
               Conread position:213-471
               
               
               Cow position:chr17:14003976-14003714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr17:17410444-17410185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr17:20874547-20874286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr17:20932482-20932225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr17:24077552-24077298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:213-471
               
               
               Cow position:chr17:31037226-31037484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr17:32349218-32348970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr17:32989627-32989378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr17:32993473-32993722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr17:36791277-36791031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:213-471
               
               
               Cow position:chr17:37699199-37699460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:213-473
               
               
               Cow position:chr17:5900520-5900260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr17:1634341-1634600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:213-475
               
               
               Cow position:chr17:9746663-9746405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr17:20848673-20848413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr17:32138273-32138527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr17:34751255-34751513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr17:37479851-37480102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):211, 92

               
               
               Conread position:213-476
               
               
               Cow position:chr17:18201908-18201650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:213-477
               
               
               Cow position:chr17:5422918-5423180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-477
               
               
               Cow position:chr17:9056547-9056813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr17:18495369-18495630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-477
               
               
               Cow position:chr17:24587775-24587511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 96

               
               
               Conread position:213-477
               
               
               Cow position:chr17:25097605-25097352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):212, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr17:27058406-27058666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:213-477
               
               
               Cow position:chr17:30359609-30359360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):212, 77

               
               
               Conread position:214-415
               
               
               Cow position:chr17:9940845-9940634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 132

               
               
               Conread position:214-464
               
               
               Cow position:chr17:20990040-20990291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:214-471
               
               
               Cow position:chr17:21738724-21738984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:214-471
               
               
               Cow position:chr17:33657919-33658174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:215-411
               
               
               Cow position:chr17:20810341-20810533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:215-420
               
               
               Cow position:chr17:4213891-4213693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:215-443
               
               
               Cow position:chr17:21755285-21755506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:215-444
               
               
               Cow position:chr17:1466268-1466507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 135

               
               
               Conread position:215-447
               
               
               Cow position:chr17:38833192-38832962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):94, 141

               
               
               Conread position:216-466
               
               
               Cow position:chr17:32278759-32279004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:216-466
               
               
               Cow position:chr17:32280813-32280568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:216-471
               
               
               Cow position:chr17:24559438-24559189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 114

               
               
               Conread position:216-475
               
               
               Cow position:chr17:11618731-11618471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:218-416
               
               
               Cow position:chr17:25126496-25126303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:218-433
               
               
               Cow position:chr17:40639092-40638883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:218-466
               
               
               Cow position:chr17:1410091-1410338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:218-466
               
               
               Cow position:chr17:24883425-24883665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:218-466
               
               
               Cow position:chr17:25616395-25616160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:218-469
               
               
               Cow position:chr17:11215747-11215993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:218-471
               
               
               Cow position:chr17:7698192-7697953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:219-419
               
               
               Cow position:chr17:9770646-9770459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:219-471
               
               
               Cow position:chr17:15340608-15340856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr17:21003686-21003932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:220-461
               
               
               Cow position:chr17:8836799-8837043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:221-420
               
               
               Cow position:chr17:20335802-20335612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:221-433
               
               
               Cow position:chr17:25032340-25032550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-435
               
               
               Cow position:chr17:36864772-36864562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-441
               
               
               Cow position:chr17:2662566-2662349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr17:29026214-29025991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:221-454
               
               
               Cow position:chr17:10431832-10432064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr17:1114030-1113788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:221-465
               
               
               Cow position:chr17:25513981-25514221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr17:39857538-39857295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 124

               
               
               Conread position:221-466
               
               
               Cow position:chr17:267452-267687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:221-466
               
               
               Cow position:chr17:16371398-16371156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr17:25917048-25916797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:221-466
               
               
               Cow position:chr17:32273545-32273785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr17:6423905-6423657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:221-471
               
               
               Cow position:chr17:9854118-9853886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr17:11397807-11397566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr17:12289267-12289519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr17:20992900-20993144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr17:22032553-22032794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr17:22564337-22564077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:221-471
               
               
               Cow position:chr17:25815745-25815500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:221-471
               
               
               Cow position:chr17:25901342-25901093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr17:32027311-32027562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:221-475
               
               
               Cow position:chr17:9117786-9117534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):141, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr17:13243908-13244148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:222-471
               
               
               Cow position:chr17:20022372-20022621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:228-392
               
               
               Cow position:chr17:7577733-7577565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 129

               
               
               Conread position:228-419
               
               
               Cow position:chr17:7590327-7590509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:228-461
               
               
               Cow position:chr17:10458796-10459031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:228-461
               
               
               Cow position:chr17:20839430-20839655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:228-464
               
               
               Cow position:chr17:3503717-3503485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):93, 113

               
               
               Conread position:228-466
               
               
               Cow position:chr17:8690316-8690541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:229-419
               
               
               Cow position:chr17:16158626-16158439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:229-471
               
               
               Cow position:chr17:6566616-6566363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:230-419
               
               
               Cow position:chr17:11839856-11839664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-475
               
               
               Cow position:chr17:484728-484488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:231-388
               
               
               Cow position:chr17:7851220-7851066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:231-432
               
               
               Cow position:chr17:4683482-4683281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 100

               
               
               Conread position:231-465
               
               
               Cow position:chr17:17222473-17222246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:237-466
               
               
               Cow position:chr17:1035470-1035699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:238-423
               
               
               Cow position:chr17:2810758-2810570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:238-443
               
               
               Cow position:chr17:26231080-26230874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-448
               
               
               Cow position:chr17:11368724-11368932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:238-453
               
               
               Cow position:chr17:5349998-5350213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:238-461
               
               
               Cow position:chr17:40288874-40289092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:238-465
               
               
               Cow position:chr17:18720321-18720551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-466
               
               
               Cow position:chr17:37414775-37414995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):170, 58

               
               
               Conread position:238-470
               
               
               Cow position:chr17:21292918-21293147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:238-471
               
               
               Cow position:chr17:3782169-3781941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:238-474
               
               
               Cow position:chr17:31480912-31481148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:238-475
               
               
               Cow position:chr17:11156368-11156602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:238-475
               
               
               Cow position:chr17:30665398-30665163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:238-477
               
               
               Cow position:chr17:20884649-20884412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-477
               
               
               Cow position:chr17:34948760-34948528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:239-416
               
               
               Cow position:chr17:4891238-4891409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:239-460
               
               
               Cow position:chr17:14033517-14033733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:239-460
               
               
               Cow position:chr17:21959563-21959780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:239-464
               
               
               Cow position:chr17:25181023-25181242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:239-465
               
               
               Cow position:chr17:17060557-17060777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:240-418
               
               
               Cow position:chr17:22246113-22245941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:240-454
               
               
               Cow position:chr17:4786372-4786583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:240-454
               
               
               Cow position:chr17:23798405-23798191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:240-471
               
               
               Cow position:chr17:31230999-31231215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:240-473
               
               
               Cow position:chr17:20126721-20126506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:241-461
               
               
               Cow position:chr17:32651738-32651522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:243-465
               
               
               Cow position:chr17:18108966-18109184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:243-466
               
               
               Cow position:chr17:12108925-12108706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:243-466
               
               
               Cow position:chr17:36330837-36331064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:246-471
               
               
               Cow position:chr17:34596058-34595840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-438
               
               
               Cow position:chr17:21478805-21478994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-465
               
               
               Cow position:chr17:14060657-14060874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:247-471
               
               
               Cow position:chr17:14762005-14762223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:247-471
               
               
               Cow position:chr17:15664794-15664564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:247-471
               
               
               Cow position:chr17:28540145-28539925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:247-475
               
               
               Cow position:chr17:11171909-11171686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:247-475
               
               
               Cow position:chr17:40741769-40741538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:248-460
               
               
               Cow position:chr17:24149300-24149088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-477
               
               
               Cow position:chr17:25796221-25796451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:249-464
               
               
               Cow position:chr17:21917758-21917973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:250-443
               
               
               Cow position:chr17:8597996-8598182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):174, 57

               
               
               Conread position:250-449
               
               
               Cow position:chr17:38615074-38614873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr17:24490655-24490432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 219

               
               
               Conread position:250-466
               
               
               Cow position:chr17:7137093-7136883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-471
               
               
               Cow position:chr17:33410895-33411126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:250-472
               
               
               Cow position:chr17:11277914-11278138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:250-476
               
               
               Cow position:chr17:26000231-26000008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:250-477
               
               
               Cow position:chr17:34078997-34079215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:254-466
               
               
               Cow position:chr17:21628588-21628378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):67, 78

               
               
               Conread position:254-471
               
               
               Cow position:chr17:7132329-7132555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 211

               
               
               Conread position:254-471
               
               
               Cow position:chr17:7142971-7142760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:259-426
               
               
               Cow position:chr17:26513294-26513127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:259-471
               
               
               Cow position:chr17:18490645-18490431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:259-475
               
               
               Cow position:chr17:18146290-18146073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:261-471
               
               
               Cow position:chr17:34316614-34316809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:264-471
               
               
               Cow position:chr17:21335592-21335798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:266-475
               
               
               Cow position:chr17:39412404-39412607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):154, 10

               
               
               Conread position:281-471
               
               
               Cow position:chr17:12059010-12059198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:282-475
               
               
               Cow position:chr17:15333628-15333820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:285-470
               
               
               Cow position:chr17:1526275-1526457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:287-475
               
               
               Cow position:chr17:17266814-17267002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:292-443
               
               
               Cow position:chr17:1353467-1353322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:292-471
               
               
               Cow position:chr17:34207745-34207922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:293-466
               
               
               Cow position:chr17:24550248-24550075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:294-475
               
               
               Cow position:chr17:24761158-24761335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:297-471
               
               
               Cow position:chr17:3471486-3471316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:297-477
               
               
               Cow position:chr17:15067564-15067737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:306-466
               
               
               Cow position:chr17:33926068-33926221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:308-454
               
               
               Cow position:chr17:27765328-27765182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:308-471
               
               
               Cow position:chr17:25122353-25122512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:309-471
               
               
               Cow position:chr17:1295517-1295675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:310-465
               
               
               Cow position:chr17:20306101-20305950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr17:30734243-30734396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:313-475
               
               
               Cow position:chr17:2839959-2839802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:315-464
               
               
               Cow position:chr17:11921228-11921379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:321-467
               
               
               Cow position:chr17:42347184-42347324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:345-475
               
               
               Cow position:chr17:4436208-4436344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:348-465
               
               
               Cow position:chr17:242658-242538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:349-471
               
               
               Cow position:chr17:11056352-11056475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:349-471
               
               
               Cow position:chr17:14883064-14883188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:357-466
               
               
               Cow position:chr17:9936029-9936136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:357-475
               
               
               Cow position:chr17:4606968-4606853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:120-465
               
               
               Cow position:chr18:33300085-33299731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:133-474
               
               
               Cow position:chr18:25970475-25970814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:135-319
               
               
               Cow position:chr18:52758188-52757989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:146-475
               
               
               Cow position:chr18:329137-329460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):158, 71

               
               
               Conread position:147-443
               
               
               Cow position:chr18:21706030-21706329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:154-475
               
               
               Cow position:chr18:42061222-42060893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 196

               
               
               Conread position:155-368
               
               
               Cow position:chr18:5647972-5647736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 206

               
               
               Conread position:158-454
               
               
               Cow position:chr18:9155032-9154723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 196

               
               
               Conread position:158-454
               
               
               Cow position:chr18:47812600-47812306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:162-465
               
               
               Cow position:chr18:50700823-50700499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 315

               
               
               Conread position:162-471
               
               
               Cow position:chr18:50082124-50082427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:163-319
               
               
               Cow position:chr18:11167256-11167092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:163-319
               
               
               Cow position:chr18:48036955-48036789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:163-341
               
               
               Cow position:chr18:6075252-6075450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:163-461
               
               
               Cow position:chr18:51298617-51298310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:163-464
               
               
               Cow position:chr18:30586080-30586390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:163-465
               
               
               Cow position:chr18:5711520-5711839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:163-466
               
               
               Cow position:chr18:5072261-5072585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):56, 223

               
               
               Conread position:163-466
               
               
               Cow position:chr18:45961135-45961437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:163-469
               
               
               Cow position:chr18:16841914-16842241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 197

               
               
               Conread position:163-471
               
               
               Cow position:chr18:47525548-47525222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:163-474
               
               
               Cow position:chr18:3166354-3166671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):60, 157

               
               
               Conread position:163-474
               
               
               Cow position:chr18:29796292-29796610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:163-475
               
               
               Cow position:chr18:51405761-51406094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr18:55589366-55589665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:163-476
               
               
               Cow position:chr18:31586238-31586548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:163-477
               
               
               Cow position:chr18:13360186-13359880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:164-459
               
               
               Cow position:chr18:50205642-50205957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):54, 194

               
               
               Conread position:164-460
               
               
               Cow position:chr18:19364069-19363765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 84

               
               
               Conread position:164-464
               
               
               Cow position:chr18:20126447-20126135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:164-466
               
               
               Cow position:chr18:20126971-20127275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:164-471
               
               
               Cow position:chr18:49100230-49100547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:165-385
               
               
               Cow position:chr18:20317909-20318135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:165-466
               
               
               Cow position:chr18:19849617-19849928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):54, 159

               
               
               Conread position:165-469
               
               
               Cow position:chr18:4601891-4602185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:166-436
               
               
               Cow position:chr18:14048817-14048566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:166-473
               
               
               Cow position:chr18:19646310-19645998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 177

               
               
               Conread position:166-475
               
               
               Cow position:chr18:248680-248989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 164

               
               
               Conread position:166-477
               
               
               Cow position:chr18:4666101-4666397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):254, 36

               
               
               Conread position:167-316
               
               
               Cow position:chr18:28297731-28297889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 150

               
               
               Conread position:168-346
               
               
               Cow position:chr18:26842965-26843154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 178

               
               
               Conread position:169-474
               
               
               Cow position:chr18:40202679-40202984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:170-471
               
               
               Cow position:chr18:4648629-4648921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 105

               
               
               Conread position:173-419
               
               
               Cow position:chr18:35360085-35359845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:173-465
               
               
               Cow position:chr18:22411484-22411787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:173-470
               
               
               Cow position:chr18:24855716-24856021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 174

               
               
               Conread position:187-393
               
               
               Cow position:chr18:15689400-15689185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 167

               
               
               Conread position:188-461
               
               
               Cow position:chr18:34021496-34021223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:192-457
               
               
               Cow position:chr18:36264674-36264931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 128

               
               
               Conread position:201-470
               
               
               Cow position:chr18:1495403-1495129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:206-454
               
               
               Cow position:chr18:51515177-51515428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):103, 236

               
               
               Conread position:208-397
               
               
               Cow position:chr18:4673386-4673202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:208-466
               
               
               Cow position:chr18:56190880-56191144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:209-471
               
               
               Cow position:chr18:21102695-21102951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):215, 96

               
               
               Conread position:210-454
               
               
               Cow position:chr18:46048832-46048598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):100, 113

               
               
               Conread position:212-445
               
               
               Cow position:chr18:29474821-29474588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-466
               
               
               Cow position:chr18:31672435-31672686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:213-385
               
               
               Cow position:chr18:56301969-56301798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:213-399
               
               
               Cow position:chr18:24508154-24508344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 144

               
               
               Conread position:213-403
               
               
               Cow position:chr18:53642673-53642862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-419
               
               
               Cow position:chr18:19883610-19883404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:213-435
               
               
               Cow position:chr18:4203853-4204063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:213-435
               
               
               Cow position:chr18:48242269-48242047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:213-435
               
               
               Cow position:chr18:51655965-51656186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-438
               
               
               Cow position:chr18:23162963-23162747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-440
               
               
               Cow position:chr18:49038539-49038314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:213-443
               
               
               Cow position:chr18:5632345-5632115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr18:16997331-16997102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr18:52634993-52635229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr18:12273735-12273502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-449
               
               
               Cow position:chr18:52855132-52854893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr18:4556092-4556330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr18:48713628-48713388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:213-454
               
               
               Cow position:chr18:51850487-51850721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-455
               
               
               Cow position:chr18:35874155-35873912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-459
               
               
               Cow position:chr18:247618-247847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-460
               
               
               Cow position:chr18:11377441-11377200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:213-461
               
               
               Cow position:chr18:3158518-3158770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-461
               
               
               Cow position:chr18:32883378-32883139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:213-461
               
               
               Cow position:chr18:43950904-43950656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr18:56171937-56172184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-463
               
               
               Cow position:chr18:47835901-47835657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-464
               
               
               Cow position:chr18:10656516-10656275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:213-464
               
               
               Cow position:chr18:25647171-25647422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr18:3044520-3044263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:213-465
               
               
               Cow position:chr18:7359822-7359568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr18:22214565-22214310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 151

               
               
               Conread position:213-465
               
               
               Cow position:chr18:56159538-56159289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr18:2270440-2270672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr18:4495809-4496060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr18:18918883-18919131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:213-466
               
               
               Cow position:chr18:19193288-19193538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-466
               
               
               Cow position:chr18:21266584-21266338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:213-466
               
               
               Cow position:chr18:27109215-27109469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-466
               
               
               Cow position:chr18:39623877-39623626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr18:51392566-51392814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):211, 94

               
               
               Conread position:213-466
               
               
               Cow position:chr18:55806557-55806806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr18:50974216-50974469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-469
               
               
               Cow position:chr18:10322883-10322629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-469
               
               
               Cow position:chr18:51676014-51676271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:213-470
               
               
               Cow position:chr18:51643289-51643546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:213-471
               
               
               Cow position:chr18:5766490-5766235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr18:7109205-7108949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr18:17005338-17005077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:213-471
               
               
               Cow position:chr18:19273019-19273275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr18:21195258-21195515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 136

               
               
               Conread position:213-471
               
               
               Cow position:chr18:22120808-22121058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr18:23821755-23821994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr18:36459008-36458754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:213-471
               
               
               Cow position:chr18:37023473-37023730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr18:38687157-38686917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr18:39434901-39434650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:213-471
               
               
               Cow position:chr18:39875183-39875436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:213-471
               
               
               Cow position:chr18:42479509-42479765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr18:43555447-43555702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr18:48828698-48828959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr18:51691385-51691641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:213-475
               
               
               Cow position:chr18:7956225-7955959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr18:11867417-11867157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:213-475
               
               
               Cow position:chr18:30341107-30341362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:213-475
               
               
               Cow position:chr18:33157892-33157635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:213-475
               
               
               Cow position:chr18:44262707-44262440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:213-477
               
               
               Cow position:chr18:12023561-12023819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:213-477
               
               
               Cow position:chr18:19896374-19896640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr18:33896341-33896611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 156

               
               
               Conread position:213-477
               
               
               Cow position:chr18:48452148-48451868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:214-466
               
               
               Cow position:chr18:2592092-2592341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:214-466
               
               
               Cow position:chr18:42747664-42747421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:214-471
               
               
               Cow position:chr18:33008142-33007883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:214-471
               
               
               Cow position:chr18:44801813-44802065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:214-474
               
               
               Cow position:chr18:55788920-55789172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:215-399
               
               
               Cow position:chr18:28930561-28930745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:215-442
               
               
               Cow position:chr18:5078699-5078925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:215-471
               
               
               Cow position:chr18:11322671-11322419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:215-477
               
               
               Cow position:chr18:56181381-56181643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:217-466
               
               
               Cow position:chr18:4182116-4182360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:218-459
               
               
               Cow position:chr18:56166052-56165823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:218-465
               
               
               Cow position:chr18:9974255-9974495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:218-465
               
               
               Cow position:chr18:18369288-18369534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:219-461
               
               
               Cow position:chr18:3209803-3209547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 226

               
               
               Conread position:219-470
               
               
               Cow position:chr18:8171015-8171261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr18:13507669-13507916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:219-477
               
               
               Cow position:chr18:43020334-43020574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:220-470
               
               
               Cow position:chr18:20174059-20174309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:221-337
               
               
               Cow position:chr18:50359400-50359282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-411
               
               
               Cow position:chr18:12584771-12584961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:221-433
               
               
               Cow position:chr18:42751534-42751752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:221-457
               
               
               Cow position:chr18:55140491-55140722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:221-464
               
               
               Cow position:chr18:28657843-28658079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr18:25282486-25282725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr18:25984498-25984742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:221-471
               
               
               Cow position:chr18:2863922-2864176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:221-471
               
               
               Cow position:chr18:14586402-14586649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr18:28101700-28101454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr18:36746191-36746432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr18:45104370-45104618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr18:47512075-47511821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:221-471
               
               
               Cow position:chr18:51712638-51712882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:221-475
               
               
               Cow position:chr18:29958092-29958339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:221-477
               
               
               Cow position:chr18:1954521-1954774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr18:33407687-33407426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:222-460
               
               
               Cow position:chr18:39022326-39022095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:222-471
               
               
               Cow position:chr18:6609790-6610037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:222-471
               
               
               Cow position:chr18:40759278-40759038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:223-474
               
               
               Cow position:chr18:9066769-9066518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:228-471
               
               
               Cow position:chr18:23766347-23766590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:228-477
               
               
               Cow position:chr18:23476625-23476864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:229-473
               
               
               Cow position:chr18:55397370-55397120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):27, 68

               
               
               Conread position:230-452
               
               
               Cow position:chr18:16044091-16044311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:230-466
               
               
               Cow position:chr18:50382308-50382086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-469
               
               
               Cow position:chr18:20270954-20271195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:233-471
               
               
               Cow position:chr18:22143464-22143713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:236-475
               
               
               Cow position:chr18:29371921-29371682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:237-477
               
               
               Cow position:chr18:36183853-36184085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:238-406
               
               
               Cow position:chr18:24759604-24759768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-463
               
               
               Cow position:chr18:31125176-31125390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:238-466
               
               
               Cow position:chr18:21176239-21176014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:238-466
               
               
               Cow position:chr18:22274789-22275008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:238-466
               
               
               Cow position:chr18:33504206-33504432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:238-466
               
               
               Cow position:chr18:38344858-38344633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:238-471
               
               
               Cow position:chr18:16686283-16686514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:238-473
               
               
               Cow position:chr18:1585061-1585296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:238-473
               
               
               Cow position:chr18:55499123-55498882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:238-475
               
               
               Cow position:chr18:32773930-32773695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:238-477
               
               
               Cow position:chr18:7951167-7950933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:239-471
               
               
               Cow position:chr18:39662830-39662601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:240-436
               
               
               Cow position:chr18:22055824-22056023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:240-454
               
               
               Cow position:chr18:10117550-10117343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:240-471
               
               
               Cow position:chr18:51443389-51443610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:240-475
               
               
               Cow position:chr18:4539832-4540062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:243-466
               
               
               Cow position:chr18:29356577-29356799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:243-466
               
               
               Cow position:chr18:34527048-34527271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:243-471
               
               
               Cow position:chr18:11691362-11691585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:243-471
               
               
               Cow position:chr18:46276255-46276486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 108

               
               
               Conread position:247-441
               
               
               Cow position:chr18:30405617-30405811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-460
               
               
               Cow position:chr18:7414985-7415195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:247-465
               
               
               Cow position:chr18:5995513-5995296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-466
               
               
               Cow position:chr18:28768411-28768187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:247-466
               
               
               Cow position:chr18:39001764-39001975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-471
               
               
               Cow position:chr18:37382050-37382271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):177, 62

               
               
               Conread position:247-471
               
               
               Cow position:chr18:43283713-43283935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:248-443
               
               
               Cow position:chr18:3387073-3387265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:248-471
               
               
               Cow position:chr18:55553009-55552792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):176, 61

               
               
               Conread position:250-440
               
               
               Cow position:chr18:4264356-4264538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:250-448
               
               
               Cow position:chr18:19688064-19687864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-464
               
               
               Cow position:chr18:4381334-4381121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-465
               
               
               Cow position:chr18:35537196-35537406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:250-471
               
               
               Cow position:chr18:346458-346679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:250-471
               
               
               Cow position:chr18:8300057-8299836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:250-473
               
               
               Cow position:chr18:17649698-17649920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:254-441
               
               
               Cow position:chr18:26998921-26998733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:254-461
               
               
               Cow position:chr18:3211914-3211704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:254-475
               
               
               Cow position:chr18:23714847-23715071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:256-477
               
               
               Cow position:chr18:306033-306244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:257-475
               
               
               Cow position:chr18:46436732-46436939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:259-435
               
               
               Cow position:chr18:10214159-10214338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:259-442
               
               
               Cow position:chr18:7965263-7965085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:264-443
               
               
               Cow position:chr18:43065556-43065378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:264-454
               
               
               Cow position:chr18:4952184-4952370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:264-460
               
               
               Cow position:chr18:4330987-4330788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:266-443
               
               
               Cow position:chr18:36296989-36297174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:266-475
               
               
               Cow position:chr18:12809879-12809677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:272-471
               
               
               Cow position:chr18:267801-267993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:280-471
               
               
               Cow position:chr18:219346-219155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:281-470
               
               
               Cow position:chr18:36478212-36478023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:282-476
               
               
               Cow position:chr18:2480664-2480470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:286-466
               
               
               Cow position:chr18:14085464-14085289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:286-466
               
               
               Cow position:chr18:44548908-44549087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:290-471
               
               
               Cow position:chr18:21205362-21205185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:296-472
               
               
               Cow position:chr18:10861435-10861616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:296-477
               
               
               Cow position:chr18:15340450-15340630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:300-443
               
               
               Cow position:chr18:42966852-42966714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:300-461
               
               
               Cow position:chr18:47314292-47314457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 160

               
               
               Conread position:300-465
               
               
               Cow position:chr18:33606621-33606457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:305-471
               
               
               Cow position:chr18:11166965-11166802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:309-464
               
               
               Cow position:chr18:35582117-35582271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:310-471
               
               
               Cow position:chr18:56150666-56150827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:318-466
               
               
               Cow position:chr18:19158991-19159143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:319-466
               
               
               Cow position:chr18:53962660-53962515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:338-471
               
               
               Cow position:chr18:16847647-16847514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:348-471
               
               
               Cow position:chr18:179081-179207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:349-467
               
               
               Cow position:chr18:23807928-23808047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:355-471
               
               
               Cow position:chr18:28823028-28823146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:358-475
               
               
               Cow position:chr18:54056494-54056376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:359-475
               
               
               Cow position:chr18:3098383-3098503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:364-475
               
               
               Cow position:chr18:26286840-26286730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:147-475
               
               
               Cow position:chr19:38907185-38907516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:155-323
               
               
               Cow position:chr19:34780286-34780457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:155-413
               
               
               Cow position:chr19:16659401-16659658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 166

               
               
               Conread position:155-422
               
               
               Cow position:chr19:35345096-35344818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:155-453
               
               
               Cow position:chr19:36976744-36977053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 189

               
               
               Conread position:155-464
               
               
               Cow position:chr19:34026548-34026842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:163-385
               
               
               Cow position:chr19:41645528-41645290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:163-443
               
               
               Cow position:chr19:10970930-10971223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):59, 195

               
               
               Conread position:163-448
               
               
               Cow position:chr19:40026774-40027065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:163-453
               
               
               Cow position:chr19:35540461-35540157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:163-454
               
               
               Cow position:chr19:36245332-36245624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):63, 140

               
               
               Conread position:163-461
               
               
               Cow position:chr19:30552166-30551882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 140

               
               
               Conread position:163-465
               
               
               Cow position:chr19:36380382-36380095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:163-466
               
               
               Cow position:chr19:2770858-2771164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:163-466
               
               
               Cow position:chr19:25271259-25271567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 142

               
               
               Conread position:163-470
               
               
               Cow position:chr19:48479134-48478823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:163-471
               
               
               Cow position:chr19:6532052-6531735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:163-471
               
               
               Cow position:chr19:33290641-33290330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:163-471
               
               
               Cow position:chr19:56063264-56063590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-475
               
               
               Cow position:chr19:1351305-1351597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:163-475
               
               
               Cow position:chr19:20310492-20310795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 56

               
               
               Conread position:164-470
               
               
               Cow position:chr19:11376244-11376560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:164-471
               
               
               Cow position:chr19:1153365-1153066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):55, 151

               
               
               Conread position:164-475
               
               
               Cow position:chr19:2342635-2342316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:164-475
               
               
               Cow position:chr19:40450179-40449856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:164-477
               
               
               Cow position:chr19:905124-904824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:164-477
               
               
               Cow position:chr19:20291934-20292250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:165-459
               
               
               Cow position:chr19:29115905-29115600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:165-465
               
               
               Cow position:chr19:9387792-9387485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 175

               
               
               Conread position:165-471
               
               
               Cow position:chr19:9408837-9408528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:167-466
               
               
               Cow position:chr19:1712985-1713294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 182

               
               
               Conread position:169-447
               
               
               Cow position:chr19:32214950-32214666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 172

               
               
               Conread position:169-466
               
               
               Cow position:chr19:31536281-31535976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 182

               
               
               Conread position:170-455
               
               
               Cow position:chr19:6516406-6516126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):139, 14

               
               
               Conread position:170-471
               
               
               Cow position:chr19:3217175-3216862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:173-471
               
               
               Cow position:chr19:26975928-26976215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:175-453
               
               
               Cow position:chr19:7741462-7741744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:177-471
               
               
               Cow position:chr19:10557200-10556885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 300

               
               
               Conread position:197-451
               
               
               Cow position:chr19:25041123-25041375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:198-461
               
               
               Cow position:chr19:40051280-40051536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:198-471
               
               
               Cow position:chr19:22765734-22765465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:208-466
               
               
               Cow position:chr19:10081179-10080918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:212-438
               
               
               Cow position:chr19:2577659-2577444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:212-466
               
               
               Cow position:chr19:15067907-15068153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:212-471
               
               
               Cow position:chr19:25807197-25807458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:212-477
               
               
               Cow position:chr19:56149965-56150232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:213-393
               
               
               Cow position:chr19:6344172-6343991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:213-397
               
               
               Cow position:chr19:39781619-39781435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-400
               
               
               Cow position:chr19:35322037-35322221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:213-401
               
               
               Cow position:chr19:4459341-4459527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-408
               
               
               Cow position:chr19:3870709-3870511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:213-408
               
               
               Cow position:chr19:41695561-41695758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:213-414
               
               
               Cow position:chr19:23394883-23394686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-415
               
               
               Cow position:chr19:41024323-41024124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-416
               
               
               Cow position:chr19:39648977-39649176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:213-417
               
               
               Cow position:chr19:729648-729846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:213-418
               
               
               Cow position:chr19:47986958-47986753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-419
               
               
               Cow position:chr19:12601904-12601708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-434
               
               
               Cow position:chr19:14631940-14632155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 108

               
               
               Conread position:213-439
               
               
               Cow position:chr19:10676762-10676977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:213-439
               
               
               Cow position:chr19:39384942-39385157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-440
               
               
               Cow position:chr19:51751066-51751295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr19:36845349-36845123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-444
               
               
               Cow position:chr19:34166466-34166241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):211, 91

               
               
               Conread position:213-446
               
               
               Cow position:chr19:37466962-37467191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-448
               
               
               Cow position:chr19:28924856-28924625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-452
               
               
               Cow position:chr19:52750659-52750898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-453
               
               
               Cow position:chr19:30886495-30886256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-455
               
               
               Cow position:chr19:13121184-13121415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-456
               
               
               Cow position:chr19:43292153-43291905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-459
               
               
               Cow position:chr19:39254346-39254597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 148

               
               
               Conread position:213-459
               
               
               Cow position:chr19:43202891-43203133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-460
               
               
               Cow position:chr19:15092037-15092272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-460
               
               
               Cow position:chr19:51285738-51285486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-461
               
               
               Cow position:chr19:50682346-50682585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-461
               
               
               Cow position:chr19:50849939-50849676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-464
               
               
               Cow position:chr19:14348110-14347863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:213-464
               
               
               Cow position:chr19:53542800-53543041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):211, 70

               
               
               Conread position:213-465
               
               
               Cow position:chr19:254701-254949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-465
               
               
               Cow position:chr19:6417708-6417445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):87, 139

               
               
               Conread position:213-465
               
               
               Cow position:chr19:11443090-11442831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr19:13316322-13316560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:213-465
               
               
               Cow position:chr19:18786223-18786470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-466
               
               
               Cow position:chr19:7884677-7884432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:213-466
               
               
               Cow position:chr19:10242676-10242435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr19:11191521-11191769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr19:21378370-21378620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr19:23304391-23304647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-466
               
               
               Cow position:chr19:33237273-33237025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-466
               
               
               Cow position:chr19:43431229-43431473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:213-466
               
               
               Cow position:chr19:48475227-48474994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr19:55957472-55957727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 151

               
               
               Conread position:213-467
               
               
               Cow position:chr19:5912861-5913110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 90

               
               
               Conread position:213-469
               
               
               Cow position:chr19:7637136-7637389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr19:3811920-3812167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr19:6687904-6688157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:8375203-8375461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr19:11424218-11424469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-471
               
               
               Cow position:chr19:12747677-12747932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:14253731-14253482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:21335496-21335768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:22134053-22134301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr19:22153750-22154013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr19:22798978-22799235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:23222729-23222480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr19:32457742-32457488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr19:34619930-34620186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr19:46454945-46454698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr19:48723122-48722873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr19:53840615-53840364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-472
               
               
               Cow position:chr19:46094537-46094796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-473
               
               
               Cow position:chr19:31846451-31846702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr19:7404277-7404540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr19:12698418-12698164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):107, 122

               
               
               Conread position:213-475
               
               
               Cow position:chr19:20622753-20622493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr19:21065865-21065607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr19:39622691-39622963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 66

               
               
               Conread position:213-477
               
               
               Cow position:chr19:43942-43682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-477
               
               
               Cow position:chr19:4503319-4503055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:213-477
               
               
               Cow position:chr19:17795995-17795734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 106

               
               
               Conread position:213-477
               
               
               Cow position:chr19:51185521-51185264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:214-461
               
               
               Cow position:chr19:21817061-21816816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:214-465
               
               
               Cow position:chr19:24759786-24760034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:214-466
               
               
               Cow position:chr19:52185667-52185920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:214-471
               
               
               Cow position:chr19:39361242-39360987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:215-461
               
               
               Cow position:chr19:32506020-32506260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:215-467
               
               
               Cow position:chr19:52215258-52215012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-471
               
               
               Cow position:chr19:30471257-30471498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:215-471
               
               
               Cow position:chr19:42695092-42694836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:216-440
               
               
               Cow position:chr19:2220979-2221204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:216-471
               
               
               Cow position:chr19:25652664-25652910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:216-471
               
               
               Cow position:chr19:39057341-39057088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:217-477
               
               
               Cow position:chr19:15438198-15437940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:218-464
               
               
               Cow position:chr19:17273645-17273880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:218-465
               
               
               Cow position:chr19:31595394-31595149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr19:34288120-34287869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:218-477
               
               
               Cow position:chr19:10213765-10213507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:219-452
               
               
               Cow position:chr19:43441260-43441028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:219-471
               
               
               Cow position:chr19:19662136-19661890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:219-475
               
               
               Cow position:chr19:15862958-15863203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:221-410
               
               
               Cow position:chr19:40127076-40127261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr19:6849105-6849319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-454
               
               
               Cow position:chr19:8869669-8869439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-454
               
               
               Cow position:chr19:9295292-9295074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:221-460
               
               
               Cow position:chr19:51621090-51621329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:221-461
               
               
               Cow position:chr19:43058616-43058390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):199, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr19:35233559-35233801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:221-466
               
               
               Cow position:chr19:42904099-42903857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr19:47453522-47453285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:221-469
               
               
               Cow position:chr19:6079265-6079515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:221-470
               
               
               Cow position:chr19:34001296-34001054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:221-471
               
               
               Cow position:chr19:3245959-3246206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:221-471
               
               
               Cow position:chr19:14593146-14592898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr19:36125677-36125432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr19:39576478-39576726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr19:41585059-41584819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr19:15719528-15719782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr19:16693941-16694207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr19:25851381-25851649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:221-477
               
               
               Cow position:chr19:25864817-25865085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:221-477
               
               
               Cow position:chr19:36060028-36059773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:222-475
               
               
               Cow position:chr19:22043256-22043513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:225-464
               
               
               Cow position:chr19:35064106-35064340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:228-359
               
               
               Cow position:chr19:46713721-46713590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:228-452
               
               
               Cow position:chr19:25035563-25035348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:228-465
               
               
               Cow position:chr19:13840449-13840207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:228-466
               
               
               Cow position:chr19:1664106-1664341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-466
               
               
               Cow position:chr19:44490178-44489944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:228-471
               
               
               Cow position:chr19:20661331-20661568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:228-476
               
               
               Cow position:chr19:35808062-35808298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:228-477
               
               
               Cow position:chr19:990330-990583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:229-465
               
               
               Cow position:chr19:47110124-47109889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:229-471
               
               
               Cow position:chr19:39751560-39751329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:229-476
               
               
               Cow position:chr19:52158623-52158373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:230-432
               
               
               Cow position:chr19:43190006-43189810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:230-463
               
               
               Cow position:chr19:12711793-12712024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:230-477
               
               
               Cow position:chr19:25673443-25673682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:232-466
               
               
               Cow position:chr19:38339905-38340131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 6

               
               
               Conread position:237-408
               
               
               Cow position:chr19:30910221-30910049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:237-432
               
               
               Cow position:chr19:39801959-39801760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:237-471
               
               
               Cow position:chr19:47859240-47859471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:237-471
               
               
               Cow position:chr19:55394975-55394750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:237-473
               
               
               Cow position:chr19:268429-268196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:237-473
               
               
               Cow position:chr19:8864816-8864586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):187, 56

               
               
               Conread position:238-441
               
               
               Cow position:chr19:42887023-42886832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:238-443
               
               
               Cow position:chr19:22449852-22450059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-454
               
               
               Cow position:chr19:4800816-4800602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-464
               
               
               Cow position:chr19:25769745-25769516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 72

               
               
               Conread position:238-466
               
               
               Cow position:chr19:7032044-7032265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:238-466
               
               
               Cow position:chr19:25526358-25526134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr19:4328979-4329199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:238-471
               
               
               Cow position:chr19:15887246-15887478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-471
               
               
               Cow position:chr19:33469095-33468868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:238-471
               
               
               Cow position:chr19:35742236-35742006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:238-471
               
               
               Cow position:chr19:50562755-50562519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):71, 221

               
               
               Conread position:238-471
               
               
               Cow position:chr19:51400940-51401163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:238-474
               
               
               Cow position:chr19:21199213-21198978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:238-475
               
               
               Cow position:chr19:8332374-8332132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:238-475
               
               
               Cow position:chr19:43418482-43418253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:238-475
               
               
               Cow position:chr19:54943043-54942811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:239-466
               
               
               Cow position:chr19:48960472-48960244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:239-471
               
               
               Cow position:chr19:2734523-2734295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:239-471
               
               
               Cow position:chr19:19919388-19919617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:240-466
               
               
               Cow position:chr19:24137334-24137111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:240-471
               
               
               Cow position:chr19:53371826-53372052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:243-467
               
               
               Cow position:chr19:8033817-8033593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:243-471
               
               
               Cow position:chr19:10545635-10545861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:243-471
               
               
               Cow position:chr19:35018176-35018400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:243-475
               
               
               Cow position:chr19:35762181-35762417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:243-475
               
               
               Cow position:chr19:41946252-41946024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:244-471
               
               
               Cow position:chr19:10186570-10186346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:245-471
               
               
               Cow position:chr19:42273783-42274003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:247-461
               
               
               Cow position:chr19:3621495-3621285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:247-466
               
               
               Cow position:chr19:10173050-10173267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:247-466
               
               
               Cow position:chr19:34425644-34425432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-466
               
               
               Cow position:chr19:35107594-35107378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:247-471
               
               
               Cow position:chr19:2589565-2589350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:247-471
               
               
               Cow position:chr19:13129935-13129717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:247-471
               
               
               Cow position:chr19:42240230-42240447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:247-471
               
               
               Cow position:chr19:53657957-53657741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:248-449
               
               
               Cow position:chr19:35846965-35846764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:248-454
               
               
               Cow position:chr19:33912560-33912769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:248-460
               
               
               Cow position:chr19:4445557-4445765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:248-464
               
               
               Cow position:chr19:12709746-12709963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-471
               
               
               Cow position:chr19:39245964-39245743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:249-476
               
               
               Cow position:chr19:31824950-31825174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:250-438
               
               
               Cow position:chr19:11110670-11110856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:250-459
               
               
               Cow position:chr19:7158658-7158868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr19:25053602-25053820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:250-460
               
               
               Cow position:chr19:37188088-37187879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:252-470
               
               
               Cow position:chr19:42205986-42205780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:252-471
               
               
               Cow position:chr19:35380492-35380705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:253-475
               
               
               Cow position:chr19:20935813-20935594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:253-475
               
               
               Cow position:chr19:38637759-38637965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:259-437
               
               
               Cow position:chr19:29070666-29070841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:264-460
               
               
               Cow position:chr19:28014527-28014336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:264-466
               
               
               Cow position:chr19:47118452-47118646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:264-467
               
               
               Cow position:chr19:26754084-26753882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:264-471
               
               
               Cow position:chr19:33823367-33823161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:264-477
               
               
               Cow position:chr19:31874169-31873949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:268-471
               
               
               Cow position:chr19:10232365-10232568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:268-473
               
               
               Cow position:chr19:37646792-37646998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:273-475
               
               
               Cow position:chr19:14928620-14928818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:274-464
               
               
               Cow position:chr19:33116635-33116448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:280-443
               
               
               Cow position:chr19:12094043-12093874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:281-465
               
               
               Cow position:chr19:10172032-10171851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:282-471
               
               
               Cow position:chr19:47727541-47727728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:287-471
               
               
               Cow position:chr19:15442786-15442610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:287-471
               
               
               Cow position:chr19:32451110-32450926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:291-471
               
               
               Cow position:chr19:46822477-46822303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:291-471
               
               
               Cow position:chr19:46918871-46918690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:291-477
               
               
               Cow position:chr19:8839628-8839440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:293-451
               
               
               Cow position:chr19:4511494-4511652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:298-471
               
               
               Cow position:chr19:8211822-8211992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:298-475
               
               
               Cow position:chr19:14992910-14993088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:309-460
               
               
               Cow position:chr19:19174154-19173999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:309-471
               
               
               Cow position:chr19:1552234-1552075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:310-464
               
               
               Cow position:chr19:10786369-10786518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-466
               
               
               Cow position:chr19:38596617-38596468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:311-467
               
               
               Cow position:chr19:35622358-35622207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:319-470
               
               
               Cow position:chr19:42746347-42746491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:337-475
               
               
               Cow position:chr19:30052030-30052171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:348-471
               
               
               Cow position:chr19:2138136-2138261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:349-475
               
               
               Cow position:chr19:42069979-42070108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:350-475
               
               
               Cow position:chr19:33932183-33932307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:355-466
               
               
               Cow position:chr19:10093255-10093141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:357-471
               
               
               Cow position:chr19:48409469-48409355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:359-471
               
               
               Cow position:chr19:4722080-4722191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:362-465
               
               
               Cow position:chr19:25131567-25131462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:364-467
               
               
               Cow position:chr19:27348321-27348422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:96-461
               
               
               Cow position:chr2:15166416-15166063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:117-475
               
               
               Cow position:chr2:38205542-38205914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:138-461
               
               
               Cow position:chr2:41314082-41313758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:142-471
               
               
               Cow position:chr2:24271426-24271085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:143-435
               
               
               Cow position:chr2:53496724-53497021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:143-467
               
               
               Cow position:chr2:18857948-18858284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:144-448
               
               
               Cow position:chr2:42970315-42969988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 244

               
               
               Conread position:145-471
               
               
               Cow position:chr2:11697294-11696989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):164, 63

               
               
               Conread position:146-293
               
               
               Cow position:chr2:42600317-42600163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:146-466
               
               
               Cow position:chr2:13604658-13604329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 202

               
               
               Conread position:155-389
               
               
               Cow position:chr2:76159393-76159628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:155-438
               
               
               Cow position:chr2:74964646-74964375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 162

               
               
               Conread position:155-439
               
               
               Cow position:chr2:24859203-24858895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 212

               
               
               Conread position:155-464
               
               
               Cow position:chr2:48748551-48748866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:155-465
               
               
               Cow position:chr2:44232285-44232590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 56

               
               
               Conread position:155-466
               
               
               Cow position:chr2:1651576-1651268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:155-466
               
               
               Cow position:chr2:28717851-28718135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:155-477
               
               
               Cow position:chr2:13877632-13877299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 197

               
               
               Conread position:158-465
               
               
               Cow position:chr2:20915820-20916124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:158-466
               
               
               Cow position:chr2:59380322-59380623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:160-466
               
               
               Cow position:chr2:39815103-39815422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 199

               
               
               Conread position:162-461
               
               
               Cow position:chr2:26042067-26042375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:162-469
               
               
               Cow position:chr2:35092516-35092833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 217

               
               
               Conread position:162-477
               
               
               Cow position:chr2:52171422-52171109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:163-373
               
               
               Cow position:chr2:13013268-13013043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:163-417
               
               
               Cow position:chr2:78198040-78197783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:163-451
               
               
               Cow position:chr2:38117834-38118115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:163-453
               
               
               Cow position:chr2:29382507-29382803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 183

               
               
               Conread position:163-453
               
               
               Cow position:chr2:80865683-80865981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 187

               
               
               Conread position:163-461
               
               
               Cow position:chr2:4071092-4070784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:163-461
               
               
               Cow position:chr2:46344861-46344554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 183

               
               
               Conread position:163-465
               
               
               Cow position:chr2:9173110-9173402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:163-465
               
               
               Cow position:chr2:39855954-39855649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:163-465
               
               
               Cow position:chr2:51028125-51027824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:163-466
               
               
               Cow position:chr2:21565-21877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:163-466
               
               
               Cow position:chr2:7720742-7721045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 142

               
               
               Conread position:163-466
               
               
               Cow position:chr2:42192614-42192295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 189

               
               
               Conread position:163-466
               
               
               Cow position:chr2:43773414-43773716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:163-471
               
               
               Cow position:chr2:7533591-7533911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-471
               
               
               Cow position:chr2:30817129-30816815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 131

               
               
               Conread position:163-471
               
               
               Cow position:chr2:45666194-45665887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 70

               
               
               Conread position:163-473
               
               
               Cow position:chr2:41057354-41057659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr2:32115252-32114923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:163-477
               
               
               Cow position:chr2:47990609-47990284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:163-477
               
               
               Cow position:chr2:70704426-70704104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:164-335
               
               
               Cow position:chr2:55831497-55831666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):145, 55

               
               
               Conread position:164-387
               
               
               Cow position:chr2:64213231-64213002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:164-416
               
               
               Cow position:chr2:52747164-52747410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):145, 55

               
               
               Conread position:164-423
               
               
               Cow position:chr2:65036105-65036379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:164-441
               
               
               Cow position:chr2:20250877-20250593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:164-442
               
               
               Cow position:chr2:51638722-51638440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:164-449
               
               
               Cow position:chr2:14734277-14733993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:164-454
               
               
               Cow position:chr2:70495435-70495145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:164-461
               
               
               Cow position:chr2:15674718-15674412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:164-464
               
               
               Cow position:chr2:13709626-13709334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:164-466
               
               
               Cow position:chr2:73544716-73545033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 140

               
               
               Conread position:164-466
               
               
               Cow position:chr2:81348707-81349020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:164-471
               
               
               Cow position:chr2:34618088-34617786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:164-475
               
               
               Cow position:chr2:31457658-31457337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:164-475
               
               
               Cow position:chr2:42384555-42384253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:164-475
               
               
               Cow position:chr2:50408842-50408531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:165-430
               
               
               Cow position:chr2:46971295-46971015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:165-431
               
               
               Cow position:chr2:39398094-39398364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 191

               
               
               Conread position:165-471
               
               
               Cow position:chr2:47056068-47055764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:165-471
               
               
               Cow position:chr2:51799150-51799466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:165-475
               
               
               Cow position:chr2:85280961-85281262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:165-477
               
               
               Cow position:chr2:28680574-28680864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:166-389
               
               
               Cow position:chr2:53500859-53501098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 192

               
               
               Conread position:166-461
               
               
               Cow position:chr2:31155876-31155582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:166-464
               
               
               Cow position:chr2:1658673-1658357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 206

               
               
               Conread position:166-465
               
               
               Cow position:chr2:15250354-15250043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 200

               
               
               Conread position:166-466
               
               
               Cow position:chr2:38362193-38362507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:166-467
               
               
               Cow position:chr2:29269213-29268919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):131, 53

               
               
               Conread position:166-468
               
               
               Cow position:chr2:4383729-4384037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:166-471
               
               
               Cow position:chr2:30640374-30640045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 201

               
               
               Conread position:167-465
               
               
               Cow position:chr2:70664185-70663875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:167-471
               
               
               Cow position:chr2:45367465-45367150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:168-461
               
               
               Cow position:chr2:425980-425680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 144

               
               
               Conread position:168-465
               
               
               Cow position:chr2:18061464-18061764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:168-470
               
               
               Cow position:chr2:10356512-10356817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:169-465
               
               
               Cow position:chr2:11734689-11734380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:169-465
               
               
               Cow position:chr2:14555589-14555888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:172-454
               
               
               Cow position:chr2:56269450-56269740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:175-440
               
               
               Cow position:chr2:387623-387888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 169

               
               
               Conread position:179-453
               
               
               Cow position:chr2:32446185-32446460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:179-457
               
               
               Cow position:chr2:12051311-12051018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:186-440
               
               
               Cow position:chr2:43123476-43123224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:187-471
               
               
               Cow position:chr2:2589815-2590095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:187-471
               
               
               Cow position:chr2:41461517-41461224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:190-466
               
               
               Cow position:chr2:50580505-50580233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:191-464
               
               
               Cow position:chr2:50793890-50793605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:192-475
               
               
               Cow position:chr2:14709987-14710255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:196-466
               
               
               Cow position:chr2:34256165-34256435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:197-466
               
               
               Cow position:chr2:42309418-42309693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:198-424
               
               
               Cow position:chr2:40803126-40802907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:198-466
               
               
               Cow position:chr2:50400551-50400285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:198-476
               
               
               Cow position:chr2:56248920-56248640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:200-465
               
               
               Cow position:chr2:16514901-16514646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:200-465
               
               
               Cow position:chr2:43835438-43835698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:200-466
               
               
               Cow position:chr2:47115796-47116054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:203-465
               
               
               Cow position:chr2:70579572-70579846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:204-475
               
               
               Cow position:chr2:25597377-25597645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:206-475
               
               
               Cow position:chr2:38785474-38785756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:206-477
               
               
               Cow position:chr2:28257588-28257306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:209-466
               
               
               Cow position:chr2:82580813-82581070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):98, 137

               
               
               Conread position:210-471
               
               
               Cow position:chr2:32264279-32264537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:210-477
               
               
               Cow position:chr2:29160020-29159751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 127

               
               
               Conread position:212-448
               
               
               Cow position:chr2:76861344-76861584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-451
               
               
               Cow position:chr2:26880194-26879955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:212-477
               
               
               Cow position:chr2:39489885-39489633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:212-477
               
               
               Cow position:chr2:53532698-53532959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:213-403
               
               
               Cow position:chr2:16018121-16018308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-405
               
               
               Cow position:chr2:60429391-60429201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:213-410
               
               
               Cow position:chr2:29860113-29859927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:213-411
               
               
               Cow position:chr2:46383355-46383547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-415
               
               
               Cow position:chr2:13645429-13645234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-416
               
               
               Cow position:chr2:48130731-48130532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:213-417
               
               
               Cow position:chr2:68870801-68870604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:213-419
               
               
               Cow position:chr2:40257301-40257507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:213-435
               
               
               Cow position:chr2:50353004-50352779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-438
               
               
               Cow position:chr2:19137779-19138005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-438
               
               
               Cow position:chr2:45642376-45642602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:213-441
               
               
               Cow position:chr2:4016737-4016954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:213-441
               
               
               Cow position:chr2:55496185-55496401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:213-443
               
               
               Cow position:chr2:36077463-36077235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr2:39228921-39228691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:213-443
               
               
               Cow position:chr2:39263598-39263375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-443
               
               
               Cow position:chr2:44022695-44022923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr2:48634934-48635161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-443
               
               
               Cow position:chr2:69579568-69579794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-444
               
               
               Cow position:chr2:40597680-40597462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-445
               
               
               Cow position:chr2:30351595-30351820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-446
               
               
               Cow position:chr2:56056859-56056627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-447
               
               
               Cow position:chr2:44222935-44222701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-452
               
               
               Cow position:chr2:85926170-85925932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr2:12682551-12682789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr2:31460224-31460458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:213-454
               
               
               Cow position:chr2:60690997-60690757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:213-454
               
               
               Cow position:chr2:61421057-61421301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-454
               
               
               Cow position:chr2:65932076-65931836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-454
               
               
               Cow position:chr2:68190531-68190769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:213-454
               
               
               Cow position:chr2:69419474-69419714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-458
               
               
               Cow position:chr2:15058953-15059193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-459
               
               
               Cow position:chr2:48525429-48525678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr2:39598073-39597829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:213-461
               
               
               Cow position:chr2:72407388-72407625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:213-463
               
               
               Cow position:chr2:49428492-49428245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:213-464
               
               
               Cow position:chr2:5130343-5130588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:213-464
               
               
               Cow position:chr2:32048591-32048344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-464
               
               
               Cow position:chr2:41185566-41185336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):211, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr2:32402858-32403111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-465
               
               
               Cow position:chr2:42608177-42607928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 108

               
               
               Conread position:213-465
               
               
               Cow position:chr2:55632886-55632641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:213-465
               
               
               Cow position:chr2:69747505-69747757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr2:13369765-13369517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-466
               
               
               Cow position:chr2:13582694-13582443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-466
               
               
               Cow position:chr2:16428290-16428536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:213-466
               
               
               Cow position:chr2:18997830-18997586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr2:21382742-21382992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr2:26102878-26102641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr2:40728461-40728213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr2:42255546-42255298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr2:45624125-45623877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr2:68487895-68488144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-467
               
               
               Cow position:chr2:19211946-19212192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr2:43907078-43907325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr2:44025488-44025232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-470
               
               
               Cow position:chr2:6901887-6901635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr2:549219-549472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 75

               
               
               Conread position:213-471
               
               
               Cow position:chr2:7524021-7524281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-471
               
               
               Cow position:chr2:16505366-16505619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr2:17940177-17940431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr2:17966918-17967173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr2:20362544-20362788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:213-471
               
               
               Cow position:chr2:25283226-25282967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr2:26438613-26438869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:213-471
               
               
               Cow position:chr2:26500822-26501078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr2:29802025-29802256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr2:30642552-30642813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-471
               
               
               Cow position:chr2:31500112-31499859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr2:32416749-32416999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:213-471
               
               
               Cow position:chr2:38658676-38658923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-471
               
               
               Cow position:chr2:41954996-41954739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:213-471
               
               
               Cow position:chr2:42183483-42183224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr2:45478486-45478732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr2:47008233-47008487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr2:47152440-47152679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):211, 60

               
               
               Conread position:213-471
               
               
               Cow position:chr2:54700567-54700309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr2:59396943-59397200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr2:69823701-69823442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr2:72183381-72183631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr2:80963539-80963791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:213-471
               
               
               Cow position:chr2:81388801-81388548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:213-471
               
               
               Cow position:chr2:83410617-83410366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:213-472
               
               
               Cow position:chr2:67745353-67745108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:213-473
               
               
               Cow position:chr2:7383578-7383828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-473
               
               
               Cow position:chr2:24593978-24593723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-474
               
               
               Cow position:chr2:79845-80109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:213-474
               
               
               Cow position:chr2:81927958-81927707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 91

               
               
               Conread position:213-475
               
               
               Cow position:chr2:7573394-7573653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-475
               
               
               Cow position:chr2:14218762-14218498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 146

               
               
               Conread position:213-475
               
               
               Cow position:chr2:17328861-17328600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr2:43596043-43596320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:213-475
               
               
               Cow position:chr2:46909325-46909587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-475
               
               
               Cow position:chr2:49467740-49467474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:213-475
               
               
               Cow position:chr2:54789885-54789620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 141

               
               
               Conread position:213-475
               
               
               Cow position:chr2:61485734-61485482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-475
               
               
               Cow position:chr2:73353903-73353641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):211, 97

               
               
               Conread position:213-475
               
               
               Cow position:chr2:76313758-76314014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr2:80275183-80275445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:213-477
               
               
               Cow position:chr2:1304060-1303799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-477
               
               
               Cow position:chr2:12558421-12558680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr2:27337668-27337929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-477
               
               
               Cow position:chr2:47073298-47073041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):219, 95

               
               
               Conread position:213-477
               
               
               Cow position:chr2:64323351-64323091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:213-477
               
               
               Cow position:chr2:72528070-72527803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:214-448
               
               
               Cow position:chr2:66149435-66149192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 219

               
               
               Conread position:214-453
               
               
               Cow position:chr2:27173477-27173243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:214-459
               
               
               Cow position:chr2:39237522-39237286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:214-460
               
               
               Cow position:chr2:45439544-45439309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:214-466
               
               
               Cow position:chr2:38273659-38273402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:214-471
               
               
               Cow position:chr2:26806007-26806258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:214-474
               
               
               Cow position:chr2:44051418-44051162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:214-476
               
               
               Cow position:chr2:58135282-58135546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:214-477
               
               
               Cow position:chr2:46119658-46119912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:215-412
               
               
               Cow position:chr2:19502376-19502564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):144, 32

               
               
               Conread position:215-435
               
               
               Cow position:chr2:14626700-14626473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-465
               
               
               Cow position:chr2:41019101-41019352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-468
               
               
               Cow position:chr2:23270824-23271069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 115

               
               
               Conread position:215-471
               
               
               Cow position:chr2:39514144-39513879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 250

               
               
               Conread position:215-471
               
               
               Cow position:chr2:54968116-54967862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:215-475
               
               
               Cow position:chr2:6697395-6697642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):157, 32

               
               
               Conread position:216-443
               
               
               Cow position:chr2:41040602-41040825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):102, 87

               
               
               Conread position:216-466
               
               
               Cow position:chr2:70896142-70895891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):93, 121

               
               
               Conread position:216-475
               
               
               Cow position:chr2:10655750-10656000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:218-466
               
               
               Cow position:chr2:79404208-79403961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:218-470
               
               
               Cow position:chr2:46343041-46343281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:218-471
               
               
               Cow position:chr2:15298643-15298392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr2:21380295-21380544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):6, 88

               
               
               Conread position:218-471
               
               
               Cow position:chr2:23847718-23847969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):5, 70

               
               
               Conread position:218-471
               
               
               Cow position:chr2:39584556-39584310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 129

               
               
               Conread position:218-471
               
               
               Cow position:chr2:41248676-41248423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-475
               
               
               Cow position:chr2:32431632-32431878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:219-464
               
               
               Cow position:chr2:47148020-47147772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:219-471
               
               
               Cow position:chr2:9063377-9063130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr2:14854409-14854171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-471
               
               
               Cow position:chr2:34749880-34750124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr2:45542295-45542539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr2:47624303-47624545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr2:56828457-56828713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:219-473
               
               
               Cow position:chr2:39334767-39335011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:219-475
               
               
               Cow position:chr2:827507-827761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:219-475
               
               
               Cow position:chr2:992260-992007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:220-466
               
               
               Cow position:chr2:54883570-54883327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):117, 8

               
               
               Conread position:221-386
               
               
               Cow position:chr2:39544698-39544863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-428
               
               
               Cow position:chr2:13271317-13271522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-435
               
               
               Cow position:chr2:32989657-32989876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:221-441
               
               
               Cow position:chr2:46190876-46191091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-444
               
               
               Cow position:chr2:33988215-33988431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-444
               
               
               Cow position:chr2:55062979-55062768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-448
               
               
               Cow position:chr2:29734921-29734701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-452
               
               
               Cow position:chr2:62861690-62861463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:221-453
               
               
               Cow position:chr2:85339355-85339586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr2:17805656-17805901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:221-465
               
               
               Cow position:chr2:45912530-45912772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:221-466
               
               
               Cow position:chr2:1638705-1638463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr2:19286980-19287216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr2:25448430-25448191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr2:41452335-41452093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr2:46052601-46052368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr2:50566036-50565787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr2:56350815-56351056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr2:69199219-69199454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:221-471
               
               
               Cow position:chr2:15597376-15597617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:17114628-17114876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:32660279-32660030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr2:39564455-39564213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:43995038-43994794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:44081538-44081292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:46120540-46120776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr2:46243911-46244166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:221-471
               
               
               Cow position:chr2:50278124-50277880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:221-475
               
               
               Cow position:chr2:1487273-1487022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr2:19494316-19494056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr2:28710891-28711143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:221-475
               
               
               Cow position:chr2:44482542-44482794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:221-475
               
               
               Cow position:chr2:45565808-45565550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr2:46202363-46202118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:221-477
               
               
               Cow position:chr2:71437276-71437531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:222-448
               
               
               Cow position:chr2:80770216-80769996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:222-466
               
               
               Cow position:chr2:46033437-46033193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:222-471
               
               
               Cow position:chr2:33262515-33262761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:222-471
               
               
               Cow position:chr2:70781191-70780952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:223-471
               
               
               Cow position:chr2:58057161-58056922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 85

               
               
               Conread position:228-466
               
               
               Cow position:chr2:46194887-46194656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:228-471
               
               
               Cow position:chr2:46746019-46745779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:229-466
               
               
               Cow position:chr2:45535561-45535326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:229-471
               
               
               Cow position:chr2:5999040-5998802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:229-471
               
               
               Cow position:chr2:46230668-46230907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:230-466
               
               
               Cow position:chr2:76562200-76561973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:230-471
               
               
               Cow position:chr2:42936115-42936354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:230-475
               
               
               Cow position:chr2:47065201-47064967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:230-475
               
               
               Cow position:chr2:70674819-70674579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:231-466
               
               
               Cow position:chr2:28820457-28820224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:232-465
               
               
               Cow position:chr2:62644679-62644450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:237-436
               
               
               Cow position:chr2:77282107-77281910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 72

               
               
               Conread position:237-460
               
               
               Cow position:chr2:69367040-69367263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:237-471
               
               
               Cow position:chr2:2740547-2740321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:238-400
               
               
               Cow position:chr2:12839956-12840116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:238-412
               
               
               Cow position:chr2:13062132-13062309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:238-420
               
               
               Cow position:chr2:39672662-39672845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 104

               
               
               Conread position:238-441
               
               
               Cow position:chr2:39798328-39798124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:238-443
               
               
               Cow position:chr2:72309925-72310121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:238-454
               
               
               Cow position:chr2:42293339-42293123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):66, 71

               
               
               Conread position:238-461
               
               
               Cow position:chr2:46406420-46406184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:238-463
               
               
               Cow position:chr2:82311114-82311337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:238-466
               
               
               Cow position:chr2:192380-192598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr2:2673617-2673387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:238-466
               
               
               Cow position:chr2:9325085-9324857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-466
               
               
               Cow position:chr2:45499116-45499341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-467
               
               
               Cow position:chr2:64131504-64131281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:238-471
               
               
               Cow position:chr2:777600-777836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr2:26851249-26851015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:238-471
               
               
               Cow position:chr2:41088016-41088258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr2:52344837-52344610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr2:54790368-54790138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:238-471
               
               
               Cow position:chr2:80116183-80115957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:238-474
               
               
               Cow position:chr2:29121967-29121737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:238-475
               
               
               Cow position:chr2:6039099-6038855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-475
               
               
               Cow position:chr2:56937766-56937531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-477
               
               
               Cow position:chr2:24106481-24106244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:239-433
               
               
               Cow position:chr2:22113611-22113809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:239-465
               
               
               Cow position:chr2:62309345-62309566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:239-466
               
               
               Cow position:chr2:41622566-41622344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:239-470
               
               
               Cow position:chr2:66480101-66480331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:239-471
               
               
               Cow position:chr2:28653451-28653681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 81

               
               
               Conread position:240-454
               
               
               Cow position:chr2:78870884-78870686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:240-471
               
               
               Cow position:chr2:16564761-16564542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):184, 10

               
               
               Conread position:241-419
               
               
               Cow position:chr2:40410228-40410049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:243-466
               
               
               Cow position:chr2:46189015-46189237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:243-466
               
               
               Cow position:chr2:46331144-46330921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:243-466
               
               
               Cow position:chr2:54810774-54810993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:243-471
               
               
               Cow position:chr2:30144797-30144578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:243-471
               
               
               Cow position:chr2:36436288-36436061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:244-475
               
               
               Cow position:chr2:80324767-80325001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:247-443
               
               
               Cow position:chr2:69250592-69250787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 62

               
               
               Conread position:247-465
               
               
               Cow position:chr2:988763-988556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-465
               
               
               Cow position:chr2:67595943-67596153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:247-466
               
               
               Cow position:chr2:3308950-3309169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:247-471
               
               
               Cow position:chr2:2382481-2382703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:247-471
               
               
               Cow position:chr2:6539161-6539379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:247-471
               
               
               Cow position:chr2:20900386-20900608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:247-471
               
               
               Cow position:chr2:21416374-21416162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-471
               
               
               Cow position:chr2:69676454-69676679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:247-473
               
               
               Cow position:chr2:19294671-19294448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:247-475
               
               
               Cow position:chr2:76110473-76110246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:247-477
               
               
               Cow position:chr2:18621493-18621259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:248-466
               
               
               Cow position:chr2:19156108-19156324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:248-471
               
               
               Cow position:chr2:70539296-70539519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:248-475
               
               
               Cow position:chr2:4254459-4254685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:250-400
               
               
               Cow position:chr2:39223731-39223576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 104

               
               
               Conread position:250-454
               
               
               Cow position:chr2:80242109-80242316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr2:26170819-26170610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:250-460
               
               
               Cow position:chr2:68970813-68970603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:250-471
               
               
               Cow position:chr2:41145389-41145170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr2:42226188-42226411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:250-471
               
               
               Cow position:chr2:44170633-44170416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:250-472
               
               
               Cow position:chr2:13036192-13035970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:250-476
               
               
               Cow position:chr2:25966817-25967042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-477
               
               
               Cow position:chr2:36105344-36105117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:251-454
               
               
               Cow position:chr2:10867819-10868022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:252-453
               
               
               Cow position:chr2:45281722-45281524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:252-460
               
               
               Cow position:chr2:65269618-65269827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:253-465
               
               
               Cow position:chr2:51824995-51824786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:253-471
               
               
               Cow position:chr2:76764639-76764848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:254-471
               
               
               Cow position:chr2:45935891-45936101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:255-464
               
               
               Cow position:chr2:74260527-74260319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:257-451
               
               
               Cow position:chr2:33531881-33532079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:258-466
               
               
               Cow position:chr2:4273199-4273408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:259-444
               
               
               Cow position:chr2:51098020-51098205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-453
               
               
               Cow position:chr2:13856757-13856950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:259-455
               
               
               Cow position:chr2:17409942-17410134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:259-459
               
               
               Cow position:chr2:16481796-16481994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:259-460
               
               
               Cow position:chr2:74353964-74353762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-460
               
               
               Cow position:chr2:76340586-76340792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:259-464
               
               
               Cow position:chr2:13354741-13354538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:263-466
               
               
               Cow position:chr2:39662766-39662562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:264-467
               
               
               Cow position:chr2:67313629-67313829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:264-471
               
               
               Cow position:chr2:34535097-34535301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-471
               
               
               Cow position:chr2:36878158-36878358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:264-473
               
               
               Cow position:chr2:40691542-40691340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:264-475
               
               
               Cow position:chr2:51594825-51594616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:266-465
               
               
               Cow position:chr2:14313253-14313055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:266-475
               
               
               Cow position:chr2:59905984-59906191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:266-477
               
               
               Cow position:chr2:30113080-30112861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:267-449
               
               
               Cow position:chr2:50445959-50445775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:267-461
               
               
               Cow position:chr2:61974854-61974665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:267-465
               
               
               Cow position:chr2:11806376-11806185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:268-475
               
               
               Cow position:chr2:11617151-11616945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:268-475
               
               
               Cow position:chr2:46175204-46175408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:271-460
               
               
               Cow position:chr2:1756094-1755902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:273-466
               
               
               Cow position:chr2:69238330-69238130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:274-471
               
               
               Cow position:chr2:23493585-23493393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:279-471
               
               
               Cow position:chr2:55960567-55960759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:280-443
               
               
               Cow position:chr2:81894297-81894460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:280-460
               
               
               Cow position:chr2:19594766-19594583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:280-471
               
               
               Cow position:chr2:52484924-52485121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:281-471
               
               
               Cow position:chr2:28118544-28118354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:284-471
               
               
               Cow position:chr2:45470047-45469863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:286-448
               
               
               Cow position:chr2:69828798-69828957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:287-454
               
               
               Cow position:chr2:58563795-58563958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:287-465
               
               
               Cow position:chr2:78220136-78219960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:294-471
               
               
               Cow position:chr2:76182781-76182957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:297-466
               
               
               Cow position:chr2:63865298-63865467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:302-465
               
               
               Cow position:chr2:66614888-66615053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:309-471
               
               
               Cow position:chr2:45311105-45311267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:310-466
               
               
               Cow position:chr2:80839117-80839270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:310-471
               
               
               Cow position:chr2:39058875-39058709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:310-471
               
               
               Cow position:chr2:46353475-46353638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:310-471
               
               
               Cow position:chr2:66563220-66563377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:314-471
               
               
               Cow position:chr2:78116337-78116491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:315-466
               
               
               Cow position:chr2:21355843-21355989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:315-471
               
               
               Cow position:chr2:56102448-56102610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:319-466
               
               
               Cow position:chr2:818594-818446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:319-475
               
               
               Cow position:chr2:77359487-77359335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:337-467
               
               
               Cow position:chr2:22969131-22968999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:337-471
               
               
               Cow position:chr2:82647830-82647964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:344-465
               
               
               Cow position:chr2:77378229-77378108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:348-472
               
               
               Cow position:chr2:32408513-32408637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:349-461
               
               
               Cow position:chr2:60468222-60468333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:350-466
               
               
               Cow position:chr2:71163738-71163852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:353-466
               
               
               Cow position:chr2:42599906-42599793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:353-471
               
               
               Cow position:chr2:45537459-45537579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:357-471
               
               
               Cow position:chr2:17493346-17493463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:358-471
               
               
               Cow position:chr2:80797638-80797527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:381-473
               
               
               Cow position:chr2:14349732-14349640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:140-473
               
               
               Cow position:chr20:19266381-19266052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:155-415
               
               
               Cow position:chr20:4786791-4787059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:155-453
               
               
               Cow position:chr20:36741703-36741391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:155-465
               
               
               Cow position:chr20:40511532-40511853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 190

               
               
               Conread position:158-474
               
               
               Cow position:chr20:34108326-34108005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 176

               
               
               Conread position:162-466
               
               
               Cow position:chr20:8262128-8261814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:163-436
               
               
               Cow position:chr20:6903526-6903249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:163-444
               
               
               Cow position:chr20:20359570-20359857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:163-445
               
               
               Cow position:chr20:21204565-21204283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:163-448
               
               
               Cow position:chr20:5576420-5576138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:163-453
               
               
               Cow position:chr20:5645008-5644702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-465
               
               
               Cow position:chr20:8702698-8703005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 160

               
               
               Conread position:163-465
               
               
               Cow position:chr20:40257182-40256872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:163-466
               
               
               Cow position:chr20:311535-311246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:163-466
               
               
               Cow position:chr20:11741084-11741397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):59, 162

               
               
               Conread position:163-466
               
               
               Cow position:chr20:19363155-19363460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 202

               
               
               Conread position:163-470
               
               
               Cow position:chr20:13465719-13465412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:163-475
               
               
               Cow position:chr20:7658993-7659326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 212

               
               
               Conread position:163-475
               
               
               Cow position:chr20:14572145-14572467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-477
               
               
               Cow position:chr20:23235244-23234922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:164-443
               
               
               Cow position:chr20:35192990-35192703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:164-466
               
               
               Cow position:chr20:15312882-15312567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:164-471
               
               
               Cow position:chr20:10838003-10838319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:164-471
               
               
               Cow position:chr20:25686135-25686450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 205

               
               
               Conread position:164-477
               
               
               Cow position:chr20:4334307-4334631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 194

               
               
               Conread position:164-477
               
               
               Cow position:chr20:13493957-13493621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 67

               
               
               Conread position:165-319
               
               
               Cow position:chr20:32893014-32892848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:165-467
               
               
               Cow position:chr20:23103422-23103122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:165-469
               
               
               Cow position:chr20:30119362-30119677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:165-471
               
               
               Cow position:chr20:31081251-31080940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:166-288
               
               
               Cow position:chr20:21698964-21698830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:166-417
               
               
               Cow position:chr20:35842918-35843175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:166-467
               
               
               Cow position:chr20:29805448-29805757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 184

               
               
               Conread position:167-453
               
               
               Cow position:chr20:1205728-1206018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:168-475
               
               
               Cow position:chr20:34001190-34001507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:170-466
               
               
               Cow position:chr20:14540552-14540255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 176

               
               
               Conread position:180-471
               
               
               Cow position:chr20:13967067-13967362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:181-475
               
               
               Cow position:chr20:17670378-17670075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:187-464
               
               
               Cow position:chr20:16492263-16491977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 165

               
               
               Conread position:189-465
               
               
               Cow position:chr20:24234334-24234065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:189-475
               
               
               Cow position:chr20:14759489-14759771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):120, 23

               
               
               Conread position:192-471
               
               
               Cow position:chr20:6603215-6602938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:198-465
               
               
               Cow position:chr20:1576277-1576003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:198-473
               
               
               Cow position:chr20:40185507-40185785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:205-465
               
               
               Cow position:chr20:32861829-32862089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:206-443
               
               
               Cow position:chr20:28818764-28819005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:208-466
               
               
               Cow position:chr20:7441980-7442223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):216, 13

               
               
               Conread position:209-454
               
               
               Cow position:chr20:38551521-38551287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:210-408
               
               
               Cow position:chr20:40158056-40157862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):99, 127

               
               
               Conread position:210-441
               
               
               Cow position:chr20:16548122-16548350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:210-471
               
               
               Cow position:chr20:24711997-24711733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:212-465
               
               
               Cow position:chr20:20203373-20203120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:212-466
               
               
               Cow position:chr20:31740069-31740317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:212-471
               
               
               Cow position:chr20:13025456-13025712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 126

               
               
               Conread position:212-475
               
               
               Cow position:chr20:35906896-35907158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:213-415
               
               
               Cow position:chr20:39016719-39016922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-435
               
               
               Cow position:chr20:21345586-21345361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:213-435
               
               
               Cow position:chr20:33067207-33067430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-436
               
               
               Cow position:chr20:16941135-16941357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:213-436
               
               
               Cow position:chr20:21372461-21372240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-438
               
               
               Cow position:chr20:11359479-11359693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:213-439
               
               
               Cow position:chr20:24902140-24902367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-442
               
               
               Cow position:chr20:41627188-41627422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:213-454
               
               
               Cow position:chr20:14433270-14433514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr20:18392118-18392347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):211, 82

               
               
               Conread position:213-454
               
               
               Cow position:chr20:40692217-40691970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-461
               
               
               Cow position:chr20:10208961-10208714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 34

               
               
               Conread position:213-463
               
               
               Cow position:chr20:28249333-28249089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr20:12995853-12996105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr20:22485012-22484764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):211, 122

               
               
               Conread position:213-466
               
               
               Cow position:chr20:6096342-6096590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr20:10200499-10200250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr20:11481982-11482232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:213-466
               
               
               Cow position:chr20:13652214-13652455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr20:15565676-15565924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:213-466
               
               
               Cow position:chr20:23064682-23064926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:213-466
               
               
               Cow position:chr20:28594440-28594186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:213-466
               
               
               Cow position:chr20:28982853-28982602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:213-466
               
               
               Cow position:chr20:33144400-33144652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr20:39415903-39415647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:213-466
               
               
               Cow position:chr20:39728604-39728351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:213-471
               
               
               Cow position:chr20:3599245-3599492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:213-471
               
               
               Cow position:chr20:5636634-5636382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:213-471
               
               
               Cow position:chr20:6054356-6054620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr20:7426044-7426289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr20:8547219-8546964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:213-471
               
               
               Cow position:chr20:8556116-8556372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr20:9433740-9433485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr20:11188654-11188907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr20:14879942-14879688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr20:15568796-15569048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr20:22959195-22959444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr20:23870666-23870914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:213-471
               
               
               Cow position:chr20:24069960-24069702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr20:28955547-28955804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 128

               
               
               Conread position:213-471
               
               
               Cow position:chr20:34097800-34098060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr20:36207967-36207704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 153

               
               
               Conread position:213-471
               
               
               Cow position:chr20:36633965-36633715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:213-471
               
               
               Cow position:chr20:39266805-39267061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 95

               
               
               Conread position:213-473
               
               
               Cow position:chr20:580767-581025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-473
               
               
               Cow position:chr20:19751460-19751204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr20:20099447-20099704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):170, 90

               
               
               Conread position:213-475
               
               
               Cow position:chr20:20967474-20967224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr20:20984145-20983890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr20:29845203-29844944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-475
               
               
               Cow position:chr20:40782114-40781858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chr20:4621201-4621454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:213-477
               
               
               Cow position:chr20:28067271-28067535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:214-316
               
               
               Cow position:chr20:22923070-22922967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:214-422
               
               
               Cow position:chr20:20898438-20898643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 123

               
               
               Conread position:215-433
               
               
               Cow position:chr20:354750-354961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-461
               
               
               Cow position:chr20:34777331-34777092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:215-466
               
               
               Cow position:chr20:42458705-42458946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):209, 88

               
               
               Conread position:216-466
               
               
               Cow position:chr20:5950493-5950740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:218-442
               
               
               Cow position:chr20:17100509-17100287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:218-454
               
               
               Cow position:chr20:6424115-6423886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:218-464
               
               
               Cow position:chr20:6240371-6240616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:218-465
               
               
               Cow position:chr20:17846106-17845865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:218-466
               
               
               Cow position:chr20:14980356-14980608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:218-466
               
               
               Cow position:chr20:25009484-25009736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:218-471
               
               
               Cow position:chr20:9266949-9267202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:218-471
               
               
               Cow position:chr20:28296442-28296189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:218-471
               
               
               Cow position:chr20:38768315-38768558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 75

               
               
               Conread position:219-435
               
               
               Cow position:chr20:9376615-9376403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-461
               
               
               Cow position:chr20:18320648-18320883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-464
               
               
               Cow position:chr20:15822692-15822457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-465
               
               
               Cow position:chr20:40450168-40449914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:220-445
               
               
               Cow position:chr20:23850764-23850544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:220-466
               
               
               Cow position:chr20:6890864-6890619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:221-419
               
               
               Cow position:chr20:10772349-10772154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-436
               
               
               Cow position:chr20:20056342-20056552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-438
               
               
               Cow position:chr20:23506326-23506539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:221-441
               
               
               Cow position:chr20:20739143-20739359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):185, 10

               
               
               Conread position:221-444
               
               
               Cow position:chr20:5078771-5078548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-453
               
               
               Cow position:chr20:22265108-22265330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:221-455
               
               
               Cow position:chr20:11548580-11548810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-461
               
               
               Cow position:chr20:32988677-32988931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:221-464
               
               
               Cow position:chr20:38818145-38817911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:221-465
               
               
               Cow position:chr20:14807031-14806790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr20:25161981-25162224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr20:7438707-7438949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr20:21761919-21761679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:221-466
               
               
               Cow position:chr20:33438836-33439079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:221-470
               
               
               Cow position:chr20:26996673-26996433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr20:9537287-9537032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:221-471
               
               
               Cow position:chr20:12420475-12420720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr20:21929049-21928802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr20:23792748-23792509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr20:36779585-36779832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr20:28605353-28605098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr20:33435005-33435274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:221-477
               
               
               Cow position:chr20:12581810-12582061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):87, 8

               
               
               Conread position:223-464
               
               
               Cow position:chr20:8578392-8578153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:223-467
               
               
               Cow position:chr20:38872859-38873109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:224-471
               
               
               Cow position:chr20:35009599-35009848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:228-447
               
               
               Cow position:chr20:32709307-32709528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 188

               
               
               Conread position:228-471
               
               
               Cow position:chr20:24834227-24833992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:228-477
               
               
               Cow position:chr20:26077220-26076975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:229-475
               
               
               Cow position:chr20:5827077-5826830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):80, 86

               
               
               Conread position:230-454
               
               
               Cow position:chr20:36040611-36040384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:232-465
               
               
               Cow position:chr20:747076-746849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:236-464
               
               
               Cow position:chr20:23541030-23541252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 46

               
               
               Conread position:237-466
               
               
               Cow position:chr20:19237204-19236981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:237-471
               
               
               Cow position:chr20:35146150-35145911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:238-409
               
               
               Cow position:chr20:21428290-21428120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:238-414
               
               
               Cow position:chr20:39613145-39613319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:238-436
               
               
               Cow position:chr20:11008298-11008103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-442
               
               
               Cow position:chr20:33976609-33976408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:238-465
               
               
               Cow position:chr20:5576903-5576672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:238-466
               
               
               Cow position:chr20:10188402-10188178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:238-471
               
               
               Cow position:chr20:23846536-23846773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 138

               
               
               Conread position:238-471
               
               
               Cow position:chr20:34221607-34221378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:238-471
               
               
               Cow position:chr20:40446457-40446229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 69

               
               
               Conread position:238-475
               
               
               Cow position:chr20:3321016-3321249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:238-475
               
               
               Cow position:chr20:11542160-11542389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):186, 66

               
               
               Conread position:238-475
               
               
               Cow position:chr20:20471911-20471680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:238-475
               
               
               Cow position:chr20:35365174-35364936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:239-413
               
               
               Cow position:chr20:6248474-6248644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:239-466
               
               
               Cow position:chr20:14100308-14100533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:239-471
               
               
               Cow position:chr20:35797736-35797507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:239-471
               
               
               Cow position:chr20:41089668-41089892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:240-460
               
               
               Cow position:chr20:15548770-15548987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:240-465
               
               
               Cow position:chr20:12430673-12430891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:241-451
               
               
               Cow position:chr20:34085193-34084983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 101

               
               
               Conread position:241-470
               
               
               Cow position:chr20:3606836-3607057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:244-464
               
               
               Cow position:chr20:34786826-34787038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:246-473
               
               
               Cow position:chr20:32523584-32523356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:246-477
               
               
               Cow position:chr20:21714881-21714643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:247-405
               
               
               Cow position:chr20:7709662-7709821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:247-443
               
               
               Cow position:chr20:17251836-17251641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:247-454
               
               
               Cow position:chr20:8098405-8098196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-466
               
               
               Cow position:chr20:4206091-4205870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:247-466
               
               
               Cow position:chr20:28804689-28804466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:247-470
               
               
               Cow position:chr20:13821461-13821683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:247-471
               
               
               Cow position:chr20:8429866-8429643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:247-471
               
               
               Cow position:chr20:21019685-21019462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:248-454
               
               
               Cow position:chr20:34596979-34597186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:250-443
               
               
               Cow position:chr20:17765215-17765404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:250-443
               
               
               Cow position:chr20:40745572-40745365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-464
               
               
               Cow position:chr20:39325507-39325294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:250-471
               
               
               Cow position:chr20:36010912-36010691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:254-466
               
               
               Cow position:chr20:5998559-5998765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:255-466
               
               
               Cow position:chr20:29404064-29404273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:256-474
               
               
               Cow position:chr20:16715502-16715290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:256-475
               
               
               Cow position:chr20:39398591-39398380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:259-464
               
               
               Cow position:chr20:19616599-19616391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-471
               
               
               Cow position:chr20:34251565-34251785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:260-471
               
               
               Cow position:chr20:35958754-35958543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:261-457
               
               
               Cow position:chr20:11135656-11135846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:264-406
               
               
               Cow position:chr20:38850713-38850572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:264-465
               
               
               Cow position:chr20:7211142-7210944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:264-466
               
               
               Cow position:chr20:19146980-19146777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:264-477
               
               
               Cow position:chr20:13795083-13794876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:264-477
               
               
               Cow position:chr20:23643036-23643249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-477
               
               
               Cow position:chr20:24000695-24000907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:265-475
               
               
               Cow position:chr20:39019797-39019584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:269-471
               
               
               Cow position:chr20:34901669-34901467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:270-466
               
               
               Cow position:chr20:21698490-21698290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:271-471
               
               
               Cow position:chr20:22704390-22704190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:274-471
               
               
               Cow position:chr20:30992234-30992037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:280-471
               
               
               Cow position:chr20:14735755-14735574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:282-441
               
               
               Cow position:chr20:9473530-9473687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:294-475
               
               
               Cow position:chr20:27003652-27003840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:298-471
               
               
               Cow position:chr20:18185635-18185467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:308-477
               
               
               Cow position:chr20:20312690-20312855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:310-443
               
               
               Cow position:chr20:37357661-37357532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:310-463
               
               
               Cow position:chr20:37272768-37272618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr20:28832024-28831866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:315-466
               
               
               Cow position:chr20:15760901-15761043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:315-477
               
               
               Cow position:chr20:29632951-29633112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:319-471
               
               
               Cow position:chr20:27340107-27339963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:320-471
               
               
               Cow position:chr20:3781380-3781528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:344-470
               
               
               Cow position:chr20:38935212-38935337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:354-465
               
               
               Cow position:chr20:11923227-11923339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:354-475
               
               
               Cow position:chr20:12334391-12334268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:358-466
               
               
               Cow position:chr20:23679136-23679245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:358-471
               
               
               Cow position:chr20:9379422-9379307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:141-454
               
               
               Cow position:chr21:12301253-12301571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 205

               
               
               Conread position:141-454
               
               
               Cow position:chr21:21181435-21181111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:144-477
               
               
               Cow position:chr21:12154399-12154048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:145-441
               
               
               Cow position:chr21:28919259-28919576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 217

               
               
               Conread position:146-453
               
               
               Cow position:chr21:47715294-47715608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:154-369
               
               
               Cow position:chr21:18135626-18135854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:154-375
               
               
               Cow position:chr21:40769527-40769305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:155-413
               
               
               Cow position:chr21:37235629-37235362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 208

               
               
               Conread position:155-465
               
               
               Cow position:chr21:46241995-46242312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):12, 162

               
               
               Conread position:155-466
               
               
               Cow position:chr21:44754547-44754849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:155-467
               
               
               Cow position:chr21:23800889-23801205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:156-466
               
               
               Cow position:chr21:49649857-49649558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:156-471
               
               
               Cow position:chr21:28810015-28810348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 197

               
               
               Conread position:158-447
               
               
               Cow position:chr21:3254391-3254093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 129

               
               
               Conread position:162-369
               
               
               Cow position:chr21:7823589-7823381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:162-465
               
               
               Cow position:chr21:31662234-31661930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:162-465
               
               
               Cow position:chr21:34564984-34565284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:163-418
               
               
               Cow position:chr21:42209392-42209659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:163-454
               
               
               Cow position:chr21:46607359-46607648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:163-457
               
               
               Cow position:chr21:297982-297684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:163-461
               
               
               Cow position:chr21:33413844-33414156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:163-465
               
               
               Cow position:chr21:17428730-17428427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 141

               
               
               Conread position:163-465
               
               
               Cow position:chr21:20418453-20418760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 182

               
               
               Conread position:163-465
               
               
               Cow position:chr21:25764869-25764563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 105

               
               
               Conread position:163-466
               
               
               Cow position:chr21:9939955-9940270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:163-466
               
               
               Cow position:chr21:23587125-23586804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:163-466
               
               
               Cow position:chr21:45356068-45355760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 187

               
               
               Conread position:163-467
               
               
               Cow position:chr21:44214364-44214047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:163-471
               
               
               Cow position:chr21:8207010-8206691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-471
               
               
               Cow position:chr21:15911631-15911318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:163-471
               
               
               Cow position:chr21:21223515-21223212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:163-471
               
               
               Cow position:chr21:37014172-37014484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 187

               
               
               Conread position:163-471
               
               
               Cow position:chr21:38901016-38900697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:163-471
               
               
               Cow position:chr21:41515028-41514723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 111

               
               
               Conread position:163-471
               
               
               Cow position:chr21:41956948-41957257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:163-475
               
               
               Cow position:chr21:3236756-3236437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:163-475
               
               
               Cow position:chr21:4099100-4098781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr21:10673363-10673041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:163-475
               
               
               Cow position:chr21:32574955-32574628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 182

               
               
               Conread position:163-475
               
               
               Cow position:chr21:33727227-33727555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-475
               
               
               Cow position:chr21:34740079-34739756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:163-475
               
               
               Cow position:chr21:38121332-38121017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:164-419
               
               
               Cow position:chr21:18064674-18064942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 204

               
               
               Conread position:164-465
               
               
               Cow position:chr21:22353004-22353306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:164-466
               
               
               Cow position:chr21:12087829-12087517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 158

               
               
               Conread position:164-471
               
               
               Cow position:chr21:5427179-5426858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 192

               
               
               Conread position:164-471
               
               
               Cow position:chr21:33996998-33997307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:164-475
               
               
               Cow position:chr21:4281631-4281962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 197

               
               
               Conread position:164-477
               
               
               Cow position:chr21:30848696-30849036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 211

               
               
               Conread position:164-477
               
               
               Cow position:chr21:46551873-46552194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:165-410
               
               
               Cow position:chr21:6388221-6387980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:165-473
               
               
               Cow position:chr21:25800627-25800312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:169-466
               
               
               Cow position:chr21:31662695-31662388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:170-471
               
               
               Cow position:chr21:3360795-3361092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:170-471
               
               
               Cow position:chr21:6051725-6051426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:170-471
               
               
               Cow position:chr21:34654291-34653996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:175-466
               
               
               Cow position:chr21:35997394-35997097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 130

               
               
               Conread position:180-461
               
               
               Cow position:chr21:23786248-23785958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 160

               
               
               Conread position:181-442
               
               
               Cow position:chr21:22014395-22014132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:187-417
               
               
               Cow position:chr21:26753701-26753469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:197-416
               
               
               Cow position:chr21:38720438-38720226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:200-453
               
               
               Cow position:chr21:45329763-45330012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):201, 112

               
               
               Conread position:200-471
               
               
               Cow position:chr21:3585181-3585444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):109, 137

               
               
               Conread position:200-471
               
               
               Cow position:chr21:10633455-10633722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:204-471
               
               
               Cow position:chr21:24888183-24887931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:205-466
               
               
               Cow position:chr21:10561402-10561660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:208-474
               
               
               Cow position:chr21:32559186-32559444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 101

               
               
               Conread position:210-454
               
               
               Cow position:chr21:8125629-8125863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:210-465
               
               
               Cow position:chr21:23980005-23980257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 130

               
               
               Conread position:212-415
               
               
               Cow position:chr21:40192130-40192326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:212-451
               
               
               Cow position:chr21:11779367-11779592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):212, 54

               
               
               Conread position:212-461
               
               
               Cow position:chr21:1511464-1511220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 82

               
               
               Conread position:212-466
               
               
               Cow position:chr21:20262160-20262409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:212-466
               
               
               Cow position:chr21:37344926-37345177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:212-474
               
               
               Cow position:chr21:23672920-23672669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-477
               
               
               Cow position:chr21:18844836-18845103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:213-399
               
               
               Cow position:chr21:7768612-7768425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-419
               
               
               Cow position:chr21:734763-734567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:213-426
               
               
               Cow position:chr21:28030462-28030253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-431
               
               
               Cow position:chr21:10538081-10538291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-435
               
               
               Cow position:chr21:29014737-29014959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-443
               
               
               Cow position:chr21:17890476-17890249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr21:47713836-47714057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:213-446
               
               
               Cow position:chr21:868750-868982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-454
               
               
               Cow position:chr21:15544055-15544283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-455
               
               
               Cow position:chr21:17193575-17193819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 121

               
               
               Conread position:213-460
               
               
               Cow position:chr21:28244644-28244399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr21:41974204-41974446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):214, 92

               
               
               Conread position:213-461
               
               
               Cow position:chr21:45920885-45921130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-464
               
               
               Cow position:chr21:6713349-6713599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 136

               
               
               Conread position:213-464
               
               
               Cow position:chr21:27229621-27229868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-464
               
               
               Cow position:chr21:42413923-42414174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:213-465
               
               
               Cow position:chr21:33893-33645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr21:42501224-42500962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr21:713117-712852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 247

               
               
               Conread position:213-466
               
               
               Cow position:chr21:3763569-3763819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:213-466
               
               
               Cow position:chr21:3818382-3818131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:213-466
               
               
               Cow position:chr21:6998121-6997862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-466
               
               
               Cow position:chr21:11739946-11740192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:213-466
               
               
               Cow position:chr21:17184091-17183844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):211, 99

               
               
               Conread position:213-466
               
               
               Cow position:chr21:20160850-20160607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr21:22718610-22718855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr21:27863340-27863592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-466
               
               
               Cow position:chr21:28237534-28237790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:213-466
               
               
               Cow position:chr21:29978586-29978832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr21:36795777-36795524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:213-466
               
               
               Cow position:chr21:44251669-44251911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-467
               
               
               Cow position:chr21:8235388-8235630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr21:396041-395789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr21:957844-957591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr21:6834223-6833967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr21:7581731-7581987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr21:9416424-9416165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr21:10004712-10004966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr21:13127925-13128175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr21:18790392-18790641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:213-471
               
               
               Cow position:chr21:23321904-23322161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-471
               
               
               Cow position:chr21:29069152-29069410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr21:29485152-29484898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr21:32339566-32339819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr21:34010224-34010477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-473
               
               
               Cow position:chr21:5898228-5898482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:213-473
               
               
               Cow position:chr21:26245088-26244835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-474
               
               
               Cow position:chr21:25383200-25382927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 253

               
               
               Conread position:213-475
               
               
               Cow position:chr21:47214-46952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-475
               
               
               Cow position:chr21:10001249-10000989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr21:10264206-10263946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-475
               
               
               Cow position:chr21:21169322-21169581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 82

               
               
               Conread position:213-475
               
               
               Cow position:chr21:25628738-25628998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr21:42007288-42007554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-477
               
               
               Cow position:chr21:641761-641494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr21:10410396-10410132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-477
               
               
               Cow position:chr21:14760739-14760486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):211, 90

               
               
               Conread position:214-448
               
               
               Cow position:chr21:23568401-23568161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:214-466
               
               
               Cow position:chr21:28191205-28190956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:214-466
               
               
               Cow position:chr21:28924282-28924038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:214-467
               
               
               Cow position:chr21:18779803-18780050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):153, 92

               
               
               Conread position:214-470
               
               
               Cow position:chr21:41579929-41579671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:214-471
               
               
               Cow position:chr21:40589309-40589560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:214-477
               
               
               Cow position:chr21:37706242-37706502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:215-466
               
               
               Cow position:chr21:28733741-28733988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):105, 121

               
               
               Conread position:215-471
               
               
               Cow position:chr21:1591730-1591471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:215-471
               
               
               Cow position:chr21:26647844-26648088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):220, 16

               
               
               Conread position:215-475
               
               
               Cow position:chr21:46848956-46849213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:216-471
               
               
               Cow position:chr21:4399974-4399716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 112

               
               
               Conread position:216-471
               
               
               Cow position:chr21:28989784-28989533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:216-471
               
               
               Cow position:chr21:33264014-33263768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:217-477
               
               
               Cow position:chr21:16914948-16914683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:218-429
               
               
               Cow position:chr21:471853-471637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:218-466
               
               
               Cow position:chr21:19258986-19258753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-466
               
               
               Cow position:chr21:35354702-35354457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:219-466
               
               
               Cow position:chr21:36910098-36909858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-475
               
               
               Cow position:chr21:10514979-10514720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:220-404
               
               
               Cow position:chr21:9862398-9862582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:221-435
               
               
               Cow position:chr21:21907269-21907475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-439
               
               
               Cow position:chr21:30231523-30231741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:221-461
               
               
               Cow position:chr21:38449284-38449518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr21:1059240-1059002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr21:12801582-12801822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr21:24642688-24642443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:221-466
               
               
               Cow position:chr21:2927029-2927281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:221-466
               
               
               Cow position:chr21:13584896-13585145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr21:28993455-28993698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:221-466
               
               
               Cow position:chr21:29213995-29214227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 6

               
               
               Conread position:221-466
               
               
               Cow position:chr21:30835528-30835286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr21:14452399-14452155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr21:27145828-27146072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:221-471
               
               
               Cow position:chr21:30236669-30236898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:221-471
               
               
               Cow position:chr21:39401758-39401513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:221-471
               
               
               Cow position:chr21:41107605-41107843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr21:42135451-42135701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-472
               
               
               Cow position:chr21:30256098-30256351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:221-474
               
               
               Cow position:chr21:45971009-45971257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:221-475
               
               
               Cow position:chr21:643489-643243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr21:11360202-11359951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:221-475
               
               
               Cow position:chr21:30606920-30607178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:221-476
               
               
               Cow position:chr21:47763953-47764201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr21:5392370-5392631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr21:28626402-28626153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr21:30222510-30222257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr21:33982645-33982893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr21:41621290-41621036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:222-470
               
               
               Cow position:chr21:19196000-19196243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:222-475
               
               
               Cow position:chr21:18850059-18850316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:223-452
               
               
               Cow position:chr21:23397685-23397908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:223-471
               
               
               Cow position:chr21:39403361-39403618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 242

               
               
               Conread position:226-443
               
               
               Cow position:chr21:976987-977198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:228-466
               
               
               Cow position:chr21:13365501-13365262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:228-470
               
               
               Cow position:chr21:45473599-45473837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr21:31253692-31253462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):197, 82

               
               
               Conread position:229-443
               
               
               Cow position:chr21:5464906-5464693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:229-466
               
               
               Cow position:chr21:42384666-42384433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:229-471
               
               
               Cow position:chr21:12461808-12462051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:229-473
               
               
               Cow position:chr21:11644808-11645053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:229-477
               
               
               Cow position:chr21:15976790-15976545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:229-477
               
               
               Cow position:chr21:45262652-45262899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:230-455
               
               
               Cow position:chr21:41140561-41140784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:230-471
               
               
               Cow position:chr21:4998338-4998568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 90

               
               
               Conread position:231-471
               
               
               Cow position:chr21:20153111-20152866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:233-454
               
               
               Cow position:chr21:17929683-17929907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 99

               
               
               Conread position:234-471
               
               
               Cow position:chr21:43357103-43357342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):83, 74

               
               
               Conread position:235-464
               
               
               Cow position:chr21:40432597-40432375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:237-471
               
               
               Cow position:chr21:20260169-20260402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:237-471
               
               
               Cow position:chr21:23535859-23535632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:237-471
               
               
               Cow position:chr21:34390825-34391056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:238-461
               
               
               Cow position:chr21:40266270-40266050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):186, 72

               
               
               Conread position:238-466
               
               
               Cow position:chr21:22861150-22860923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:238-466
               
               
               Cow position:chr21:41878618-41878395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:238-466
               
               
               Cow position:chr21:42841448-42841674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-466
               
               
               Cow position:chr21:45330458-45330680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):186, 65

               
               
               Conread position:238-466
               
               
               Cow position:chr21:45915569-45915783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:238-471
               
               
               Cow position:chr21:22210097-22210325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr21:34151734-34151499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:238-474
               
               
               Cow position:chr21:10114185-10114418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:238-475
               
               
               Cow position:chr21:19363311-19363550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:238-477
               
               
               Cow position:chr21:32904006-32904247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:239-466
               
               
               Cow position:chr21:18800386-18800605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:239-477
               
               
               Cow position:chr21:10151953-10151704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-448
               
               
               Cow position:chr21:11251016-11250820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:240-467
               
               
               Cow position:chr21:2260219-2260438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:240-471
               
               
               Cow position:chr21:40168479-40168711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:242-475
               
               
               Cow position:chr21:36789940-36789707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:243-442
               
               
               Cow position:chr21:46144103-46143905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:243-471
               
               
               Cow position:chr21:17875049-17875273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:243-475
               
               
               Cow position:chr21:20193038-20192812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:244-471
               
               
               Cow position:chr21:29002010-29002239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:247-460
               
               
               Cow position:chr21:18155426-18155641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:247-465
               
               
               Cow position:chr21:7394522-7394304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:247-475
               
               
               Cow position:chr21:32237419-32237207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 42

               
               
               Conread position:248-444
               
               
               Cow position:chr21:9302287-9302482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:248-460
               
               
               Cow position:chr21:13048054-13048267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-464
               
               
               Cow position:chr21:37789860-37790076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-470
               
               
               Cow position:chr21:10007500-10007718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:250-442
               
               
               Cow position:chr21:7377789-7377982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-443
               
               
               Cow position:chr21:47363597-47363792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:250-460
               
               
               Cow position:chr21:9697943-9698156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-464
               
               
               Cow position:chr21:17009118-17008907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-465
               
               
               Cow position:chr21:15584282-15584494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr21:25127741-25127520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:250-473
               
               
               Cow position:chr21:46141185-46140958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:251-465
               
               
               Cow position:chr21:724749-724961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:251-477
               
               
               Cow position:chr21:44515400-44515176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:253-471
               
               
               Cow position:chr21:10601241-10601455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:255-471
               
               
               Cow position:chr21:24222405-24222619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:257-477
               
               
               Cow position:chr21:6017755-6017528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:259-460
               
               
               Cow position:chr21:22856346-22856148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:259-471
               
               
               Cow position:chr21:49699912-49700117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:259-475
               
               
               Cow position:chr21:13488655-13488433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:259-475
               
               
               Cow position:chr21:16152569-16152346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:260-471
               
               
               Cow position:chr21:36162832-36163044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:263-454
               
               
               Cow position:chr21:48263258-48263057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:263-471
               
               
               Cow position:chr21:11456685-11456894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:264-466
               
               
               Cow position:chr21:18289786-18289588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-471
               
               
               Cow position:chr21:5636597-5636799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:265-471
               
               
               Cow position:chr21:18415174-18414969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:265-477
               
               
               Cow position:chr21:10727399-10727190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:267-471
               
               
               Cow position:chr21:13840447-13840241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:268-466
               
               
               Cow position:chr21:10118678-10118481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:269-471
               
               
               Cow position:chr21:13898305-13898103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:269-475
               
               
               Cow position:chr21:36756717-36756513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:272-465
               
               
               Cow position:chr21:46829157-46829345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:280-465
               
               
               Cow position:chr21:18041740-18041923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:281-443
               
               
               Cow position:chr21:5612214-5612055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:284-471
               
               
               Cow position:chr21:3380975-3381166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:290-466
               
               
               Cow position:chr21:33359940-33360110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:290-473
               
               
               Cow position:chr21:5344763-5344570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:290-475
               
               
               Cow position:chr21:6102164-6102346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:297-465
               
               
               Cow position:chr21:20925415-20925582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:307-466
               
               
               Cow position:chr21:21077405-21077250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:308-474
               
               
               Cow position:chr21:8985630-8985460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:309-471
               
               
               Cow position:chr21:2785699-2785857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:310-466
               
               
               Cow position:chr21:28617665-28617511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:313-471
               
               
               Cow position:chr21:42913672-42913825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:314-473
               
               
               Cow position:chr21:36793965-36793804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:315-466
               
               
               Cow position:chr21:27743818-27743667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:315-471
               
               
               Cow position:chr21:9979901-9980045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:319-464
               
               
               Cow position:chr21:39809959-39809822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:320-466
               
               
               Cow position:chr21:18495036-18494893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:337-465
               
               
               Cow position:chr21:4568335-4568210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:342-471
               
               
               Cow position:chr21:911919-912048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:345-475
               
               
               Cow position:chr21:37361432-37361562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:127-442
               
               
               Cow position:chr22:1911874-1911550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):22, 229

               
               
               Conread position:139-477
               
               
               Cow position:chr22:26183972-26184317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:142-470
               
               
               Cow position:chr22:23009755-23010085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 183

               
               
               Conread position:142-475
               
               
               Cow position:chr22:7885174-7884834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 202

               
               
               Conread position:143-466
               
               
               Cow position:chr22:23580657-23580979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 174

               
               
               Conread position:146-343
               
               
               Cow position:chr22:18339755-18339963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:150-466
               
               
               Cow position:chr22:8397646-8397958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 165

               
               
               Conread position:154-443
               
               
               Cow position:chr22:41389283-41388990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:155-395
               
               
               Cow position:chr22:13734862-13735087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):154, 56

               
               
               Conread position:155-464
               
               
               Cow position:chr22:7301666-7301980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:155-470
               
               
               Cow position:chr22:42945877-42946203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:155-471
               
               
               Cow position:chr22:25629621-25629911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):155, 51

               
               
               Conread position:155-473
               
               
               Cow position:chr22:13300582-13300261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:156-454
               
               
               Cow position:chr22:2524143-2523832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 201

               
               
               Conread position:157-466
               
               
               Cow position:chr22:15358419-15358100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 196

               
               
               Conread position:163-315
               
               
               Cow position:chr22:29227749-29227895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):146, 54

               
               
               Conread position:163-331
               
               
               Cow position:chr22:4026985-4026810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 164

               
               
               Conread position:163-350
               
               
               Cow position:chr22:17184518-17184716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:163-373
               
               
               Cow position:chr22:28685493-28685279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-415
               
               
               Cow position:chr22:27508827-27508553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 271

               
               
               Conread position:163-418
               
               
               Cow position:chr22:5927797-5928056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:163-442
               
               
               Cow position:chr22:42685068-42684787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:163-443
               
               
               Cow position:chr22:4135779-4135497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:163-448
               
               
               Cow position:chr22:5467179-5467495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:163-457
               
               
               Cow position:chr22:22029212-22029510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:163-461
               
               
               Cow position:chr22:5622556-5622856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:163-465
               
               
               Cow position:chr22:16650055-16650341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):146, 42

               
               
               Conread position:163-465
               
               
               Cow position:chr22:34736034-34735726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:163-465
               
               
               Cow position:chr22:45271759-45271440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 198

               
               
               Conread position:163-466
               
               
               Cow position:chr22:5384820-5384508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:163-466
               
               
               Cow position:chr22:13769638-13769331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:163-466
               
               
               Cow position:chr22:30699351-30699036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 192

               
               
               Conread position:163-466
               
               
               Cow position:chr22:41245417-41245102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:163-469
               
               
               Cow position:chr22:15914566-15914866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-471
               
               
               Cow position:chr22:3960114-3960437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):59, 180

               
               
               Conread position:163-471
               
               
               Cow position:chr22:14844730-14844426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:163-471
               
               
               Cow position:chr22:25742780-25743099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:163-475
               
               
               Cow position:chr22:8090349-8090681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:163-477
               
               
               Cow position:chr22:25943645-25943321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 182

               
               
               Conread position:163-477
               
               
               Cow position:chr22:30471512-30471843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 197

               
               
               Conread position:164-320
               
               
               Cow position:chr22:4563956-4564113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:164-410
               
               
               Cow position:chr22:34675686-34675434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 141

               
               
               Conread position:164-438
               
               
               Cow position:chr22:38320522-38320794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 184

               
               
               Conread position:164-453
               
               
               Cow position:chr22:27224293-27223998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:164-461
               
               
               Cow position:chr22:29441098-29441392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 143

               
               
               Conread position:164-461
               
               
               Cow position:chr22:30572997-30573295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:164-461
               
               
               Cow position:chr22:33386344-33386642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:164-466
               
               
               Cow position:chr22:19738422-19738717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:164-471
               
               
               Cow position:chr22:25477213-25476915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):55, 154

               
               
               Conread position:164-475
               
               
               Cow position:chr22:139146-139461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:164-475
               
               
               Cow position:chr22:644596-644918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:164-475
               
               
               Cow position:chr22:19047647-19047970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:165-340
               
               
               Cow position:chr22:33592268-33592453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 179

               
               
               Conread position:165-466
               
               
               Cow position:chr22:15668299-15668617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 147

               
               
               Conread position:165-471
               
               
               Cow position:chr22:534673-534349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):51, 190

               
               
               Conread position:165-475
               
               
               Cow position:chr22:42612625-42612304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:165-477
               
               
               Cow position:chr22:11458963-11458673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):149, 46

               
               
               Conread position:165-477
               
               
               Cow position:chr22:29954832-29955152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 138

               
               
               Conread position:166-445
               
               
               Cow position:chr22:21349355-21349638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 174

               
               
               Conread position:167-466
               
               
               Cow position:chr22:590501-590196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 188

               
               
               Conread position:167-471
               
               
               Cow position:chr22:34398307-34398606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):142, 58

               
               
               Conread position:167-471
               
               
               Cow position:chr22:38939770-38940097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:167-474
               
               
               Cow position:chr22:2913440-2913126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 51

               
               
               Conread position:169-389
               
               
               Cow position:chr22:28672315-28672078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 187

               
               
               Conread position:169-464
               
               
               Cow position:chr22:6574906-6574597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:169-464
               
               
               Cow position:chr22:20862584-20862902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):48, 233

               
               
               Conread position:169-465
               
               
               Cow position:chr22:15090895-15090598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:170-465
               
               
               Cow position:chr22:4651340-4651039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 167

               
               
               Conread position:175-465
               
               
               Cow position:chr22:40349490-40349208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:181-398
               
               
               Cow position:chr22:14755159-14754925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:185-473
               
               
               Cow position:chr22:5337453-5337751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 164

               
               
               Conread position:187-466
               
               
               Cow position:chr22:18218766-18219033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:192-443
               
               
               Cow position:chr22:5837397-5837147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:199-470
               
               
               Cow position:chr22:7102964-7102685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:201-466
               
               
               Cow position:chr22:41684167-41684428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:205-461
               
               
               Cow position:chr22:39293618-39293883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:206-433
               
               
               Cow position:chr22:18838368-18838139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:208-475
               
               
               Cow position:chr22:3965298-3965032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):102, 127

               
               
               Conread position:210-452
               
               
               Cow position:chr22:14372280-14372053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):214, 93

               
               
               Conread position:212-444
               
               
               Cow position:chr22:14143003-14143234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:212-454
               
               
               Cow position:chr22:27581547-27581305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):97, 44

               
               
               Conread position:212-466
               
               
               Cow position:chr22:38980994-38980755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:212-471
               
               
               Cow position:chr22:40120763-40121026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:213-397
               
               
               Cow position:chr22:35029375-35029191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-408
               
               
               Cow position:chr22:10553578-10553770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-409
               
               
               Cow position:chr22:12678315-12678506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-411
               
               
               Cow position:chr22:26123004-26122809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-417
               
               
               Cow position:chr22:3842724-3842524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:213-419
               
               
               Cow position:chr22:9597473-9597676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:213-419
               
               
               Cow position:chr22:26075028-26074826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-422
               
               
               Cow position:chr22:14006284-14006080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:213-435
               
               
               Cow position:chr22:6852477-6852696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:213-435
               
               
               Cow position:chr22:23750790-23751006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 73

               
               
               Conread position:213-438
               
               
               Cow position:chr22:6936363-6936149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:213-440
               
               
               Cow position:chr22:13222224-13221993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:213-440
               
               
               Cow position:chr22:39215508-39215733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:213-443
               
               
               Cow position:chr22:2627687-2627454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:213-443
               
               
               Cow position:chr22:12389206-12388976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-443
               
               
               Cow position:chr22:16621288-16621055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:213-443
               
               
               Cow position:chr22:24175789-24176002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:213-443
               
               
               Cow position:chr22:27828485-27828263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-443
               
               
               Cow position:chr22:43237301-43237528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-443
               
               
               Cow position:chr22:47555955-47555730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-444
               
               
               Cow position:chr22:4075779-4076011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr22:9372628-9372397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr22:10962855-10963079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-451
               
               
               Cow position:chr22:23806434-23806671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 147

               
               
               Conread position:213-451
               
               
               Cow position:chr22:28057943-28058182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr22:12967962-12968203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr22:27681828-27681583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-458
               
               
               Cow position:chr22:1849181-1848935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-459
               
               
               Cow position:chr22:10303123-10302878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-459
               
               
               Cow position:chr22:45513422-45513651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):211, 68

               
               
               Conread position:213-463
               
               
               Cow position:chr22:13286555-13286310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-464
               
               
               Cow position:chr22:14178720-14178967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-464
               
               
               Cow position:chr22:14690864-14691113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-464
               
               
               Cow position:chr22:22155710-22155464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:213-465
               
               
               Cow position:chr22:12315917-12315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:213-465
               
               
               Cow position:chr22:12573311-12573066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 79

               
               
               Conread position:213-465
               
               
               Cow position:chr22:12803278-12803527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:213-465
               
               
               Cow position:chr22:18126628-18126878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:213-465
               
               
               Cow position:chr22:25540106-25539849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-465
               
               
               Cow position:chr22:28665390-28665143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-465
               
               
               Cow position:chr22:30269515-30269271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-466
               
               
               Cow position:chr22:3534040-3533801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):98, 89

               
               
               Conread position:213-466
               
               
               Cow position:chr22:8115981-8116230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr22:10339012-10339256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr22:12313531-12313280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr22:15490761-15490516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 130

               
               
               Conread position:213-466
               
               
               Cow position:chr22:18926463-18926212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr22:32661616-32661362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:213-467
               
               
               Cow position:chr22:41971046-41971301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:213-471
               
               
               Cow position:chr22:7852071-7851815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr22:10684984-10685236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr22:11130977-11130722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr22:13841246-13840986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr22:16044309-16044569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr22:17294829-17295078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-471
               
               
               Cow position:chr22:17814339-17814076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr22:21890253-21890504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:213-471
               
               
               Cow position:chr22:23176334-23176589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr22:23857153-23856901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr22:24610987-24611228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr22:25387434-25387172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr22:26659149-26658907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr22:27274593-27274838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr22:30049459-30049717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr22:30818319-30818063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr22:32895325-32895069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:213-471
               
               
               Cow position:chr22:33399382-33399629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:213-471
               
               
               Cow position:chr22:34606697-34606435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 34

               
               
               Conread position:213-471
               
               
               Cow position:chr22:40072084-40071833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr22:40387261-40387011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 121

               
               
               Conread position:213-471
               
               
               Cow position:chr22:45846248-45845998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-473
               
               
               Cow position:chr22:22860805-22861059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-474
               
               
               Cow position:chr22:24915944-24915685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:213-475
               
               
               Cow position:chr22:877622-877358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr22:4563470-4563205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:213-475
               
               
               Cow position:chr22:8883118-8882866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-475
               
               
               Cow position:chr22:15025003-15025262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr22:21295618-21295879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:213-475
               
               
               Cow position:chr22:21530252-21530508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:213-475
               
               
               Cow position:chr22:34895071-34894819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-476
               
               
               Cow position:chr22:14924625-14924887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr22:3950359-3950095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-477
               
               
               Cow position:chr22:20626945-20626682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-477
               
               
               Cow position:chr22:22023008-22022731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 192

               
               
               Conread position:213-477
               
               
               Cow position:chr22:23121895-23122177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-477
               
               
               Cow position:chr22:32188747-32189003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-477
               
               
               Cow position:chr22:37029501-37029753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:214-395
               
               
               Cow position:chr22:28704290-28704112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:214-475
               
               
               Cow position:chr22:26141380-26141119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:215-435
               
               
               Cow position:chr22:13094507-13094285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:215-439
               
               
               Cow position:chr22:12829506-12829728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-471
               
               
               Cow position:chr22:9283494-9283746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:215-471
               
               
               Cow position:chr22:24628554-24628798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:215-475
               
               
               Cow position:chr22:44180698-44180440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-477
               
               
               Cow position:chr22:26969894-26969627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:216-465
               
               
               Cow position:chr22:22997579-22997336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:216-466
               
               
               Cow position:chr22:2912486-2912725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:218-444
               
               
               Cow position:chr22:18293664-18293883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:218-460
               
               
               Cow position:chr22:27328792-27329029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:218-464
               
               
               Cow position:chr22:2623418-2623660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr22:17152779-17152533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:219-437
               
               
               Cow position:chr22:46567794-46568003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-464
               
               
               Cow position:chr22:4060847-4061087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr22:11766950-11767193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-471
               
               
               Cow position:chr22:46610681-46610928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-475
               
               
               Cow position:chr22:31592756-31593013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:220-351
               
               
               Cow position:chr22:18847862-18847995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:220-443
               
               
               Cow position:chr22:10919753-10919974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:220-477
               
               
               Cow position:chr22:28371046-28370791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:221-459
               
               
               Cow position:chr22:16823199-16822967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:221-464
               
               
               Cow position:chr22:31154052-31153815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:221-465
               
               
               Cow position:chr22:15950288-15950521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr22:28071656-28071416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr22:1309636-1309871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr22:3325686-3325442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr22:4017571-4017334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr22:10162065-10161822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr22:10315174-10314932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr22:27322419-27322173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:221-466
               
               
               Cow position:chr22:28351560-28351794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:221-467
               
               
               Cow position:chr22:40048652-40048412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr22:846001-845754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr22:7967800-7967553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:221-471
               
               
               Cow position:chr22:9127506-9127258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr22:11613522-11613276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr22:14638379-14638629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr22:33447983-33448232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr22:44717819-44717565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr22:7153982-7153729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:221-475
               
               
               Cow position:chr22:24066135-24066391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:221-477
               
               
               Cow position:chr22:21355043-21355300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr22:36562921-36563177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:222-464
               
               
               Cow position:chr22:24734220-24734453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:223-438
               
               
               Cow position:chr22:12892269-12892482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:223-471
               
               
               Cow position:chr22:30484011-30483769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):86, 5

               
               
               Conread position:225-477
               
               
               Cow position:chr22:34726769-34726517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:226-457
               
               
               Cow position:chr22:13188245-13188024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:228-464
               
               
               Cow position:chr22:16251481-16251706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 64

               
               
               Conread position:228-466
               
               
               Cow position:chr22:10633006-10632776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:228-471
               
               
               Cow position:chr22:27047321-27047549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):214, 66

               
               
               Conread position:228-475
               
               
               Cow position:chr22:34750765-34750526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:228-477
               
               
               Cow position:chr22:8412620-8412373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:229-449
               
               
               Cow position:chr22:12341287-12341066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 54

               
               
               Conread position:229-454
               
               
               Cow position:chr22:4119471-4119697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 80

               
               
               Conread position:229-461
               
               
               Cow position:chr22:38439066-38439292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:229-465
               
               
               Cow position:chr22:4535238-4535466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:229-471
               
               
               Cow position:chr22:15398489-15398726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:230-451
               
               
               Cow position:chr22:12929190-12929404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:230-466
               
               
               Cow position:chr22:27819091-27818856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:231-475
               
               
               Cow position:chr22:22223276-22223039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:237-466
               
               
               Cow position:chr22:5290933-5290703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:237-466
               
               
               Cow position:chr22:16291841-16292060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:238-432
               
               
               Cow position:chr22:29344960-29344771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:238-444
               
               
               Cow position:chr22:23833378-23833168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:238-448
               
               
               Cow position:chr22:1326501-1326292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:238-464
               
               
               Cow position:chr22:27835615-27835389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:238-465
               
               
               Cow position:chr22:37324624-37324404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:238-466
               
               
               Cow position:chr22:11257666-11257878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:238-466
               
               
               Cow position:chr22:11778528-11778754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr22:25221816-25222042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:238-466
               
               
               Cow position:chr22:30515339-30515109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:238-469
               
               
               Cow position:chr22:34712808-34712571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:238-470
               
               
               Cow position:chr22:23804896-23805129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:238-471
               
               
               Cow position:chr22:1975691-1975464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:238-471
               
               
               Cow position:chr22:6327687-6327914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:238-471
               
               
               Cow position:chr22:22160808-22160576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:238-471
               
               
               Cow position:chr22:26339836-26339608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr22:37201931-37201705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr22:43291820-43292045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:238-475
               
               
               Cow position:chr22:6096935-6097182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:238-475
               
               
               Cow position:chr22:19775352-19775583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:238-477
               
               
               Cow position:chr22:18196592-18196356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:240-466
               
               
               Cow position:chr22:912177-911955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:240-466
               
               
               Cow position:chr22:1265844-1266073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:240-471
               
               
               Cow position:chr22:1279305-1279536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:241-466
               
               
               Cow position:chr22:13670088-13670317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:242-475
               
               
               Cow position:chr22:16533152-16532923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:243-476
               
               
               Cow position:chr22:40789643-40789415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:243-477
               
               
               Cow position:chr22:36560582-36560816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:246-466
               
               
               Cow position:chr22:40374683-40374463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:247-446
               
               
               Cow position:chr22:13849380-13849570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:247-465
               
               
               Cow position:chr22:42605710-42605486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 215

               
               
               Conread position:247-466
               
               
               Cow position:chr22:4583635-4583414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:247-471
               
               
               Cow position:chr22:6215483-6215705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-471
               
               
               Cow position:chr22:17992958-17993180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:247-473
               
               
               Cow position:chr22:30964201-30963971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:247-475
               
               
               Cow position:chr22:3241630-3241853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):173, 48

               
               
               Conread position:247-475
               
               
               Cow position:chr22:3301266-3301476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-475
               
               
               Cow position:chr22:25237066-25237304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:247-475
               
               
               Cow position:chr22:41829167-41829384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:247-475
               
               
               Cow position:chr22:43131485-43131705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:248-454
               
               
               Cow position:chr22:27825912-27825704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:248-461
               
               
               Cow position:chr22:16053379-16053171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 71

               
               
               Conread position:249-460
               
               
               Cow position:chr22:16273711-16273497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:249-466
               
               
               Cow position:chr22:7838661-7838451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:250-449
               
               
               Cow position:chr22:30111569-30111367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:250-460
               
               
               Cow position:chr22:9668646-9668428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 214

               
               
               Conread position:250-465
               
               
               Cow position:chr22:12800741-12800521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:250-465
               
               
               Cow position:chr22:17125652-17125439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:250-465
               
               
               Cow position:chr22:23855042-23854832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:250-471
               
               
               Cow position:chr22:1484933-1484714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr22:4645843-4645625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:250-471
               
               
               Cow position:chr22:15760432-15760221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):192, 57

               
               
               Conread position:250-471
               
               
               Cow position:chr22:26134154-26134379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 122

               
               
               Conread position:250-471
               
               
               Cow position:chr22:34475930-34476156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr22:38930437-38930658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:250-472
               
               
               Cow position:chr22:27740960-27740743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:251-444
               
               
               Cow position:chr22:10609427-10609232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:251-454
               
               
               Cow position:chr22:18933647-18933852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:254-475
               
               
               Cow position:chr22:19652917-19653140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:256-471
               
               
               Cow position:chr22:34441569-34441779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:257-454
               
               
               Cow position:chr22:21568060-21567863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:259-452
               
               
               Cow position:chr22:17193451-17193257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:259-467
               
               
               Cow position:chr22:21325672-21325878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:259-471
               
               
               Cow position:chr22:4990106-4990316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:259-471
               
               
               Cow position:chr22:10983411-10983200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:259-475
               
               
               Cow position:chr22:1874754-1874536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:259-475
               
               
               Cow position:chr22:15154062-15153846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-475
               
               
               Cow position:chr22:26097559-26097772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:264-443
               
               
               Cow position:chr22:27619790-27619609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:264-466
               
               
               Cow position:chr22:10421088-10420888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):46, 98

               
               
               Conread position:264-475
               
               
               Cow position:chr22:6622191-6622397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:266-465
               
               
               Cow position:chr22:11745850-11746045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:266-471
               
               
               Cow position:chr22:10677937-10678132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:267-469
               
               
               Cow position:chr22:32480427-32480625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:269-471
               
               
               Cow position:chr22:23403595-23403795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:270-466
               
               
               Cow position:chr22:30710455-30710253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:281-471
               
               
               Cow position:chr22:22553201-22553383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:287-471
               
               
               Cow position:chr22:10585670-10585849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:299-471
               
               
               Cow position:chr22:10292988-10292814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:305-466
               
               
               Cow position:chr22:25342028-25341877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:308-466
               
               
               Cow position:chr22:26506713-26506867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:308-473
               
               
               Cow position:chr22:6360475-6360641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:310-471
               
               
               Cow position:chr22:12599094-12598939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr22:22146240-22146083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:315-471
               
               
               Cow position:chr22:28731679-28731527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:321-465
               
               
               Cow position:chr22:26107055-26106916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:323-475
               
               
               Cow position:chr22:26123331-26123484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:337-464
               
               
               Cow position:chr22:1081489-1081364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:345-466
               
               
               Cow position:chr22:19848417-19848538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:347-465
               
               
               Cow position:chr22:14601480-14601362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:348-469
               
               
               Cow position:chr22:25764508-25764630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:358-466
               
               
               Cow position:chr22:4026571-4026464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:358-477
               
               
               Cow position:chr22:30473012-30472886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:138-466
               
               
               Cow position:chr23:40781530-40781188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 164

               
               
               Conread position:155-454
               
               
               Cow position:chr23:9226475-9226147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:155-461
               
               
               Cow position:chr23:5732737-5732417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:155-466
               
               
               Cow position:chr23:15286951-15287268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):64, 198

               
               
               Conread position:155-471
               
               
               Cow position:chr23:24983990-24984313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:155-475
               
               
               Cow position:chr23:37223892-37224216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:158-464
               
               
               Cow position:chr23:21660117-21659807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:158-465
               
               
               Cow position:chr23:5389877-5389567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:163-340
               
               
               Cow position:chr23:23904154-23904346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:163-406
               
               
               Cow position:chr23:11750961-11751208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:163-409
               
               
               Cow position:chr23:35155547-35155292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 184

               
               
               Conread position:163-416
               
               
               Cow position:chr23:3909716-3909974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 171

               
               
               Conread position:163-435
               
               
               Cow position:chr23:17484665-17484954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:163-451
               
               
               Cow position:chr23:1438470-1438173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:163-454
               
               
               Cow position:chr23:22396264-22396572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:163-464
               
               
               Cow position:chr23:20996629-20996330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:163-466
               
               
               Cow position:chr23:22530245-22530552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:163-471
               
               
               Cow position:chr23:18322256-18322559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:163-471
               
               
               Cow position:chr23:21765090-21764775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:163-471
               
               
               Cow position:chr23:29345585-29345899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:163-475
               
               
               Cow position:chr23:2055852-2055559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):148, 54

               
               
               Conread position:164-369
               
               
               Cow position:chr23:30655660-30655852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:164-454
               
               
               Cow position:chr23:20388475-20388770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:164-471
               
               
               Cow position:chr23:29243123-29242807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 160

               
               
               Conread position:164-475
               
               
               Cow position:chr23:19774939-19774622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:164-477
               
               
               Cow position:chr23:13359998-13359662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:165-465
               
               
               Cow position:chr23:36309576-36309284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 53

               
               
               Conread position:165-471
               
               
               Cow position:chr23:5603107-5603418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 189

               
               
               Conread position:165-471
               
               
               Cow position:chr23:35177492-35177177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 181

               
               
               Conread position:165-475
               
               
               Cow position:chr23:791865-792180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:165-475
               
               
               Cow position:chr23:20171752-20171426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 182

               
               
               Conread position:166-458
               
               
               Cow position:chr23:40790154-40789847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 205

               
               
               Conread position:166-466
               
               
               Cow position:chr23:19001898-19002204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:167-456
               
               
               Cow position:chr23:40891532-40891231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 187

               
               
               Conread position:167-465
               
               
               Cow position:chr23:15872526-15872834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:167-473
               
               
               Cow position:chr23:26051208-26050891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:170-473
               
               
               Cow position:chr23:12363459-12363763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:172-465
               
               
               Cow position:chr23:40651308-40651599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:175-475
               
               
               Cow position:chr23:33570286-33569987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:187-416
               
               
               Cow position:chr23:17000854-17000620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:187-466
               
               
               Cow position:chr23:15709932-15710216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:192-409
               
               
               Cow position:chr23:283259-283474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 160

               
               
               Conread position:195-477
               
               
               Cow position:chr23:20434934-20435201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:197-475
               
               
               Cow position:chr23:4528750-4529030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:200-466
               
               
               Cow position:chr23:6244472-6244721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 6

               
               
               Conread position:200-471
               
               
               Cow position:chr23:4563013-4562742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:203-463
               
               
               Cow position:chr23:27290658-27290909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:203-471
               
               
               Cow position:chr23:3262376-3262639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:205-471
               
               
               Cow position:chr23:27563573-27563852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 153

               
               
               Conread position:209-475
               
               
               Cow position:chr23:36075694-36075969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:210-471
               
               
               Cow position:chr23:13511841-13511593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:211-466
               
               
               Cow position:chr23:25358839-25358598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:213-383
               
               
               Cow position:chr23:4877473-4877302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-402
               
               
               Cow position:chr23:35247480-35247292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-403
               
               
               Cow position:chr23:41348511-41348702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-410
               
               
               Cow position:chr23:22297926-22298117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:213-414
               
               
               Cow position:chr23:17486711-17486912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-415
               
               
               Cow position:chr23:20002367-20002168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-419
               
               
               Cow position:chr23:29069328-29069533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 135

               
               
               Conread position:213-423
               
               
               Cow position:chr23:21309300-21309508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-440
               
               
               Cow position:chr23:39780867-39780644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-442
               
               
               Cow position:chr23:11129345-11129123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:213-443
               
               
               Cow position:chr23:306635-306409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr23:1254800-1254574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-443
               
               
               Cow position:chr23:1656007-1655779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr23:5436530-5436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-443
               
               
               Cow position:chr23:34356753-34356528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-444
               
               
               Cow position:chr23:307568-307341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-451
               
               
               Cow position:chr23:4336179-4335954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-454
               
               
               Cow position:chr23:24867422-24867179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:213-460
               
               
               Cow position:chr23:1397926-1398170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:213-464
               
               
               Cow position:chr23:5436891-5437134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-464
               
               
               Cow position:chr23:30951068-30950824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:213-464
               
               
               Cow position:chr23:32479905-32480172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-464
               
               
               Cow position:chr23:38455065-38455318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:213-465
               
               
               Cow position:chr23:10553896-10554145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr23:16699929-16700179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-465
               
               
               Cow position:chr23:24704403-24704144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr23:5162542-5162288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr23:5617686-5617438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr23:7574512-7574770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr23:16582797-16583053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr23:18296919-18296669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr23:20557732-20557989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr23:21336371-21336629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr23:344075-344317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-471
               
               
               Cow position:chr23:1923725-1923979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr23:2501741-2501996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr23:3282009-3282258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr23:5723647-5723400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:213-471
               
               
               Cow position:chr23:6994870-6995121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr23:12091244-12091502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:213-471
               
               
               Cow position:chr23:13946150-13945886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:213-471
               
               
               Cow position:chr23:14164282-14164544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr23:26632917-26632660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:213-471
               
               
               Cow position:chr23:33601426-33601671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):211, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr23:39083563-39083310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr23:40648619-40648867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-474
               
               
               Cow position:chr23:18697913-18698176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr23:187291-187026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-475
               
               
               Cow position:chr23:9652374-9652625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr23:18402177-18402436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-475
               
               
               Cow position:chr23:30662526-30662776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):226, 76

               
               
               Conread position:213-475
               
               
               Cow position:chr23:34314844-34315117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:213-477
               
               
               Cow position:chr23:4966931-4966670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:213-477
               
               
               Cow position:chr23:11045599-11045337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr23:21452617-21452881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-477
               
               
               Cow position:chr23:21502518-21502787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:214-471
               
               
               Cow position:chr23:39775837-39775587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:215-466
               
               
               Cow position:chr23:9734519-9734276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-471
               
               
               Cow position:chr23:1742464-1742213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:215-471
               
               
               Cow position:chr23:14739559-14739306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-471
               
               
               Cow position:chr23:22804835-22804581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:218-419
               
               
               Cow position:chr23:4795277-4795082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:218-466
               
               
               Cow position:chr23:2282073-2282312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):6, 71

               
               
               Conread position:218-467
               
               
               Cow position:chr23:22414198-22414432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:218-475
               
               
               Cow position:chr23:35938453-35938195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 125

               
               
               Conread position:219-441
               
               
               Cow position:chr23:3522851-3522639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:219-466
               
               
               Cow position:chr23:14838639-14838878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:220-471
               
               
               Cow position:chr23:5426538-5426288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:221-419
               
               
               Cow position:chr23:38502993-38503199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:221-447
               
               
               Cow position:chr23:1701275-1701051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-465
               
               
               Cow position:chr23:1636382-1636141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:221-465
               
               
               Cow position:chr23:6592604-6592840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr23:1337195-1337439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:221-466
               
               
               Cow position:chr23:4968415-4968661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:221-466
               
               
               Cow position:chr23:11845379-11845146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr23:13555336-13555570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:221-469
               
               
               Cow position:chr23:10416313-10416568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:221-471
               
               
               Cow position:chr23:534331-534086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr23:15743194-15742949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr23:18415941-18416191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:221-471
               
               
               Cow position:chr23:29034418-29034174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr23:33940053-33940297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:221-475
               
               
               Cow position:chr23:20194821-20195066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr23:7845397-7845143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr23:26794803-26795054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:221-477
               
               
               Cow position:chr23:27544931-27544678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:223-435
               
               
               Cow position:chr23:39275994-39275782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:223-461
               
               
               Cow position:chr23:23409835-23409606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:226-471
               
               
               Cow position:chr23:25378746-25378511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:228-455
               
               
               Cow position:chr23:36172621-36172394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:228-466
               
               
               Cow position:chr23:13599438-13599207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 80

               
               
               Conread position:228-471
               
               
               Cow position:chr23:1767926-1767687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:228-471
               
               
               Cow position:chr23:38973945-38973699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:228-475
               
               
               Cow position:chr23:12334307-12334057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:229-471
               
               
               Cow position:chr23:25864600-25864830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:230-471
               
               
               Cow position:chr23:6367709-6367466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:230-471
               
               
               Cow position:chr23:28944973-28945207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:231-471
               
               
               Cow position:chr23:10014624-10014396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):193, 76

               
               
               Conread position:231-471
               
               
               Cow position:chr23:39806964-39806727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:236-467
               
               
               Cow position:chr23:11994810-11994600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):162, 18

               
               
               Conread position:237-466
               
               
               Cow position:chr23:12050445-12050227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):207, 66

               
               
               Conread position:237-469
               
               
               Cow position:chr23:10853134-10852908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:237-471
               
               
               Cow position:chr23:33711849-33711619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:238-419
               
               
               Cow position:chr23:3191037-3191217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-460
               
               
               Cow position:chr23:4996012-4996232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:238-463
               
               
               Cow position:chr23:11081343-11081124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:238-466
               
               
               Cow position:chr23:19370987-19371208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr23:21446204-21445978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr23:26949284-26949056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:239-448
               
               
               Cow position:chr23:38208812-38208601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:239-471
               
               
               Cow position:chr23:3247675-3247442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:243-453
               
               
               Cow position:chr23:5795560-5795352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:243-467
               
               
               Cow position:chr23:16881080-16881301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:244-471
               
               
               Cow position:chr23:8293583-8293362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:245-461
               
               
               Cow position:chr23:17404920-17404706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:247-431
               
               
               Cow position:chr23:15280418-15280602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:247-443
               
               
               Cow position:chr23:3244834-3245031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:247-447
               
               
               Cow position:chr23:2799659-2799465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:247-471
               
               
               Cow position:chr23:1885094-1885315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:247-471
               
               
               Cow position:chr23:4726872-4726644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:247-475
               
               
               Cow position:chr23:35239429-35239197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:248-460
               
               
               Cow position:chr23:1605306-1605095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-471
               
               
               Cow position:chr23:34416639-34416418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:248-471
               
               
               Cow position:chr23:37065927-37065698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:250-454
               
               
               Cow position:chr23:18802194-18802400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:250-465
               
               
               Cow position:chr23:5745257-5745040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:250-471
               
               
               Cow position:chr23:5516045-5515824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:250-471
               
               
               Cow position:chr23:16631345-16631125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:250-477
               
               
               Cow position:chr23:39573176-39573406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:251-466
               
               
               Cow position:chr23:1921152-1921365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:252-466
               
               
               Cow position:chr23:4329601-4329819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:254-471
               
               
               Cow position:chr23:32309757-32309537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 188

               
               
               Conread position:255-454
               
               
               Cow position:chr23:29626487-29626288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:255-471
               
               
               Cow position:chr23:417218-417017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:259-473
               
               
               Cow position:chr23:20753079-20752866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:260-443
               
               
               Cow position:chr23:349657-349840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:262-471
               
               
               Cow position:chr23:23114097-23113886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:266-461
               
               
               Cow position:chr23:1647678-1647486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:267-475
               
               
               Cow position:chr23:7402760-7402550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:269-471
               
               
               Cow position:chr23:20056810-20057009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:274-471
               
               
               Cow position:chr23:33153141-33153332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:290-454
               
               
               Cow position:chr23:9713358-9713189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:290-475
               
               
               Cow position:chr23:1670938-1670753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:304-471
               
               
               Cow position:chr23:3208597-3208762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:308-471
               
               
               Cow position:chr23:39028797-39028637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:310-475
               
               
               Cow position:chr23:3955431-3955260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:313-465
               
               
               Cow position:chr23:38854725-38854872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:313-474
               
               
               Cow position:chr23:1929041-1928889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:317-466
               
               
               Cow position:chr23:1068310-1068451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:365-475
               
               
               Cow position:chr23:360952-361064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:366-475
               
               
               Cow position:chr23:7596369-7596482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:144-477
               
               
               Cow position:chr24:14746815-14746459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:145-466
               
               
               Cow position:chr24:32758595-32758924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:154-446
               
               
               Cow position:chr24:1438115-1438419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:155-471
               
               
               Cow position:chr24:19801013-19800677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 207

               
               
               Conread position:156-475
               
               
               Cow position:chr24:27633552-27633235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:162-312
               
               
               Cow position:chr24:32428655-32428809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:162-465
               
               
               Cow position:chr24:5754969-5754675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:163-417
               
               
               Cow position:chr24:23824287-23824539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:163-419
               
               
               Cow position:chr24:32194651-32194391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:163-429
               
               
               Cow position:chr24:42942973-42943235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 185

               
               
               Conread position:163-443
               
               
               Cow position:chr24:30544725-30545001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 150

               
               
               Conread position:163-454
               
               
               Cow position:chr24:27607946-27608251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 213

               
               
               Conread position:163-461
               
               
               Cow position:chr24:34368861-34369163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:163-464
               
               
               Cow position:chr24:32158129-32158434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:163-465
               
               
               Cow position:chr24:28722042-28721728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):60, 141

               
               
               Conread position:163-466
               
               
               Cow position:chr24:212135-211821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):60, 196

               
               
               Conread position:163-466
               
               
               Cow position:chr24:29539765-29540071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:163-471
               
               
               Cow position:chr24:7917214-7917534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:163-471
               
               
               Cow position:chr24:30897397-30897707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):52, 172

               
               
               Conread position:163-471
               
               
               Cow position:chr24:33723714-33724014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:163-473
               
               
               Cow position:chr24:29389382-29389067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:163-475
               
               
               Cow position:chr24:15508404-15508710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 136

               
               
               Conread position:163-477
               
               
               Cow position:chr24:37945481-37945810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 172

               
               
               Conread position:164-400
               
               
               Cow position:chr24:16399296-16399530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:164-413
               
               
               Cow position:chr24:6957616-6957391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):157, 59

               
               
               Conread position:164-442
               
               
               Cow position:chr24:19072-19344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):145, 54

               
               
               Conread position:164-464
               
               
               Cow position:chr24:26455986-26455677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:164-465
               
               
               Cow position:chr24:41423760-41423446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 305

               
               
               Conread position:164-471
               
               
               Cow position:chr24:27874737-27874430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:165-465
               
               
               Cow position:chr24:14617801-14617491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:165-471
               
               
               Cow position:chr24:32822632-32822948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:165-471
               
               
               Cow position:chr24:39483626-39483308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:165-475
               
               
               Cow position:chr24:32124492-32124813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:166-400
               
               
               Cow position:chr24:28045895-28045653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 181

               
               
               Conread position:167-397
               
               
               Cow position:chr24:25165177-25164938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 181

               
               
               Conread position:167-453
               
               
               Cow position:chr24:2970465-2970758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 192

               
               
               Conread position:173-461
               
               
               Cow position:chr24:25678160-25677878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:173-475
               
               
               Cow position:chr24:8887036-8886738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:180-400
               
               
               Cow position:chr24:28600314-28600537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:181-437
               
               
               Cow position:chr24:19905719-19905952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):139, 79

               
               
               Conread position:181-466
               
               
               Cow position:chr24:30860765-30860472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 171

               
               
               Conread position:188-401
               
               
               Cow position:chr24:12452905-12452683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 158

               
               
               Conread position:189-466
               
               
               Cow position:chr24:19612127-19611845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 115

               
               
               Conread position:191-477
               
               
               Cow position:chr24:35827855-35827561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:206-466
               
               
               Cow position:chr24:15373498-15373245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 130

               
               
               Conread position:208-477
               
               
               Cow position:chr24:28690775-28690515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:210-443
               
               
               Cow position:chr24:29171050-29170828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:210-457
               
               
               Cow position:chr24:29605944-29606200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 126

               
               
               Conread position:212-477
               
               
               Cow position:chr24:29679226-29679483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:213-408
               
               
               Cow position:chr24:18615086-18614893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:213-413
               
               
               Cow position:chr24:27900824-27900617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:213-416
               
               
               Cow position:chr24:41405980-41405783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 109

               
               
               Conread position:213-416
               
               
               Cow position:chr24:43832616-43832409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 128

               
               
               Conread position:213-419
               
               
               Cow position:chr24:35150604-35150405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:213-419
               
               
               Cow position:chr24:39523363-39523564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-433
               
               
               Cow position:chr24:27418018-27418230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:213-443
               
               
               Cow position:chr24:19465832-19466063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:213-451
               
               
               Cow position:chr24:28289168-28289398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-454
               
               
               Cow position:chr24:25885073-25885314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:213-454
               
               
               Cow position:chr24:34742839-34742602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-459
               
               
               Cow position:chr24:7777543-7777773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):207, 77

               
               
               Conread position:213-464
               
               
               Cow position:chr24:34008487-34008740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-465
               
               
               Cow position:chr24:17955359-17955606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:213-466
               
               
               Cow position:chr24:814184-814429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr24:10300162-10299919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr24:16510063-16509806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 146

               
               
               Conread position:213-466
               
               
               Cow position:chr24:18331806-18331560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:213-466
               
               
               Cow position:chr24:18741486-18741735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr24:28326995-28327248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):94, 187

               
               
               Conread position:213-466
               
               
               Cow position:chr24:43200190-43200440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 8

               
               
               Conread position:213-466
               
               
               Cow position:chr24:44987289-44987547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-467
               
               
               Cow position:chr24:18313847-18314112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr24:3493970-3493723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:213-471
               
               
               Cow position:chr24:15861508-15861770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr24:16089313-16089067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr24:16994967-16994717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr24:18474643-18474914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:213-471
               
               
               Cow position:chr24:20874767-20874511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:213-471
               
               
               Cow position:chr24:24250808-24250559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:213-471
               
               
               Cow position:chr24:24457165-24457415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr24:29673607-29673350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr24:31159701-31159448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:213-471
               
               
               Cow position:chr24:32071047-32070797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):108, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr24:40130215-40129953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr24:43364444-43364190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:213-473
               
               
               Cow position:chr24:27290957-27290697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-473
               
               
               Cow position:chr24:44054082-44054324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:213-475
               
               
               Cow position:chr24:6102913-6102648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr24:17104484-17104748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-475
               
               
               Cow position:chr24:28990645-28990391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:213-475
               
               
               Cow position:chr24:33153862-33153604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 90

               
               
               Conread position:213-476
               
               
               Cow position:chr24:32204709-32204968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr24:15057481-15057220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:213-477
               
               
               Cow position:chr24:18017313-18017049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:213-477
               
               
               Cow position:chr24:28063033-28062776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:213-477
               
               
               Cow position:chr24:34396093-34396350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:214-475
               
               
               Cow position:chr24:33465537-33465783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:215-454
               
               
               Cow position:chr24:17752027-17752266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:215-454
               
               
               Cow position:chr24:19736251-19736482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:216-471
               
               
               Cow position:chr24:17294116-17294361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):208, 16

               
               
               Conread position:216-471
               
               
               Cow position:chr24:29782244-29781995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:218-454
               
               
               Cow position:chr24:2402287-2402527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:218-475
               
               
               Cow position:chr24:12263623-12263880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:218-475
               
               
               Cow position:chr24:24755528-24755271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:218-475
               
               
               Cow position:chr24:43432873-43432619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:218-477
               
               
               Cow position:chr24:20943242-20942989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:219-464
               
               
               Cow position:chr24:2095803-2096051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr24:33221853-33222111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:219-474
               
               
               Cow position:chr24:12200332-12200590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:220-467
               
               
               Cow position:chr24:6450579-6450331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:221-398
               
               
               Cow position:chr24:37823604-37823432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-404
               
               
               Cow position:chr24:34496199-34496016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:221-415
               
               
               Cow position:chr24:39791618-39791426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-434
               
               
               Cow position:chr24:34272887-34272679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:221-444
               
               
               Cow position:chr24:24662054-24662272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-448
               
               
               Cow position:chr24:29707717-29707944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:221-448
               
               
               Cow position:chr24:32739186-32739419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:221-452
               
               
               Cow position:chr24:37395134-37395359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr24:27725935-27726168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr24:32054735-32054506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:221-464
               
               
               Cow position:chr24:5683355-5683116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:221-464
               
               
               Cow position:chr24:10499291-10499052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr24:27267702-27267468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:221-465
               
               
               Cow position:chr24:37037979-37037736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr24:14171606-14171858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:221-466
               
               
               Cow position:chr24:17832744-17832978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr24:19000127-18999883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:221-466
               
               
               Cow position:chr24:30235947-30235709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr24:33098396-33098656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr24:5142019-5141775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr24:16895359-16895605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:221-471
               
               
               Cow position:chr24:18970431-18970677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr24:28496505-28496752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr24:28553487-28553716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:221-471
               
               
               Cow position:chr24:29595734-29595980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:221-477
               
               
               Cow position:chr24:32369838-32370096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:222-466
               
               
               Cow position:chr24:17860181-17860419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:222-475
               
               
               Cow position:chr24:34410716-34410475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:222-477
               
               
               Cow position:chr24:36404067-36404320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:224-419
               
               
               Cow position:chr24:35467139-35467322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):152, 17

               
               
               Conread position:228-466
               
               
               Cow position:chr24:3430804-3430570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:228-471
               
               
               Cow position:chr24:18390234-18390458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):196, 67

               
               
               Conread position:228-471
               
               
               Cow position:chr24:31324355-31324112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:228-471
               
               
               Cow position:chr24:31359391-31359157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:228-471
               
               
               Cow position:chr24:33944472-33944235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:229-443
               
               
               Cow position:chr24:11840257-11840044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:229-471
               
               
               Cow position:chr24:23186849-23187086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:233-454
               
               
               Cow position:chr24:2675381-2675169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:238-399
               
               
               Cow position:chr24:39910972-39911134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:238-433
               
               
               Cow position:chr24:24061743-24061942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:238-449
               
               
               Cow position:chr24:16645259-16645471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:238-464
               
               
               Cow position:chr24:352546-352767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:238-466
               
               
               Cow position:chr24:18243406-18243633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:238-466
               
               
               Cow position:chr24:18484935-18485161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:238-471
               
               
               Cow position:chr24:19769550-19769324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr24:29587061-29586824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:238-471
               
               
               Cow position:chr24:30229534-30229302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr24:44040944-44041182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 223

               
               
               Conread position:239-454
               
               
               Cow position:chr24:41755922-41755710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 63

               
               
               Conread position:239-471
               
               
               Cow position:chr24:11119337-11119112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):178, 70

               
               
               Conread position:241-471
               
               
               Cow position:chr24:3152520-3152750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:243-471
               
               
               Cow position:chr24:11887213-11886992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:243-477
               
               
               Cow position:chr24:18356996-18357229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 66

               
               
               Conread position:247-443
               
               
               Cow position:chr24:40837824-40837636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):173, 62

               
               
               Conread position:247-443
               
               
               Cow position:chr24:41986047-41985848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:247-452
               
               
               Cow position:chr24:35675591-35675394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-466
               
               
               Cow position:chr24:29063607-29063812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:247-471
               
               
               Cow position:chr24:27906491-27906269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:248-471
               
               
               Cow position:chr24:27340968-27341189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:250-460
               
               
               Cow position:chr24:38815016-38814810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr24:42825456-42825663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:251-471
               
               
               Cow position:chr24:31036396-31036184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:257-466
               
               
               Cow position:chr24:7914048-7913838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:259-472
               
               
               Cow position:chr24:39143652-39143438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:264-444
               
               
               Cow position:chr24:10125909-10125729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:264-460
               
               
               Cow position:chr24:20249861-20250058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:264-464
               
               
               Cow position:chr24:36008521-36008321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:265-464
               
               
               Cow position:chr24:18344097-18343887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 204

               
               
               Conread position:266-441
               
               
               Cow position:chr24:39905423-39905589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:274-471
               
               
               Cow position:chr24:10841182-10841385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:277-477
               
               
               Cow position:chr24:30483926-30484124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:285-466
               
               
               Cow position:chr24:42007750-42007575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:286-466
               
               
               Cow position:chr24:27052481-27052659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:292-461
               
               
               Cow position:chr24:35794728-35794895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:300-466
               
               
               Cow position:chr24:18405312-18405481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:308-467
               
               
               Cow position:chr24:6154800-6154647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:310-465
               
               
               Cow position:chr24:27968070-27967915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:310-477
               
               
               Cow position:chr24:31382887-31382718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:312-473
               
               
               Cow position:chr24:21860238-21860397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:314-471
               
               
               Cow position:chr24:40984145-40983994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:315-466
               
               
               Cow position:chr24:18695600-18695455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:337-455
               
               
               Cow position:chr24:28023748-28023632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:337-471
               
               
               Cow position:chr24:6160883-6161016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:348-471
               
               
               Cow position:chr24:25092487-25092361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:348-471
               
               
               Cow position:chr24:38347639-38347513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:351-475
               
               
               Cow position:chr24:20969848-20969974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:353-466
               
               
               Cow position:chr24:30226891-30226776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:147-475
               
               
               Cow position:chr25:5407917-5407587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 163

               
               
               Conread position:153-465
               
               
               Cow position:chr25:8576871-8576552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:155-465
               
               
               Cow position:chr25:24405557-24405877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 196

               
               
               Conread position:155-475
               
               
               Cow position:chr25:25753829-25754149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:163-329
               
               
               Cow position:chr25:15025076-15024901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:163-341
               
               
               Cow position:chr25:10364167-10364358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:163-350
               
               
               Cow position:chr25:18448979-18448784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-438
               
               
               Cow position:chr25:14075471-14075187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:163-447
               
               
               Cow position:chr25:26240707-26240418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-466
               
               
               Cow position:chr25:4681392-4681095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:163-466
               
               
               Cow position:chr25:22575361-22575659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):96, 184

               
               
               Conread position:163-471
               
               
               Cow position:chr25:12755304-12755639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 214

               
               
               Conread position:163-471
               
               
               Cow position:chr25:26089640-26089961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:163-472
               
               
               Cow position:chr25:11131748-11131433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-475
               
               
               Cow position:chr25:20076666-20076341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-475
               
               
               Cow position:chr25:24669265-24669587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 167

               
               
               Conread position:163-475
               
               
               Cow position:chr25:31732146-31732490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:163-475
               
               
               Cow position:chr25:34768561-34768876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 180

               
               
               Conread position:163-476
               
               
               Cow position:chr25:12509834-12510163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:163-477
               
               
               Cow position:chr25:2111223-2110923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:163-477
               
               
               Cow position:chr25:18266330-18266002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:163-477
               
               
               Cow position:chr25:26655079-26654757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:164-431
               
               
               Cow position:chr25:24066502-24066765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:164-446
               
               
               Cow position:chr25:12932793-12932507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:164-450
               
               
               Cow position:chr25:1763246-1762969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:164-465
               
               
               Cow position:chr25:9056341-9056048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:164-466
               
               
               Cow position:chr25:8511925-8512233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 193

               
               
               Conread position:164-466
               
               
               Cow position:chr25:18293896-18293608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):140, 53

               
               
               Conread position:164-475
               
               
               Cow position:chr25:11436638-11436958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 188

               
               
               Conread position:164-475
               
               
               Cow position:chr25:37594571-37594258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 186

               
               
               Conread position:165-471
               
               
               Cow position:chr25:29215239-29215537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:166-415
               
               
               Cow position:chr25:33204920-33205171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:166-466
               
               
               Cow position:chr25:33691715-33691415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:166-474
               
               
               Cow position:chr25:13387971-13387657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:166-475
               
               
               Cow position:chr25:40956822-40957144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:168-414
               
               
               Cow position:chr25:13562595-13562346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:171-438
               
               
               Cow position:chr25:25716799-25716537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:183-471
               
               
               Cow position:chr25:19679492-19679199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:185-475
               
               
               Cow position:chr25:34378959-34379254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:187-477
               
               
               Cow position:chr25:14570516-14570214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:188-465
               
               
               Cow position:chr25:18161426-18161149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:198-464
               
               
               Cow position:chr25:16691790-16691523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:204-471
               
               
               Cow position:chr25:20785472-20785731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:208-477
               
               
               Cow position:chr25:20216945-20216677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:210-471
               
               
               Cow position:chr25:26087632-26087372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:212-460
               
               
               Cow position:chr25:38135864-38135611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 133

               
               
               Conread position:213-385
               
               
               Cow position:chr25:11038462-11038283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:213-408
               
               
               Cow position:chr25:35052514-35052705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-409
               
               
               Cow position:chr25:11956912-11956722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-411
               
               
               Cow position:chr25:26052010-26051814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 25

               
               
               Conread position:213-419
               
               
               Cow position:chr25:6928400-6928603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-431
               
               
               Cow position:chr25:17474405-17474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-435
               
               
               Cow position:chr25:30816997-30816774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-436
               
               
               Cow position:chr25:1823989-1824208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:213-436
               
               
               Cow position:chr25:36555581-36555802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:213-442
               
               
               Cow position:chr25:17119850-17119626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr25:19363951-19364181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-449
               
               
               Cow position:chr25:33457840-33457604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:213-451
               
               
               Cow position:chr25:18201821-18202054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr25:7641342-7641581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:213-454
               
               
               Cow position:chr25:14157735-14157491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:213-454
               
               
               Cow position:chr25:14196969-14196729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:213-454
               
               
               Cow position:chr25:26701134-26700906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:213-454
               
               
               Cow position:chr25:36762213-36761975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-464
               
               
               Cow position:chr25:16921688-16921930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:213-464
               
               
               Cow position:chr25:26679334-26679088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-465
               
               
               Cow position:chr25:6473979-6474236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):95, 229

               
               
               Conread position:213-466
               
               
               Cow position:chr25:5846700-5846945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:213-466
               
               
               Cow position:chr25:18564594-18564347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr25:36081983-36081735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:213-467
               
               
               Cow position:chr25:10504233-10504480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:213-469
               
               
               Cow position:chr25:22730936-22730688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:213-471
               
               
               Cow position:chr25:7216932-7216684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-471
               
               
               Cow position:chr25:7581319-7581571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:213-471
               
               
               Cow position:chr25:8961878-8961627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr25:11585626-11585375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr25:14513223-14512964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:213-471
               
               
               Cow position:chr25:17658719-17658466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr25:20133207-20133459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr25:24452046-24452315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:213-471
               
               
               Cow position:chr25:25861243-25861503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr25:30619171-30618919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr25:36017641-36017391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):124, 90

               
               
               Conread position:213-472
               
               
               Cow position:chr25:14791862-14791606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-472
               
               
               Cow position:chr25:22750899-22751157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-473
               
               
               Cow position:chr25:13443302-13443558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr25:8157403-8157662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr25:12319245-12319498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr25:28187837-28188101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:213-477
               
               
               Cow position:chr25:1838349-1838083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chr25:20008241-20007981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:214-420
               
               
               Cow position:chr25:5920187-5919987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:214-477
               
               
               Cow position:chr25:12840611-12840885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:215-452
               
               
               Cow position:chr25:21893444-21893207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:215-461
               
               
               Cow position:chr25:24202907-24203129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):209, 13

               
               
               Conread position:215-466
               
               
               Cow position:chr25:13569070-13569315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:215-471
               
               
               Cow position:chr25:18905991-18905738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:215-471
               
               
               Cow position:chr25:21894779-21895033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:218-466
               
               
               Cow position:chr25:22296920-22297160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:218-466
               
               
               Cow position:chr25:38982195-38981961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr25:18988496-18988233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:218-471
               
               
               Cow position:chr25:21245502-21245754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-465
               
               
               Cow position:chr25:33686584-33686820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:219-472
               
               
               Cow position:chr25:23917942-23917695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):205, 9

               
               
               Conread position:219-473
               
               
               Cow position:chr25:16064993-16064739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:221-411
               
               
               Cow position:chr25:23817741-23817935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:221-444
               
               
               Cow position:chr25:27801378-27801166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):203, 90

               
               
               Conread position:221-454
               
               
               Cow position:chr25:24573164-24572938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-459
               
               
               Cow position:chr25:5474131-5474362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr25:10217950-10218192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr25:13272668-13272431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr25:24651346-24651593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:221-471
               
               
               Cow position:chr25:21668348-21668099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr25:6682963-6683217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr25:36036680-36036936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:228-464
               
               
               Cow position:chr25:22315298-22315063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 144

               
               
               Conread position:228-465
               
               
               Cow position:chr25:23779237-23779467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):196, 75

               
               
               Conread position:228-471
               
               
               Cow position:chr25:788352-788118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):196, 79

               
               
               Conread position:229-434
               
               
               Cow position:chr25:12252717-12252923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:229-471
               
               
               Cow position:chr25:6688037-6687803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:229-471
               
               
               Cow position:chr25:30462216-30462446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):191, 100

               
               
               Conread position:237-466
               
               
               Cow position:chr25:12817449-12817234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):198, 53

               
               
               Conread position:238-452
               
               
               Cow position:chr25:3373299-3373501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:238-465
               
               
               Cow position:chr25:15377409-15377187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:238-466
               
               
               Cow position:chr25:19129937-19129711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:238-466
               
               
               Cow position:chr25:25051295-25051523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:238-471
               
               
               Cow position:chr25:6961070-6961300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:238-471
               
               
               Cow position:chr25:8120863-8120633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:238-471
               
               
               Cow position:chr25:15440694-15440927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:238-471
               
               
               Cow position:chr25:16319057-16319277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:238-475
               
               
               Cow position:chr25:16714186-16714426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-477
               
               
               Cow position:chr25:40321205-40321443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:240-471
               
               
               Cow position:chr25:17144509-17144277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:241-471
               
               
               Cow position:chr25:11661738-11661963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:243-475
               
               
               Cow position:chr25:448087-448323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:247-466
               
               
               Cow position:chr25:20069788-20069582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):173, 30

               
               
               Conread position:248-454
               
               
               Cow position:chr25:16560100-16560308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:248-460
               
               
               Cow position:chr25:11066070-11066284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:248-471
               
               
               Cow position:chr25:19317338-19317112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:250-442
               
               
               Cow position:chr25:11432874-11433072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-443
               
               
               Cow position:chr25:26134114-26133921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:250-453
               
               
               Cow position:chr25:11051600-11051400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:250-459
               
               
               Cow position:chr25:15634398-15634611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-460
               
               
               Cow position:chr25:5921015-5920802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:250-471
               
               
               Cow position:chr25:6996855-6996635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr25:20348940-20348712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:250-473
               
               
               Cow position:chr25:17342529-17342299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:252-454
               
               
               Cow position:chr25:9349214-9349403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:254-441
               
               
               Cow position:chr25:38425428-38425244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:254-465
               
               
               Cow position:chr25:20019936-20020134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:254-471
               
               
               Cow position:chr25:35347970-35347761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:254-473
               
               
               Cow position:chr25:35612246-35612452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:255-473
               
               
               Cow position:chr25:12081256-12081471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:259-443
               
               
               Cow position:chr25:20664220-20664413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:259-464
               
               
               Cow position:chr25:17566649-17566445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:259-471
               
               
               Cow position:chr25:33978156-33978363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:264-454
               
               
               Cow position:chr25:21289403-21289213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:265-475
               
               
               Cow position:chr25:41363094-41363301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:271-471
               
               
               Cow position:chr25:9754046-9754236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:273-466
               
               
               Cow position:chr25:9956990-9957182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:274-471
               
               
               Cow position:chr25:1735274-1735459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:278-475
               
               
               Cow position:chr25:8560912-8560711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:280-466
               
               
               Cow position:chr25:13672436-13672250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 52

               
               
               Conread position:280-471
               
               
               Cow position:chr25:12239106-12239295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:281-419
               
               
               Cow position:chr25:30450085-30449947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:282-473
               
               
               Cow position:chr25:12997632-12997443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:286-473
               
               
               Cow position:chr25:36535398-36535586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:289-465
               
               
               Cow position:chr25:25827503-25827325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:290-471
               
               
               Cow position:chr25:35333189-35333011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:300-475
               
               
               Cow position:chr25:36033457-36033284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:309-466
               
               
               Cow position:chr25:32587867-32588021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:310-475
               
               
               Cow position:chr25:12824009-12824174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-477
               
               
               Cow position:chr25:5515022-5514852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:313-466
               
               
               Cow position:chr25:12204481-12204326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:315-466
               
               
               Cow position:chr25:36779504-36779354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:315-471
               
               
               Cow position:chr25:7329552-7329401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:315-475
               
               
               Cow position:chr25:31732731-31732888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:348-471
               
               
               Cow position:chr25:22332740-22332615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:353-466
               
               
               Cow position:chr25:16001552-16001666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:353-471
               
               
               Cow position:chr25:23323177-23323057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:354-461
               
               
               Cow position:chr25:10365782-10365888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:358-466
               
               
               Cow position:chr25:4002767-4002656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:358-477
               
               
               Cow position:chr25:12520993-12521114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:155-319
               
               
               Cow position:chr26:7962130-7961960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):97, 82

               
               
               Conread position:155-349
               
               
               Cow position:chr26:10137547-10137752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:155-466
               
               
               Cow position:chr26:12520223-12519895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:158-467
               
               
               Cow position:chr26:14905606-14905935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 216

               
               
               Conread position:162-471
               
               
               Cow position:chr26:19111100-19110776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 56

               
               
               Conread position:162-475
               
               
               Cow position:chr26:14080891-14080578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:163-311
               
               
               Cow position:chr26:13018197-13018361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:163-446
               
               
               Cow position:chr26:9666229-9666514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:163-448
               
               
               Cow position:chr26:32955440-32955738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:163-449
               
               
               Cow position:chr26:6470088-6470380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:163-453
               
               
               Cow position:chr26:21860008-21859714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 185

               
               
               Conread position:163-454
               
               
               Cow position:chr26:798102-798410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:163-461
               
               
               Cow position:chr26:16604479-16604170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:163-464
               
               
               Cow position:chr26:20551335-20551022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:163-465
               
               
               Cow position:chr26:2196404-2196710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:163-465
               
               
               Cow position:chr26:9632177-9632490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:163-465
               
               
               Cow position:chr26:32897674-32897993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:163-466
               
               
               Cow position:chr26:32865704-32866011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:163-471
               
               
               Cow position:chr26:5360807-5361097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:163-477
               
               
               Cow position:chr26:33011475-33011803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:164-471
               
               
               Cow position:chr26:22249285-22249606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:165-465
               
               
               Cow position:chr26:35704577-35704268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:165-466
               
               
               Cow position:chr26:33194812-33194524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:166-454
               
               
               Cow position:chr26:5246311-5246596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):143, 41

               
               
               Conread position:176-442
               
               
               Cow position:chr26:17155153-17155419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:183-465
               
               
               Cow position:chr26:20770009-20769733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:190-467
               
               
               Cow position:chr26:34256475-34256177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:191-461
               
               
               Cow position:chr26:6475275-6475548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:198-443
               
               
               Cow position:chr26:13818566-13818323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:200-466
               
               
               Cow position:chr26:33745038-33744770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):112, 5

               
               
               Conread position:200-471
               
               
               Cow position:chr26:2739316-2739584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:200-475
               
               
               Cow position:chr26:30605216-30605498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:204-471
               
               
               Cow position:chr26:22152363-22152097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:207-419
               
               
               Cow position:chr26:18876829-18877033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:207-434
               
               
               Cow position:chr26:2986947-2987167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 5

               
               
               Conread position:208-442
               
               
               Cow position:chr26:30254502-30254727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 75

               
               
               Conread position:209-471
               
               
               Cow position:chr26:12154992-12155247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:210-464
               
               
               Cow position:chr26:12893298-12893542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:213-419
               
               
               Cow position:chr26:3706918-3706719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-435
               
               
               Cow position:chr26:32836366-32836148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-439
               
               
               Cow position:chr26:10965466-10965686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:213-440
               
               
               Cow position:chr26:4854671-4854441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:213-449
               
               
               Cow position:chr26:24240806-24240569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:213-452
               
               
               Cow position:chr26:32553817-32553569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 172

               
               
               Conread position:213-454
               
               
               Cow position:chr26:6714175-6714405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-460
               
               
               Cow position:chr26:32834452-32834691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr26:19774172-19774425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr26:8353096-8352839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-466
               
               
               Cow position:chr26:10974256-10973989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr26:12144991-12145242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 147

               
               
               Conread position:213-466
               
               
               Cow position:chr26:14951016-14951266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):97, 147

               
               
               Conread position:213-466
               
               
               Cow position:chr26:31605533-31605283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-466
               
               
               Cow position:chr26:33253189-33253444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-469
               
               
               Cow position:chr26:32058773-32058530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:213-470
               
               
               Cow position:chr26:12237902-12238150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-470
               
               
               Cow position:chr26:31903294-31903037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr26:829932-829683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr26:6252983-6252723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr26:13802238-13801987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr26:14175409-14175152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr26:15211930-15211677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr26:27491374-27491629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:213-471
               
               
               Cow position:chr26:34060460-34060205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-475
               
               
               Cow position:chr26:8643068-8642809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:213-475
               
               
               Cow position:chr26:11134561-11134830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:213-475
               
               
               Cow position:chr26:17057806-17057549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:213-475
               
               
               Cow position:chr26:19459820-19459547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-475
               
               
               Cow position:chr26:25526376-25526113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-475
               
               
               Cow position:chr26:26294069-26294327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 97

               
               
               Conread position:213-475
               
               
               Cow position:chr26:33566917-33567180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-475
               
               
               Cow position:chr26:34108884-34108631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-476
               
               
               Cow position:chr26:9104154-9104417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-476
               
               
               Cow position:chr26:21243222-21242968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:214-471
               
               
               Cow position:chr26:22354540-22354285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:214-471
               
               
               Cow position:chr26:35449189-35448933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:215-438
               
               
               Cow position:chr26:6865149-6864920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:215-443
               
               
               Cow position:chr26:32776387-32776608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):209, 49

               
               
               Conread position:215-477
               
               
               Cow position:chr26:16922062-16921806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:216-435
               
               
               Cow position:chr26:2994576-2994783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):206, 12

               
               
               Conread position:216-471
               
               
               Cow position:chr26:32672304-32672566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 247

               
               
               Conread position:218-467
               
               
               Cow position:chr26:30568542-30568781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):206, 13

               
               
               Conread position:219-349
               
               
               Cow position:chr26:178354-178223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:219-475
               
               
               Cow position:chr26:647606-647853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:219-477
               
               
               Cow position:chr26:9604682-9604422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:221-401
               
               
               Cow position:chr26:4421385-4421559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-416
               
               
               Cow position:chr26:8310850-8310659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:221-419
               
               
               Cow position:chr26:32815669-32815868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:221-440
               
               
               Cow position:chr26:13828193-13827975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:221-443
               
               
               Cow position:chr26:4807672-4807461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:221-461
               
               
               Cow position:chr26:7314990-7315220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr26:17148822-17148586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr26:33045197-33044961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-465
               
               
               Cow position:chr26:23097065-23097300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:221-466
               
               
               Cow position:chr26:8699929-8700169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:221-466
               
               
               Cow position:chr26:32601468-32601230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr26:34314809-34314566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr26:9492040-9491798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr26:13021027-13021273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr26:20291574-20291810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr26:12964579-12964833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:221-476
               
               
               Cow position:chr26:9839420-9839687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 244

               
               
               Conread position:221-477
               
               
               Cow position:chr26:11538650-11538406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:222-477
               
               
               Cow position:chr26:25394157-25393896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 136

               
               
               Conread position:224-471
               
               
               Cow position:chr26:14578446-14578198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:228-466
               
               
               Cow position:chr26:21636925-21637156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:229-447
               
               
               Cow position:chr26:10292711-10292483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:230-471
               
               
               Cow position:chr26:6005947-6006171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:230-471
               
               
               Cow position:chr26:16550098-16549857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:230-475
               
               
               Cow position:chr26:20260691-20260440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:236-452
               
               
               Cow position:chr26:25299703-25299489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:238-399
               
               
               Cow position:chr26:22602936-22603095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-450
               
               
               Cow position:chr26:32832286-32832079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:238-454
               
               
               Cow position:chr26:32670394-32670603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:238-466
               
               
               Cow position:chr26:11263740-11263518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:238-466
               
               
               Cow position:chr26:33074395-33074622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr26:15200414-15200646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:238-473
               
               
               Cow position:chr26:2609704-2609933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:239-466
               
               
               Cow position:chr26:8811228-8811007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:239-471
               
               
               Cow position:chr26:31633829-31633598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:239-476
               
               
               Cow position:chr26:3554402-3554643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:242-471
               
               
               Cow position:chr26:23582847-23583074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:243-471
               
               
               Cow position:chr26:23315871-23315642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:246-464
               
               
               Cow position:chr26:2531093-2531302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:247-471
               
               
               Cow position:chr26:6794238-6794016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:248-477
               
               
               Cow position:chr26:13979034-13979269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:250-467
               
               
               Cow position:chr26:10751917-10751687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:250-473
               
               
               Cow position:chr26:818374-818595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:254-475
               
               
               Cow position:chr26:21992188-21991966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:256-443
               
               
               Cow position:chr26:6486567-6486755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:259-477
               
               
               Cow position:chr26:18917991-18918210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:264-454
               
               
               Cow position:chr26:33857118-33857305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:264-470
               
               
               Cow position:chr26:16179638-16179436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:264-471
               
               
               Cow position:chr26:10767842-10768039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:266-471
               
               
               Cow position:chr26:20013552-20013350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:276-466
               
               
               Cow position:chr26:29353443-29353630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:286-471
               
               
               Cow position:chr26:32013687-32013499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:294-475
               
               
               Cow position:chr26:18692467-18692292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:306-477
               
               
               Cow position:chr26:8819825-8819997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:310-466
               
               
               Cow position:chr26:3181912-3182068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:310-471
               
               
               Cow position:chr26:6447570-6447731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:313-466
               
               
               Cow position:chr26:8186684-8186528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:313-477
               
               
               Cow position:chr26:23925961-23926122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:340-465
               
               
               Cow position:chr26:21351691-21351568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:144-448
               
               
               Cow position:chr27:6159753-6160062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:144-451
               
               
               Cow position:chr27:25998474-25998783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:144-475
               
               
               Cow position:chr27:23929725-23930079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 220

               
               
               Conread position:151-458
               
               
               Cow position:chr27:30365090-30365402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 202

               
               
               Conread position:155-350
               
               
               Cow position:chr27:22245400-22245609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:155-438
               
               
               Cow position:chr27:22225810-22225526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:155-466
               
               
               Cow position:chr27:15319243-15319543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:155-471
               
               
               Cow position:chr27:1637168-1636842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 203

               
               
               Conread position:158-420
               
               
               Cow position:chr27:2847635-2847902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):61, 189

               
               
               Conread position:158-461
               
               
               Cow position:chr27:14937648-14937333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:163-401
               
               
               Cow position:chr27:30829448-30829676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):144, 56

               
               
               Conread position:163-441
               
               
               Cow position:chr27:19083931-19083645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:163-451
               
               
               Cow position:chr27:3306553-3306854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:163-452
               
               
               Cow position:chr27:29504863-29504564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 187

               
               
               Conread position:163-454
               
               
               Cow position:chr27:6453994-6454296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 189

               
               
               Conread position:163-461
               
               
               Cow position:chr27:13005635-13005928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:163-463
               
               
               Cow position:chr27:28002036-28001716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 193

               
               
               Conread position:163-465
               
               
               Cow position:chr27:8430653-8430347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:163-465
               
               
               Cow position:chr27:26441262-26440965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 138

               
               
               Conread position:163-466
               
               
               Cow position:chr27:4858852-4858550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:163-466
               
               
               Cow position:chr27:8353262-8353569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:163-466
               
               
               Cow position:chr27:8962474-8962166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr27:19544134-19543809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-471
               
               
               Cow position:chr27:12191697-12191388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 174

               
               
               Conread position:163-471
               
               
               Cow position:chr27:15409258-15408942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:163-475
               
               
               Cow position:chr27:20553528-20553827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):144, 168

               
               
               Conread position:163-475
               
               
               Cow position:chr27:20749235-20748904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:163-477
               
               
               Cow position:chr27:27050119-27049799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:164-461
               
               
               Cow position:chr27:24509612-24509908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 177

               
               
               Conread position:164-465
               
               
               Cow position:chr27:20766166-20765866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:164-465
               
               
               Cow position:chr27:22330890-22330573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 149

               
               
               Conread position:164-465
               
               
               Cow position:chr27:26299633-26299932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:164-466
               
               
               Cow position:chr27:10992142-10992450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 143

               
               
               Conread position:164-470
               
               
               Cow position:chr27:8048944-8048640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:164-473
               
               
               Cow position:chr27:21393725-21393396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 188

               
               
               Conread position:165-453
               
               
               Cow position:chr27:29516039-29515772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):272, 42

               
               
               Conread position:165-465
               
               
               Cow position:chr27:27053093-27053388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:165-466
               
               
               Cow position:chr27:20037330-20037030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:165-474
               
               
               Cow position:chr27:24225108-24224798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:166-475
               
               
               Cow position:chr27:26161293-26161606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:167-465
               
               
               Cow position:chr27:12244336-12244038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 178

               
               
               Conread position:183-477
               
               
               Cow position:chr27:26218508-26218814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:187-416
               
               
               Cow position:chr27:16455560-16455318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:187-454
               
               
               Cow position:chr27:18593084-18593352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:192-420
               
               
               Cow position:chr27:13977731-13977491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:192-471
               
               
               Cow position:chr27:13251841-13252107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:192-471
               
               
               Cow position:chr27:23128282-23128561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:200-413
               
               
               Cow position:chr27:29593798-29593585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 93

               
               
               Conread position:200-466
               
               
               Cow position:chr27:22035544-22035281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 160

               
               
               Conread position:208-466
               
               
               Cow position:chr27:1122872-1123127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:209-477
               
               
               Cow position:chr27:19685871-19685604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):103, 139

               
               
               Conread position:210-431
               
               
               Cow position:chr27:28260692-28260477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 87

               
               
               Conread position:212-471
               
               
               Cow position:chr27:7731410-7731147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:212-476
               
               
               Cow position:chr27:19660777-19661049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:213-409
               
               
               Cow position:chr27:20812751-20812950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-412
               
               
               Cow position:chr27:17918467-17918273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-419
               
               
               Cow position:chr27:23860012-23860218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-435
               
               
               Cow position:chr27:7974023-7974240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:213-435
               
               
               Cow position:chr27:20514669-20514887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-435
               
               
               Cow position:chr27:26112069-26111843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:213-441
               
               
               Cow position:chr27:16965423-16965645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:213-443
               
               
               Cow position:chr27:10653531-10653756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr27:16088651-16088883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:213-451
               
               
               Cow position:chr27:15378627-15378396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-461
               
               
               Cow position:chr27:26413408-26413162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-461
               
               
               Cow position:chr27:30914856-30915097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-464
               
               
               Cow position:chr27:24331567-24331819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):104, 126

               
               
               Conread position:213-465
               
               
               Cow position:chr27:536311-536554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-465
               
               
               Cow position:chr27:4386215-4385967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr27:8263492-8263239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:213-465
               
               
               Cow position:chr27:12246500-12246752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr27:16705097-16705342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr27:2592388-2592645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr27:2957259-2957497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr27:4390411-4390161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:213-466
               
               
               Cow position:chr27:7935311-7935059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:213-466
               
               
               Cow position:chr27:12516040-12516291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr27:13875582-13875827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr27:19546665-19546410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr27:27641164-27640899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:213-469
               
               
               Cow position:chr27:25276989-25277240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-471
               
               
               Cow position:chr27:1353429-1353691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr27:11480790-11480528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr27:17397608-17397349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-471
               
               
               Cow position:chr27:23554480-23554223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr27:24477263-24477514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-471
               
               
               Cow position:chr27:26226443-26226189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr27:26581590-26581334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr27:30872210-30871958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-474
               
               
               Cow position:chr27:29380701-29380967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:213-475
               
               
               Cow position:chr27:6550310-6550561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr27:10307451-10307193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr27:12278409-12278162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:213-475
               
               
               Cow position:chr27:13411522-13411248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:213-475
               
               
               Cow position:chr27:16103658-16103914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 37

               
               
               Conread position:213-475
               
               
               Cow position:chr27:30988644-30988904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-477
               
               
               Cow position:chr27:426816-427077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:213-477
               
               
               Cow position:chr27:6541478-6541737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-477
               
               
               Cow position:chr27:12596623-12596873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):211, 95

               
               
               Conread position:213-477
               
               
               Cow position:chr27:28518142-28518400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):98, 129

               
               
               Conread position:214-464
               
               
               Cow position:chr27:22454929-22454684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:214-466
               
               
               Cow position:chr27:22171147-22171396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:215-450
               
               
               Cow position:chr27:27038989-27038758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:215-453
               
               
               Cow position:chr27:28190353-28190133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:215-467
               
               
               Cow position:chr27:22559975-22559724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):209, 96

               
               
               Conread position:215-471
               
               
               Cow position:chr27:24371081-24371336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:215-471
               
               
               Cow position:chr27:30359255-30359505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:216-466
               
               
               Cow position:chr27:28922043-28921802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:218-450
               
               
               Cow position:chr27:24738950-24738710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):6, 132

               
               
               Conread position:218-454
               
               
               Cow position:chr27:31148611-31148846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 115

               
               
               Conread position:218-464
               
               
               Cow position:chr27:23510834-23511084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:218-471
               
               
               Cow position:chr27:23483079-23483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:219-439
               
               
               Cow position:chr27:31017972-31017764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):201, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr27:22418913-22418672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr27:4813032-4812779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:219-471
               
               
               Cow position:chr27:8630017-8629772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr27:30261039-30260791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:221-419
               
               
               Cow position:chr27:23877000-23876792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:221-423
               
               
               Cow position:chr27:23108045-23107848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr27:15215083-15215307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:221-454
               
               
               Cow position:chr27:17472657-17472898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:221-455
               
               
               Cow position:chr27:15865463-15865692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:221-456
               
               
               Cow position:chr27:27389168-27388936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr27:23882512-23882283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr27:4672867-4673114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr27:15643030-15643267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr27:20354446-20354679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:221-465
               
               
               Cow position:chr27:23632455-23632693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr27:19387874-19388110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr27:19589328-19589567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr27:19717770-19718018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr27:24014884-24014644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr27:28931946-28931695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr27:1768768-1768526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr27:17995087-17994841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):148, 15

               
               
               Conread position:221-471
               
               
               Cow position:chr27:20283491-20283743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr27:20497061-20497315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr27:22220409-22220651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr27:27020242-27020001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:221-475
               
               
               Cow position:chr27:29831843-29831580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 113

               
               
               Conread position:222-466
               
               
               Cow position:chr27:30764881-30765134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:222-475
               
               
               Cow position:chr27:27694913-27694662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:225-469
               
               
               Cow position:chr27:23735816-23736061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:228-409
               
               
               Cow position:chr27:17646307-17646128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:228-465
               
               
               Cow position:chr27:1058814-1058588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):209, 19

               
               
               Conread position:228-466
               
               
               Cow position:chr27:19648081-19647843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:228-471
               
               
               Cow position:chr27:22386736-22386971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr27:28245664-28245902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:229-459
               
               
               Cow position:chr27:13318112-13317869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 240

               
               
               Conread position:229-471
               
               
               Cow position:chr27:11416316-11416550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:230-471
               
               
               Cow position:chr27:28271287-28271045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 89

               
               
               Conread position:234-439
               
               
               Cow position:chr27:4155863-4156072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):75, 125

               
               
               Conread position:236-465
               
               
               Cow position:chr27:15925215-15925439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:237-471
               
               
               Cow position:chr27:8168560-8168328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:238-431
               
               
               Cow position:chr27:8062479-8062292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:238-452
               
               
               Cow position:chr27:26490037-26489822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-454
               
               
               Cow position:chr27:15867261-15867483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:238-466
               
               
               Cow position:chr27:26807694-26807467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-467
               
               
               Cow position:chr27:30868869-30868645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr27:715372-715604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-471
               
               
               Cow position:chr27:26428261-26428031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr27:26509282-26509059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:238-471
               
               
               Cow position:chr27:27136649-27136418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:238-475
               
               
               Cow position:chr27:27270671-27270432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:239-465
               
               
               Cow position:chr27:26920039-26919807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 178

               
               
               Conread position:239-466
               
               
               Cow position:chr27:17331371-17331595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:239-471
               
               
               Cow position:chr27:10979735-10979961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:239-471
               
               
               Cow position:chr27:15866091-15866325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:239-471
               
               
               Cow position:chr27:30672686-30672462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:240-447
               
               
               Cow position:chr27:6924958-6925167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:240-469
               
               
               Cow position:chr27:18558234-18558459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:240-471
               
               
               Cow position:chr27:27844129-27843895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:242-471
               
               
               Cow position:chr27:11435447-11435220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:243-477
               
               
               Cow position:chr27:16625776-16626009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:243-477
               
               
               Cow position:chr27:30354468-30354235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:247-466
               
               
               Cow position:chr27:23890818-23891037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:247-471
               
               
               Cow position:chr27:6499941-6500162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-475
               
               
               Cow position:chr27:8942809-8942573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:248-455
               
               
               Cow position:chr27:21975934-21976135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:248-475
               
               
               Cow position:chr27:18543868-18544104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:250-454
               
               
               Cow position:chr27:13841252-13841458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 88

               
               
               Conread position:250-460
               
               
               Cow position:chr27:26135030-26135228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):174, 43

               
               
               Conread position:250-470
               
               
               Cow position:chr27:18739260-18739488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-471
               
               
               Cow position:chr27:815245-815467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:250-471
               
               
               Cow position:chr27:19577559-19577776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:250-475
               
               
               Cow position:chr27:706836-707061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:250-475
               
               
               Cow position:chr27:20247921-20247700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:252-466
               
               
               Cow position:chr27:25379873-25380089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:252-471
               
               
               Cow position:chr27:12429292-12429504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:252-475
               
               
               Cow position:chr27:9169755-9169534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:255-466
               
               
               Cow position:chr27:28018226-28018429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:255-475
               
               
               Cow position:chr27:9090902-9090695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):169, 49

               
               
               Conread position:255-477
               
               
               Cow position:chr27:30362142-30362352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:256-470
               
               
               Cow position:chr27:21351132-21350919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:260-471
               
               
               Cow position:chr27:24999847-24999637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:264-463
               
               
               Cow position:chr27:20056071-20055876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:280-477
               
               
               Cow position:chr27:732488-732680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 57

               
               
               Conread position:297-474
               
               
               Cow position:chr27:7538147-7537967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:298-471
               
               
               Cow position:chr27:6350909-6350728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:305-466
               
               
               Cow position:chr27:1183943-1183781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:309-471
               
               
               Cow position:chr27:4011622-4011780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:309-471
               
               
               Cow position:chr27:22268444-22268602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:310-466
               
               
               Cow position:chr27:20570064-20570218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:310-471
               
               
               Cow position:chr27:14902707-14902551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr27:29283462-29283307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:310-475
               
               
               Cow position:chr27:29236524-29236686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-477
               
               
               Cow position:chr27:26398312-26398150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):159, 27

               
               
               Conread position:315-471
               
               
               Cow position:chr27:10395308-10395157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:319-466
               
               
               Cow position:chr27:25790759-25790900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:348-475
               
               
               Cow position:chr27:27550764-27550637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:354-466
               
               
               Cow position:chr27:27003290-27003180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:364-477
               
               
               Cow position:chr27:29399809-29399925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:155-368
               
               
               Cow position:chr28:9294309-9294532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 198

               
               
               Conread position:155-418
               
               
               Cow position:chr28:19253661-19253394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:155-434
               
               
               Cow position:chr28:26372923-26372628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:155-461
               
               
               Cow position:chr28:15081738-15082055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 188

               
               
               Conread position:155-465
               
               
               Cow position:chr28:21570359-21570054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):154, 25

               
               
               Conread position:155-475
               
               
               Cow position:chr28:23676316-23675992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 187

               
               
               Conread position:155-476
               
               
               Cow position:chr28:17601691-17602018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 193

               
               
               Conread position:158-461
               
               
               Cow position:chr28:25564263-25563951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:162-437
               
               
               Cow position:chr28:9237490-9237207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 178

               
               
               Conread position:163-401
               
               
               Cow position:chr28:31165807-31166055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 189

               
               
               Conread position:163-420
               
               
               Cow position:chr28:7539983-7540248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 55

               
               
               Conread position:163-443
               
               
               Cow position:chr28:5827125-5826838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:163-447
               
               
               Cow position:chr28:10588839-10589136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 196

               
               
               Conread position:163-461
               
               
               Cow position:chr28:24343547-24343241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:163-464
               
               
               Cow position:chr28:6643105-6643409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 189

               
               
               Conread position:163-466
               
               
               Cow position:chr28:33284934-33285247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 190

               
               
               Conread position:163-471
               
               
               Cow position:chr28:7865499-7865185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:163-471
               
               
               Cow position:chr28:18934629-18934316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-475
               
               
               Cow position:chr28:5474857-5475178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:163-475
               
               
               Cow position:chr28:26719524-26719208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-477
               
               
               Cow position:chr28:24996424-24996734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:164-332
               
               
               Cow position:chr28:2762365-2762188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:164-465
               
               
               Cow position:chr28:20963354-20963662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:164-466
               
               
               Cow position:chr28:616562-616250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:164-466
               
               
               Cow position:chr28:13176532-13176809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):184, 47

               
               
               Conread position:164-466
               
               
               Cow position:chr28:32366011-32365712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:164-471
               
               
               Cow position:chr28:14508194-14508510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 195

               
               
               Conread position:164-471
               
               
               Cow position:chr28:22571491-22571804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:165-454
               
               
               Cow position:chr28:3914897-3914587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 190

               
               
               Conread position:165-475
               
               
               Cow position:chr28:9176586-9176898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:165-475
               
               
               Cow position:chr28:13866015-13865696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 140

               
               
               Conread position:166-391
               
               
               Cow position:chr28:7805254-7805484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:169-421
               
               
               Cow position:chr28:32370702-32370966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:170-408
               
               
               Cow position:chr28:7157003-7156764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:183-461
               
               
               Cow position:chr28:32844778-32845063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:187-477
               
               
               Cow position:chr28:23668629-23668936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 164

               
               
               Conread position:192-466
               
               
               Cow position:chr28:23724325-23724589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:204-466
               
               
               Cow position:chr28:25596752-25596498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:213-391
               
               
               Cow position:chr28:20397255-20397430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-419
               
               
               Cow position:chr28:11559517-11559721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:213-420
               
               
               Cow position:chr28:25677226-25677435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:213-431
               
               
               Cow position:chr28:19222036-19222250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 116

               
               
               Conread position:213-443
               
               
               Cow position:chr28:3011155-3011385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:213-443
               
               
               Cow position:chr28:4881125-4881349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-443
               
               
               Cow position:chr28:5166882-5166654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr28:7372007-7372233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-443
               
               
               Cow position:chr28:27161212-27161440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-448
               
               
               Cow position:chr28:10053210-10053450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 103

               
               
               Conread position:213-451
               
               
               Cow position:chr28:21355346-21355104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr28:8140597-8140359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-457
               
               
               Cow position:chr28:32174744-32174505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:213-464
               
               
               Cow position:chr28:7008863-7009107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-465
               
               
               Cow position:chr28:3746317-3746072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):211, 113

               
               
               Conread position:213-466
               
               
               Cow position:chr28:3143763-3144026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr28:5144406-5144656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-466
               
               
               Cow position:chr28:19025890-19026146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr28:19262472-19262723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-467
               
               
               Cow position:chr28:662223-661975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:213-467
               
               
               Cow position:chr28:34230343-34230095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr28:1632542-1632794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr28:3492669-3492924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr28:7697867-7698120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr28:9636342-9636592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-471
               
               
               Cow position:chr28:11426428-11426681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:213-471
               
               
               Cow position:chr28:11884406-11884659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr28:22321534-22321286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr28:26743741-26743479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:213-473
               
               
               Cow position:chr28:11346372-11346627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr28:2752379-2752645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:213-475
               
               
               Cow position:chr28:5204310-5204051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-475
               
               
               Cow position:chr28:5817957-5817698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr28:26922253-26922513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr28:30326976-30327239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:213-475
               
               
               Cow position:chr28:31649188-31648925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:213-477
               
               
               Cow position:chr28:6059355-6059615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 108

               
               
               Conread position:213-477
               
               
               Cow position:chr28:24966502-24966246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:215-471
               
               
               Cow position:chr28:15043749-15044000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:215-471
               
               
               Cow position:chr28:20313390-20313133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:216-441
               
               
               Cow position:chr28:17398122-17398335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 120

               
               
               Conread position:216-441
               
               
               Cow position:chr28:17414363-17414576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 120

               
               
               Conread position:216-465
               
               
               Cow position:chr28:4763990-4763741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:216-475
               
               
               Cow position:chr28:4307786-4308054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:217-471
               
               
               Cow position:chr28:4016644-4016399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:217-471
               
               
               Cow position:chr28:7228280-7228522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:218-397
               
               
               Cow position:chr28:4823714-4823541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:218-441
               
               
               Cow position:chr28:19564118-19564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:218-452
               
               
               Cow position:chr28:11079413-11079185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:218-471
               
               
               Cow position:chr28:20124895-20124644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:218-477
               
               
               Cow position:chr28:33052148-33051882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:219-416
               
               
               Cow position:chr28:30865525-30865335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-419
               
               
               Cow position:chr28:8147756-8147949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:219-465
               
               
               Cow position:chr28:31109896-31110139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:219-466
               
               
               Cow position:chr28:14512641-14512388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr28:23007622-23007868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr28:25249462-25249215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:220-475
               
               
               Cow position:chr28:26103807-26103567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:221-402
               
               
               Cow position:chr28:17012191-17012362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:221-411
               
               
               Cow position:chr28:28765797-28765984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-424
               
               
               Cow position:chr28:4045950-4045760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:221-465
               
               
               Cow position:chr28:13608003-13607754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:221-465
               
               
               Cow position:chr28:23530980-23530735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr28:4834739-4834976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:221-466
               
               
               Cow position:chr28:5436972-5437222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:221-466
               
               
               Cow position:chr28:8347837-8347596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr28:8408841-8408600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:221-466
               
               
               Cow position:chr28:10999562-10999807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 196

               
               
               Conread position:221-466
               
               
               Cow position:chr28:18759938-18760181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:221-466
               
               
               Cow position:chr28:21598145-21598388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:221-466
               
               
               Cow position:chr28:22346127-22345885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr28:25806680-25806437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:221-471
               
               
               Cow position:chr28:4159061-4158819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr28:6971242-6971483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr28:9285260-9285513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:221-471
               
               
               Cow position:chr28:21868563-21868316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-473
               
               
               Cow position:chr28:13474406-13474156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr28:10529384-10529629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:221-475
               
               
               Cow position:chr28:23410217-23410474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr28:24082376-24082122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:222-471
               
               
               Cow position:chr28:11786612-11786852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:223-475
               
               
               Cow position:chr28:9100041-9099791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:228-446
               
               
               Cow position:chr28:25128986-25128768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:228-466
               
               
               Cow position:chr28:8022003-8022243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:228-466
               
               
               Cow position:chr28:18186656-18186420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:229-466
               
               
               Cow position:chr28:4841291-4841526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:229-472
               
               
               Cow position:chr28:13693847-13693610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:229-475
               
               
               Cow position:chr28:8787638-8787396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:230-466
               
               
               Cow position:chr28:4282393-4282624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:230-466
               
               
               Cow position:chr28:5236506-5236733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:237-443
               
               
               Cow position:chr28:21103737-21103948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:237-459
               
               
               Cow position:chr28:25727463-25727249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:237-471
               
               
               Cow position:chr28:4643679-4643902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:237-471
               
               
               Cow position:chr28:27218413-27218185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:237-475
               
               
               Cow position:chr28:3023822-3024060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:238-435
               
               
               Cow position:chr28:5792798-5792602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:238-459
               
               
               Cow position:chr28:11866575-11866792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:238-464
               
               
               Cow position:chr28:23621627-23621415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:238-465
               
               
               Cow position:chr28:21380972-21380745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:238-466
               
               
               Cow position:chr28:3449393-3449165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr28:21363830-21363612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:238-471
               
               
               Cow position:chr28:4884163-4884402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:238-471
               
               
               Cow position:chr28:25283284-25283068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):201, 51

               
               
               Conread position:238-471
               
               
               Cow position:chr28:26982648-26982882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:238-472
               
               
               Cow position:chr28:34877890-34878112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):186, 49

               
               
               Conread position:238-477
               
               
               Cow position:chr28:25728284-25728053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:239-465
               
               
               Cow position:chr28:5931441-5931219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:239-466
               
               
               Cow position:chr28:9426261-9426486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:239-471
               
               
               Cow position:chr28:16110026-16109802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:240-475
               
               
               Cow position:chr28:11817878-11818105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):5, 98

               
               
               Conread position:241-471
               
               
               Cow position:chr28:4536546-4536317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:242-461
               
               
               Cow position:chr28:12430691-12430478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:243-465
               
               
               Cow position:chr28:2960745-2960965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:243-471
               
               
               Cow position:chr28:11752054-11752280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:243-475
               
               
               Cow position:chr28:5128643-5128874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:247-410
               
               
               Cow position:chr28:3160872-3161032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:247-446
               
               
               Cow position:chr28:10606553-10606743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):177, 41

               
               
               Conread position:247-466
               
               
               Cow position:chr28:2862949-2862731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:247-471
               
               
               Cow position:chr28:26685198-26684977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:247-471
               
               
               Cow position:chr28:30746649-30746867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 62

               
               
               Conread position:247-475
               
               
               Cow position:chr28:17235655-17235875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):74, 64

               
               
               Conread position:248-443
               
               
               Cow position:chr28:15263638-15263829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:248-460
               
               
               Cow position:chr28:27313652-27313873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:250-460
               
               
               Cow position:chr28:10745292-10745081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:250-460
               
               
               Cow position:chr28:18625312-18625097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:250-477
               
               
               Cow position:chr28:18354255-18354470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:251-466
               
               
               Cow position:chr28:34430346-34430557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:252-477
               
               
               Cow position:chr28:24672341-24672119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:253-471
               
               
               Cow position:chr28:21502467-21502255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:254-465
               
               
               Cow position:chr28:15577188-15577394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):163, 53

               
               
               Conread position:254-470
               
               
               Cow position:chr28:2814435-2814638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:255-442
               
               
               Cow position:chr28:3726957-3726772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:255-454
               
               
               Cow position:chr28:5193401-5193196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:257-461
               
               
               Cow position:chr28:30809560-30809358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:257-465
               
               
               Cow position:chr28:19079774-19079978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:258-460
               
               
               Cow position:chr28:10057517-10057720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:259-450
               
               
               Cow position:chr28:3484648-3484459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:259-460
               
               
               Cow position:chr28:7512515-7512716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 80

               
               
               Conread position:259-477
               
               
               Cow position:chr28:7548989-7549205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:262-471
               
               
               Cow position:chr28:4058048-4057844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:271-465
               
               
               Cow position:chr28:3714858-3714668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:281-471
               
               
               Cow position:chr28:16252813-16253000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:286-475
               
               
               Cow position:chr28:15008214-15008017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:289-471
               
               
               Cow position:chr28:25424255-25424438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:292-476
               
               
               Cow position:chr28:28903627-28903817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:297-443
               
               
               Cow position:chr28:3105286-3105138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:300-474
               
               
               Cow position:chr28:5552912-5553086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:309-473
               
               
               Cow position:chr28:19024163-19023996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:310-454
               
               
               Cow position:chr28:118035-118176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr28:4022403-4022245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:310-471
               
               
               Cow position:chr28:4880249-4880403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:313-457
               
               
               Cow position:chr28:19394631-19394491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:313-471
               
               
               Cow position:chr28:22170695-22170857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:315-471
               
               
               Cow position:chr28:9390353-9390502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:315-475
               
               
               Cow position:chr28:22739802-22739649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:319-466
               
               
               Cow position:chr28:26784457-26784601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:330-453
               
               
               Cow position:chr28:16214901-16215026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:354-465
               
               
               Cow position:chr28:6051711-6051602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:356-465
               
               
               Cow position:chr28:16243783-16243892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:364-471
               
               
               Cow position:chr28:11451496-11451603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:144-461
               
               
               Cow position:chr29:35442273-35442598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):20, 216

               
               
               Conread position:144-475
               
               
               Cow position:chr29:11053685-11054010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:145-466
               
               
               Cow position:chr29:19907537-19907216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:152-475
               
               
               Cow position:chr29:22895907-22895571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 200

               
               
               Conread position:154-465
               
               
               Cow position:chr29:31926120-31926430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:155-435
               
               
               Cow position:chr29:8862303-8862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):64, 139

               
               
               Conread position:155-465
               
               
               Cow position:chr29:1229766-1229471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):154, 52

               
               
               Conread position:155-475
               
               
               Cow position:chr29:11366410-11366090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:156-475
               
               
               Cow position:chr29:32655248-32655576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:157-473
               
               
               Cow position:chr29:12762130-12761809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):69, 189

               
               
               Conread position:158-443
               
               
               Cow position:chr29:12625805-12626098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 187

               
               
               Conread position:162-475
               
               
               Cow position:chr29:16309910-16309590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:163-407
               
               
               Cow position:chr29:21186705-21186956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:163-409
               
               
               Cow position:chr29:6208229-6207980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:163-413
               
               
               Cow position:chr29:13487110-13486861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:163-420
               
               
               Cow position:chr29:22721541-22721278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 187

               
               
               Conread position:163-454
               
               
               Cow position:chr29:13634132-13634427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:163-459
               
               
               Cow position:chr29:18021514-18021812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):56, 151

               
               
               Conread position:163-465
               
               
               Cow position:chr29:4367892-4367580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:163-465
               
               
               Cow position:chr29:16657879-16657548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:163-466
               
               
               Cow position:chr29:11787954-11787655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:163-471
               
               
               Cow position:chr29:6926169-6925866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:163-471
               
               
               Cow position:chr29:24603965-24604293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:163-472
               
               
               Cow position:chr29:31593969-31594277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:163-477
               
               
               Cow position:chr29:28195345-28195666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:164-415
               
               
               Cow position:chr29:21265928-21265672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 53

               
               
               Conread position:164-464
               
               
               Cow position:chr29:6772297-6771993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:164-465
               
               
               Cow position:chr29:12451530-12451234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 5

               
               
               Conread position:164-465
               
               
               Cow position:chr29:44681945-44682237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 142

               
               
               Conread position:164-466
               
               
               Cow position:chr29:40337374-40337668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 166

               
               
               Conread position:164-466
               
               
               Cow position:chr29:44008620-44008923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 62

               
               
               Conread position:164-470
               
               
               Cow position:chr29:32963710-32963413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:164-471
               
               
               Cow position:chr29:27873751-27873457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:164-471
               
               
               Cow position:chr29:39111137-39111461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:164-473
               
               
               Cow position:chr29:5947646-5947940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:164-474
               
               
               Cow position:chr29:7663105-7663419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:165-391
               
               
               Cow position:chr29:30350764-30351001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 181

               
               
               Conread position:165-443
               
               
               Cow position:chr29:4444885-4444596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:165-471
               
               
               Cow position:chr29:4085482-4085173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 147

               
               
               Conread position:166-471
               
               
               Cow position:chr29:39023172-39023491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 206

               
               
               Conread position:166-475
               
               
               Cow position:chr29:15940472-15940788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 177

               
               
               Conread position:167-475
               
               
               Cow position:chr29:26985392-26985073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:170-454
               
               
               Cow position:chr29:17154943-17154637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:171-471
               
               
               Cow position:chr29:16958-17250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:173-416
               
               
               Cow position:chr29:30713558-30713800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:174-466
               
               
               Cow position:chr29:356479-356184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:180-470
               
               
               Cow position:chr29:18073092-18072788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:184-474
               
               
               Cow position:chr29:13126972-13127274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:187-448
               
               
               Cow position:chr29:9512405-9512144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:188-475
               
               
               Cow position:chr29:10235000-10235281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:198-467
               
               
               Cow position:chr29:21196526-21196796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:199-465
               
               
               Cow position:chr29:25923829-25924108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:206-405
               
               
               Cow position:chr29:8004812-8005003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:208-471
               
               
               Cow position:chr29:1022408-1022147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:208-471
               
               
               Cow position:chr29:16195953-16195703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):232, 89

               
               
               Conread position:208-477
               
               
               Cow position:chr29:26559133-26559394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:209-471
               
               
               Cow position:chr29:35292205-35291944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:210-465
               
               
               Cow position:chr29:650396-650138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:212-475
               
               
               Cow position:chr29:8669472-8669211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:213-404
               
               
               Cow position:chr29:13867102-13867291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-405
               
               
               Cow position:chr29:22519019-22519210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-414
               
               
               Cow position:chr29:13373409-13373210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:213-429
               
               
               Cow position:chr29:8926353-8926568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:213-436
               
               
               Cow position:chr29:6015234-6015010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:213-443
               
               
               Cow position:chr29:13028548-13028319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:213-443
               
               
               Cow position:chr29:23874568-23874343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-444
               
               
               Cow position:chr29:26017394-26017623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-444
               
               
               Cow position:chr29:30227174-30227393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr29:5520377-5520629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-452
               
               
               Cow position:chr29:29512033-29512268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:213-452
               
               
               Cow position:chr29:40583893-40583665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):211, 15

               
               
               Conread position:213-454
               
               
               Cow position:chr29:20903182-20903414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 107

               
               
               Conread position:213-454
               
               
               Cow position:chr29:25333353-25333591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-455
               
               
               Cow position:chr29:2262887-2263128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-461
               
               
               Cow position:chr29:706849-707086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr29:11647202-11646955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 148

               
               
               Conread position:213-465
               
               
               Cow position:chr29:16609856-16609601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr29:39567789-39567547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr29:11397819-11398064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr29:11915928-11915679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr29:28166114-28166354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:213-466
               
               
               Cow position:chr29:29057283-29057040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr29:31489427-31489180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr29:38581087-38580838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr29:40097070-40096819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr29:40959741-40959989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr29:86904-87164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr29:463544-463800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:213-471
               
               
               Cow position:chr29:9912283-9912026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr29:13372771-13372519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr29:13639258-13639516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr29:19339109-19338837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 237

               
               
               Conread position:213-471
               
               
               Cow position:chr29:22175789-22175542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:213-471
               
               
               Cow position:chr29:29769243-29769497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:213-471
               
               
               Cow position:chr29:31929095-31928835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:213-471
               
               
               Cow position:chr29:32799604-32799858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr29:34745551-34745808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr29:35084114-35084369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr29:36217220-36216971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:213-471
               
               
               Cow position:chr29:38582076-38581829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr29:42771743-42771505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:213-475
               
               
               Cow position:chr29:2056169-2055905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-475
               
               
               Cow position:chr29:6844524-6844781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:213-475
               
               
               Cow position:chr29:9709803-9709541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr29:40298912-40299164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-475
               
               
               Cow position:chr29:43496148-43495904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:214-442
               
               
               Cow position:chr29:42886650-42886438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:215-400
               
               
               Cow position:chr29:7103664-7103480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:215-419
               
               
               Cow position:chr29:24578973-24578764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 152

               
               
               Conread position:215-467
               
               
               Cow position:chr29:6217439-6217690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:215-471
               
               
               Cow position:chr29:4334824-4334581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 75

               
               
               Conread position:216-443
               
               
               Cow position:chr29:25475028-25474801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:216-443
               
               
               Cow position:chr29:28775358-28775576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):208, 95

               
               
               Conread position:216-466
               
               
               Cow position:chr29:44378314-44378560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:216-471
               
               
               Cow position:chr29:6293375-6293622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:216-475
               
               
               Cow position:chr29:11562722-11562463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):6, 143

               
               
               Conread position:218-464
               
               
               Cow position:chr29:749794-750046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:218-466
               
               
               Cow position:chr29:12680258-12680017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr29:35458669-35458921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 58

               
               
               Conread position:219-432
               
               
               Cow position:chr29:28993963-28993753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:219-461
               
               
               Cow position:chr29:26615616-26615858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr29:19821384-19821146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr29:24952786-24952542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-477
               
               
               Cow position:chr29:1325540-1325288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:221-466
               
               
               Cow position:chr29:19428770-19428517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:221-470
               
               
               Cow position:chr29:17222513-17222267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):88, 112

               
               
               Conread position:221-471
               
               
               Cow position:chr29:2984989-2984738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr29:6337760-6337514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:221-471
               
               
               Cow position:chr29:9139516-9139263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:221-471
               
               
               Cow position:chr29:11434218-11433976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr29:11705222-11704979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:221-471
               
               
               Cow position:chr29:12025366-12025617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:221-471
               
               
               Cow position:chr29:23243779-23244026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr29:26416450-26416214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr29:29314550-29314801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:221-471
               
               
               Cow position:chr29:35501555-35501797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr29:1395693-1395444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:221-475
               
               
               Cow position:chr29:9638221-9638467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-477
               
               
               Cow position:chr29:17409434-17409177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:221-477
               
               
               Cow position:chr29:32290708-32290449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:222-438
               
               
               Cow position:chr29:45589485-45589703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:228-388
               
               
               Cow position:chr29:26263929-26263772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-466
               
               
               Cow position:chr29:4520429-4520194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:228-466
               
               
               Cow position:chr29:22162156-22162394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr29:23983862-23984105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:228-472
               
               
               Cow position:chr29:5186400-5186642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:228-476
               
               
               Cow position:chr29:24624341-24624095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:228-477
               
               
               Cow position:chr29:6870672-6870940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:229-435
               
               
               Cow position:chr29:40994799-40995001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:229-464
               
               
               Cow position:chr29:13554228-13553995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:229-466
               
               
               Cow position:chr29:6286069-6286300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:229-466
               
               
               Cow position:chr29:32521962-32521731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:229-467
               
               
               Cow position:chr29:23698070-23697833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:229-471
               
               
               Cow position:chr29:28868735-28868490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:230-433
               
               
               Cow position:chr29:5046744-5046543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:230-443
               
               
               Cow position:chr29:23389466-23389675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:237-465
               
               
               Cow position:chr29:37618390-37618166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:237-466
               
               
               Cow position:chr29:24292952-24292727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:237-475
               
               
               Cow position:chr29:22068656-22068903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:238-441
               
               
               Cow position:chr29:41530933-41530730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-443
               
               
               Cow position:chr29:21941684-21941480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:238-447
               
               
               Cow position:chr29:43251084-43251291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:238-454
               
               
               Cow position:chr29:4120937-4120713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:238-461
               
               
               Cow position:chr29:40853011-40852800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr29:12783881-12784103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:238-471
               
               
               Cow position:chr29:21443255-21443490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:238-471
               
               
               Cow position:chr29:25088826-25088607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:238-471
               
               
               Cow position:chr29:27329976-27329747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr29:30188269-30188486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):186, 56

               
               
               Conread position:238-471
               
               
               Cow position:chr29:41365192-41364964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:238-472
               
               
               Cow position:chr29:36220617-36220381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 135

               
               
               Conread position:238-477
               
               
               Cow position:chr29:2744184-2744425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:239-466
               
               
               Cow position:chr29:22613512-22613285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:242-471
               
               
               Cow position:chr29:17668566-17668353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:242-471
               
               
               Cow position:chr29:25092185-25091966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:243-466
               
               
               Cow position:chr29:27589001-27588782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:243-475
               
               
               Cow position:chr29:30441015-30440773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:245-468
               
               
               Cow position:chr29:18462475-18462698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:247-447
               
               
               Cow position:chr29:22936344-22936145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:247-466
               
               
               Cow position:chr29:22778102-22778319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:247-471
               
               
               Cow position:chr29:24103467-24103691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:248-460
               
               
               Cow position:chr29:29795309-29795523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-474
               
               
               Cow position:chr29:2071496-2071724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:249-460
               
               
               Cow position:chr29:10018651-10018439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:250-454
               
               
               Cow position:chr29:26270138-26269937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:250-466
               
               
               Cow position:chr29:31674704-31674489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr29:868846-868627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr29:3100196-3100404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):174, 54

               
               
               Conread position:250-471
               
               
               Cow position:chr29:15738269-15738487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:253-466
               
               
               Cow position:chr29:26986995-26986791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:253-466
               
               
               Cow position:chr29:36530935-36530726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:254-466
               
               
               Cow position:chr29:17297203-17296990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:255-459
               
               
               Cow position:chr29:36183347-36183146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:255-477
               
               
               Cow position:chr29:18735573-18735792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:259-477
               
               
               Cow position:chr29:26771501-26771283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:262-465
               
               
               Cow position:chr29:4051929-4052124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:264-476
               
               
               Cow position:chr29:17301591-17301378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:266-453
               
               
               Cow position:chr29:43956947-43956764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:268-475
               
               
               Cow position:chr29:478161-477951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:276-475
               
               
               Cow position:chr29:21534627-21534831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:280-471
               
               
               Cow position:chr29:14484496-14484692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:289-464
               
               
               Cow position:chr29:45384160-45383986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:301-443
               
               
               Cow position:chr29:11489703-11489841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:302-471
               
               
               Cow position:chr29:40615502-40615669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:307-475
               
               
               Cow position:chr29:37292789-37292628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:311-451
               
               
               Cow position:chr29:4194097-4194247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:313-477
               
               
               Cow position:chr29:11696537-11696378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:316-477
               
               
               Cow position:chr29:12798923-12798767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:338-471
               
               
               Cow position:chr29:3396091-3395960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:339-473
               
               
               Cow position:chr29:24197659-24197790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:355-475
               
               
               Cow position:chr29:585245-585126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:361-475
               
               
               Cow position:chr29:94589-94704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:133-335
               
               
               Cow position:chr3:57846754-57846969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:140-466
               
               
               Cow position:chr3:23091810-23092142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:140-466
               
               
               Cow position:chr3:50614814-50614474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 211

               
               
               Conread position:143-475
               
               
               Cow position:chr3:4050367-4050018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:144-470
               
               
               Cow position:chr3:56637818-56637503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:145-472
               
               
               Cow position:chr3:11919874-11920200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:145-477
               
               
               Cow position:chr3:37186991-37186654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 206

               
               
               Conread position:146-466
               
               
               Cow position:chr3:67744459-67744786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:155-332
               
               
               Cow position:chr3:3698818-3698623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:155-440
               
               
               Cow position:chr3:67520002-67520310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:155-444
               
               
               Cow position:chr3:3036768-3037074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):64, 198

               
               
               Conread position:155-465
               
               
               Cow position:chr3:12255626-12255316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:155-465
               
               
               Cow position:chr3:53588229-53588549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 197

               
               
               Conread position:155-471
               
               
               Cow position:chr3:8393513-8393182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:155-471
               
               
               Cow position:chr3:36418314-36418634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):117, 75

               
               
               Conread position:155-475
               
               
               Cow position:chr3:61322991-61322671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:162-466
               
               
               Cow position:chr3:26553573-26553879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:162-471
               
               
               Cow position:chr3:54435134-54434807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 198

               
               
               Conread position:163-332
               
               
               Cow position:chr3:51349963-51349787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:163-375
               
               
               Cow position:chr3:41550229-41550450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:163-391
               
               
               Cow position:chr3:39873543-39873786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:163-397
               
               
               Cow position:chr3:9074199-9074440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 188

               
               
               Conread position:163-400
               
               
               Cow position:chr3:3818929-3818697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:163-402
               
               
               Cow position:chr3:56483666-56483414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-406
               
               
               Cow position:chr3:28238438-28238675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:163-438
               
               
               Cow position:chr3:74846560-74846847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 189

               
               
               Conread position:163-441
               
               
               Cow position:chr3:60389917-60389628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:163-443
               
               
               Cow position:chr3:3889412-3889708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 143

               
               
               Conread position:163-443
               
               
               Cow position:chr3:5365830-5365536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 199

               
               
               Conread position:163-454
               
               
               Cow position:chr3:25477957-25477664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:163-459
               
               
               Cow position:chr3:73741723-73742011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:163-464
               
               
               Cow position:chr3:4456931-4457233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:163-465
               
               
               Cow position:chr3:54340276-54340572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 181

               
               
               Conread position:163-465
               
               
               Cow position:chr3:58764921-58765239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 194

               
               
               Conread position:163-465
               
               
               Cow position:chr3:74533499-74533190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 173

               
               
               Conread position:163-466
               
               
               Cow position:chr3:72585-72251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:163-466
               
               
               Cow position:chr3:2199029-2198719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-466
               
               
               Cow position:chr3:58175046-58174741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:163-466
               
               
               Cow position:chr3:58767398-58767106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):146, 43

               
               
               Conread position:163-466
               
               
               Cow position:chr3:76922508-76922826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:163-467
               
               
               Cow position:chr3:24872857-24872551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:163-471
               
               
               Cow position:chr3:13577054-13577354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:163-471
               
               
               Cow position:chr3:26904264-26903947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 142

               
               
               Conread position:163-471
               
               
               Cow position:chr3:34669598-34669896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 31

               
               
               Conread position:163-471
               
               
               Cow position:chr3:73764050-73764364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 128

               
               
               Conread position:163-471
               
               
               Cow position:chr3:80818847-80818560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:163-472
               
               
               Cow position:chr3:18725498-18725804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:163-474
               
               
               Cow position:chr3:5374474-5374161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr3:18216630-18216939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:163-475
               
               
               Cow position:chr3:24353005-24352688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:163-475
               
               
               Cow position:chr3:38347326-38347028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):146, 125

               
               
               Conread position:163-477
               
               
               Cow position:chr3:13329628-13329952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:163-477
               
               
               Cow position:chr3:27212483-27212187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):261, 64

               
               
               Conread position:163-477
               
               
               Cow position:chr3:46541686-46542001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:164-419
               
               
               Cow position:chr3:3649075-3649334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 188

               
               
               Conread position:164-439
               
               
               Cow position:chr3:61116707-61116995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):53, 156

               
               
               Conread position:164-446
               
               
               Cow position:chr3:20993959-20993667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 183

               
               
               Conread position:164-454
               
               
               Cow position:chr3:48629448-48629746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:164-454
               
               
               Cow position:chr3:51492929-51492629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:164-460
               
               
               Cow position:chr3:59101955-59101671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 47

               
               
               Conread position:164-461
               
               
               Cow position:chr3:58973440-58973145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 182

               
               
               Conread position:164-465
               
               
               Cow position:chr3:3736445-3736126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:164-465
               
               
               Cow position:chr3:20471221-20471524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:164-471
               
               
               Cow position:chr3:116329-116029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 178

               
               
               Conread position:164-473
               
               
               Cow position:chr3:29360000-29360311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:164-474
               
               
               Cow position:chr3:83491244-83490914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 199

               
               
               Conread position:164-475
               
               
               Cow position:chr3:27532516-27532835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:164-475
               
               
               Cow position:chr3:42480759-42480446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:164-475
               
               
               Cow position:chr3:42584683-42584369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:165-465
               
               
               Cow position:chr3:54862278-54862581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:166-464
               
               
               Cow position:chr3:18687063-18686746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 192

               
               
               Conread position:166-466
               
               
               Cow position:chr3:11712103-11711794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:166-466
               
               
               Cow position:chr3:62884340-62884043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:167-465
               
               
               Cow position:chr3:28478218-28477926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:167-475
               
               
               Cow position:chr3:64172583-64172268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:167-475
               
               
               Cow position:chr3:77225254-77224943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:170-418
               
               
               Cow position:chr3:53091623-53091375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:170-471
               
               
               Cow position:chr3:54946257-54945960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):140, 34

               
               
               Conread position:173-437
               
               
               Cow position:chr3:34271054-34270780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:174-466
               
               
               Cow position:chr3:50348088-50347803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:174-471
               
               
               Cow position:chr3:56476804-56476512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:183-471
               
               
               Cow position:chr3:23105247-23105534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):126, 23

               
               
               Conread position:187-465
               
               
               Cow position:chr3:66707947-66708234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:187-475
               
               
               Cow position:chr3:8394061-8393762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:188-475
               
               
               Cow position:chr3:8457776-8457482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:190-476
               
               
               Cow position:chr3:45648251-45647959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:192-472
               
               
               Cow position:chr3:51233989-51234266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):115, 143

               
               
               Conread position:193-466
               
               
               Cow position:chr3:33327826-33327541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:198-466
               
               
               Cow position:chr3:26218949-26219213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:198-471
               
               
               Cow position:chr3:45534197-45534464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:198-471
               
               
               Cow position:chr3:46901298-46901028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:200-430
               
               
               Cow position:chr3:14194080-14194307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:200-441
               
               
               Cow position:chr3:15228724-15228958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 132

               
               
               Conread position:200-467
               
               
               Cow position:chr3:55010066-55010330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):109, 116

               
               
               Conread position:203-465
               
               
               Cow position:chr3:57764315-57764065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:204-471
               
               
               Cow position:chr3:74234281-74234028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:205-461
               
               
               Cow position:chr3:2850796-2851053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:206-419
               
               
               Cow position:chr3:58317855-58318070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 147

               
               
               Conread position:206-473
               
               
               Cow position:chr3:30222284-30222015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 135

               
               
               Conread position:207-409
               
               
               Cow position:chr3:45972355-45972557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:207-419
               
               
               Cow position:chr3:75048017-75047801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:208-466
               
               
               Cow position:chr3:61840365-61840114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:208-471
               
               
               Cow position:chr3:68881033-68881280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:208-477
               
               
               Cow position:chr3:35852380-35852643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:210-409
               
               
               Cow position:chr3:45897698-45897499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:210-454
               
               
               Cow position:chr3:59474211-59473968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:210-461
               
               
               Cow position:chr3:57274150-57273908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:210-466
               
               
               Cow position:chr3:51255879-51255624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:210-471
               
               
               Cow position:chr3:53318489-53318235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:212-443
               
               
               Cow position:chr3:71238555-71238332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:212-444
               
               
               Cow position:chr3:83215349-83215117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:212-454
               
               
               Cow position:chr3:8733272-8733508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):195, 72

               
               
               Conread position:212-465
               
               
               Cow position:chr3:58968818-58969063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:212-466
               
               
               Cow position:chr3:26920997-26920745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:212-477
               
               
               Cow position:chr3:43727168-43726905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:213-347
               
               
               Cow position:chr3:11292162-11292300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-355
               
               
               Cow position:chr3:56704235-56704382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:213-374
               
               
               Cow position:chr3:61467104-61467264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-390
               
               
               Cow position:chr3:74900557-74900726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-391
               
               
               Cow position:chr3:53703878-53704055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-411
               
               
               Cow position:chr3:55984184-55983986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:213-413
               
               
               Cow position:chr3:27727745-27727940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:213-418
               
               
               Cow position:chr3:33693905-33693702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-430
               
               
               Cow position:chr3:54739801-54740017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 56

               
               
               Conread position:213-435
               
               
               Cow position:chr3:84175737-84175959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-442
               
               
               Cow position:chr3:59621562-59621785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-443
               
               
               Cow position:chr3:15443643-15443870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr3:21014870-21015103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-443
               
               
               Cow position:chr3:48900247-48900479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:213-443
               
               
               Cow position:chr3:73820285-73820511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:213-449
               
               
               Cow position:chr3:5366854-5366623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-451
               
               
               Cow position:chr3:22221413-22221170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:213-452
               
               
               Cow position:chr3:79645344-79645594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr3:3032494-3032252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-454
               
               
               Cow position:chr3:23920343-23920582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-458
               
               
               Cow position:chr3:75050532-75050775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:213-460
               
               
               Cow position:chr3:24468299-24468536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-460
               
               
               Cow position:chr3:76267889-76268139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 135

               
               
               Conread position:213-461
               
               
               Cow position:chr3:9663086-9663330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-461
               
               
               Cow position:chr3:73709132-73708890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-461
               
               
               Cow position:chr3:77582192-77581950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:213-462
               
               
               Cow position:chr3:15153777-15153533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-462
               
               
               Cow position:chr3:61144182-61143941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:213-464
               
               
               Cow position:chr3:59610632-59610882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:213-464
               
               
               Cow position:chr3:65237110-65236862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr3:38691320-38691571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:213-465
               
               
               Cow position:chr3:57624550-57624301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr3:65058784-65058540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-465
               
               
               Cow position:chr3:77271192-77271435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr3:82461265-82461015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr3:6873166-6873407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr3:12711829-12712082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr3:14263478-14263229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr3:48296784-48296546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr3:49790726-49790974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr3:53046577-53046822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr3:55124197-55124441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:213-466
               
               
               Cow position:chr3:55189668-55189919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr3:59630427-59630665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):211, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr3:59883983-59884236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-466
               
               
               Cow position:chr3:61169885-61169637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr3:71238239-71237993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:213-466
               
               
               Cow position:chr3:73467721-73467459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:213-466
               
               
               Cow position:chr3:74134790-74134542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 142

               
               
               Conread position:213-466
               
               
               Cow position:chr3:80565052-80564800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr3:83815702-83815952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr3:84596879-84597123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-467
               
               
               Cow position:chr3:46005936-46006191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:213-469
               
               
               Cow position:chr3:18459442-18459688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 109

               
               
               Conread position:213-470
               
               
               Cow position:chr3:12705458-12705713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr3:210405-210148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr3:1830490-1830737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:213-471
               
               
               Cow position:chr3:2506393-2506645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr3:3985408-3985159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:213-471
               
               
               Cow position:chr3:8061212-8060959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr3:11987415-11987159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:14601618-14601881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr3:15751628-15751890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr3:18067218-18066967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr3:19792991-19792724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:213-471
               
               
               Cow position:chr3:20677756-20678003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr3:26960502-26960759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr3:27274614-27274363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:213-471
               
               
               Cow position:chr3:27940057-27940296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr3:36375454-36375712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:39969776-39970036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:213-471
               
               
               Cow position:chr3:42423242-42423502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:49650474-49650217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:52651994-52652243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr3:53113261-53113005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:53222099-53221846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr3:53875679-53875927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr3:54506793-54506541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 139

               
               
               Conread position:213-471
               
               
               Cow position:chr3:54781918-54782185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr3:55318813-55319071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr3:55712526-55712261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:57760584-57760330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr3:58540436-58540697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:213-471
               
               
               Cow position:chr3:59000671-59000916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr3:65969253-65968990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 149

               
               
               Conread position:213-471
               
               
               Cow position:chr3:66900647-66900910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr3:70401982-70401734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:213-471
               
               
               Cow position:chr3:70762037-70762291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr3:73395202-73394952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr3:78945753-78946001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:213-472
               
               
               Cow position:chr3:17934852-17935103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-473
               
               
               Cow position:chr3:63269308-63269050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-474
               
               
               Cow position:chr3:48241700-48241445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-474
               
               
               Cow position:chr3:54100640-54100894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr3:17134420-17134166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr3:23408272-23408528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:213-475
               
               
               Cow position:chr3:53150417-53150152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-475
               
               
               Cow position:chr3:55970592-55970331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-475
               
               
               Cow position:chr3:60597628-60597368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:213-475
               
               
               Cow position:chr3:71231481-71231221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:213-475
               
               
               Cow position:chr3:71497052-71497318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr3:75045790-75046052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:213-476
               
               
               Cow position:chr3:60264630-60264888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-477
               
               
               Cow position:chr3:48252971-48252709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr3:80581741-80581488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:214-466
               
               
               Cow position:chr3:23444803-23445057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:214-471
               
               
               Cow position:chr3:28908118-28908370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:214-471
               
               
               Cow position:chr3:81471011-81471269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:214-476
               
               
               Cow position:chr3:64010730-64010992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:214-477
               
               
               Cow position:chr3:65413194-65413456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:215-441
               
               
               Cow position:chr3:37041503-37041275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:215-466
               
               
               Cow position:chr3:14626066-14626321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:216-464
               
               
               Cow position:chr3:59597260-59597022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:216-466
               
               
               Cow position:chr3:74502242-74502485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:216-471
               
               
               Cow position:chr3:27696895-27697147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:216-471
               
               
               Cow position:chr3:67930104-67930350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:218-466
               
               
               Cow position:chr3:15051870-15052115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:218-466
               
               
               Cow position:chr3:22232574-22232815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:218-466
               
               
               Cow position:chr3:26982140-26981901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:218-466
               
               
               Cow position:chr3:45647761-45647517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):91, 128

               
               
               Conread position:218-471
               
               
               Cow position:chr3:18393314-18393556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:218-471
               
               
               Cow position:chr3:23168985-23169234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 89

               
               
               Conread position:218-471
               
               
               Cow position:chr3:49328024-49327773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr3:55819841-55819579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 247

               
               
               Conread position:219-460
               
               
               Cow position:chr3:29596468-29596235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:219-466
               
               
               Cow position:chr3:4319790-4319551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-466
               
               
               Cow position:chr3:14465627-14465870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:220-465
               
               
               Cow position:chr3:49218224-49218476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:221-384
               
               
               Cow position:chr3:48477948-48478114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:221-433
               
               
               Cow position:chr3:7661929-7661721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-440
               
               
               Cow position:chr3:17058469-17058678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-441
               
               
               Cow position:chr3:17235129-17235348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:221-451
               
               
               Cow position:chr3:79196836-79196610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-453
               
               
               Cow position:chr3:62789098-62789331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr3:55109536-55109769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr3:55271968-55272199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-458
               
               
               Cow position:chr3:70333884-70334121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:221-459
               
               
               Cow position:chr3:32183943-32184177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:221-461
               
               
               Cow position:chr3:62826542-62826777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:221-462
               
               
               Cow position:chr3:63179930-63179701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-466
               
               
               Cow position:chr3:31850300-31850533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):203, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr3:51578238-51578483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:221-466
               
               
               Cow position:chr3:56059888-56059643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-470
               
               
               Cow position:chr3:55835744-55835992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:5100695-5100935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:9641645-9641397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:14552952-14552710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:17936762-17937003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:26874667-26874422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:50768756-50768514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:66883867-66884109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr3:68707936-68708172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:74079560-74079807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:80053466-80053712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr3:80740639-80740400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr3:56300-56547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr3:29813308-29813070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):149, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr3:68627612-68627858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr3:79292905-79292657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:221-476
               
               
               Cow position:chr3:19585940-19585686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-476
               
               
               Cow position:chr3:62046741-62046484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:221-477
               
               
               Cow position:chr3:77365213-77365473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:222-475
               
               
               Cow position:chr3:70334618-70334876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:222-475
               
               
               Cow position:chr3:74601191-74600939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:223-475
               
               
               Cow position:chr3:76387532-76387773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):201, 61

               
               
               Conread position:226-471
               
               
               Cow position:chr3:68145765-68146011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:228-411
               
               
               Cow position:chr3:65019794-65019974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:228-458
               
               
               Cow position:chr3:7940486-7940713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:228-466
               
               
               Cow position:chr3:45881969-45881746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:228-466
               
               
               Cow position:chr3:49139976-49140205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:228-466
               
               
               Cow position:chr3:67704617-67704379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:228-471
               
               
               Cow position:chr3:3638249-3638018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):196, 74

               
               
               Conread position:228-471
               
               
               Cow position:chr3:10896893-10896664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:228-471
               
               
               Cow position:chr3:48810574-48810805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr3:53739114-53739354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr3:64280859-64281100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:228-471
               
               
               Cow position:chr3:72676162-72675924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:229-443
               
               
               Cow position:chr3:80468608-80468816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:229-465
               
               
               Cow position:chr3:7566349-7566582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:229-466
               
               
               Cow position:chr3:75057066-75057291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:229-471
               
               
               Cow position:chr3:80072199-80071958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:230-434
               
               
               Cow position:chr3:22510094-22509894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:230-466
               
               
               Cow position:chr3:12978548-12978780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 105

               
               
               Conread position:230-466
               
               
               Cow position:chr3:23877069-23876831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:230-466
               
               
               Cow position:chr3:44102037-44101806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:230-467
               
               
               Cow position:chr3:45667275-45667520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:230-471
               
               
               Cow position:chr3:34556171-34556406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:230-471
               
               
               Cow position:chr3:53910177-53909945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:230-471
               
               
               Cow position:chr3:72503827-72504068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:230-471
               
               
               Cow position:chr3:75158424-75158191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:231-466
               
               
               Cow position:chr3:20437588-20437813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:231-475
               
               
               Cow position:chr3:2675097-2674852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):71, 78

               
               
               Conread position:234-471
               
               
               Cow position:chr3:65800648-65800427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:235-431
               
               
               Cow position:chr3:35055910-35056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:236-466
               
               
               Cow position:chr3:66609781-66610006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:236-466
               
               
               Cow position:chr3:75687374-75687602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:236-467
               
               
               Cow position:chr3:57577760-57577531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:237-459
               
               
               Cow position:chr3:28898161-28898380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:237-463
               
               
               Cow position:chr3:72131236-72131455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:237-466
               
               
               Cow position:chr3:31309292-31309518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:237-466
               
               
               Cow position:chr3:72019178-72018952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:237-475
               
               
               Cow position:chr3:16333859-16333629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:237-477
               
               
               Cow position:chr3:20674815-20675054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:238-415
               
               
               Cow position:chr3:12670554-12670726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:238-435
               
               
               Cow position:chr3:27545758-27545955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-441
               
               
               Cow position:chr3:3656575-3656371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-454
               
               
               Cow position:chr3:24935426-24935218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-460
               
               
               Cow position:chr3:66292115-66292334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-461
               
               
               Cow position:chr3:38828818-38828609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:238-461
               
               
               Cow position:chr3:53790476-53790695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:238-465
               
               
               Cow position:chr3:2216429-2216201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:238-465
               
               
               Cow position:chr3:15506509-15506289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:238-465
               
               
               Cow position:chr3:53270891-53270666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-466
               
               
               Cow position:chr3:13301789-13302012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:238-466
               
               
               Cow position:chr3:52863123-52863348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:238-466
               
               
               Cow position:chr3:70609687-70609463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:238-466
               
               
               Cow position:chr3:72391143-72390919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr3:2392907-2393133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:238-471
               
               
               Cow position:chr3:5097268-5097035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr3:37452129-37451898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:238-471
               
               
               Cow position:chr3:73759456-73759684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:238-471
               
               
               Cow position:chr3:78896708-78896481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-473
               
               
               Cow position:chr3:30180147-30179910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:238-475
               
               
               Cow position:chr3:76015353-76015116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:238-477
               
               
               Cow position:chr3:12287293-12287063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:239-419
               
               
               Cow position:chr3:35621361-35621186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:239-471
               
               
               Cow position:chr3:23471399-23471632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 169

               
               
               Conread position:239-471
               
               
               Cow position:chr3:53384220-53384452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 70

               
               
               Conread position:239-471
               
               
               Cow position:chr3:55778096-55777869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:240-441
               
               
               Cow position:chr3:81359048-81359244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:240-471
               
               
               Cow position:chr3:39171427-39171651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:241-477
               
               
               Cow position:chr3:38864184-38863940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 222

               
               
               Conread position:242-465
               
               
               Cow position:chr3:4032020-4031808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:243-454
               
               
               Cow position:chr3:55177690-55177905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:243-471
               
               
               Cow position:chr3:70565682-70565906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:245-473
               
               
               Cow position:chr3:70899945-70899725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):180, 62

               
               
               Conread position:247-440
               
               
               Cow position:chr3:64526900-64526710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:247-443
               
               
               Cow position:chr3:13890529-13890334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-466
               
               
               Cow position:chr3:74878537-74878755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:247-467
               
               
               Cow position:chr3:31046900-31047115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:247-467
               
               
               Cow position:chr3:76713273-76713490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:247-470
               
               
               Cow position:chr3:49460874-49461100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-471
               
               
               Cow position:chr3:32787512-32787292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:247-472
               
               
               Cow position:chr3:13353413-13353192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:247-473
               
               
               Cow position:chr3:34937896-34937668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:247-477
               
               
               Cow position:chr3:14632931-14633159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:248-454
               
               
               Cow position:chr3:79220909-79220698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 71

               
               
               Conread position:248-471
               
               
               Cow position:chr3:53094880-53095104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:248-471
               
               
               Cow position:chr3:60933468-60933248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-473
               
               
               Cow position:chr3:55434380-55434156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:249-466
               
               
               Cow position:chr3:71430154-71430371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:250-443
               
               
               Cow position:chr3:1517463-1517655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-447
               
               
               Cow position:chr3:15954036-15954232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:250-454
               
               
               Cow position:chr3:11199930-11200136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:250-457
               
               
               Cow position:chr3:24548788-24549001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 177

               
               
               Conread position:250-460
               
               
               Cow position:chr3:3913393-3913608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr3:57754427-57754637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr3:67698325-67698122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:250-464
               
               
               Cow position:chr3:67929211-67929425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:250-471
               
               
               Cow position:chr3:17957516-17957294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:250-477
               
               
               Cow position:chr3:25945142-25944906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:253-443
               
               
               Cow position:chr3:74500290-74500097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:254-466
               
               
               Cow position:chr3:68587067-68586858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:256-455
               
               
               Cow position:chr3:46350714-46350517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:256-465
               
               
               Cow position:chr3:19708065-19708267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 53

               
               
               Conread position:256-466
               
               
               Cow position:chr3:22820614-22820405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:259-460
               
               
               Cow position:chr3:53592649-53592854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:259-477
               
               
               Cow position:chr3:26489040-26489259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:261-460
               
               
               Cow position:chr3:36446680-36446874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:264-466
               
               
               Cow position:chr3:15752606-15752794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:264-471
               
               
               Cow position:chr3:44932551-44932344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:266-443
               
               
               Cow position:chr3:80953680-80953505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:266-466
               
               
               Cow position:chr3:43528199-43528400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:266-473
               
               
               Cow position:chr3:59035073-59034861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:268-466
               
               
               Cow position:chr3:29807494-29807302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:268-466
               
               
               Cow position:chr3:69849480-69849669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:268-471
               
               
               Cow position:chr3:33698762-33698557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:269-471
               
               
               Cow position:chr3:41328469-41328281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:269-475
               
               
               Cow position:chr3:42178183-42177986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:270-475
               
               
               Cow position:chr3:15992747-15992542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:271-471
               
               
               Cow position:chr3:31907115-31907309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:273-460
               
               
               Cow position:chr3:55947610-55947422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:274-473
               
               
               Cow position:chr3:53240281-53240095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):195, 32

               
               
               Conread position:277-470
               
               
               Cow position:chr3:77227342-77227155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):147, 42

               
               
               Conread position:280-475
               
               
               Cow position:chr3:39328419-39328223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:282-461
               
               
               Cow position:chr3:52650510-52650689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:282-475
               
               
               Cow position:chr3:17952670-17952483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:283-475
               
               
               Cow position:chr3:14625374-14625566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:289-474
               
               
               Cow position:chr3:80081803-80081994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 173

               
               
               Conread position:292-477
               
               
               Cow position:chr3:59515111-59514930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:294-467
               
               
               Cow position:chr3:77729461-77729288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:298-469
               
               
               Cow position:chr3:15859665-15859833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:298-476
               
               
               Cow position:chr3:27544336-27544507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:300-476
               
               
               Cow position:chr3:53192429-53192597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:308-461
               
               
               Cow position:chr3:44622896-44623043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:309-468
               
               
               Cow position:chr3:27247200-27247354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:309-471
               
               
               Cow position:chr3:73590005-73590167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:310-442
               
               
               Cow position:chr3:3062554-3062423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:310-465
               
               
               Cow position:chr3:41366994-41367146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:319-471
               
               
               Cow position:chr3:16891289-16891130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:319-475
               
               
               Cow position:chr3:49731662-49731815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:331-471
               
               
               Cow position:chr3:10173161-10173299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:336-473
               
               
               Cow position:chr3:78739821-78739686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:348-475
               
               
               Cow position:chr3:15661746-15661877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:353-465
               
               
               Cow position:chr3:11715719-11715603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:358-466
               
               
               Cow position:chr3:26970772-26970664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:110-470
               
               
               Cow position:chr4:3440630-3440255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:139-302
               
               
               Cow position:chr4:37790262-37790101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:140-471
               
               
               Cow position:chr4:10992014-10992351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 166

               
               
               Conread position:143-466
               
               
               Cow position:chr4:10837199-10837527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:144-418
               
               
               Cow position:chr4:61066953-61066675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 161

               
               
               Conread position:144-471
               
               
               Cow position:chr4:44496562-44496227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):81, 209

               
               
               Conread position:146-471
               
               
               Cow position:chr4:29291704-29291367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:148-465
               
               
               Cow position:chr4:50769587-50769912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:154-466
               
               
               Cow position:chr4:65841601-65841909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:155-454
               
               
               Cow position:chr4:54938070-54937752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:155-465
               
               
               Cow position:chr4:8801678-8801356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 139

               
               
               Conread position:155-466
               
               
               Cow position:chr4:9681480-9681153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 195

               
               
               Conread position:155-469
               
               
               Cow position:chr4:34165797-34166128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:155-471
               
               
               Cow position:chr4:17774174-17774506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 192

               
               
               Conread position:155-471
               
               
               Cow position:chr4:44449335-44449662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:155-475
               
               
               Cow position:chr4:13406864-13406549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:155-475
               
               
               Cow position:chr4:56570980-56570647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 192

               
               
               Conread position:156-461
               
               
               Cow position:chr4:53616997-53616693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 195

               
               
               Conread position:157-461
               
               
               Cow position:chr4:14551006-14550708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:158-441
               
               
               Cow position:chr4:6166146-6166428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:162-471
               
               
               Cow position:chr4:21365566-21365253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 140

               
               
               Conread position:163-359
               
               
               Cow position:chr4:65536912-65537108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:163-366
               
               
               Cow position:chr4:31758433-31758219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:163-370
               
               
               Cow position:chr4:38699994-38700211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 184

               
               
               Conread position:163-407
               
               
               Cow position:chr4:63471909-63472162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:163-418
               
               
               Cow position:chr4:44183939-44184210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:163-448
               
               
               Cow position:chr4:55508080-55508370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 171

               
               
               Conread position:163-449
               
               
               Cow position:chr4:36945031-36945324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:163-454
               
               
               Cow position:chr4:23311107-23311394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:163-461
               
               
               Cow position:chr4:51605458-51605750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:163-465
               
               
               Cow position:chr4:16881192-16881509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:163-465
               
               
               Cow position:chr4:22249287-22249591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:163-465
               
               
               Cow position:chr4:25973061-25972751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:163-465
               
               
               Cow position:chr4:27997857-27997541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 220

               
               
               Conread position:163-465
               
               
               Cow position:chr4:58834236-58834548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:163-466
               
               
               Cow position:chr4:12049405-12049098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:163-466
               
               
               Cow position:chr4:31348019-31348337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-466
               
               
               Cow position:chr4:39767512-39767202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:163-466
               
               
               Cow position:chr4:45919196-45918889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:163-466
               
               
               Cow position:chr4:48409104-48409413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-466
               
               
               Cow position:chr4:52088089-52087788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:163-466
               
               
               Cow position:chr4:53209383-53209090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):58, 98

               
               
               Conread position:163-470
               
               
               Cow position:chr4:45234709-45235010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:163-470
               
               
               Cow position:chr4:58858015-58858315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:163-471
               
               
               Cow position:chr4:12561200-12560878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:163-471
               
               
               Cow position:chr4:19314168-19313856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:163-471
               
               
               Cow position:chr4:21371543-21371238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:163-473
               
               
               Cow position:chr4:21065206-21064879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 186

               
               
               Conread position:163-475
               
               
               Cow position:chr4:17378683-17378981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:163-476
               
               
               Cow position:chr4:25370275-25369966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:163-476
               
               
               Cow position:chr4:52226166-52225851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:164-284
               
               
               Cow position:chr4:5637565-5637446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:164-451
               
               
               Cow position:chr4:5913184-5913482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):55, 133

               
               
               Conread position:164-465
               
               
               Cow position:chr4:20327543-20327856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:164-465
               
               
               Cow position:chr4:21072993-21073299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:164-465
               
               
               Cow position:chr4:37881093-37880786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:164-466
               
               
               Cow position:chr4:2610382-2610088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 71

               
               
               Conread position:164-466
               
               
               Cow position:chr4:23167059-23166757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:164-466
               
               
               Cow position:chr4:23646690-23646990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:164-466
               
               
               Cow position:chr4:23758963-23758657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:164-467
               
               
               Cow position:chr4:12697791-12697496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:164-471
               
               
               Cow position:chr4:34369285-34369605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:164-471
               
               
               Cow position:chr4:40822950-40823267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:164-471
               
               
               Cow position:chr4:41603003-41602697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:164-471
               
               
               Cow position:chr4:61897372-61897688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:164-473
               
               
               Cow position:chr4:16238989-16239302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 133

               
               
               Conread position:164-475
               
               
               Cow position:chr4:961485-961825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 189

               
               
               Conread position:164-475
               
               
               Cow position:chr4:6208617-6208305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:164-475
               
               
               Cow position:chr4:28377513-28377811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:164-475
               
               
               Cow position:chr4:60897113-60897434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):57, 149

               
               
               Conread position:165-416
               
               
               Cow position:chr4:60031064-60030809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:165-466
               
               
               Cow position:chr4:22115766-22115459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:165-475
               
               
               Cow position:chr4:31172833-31172513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 139

               
               
               Conread position:165-475
               
               
               Cow position:chr4:49794829-49794513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:166-434
               
               
               Cow position:chr4:21063629-21063902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:166-466
               
               
               Cow position:chr4:22860549-22860859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 168

               
               
               Conread position:167-441
               
               
               Cow position:chr4:5580717-5580436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 185

               
               
               Conread position:167-451
               
               
               Cow position:chr4:20066063-20066354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:170-466
               
               
               Cow position:chr4:243387-243081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 182

               
               
               Conread position:170-471
               
               
               Cow position:chr4:34310313-34310603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:171-440
               
               
               Cow position:chr4:22546695-22546959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:171-466
               
               
               Cow position:chr4:11021506-11021802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:172-466
               
               
               Cow position:chr4:36929468-36929170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:183-466
               
               
               Cow position:chr4:29805240-29805517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:183-471
               
               
               Cow position:chr4:16594212-16593931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:187-471
               
               
               Cow position:chr4:25888686-25888982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:190-466
               
               
               Cow position:chr4:22741297-22741559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:192-408
               
               
               Cow position:chr4:19292844-19292631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:192-441
               
               
               Cow position:chr4:12473982-12473727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 154

               
               
               Conread position:192-441
               
               
               Cow position:chr4:13284515-13284261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 155

               
               
               Conread position:192-442
               
               
               Cow position:chr4:53126237-53125994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:192-452
               
               
               Cow position:chr4:14945185-14944925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:198-414
               
               
               Cow position:chr4:46476829-46477048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:198-475
               
               
               Cow position:chr4:12903937-12903660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:209-477
               
               
               Cow position:chr4:14470466-14470729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:213-411
               
               
               Cow position:chr4:19102779-19102977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-411
               
               
               Cow position:chr4:44772940-44773138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:213-418
               
               
               Cow position:chr4:32693891-32693685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-419
               
               
               Cow position:chr4:46136852-46136651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:213-423
               
               
               Cow position:chr4:19098575-19098361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-428
               
               
               Cow position:chr4:45595929-45596140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:213-431
               
               
               Cow position:chr4:12901455-12901667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:213-435
               
               
               Cow position:chr4:11380382-11380167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:213-441
               
               
               Cow position:chr4:19584806-19584594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):211, 77

               
               
               Conread position:213-443
               
               
               Cow position:chr4:13222084-13222307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 125

               
               
               Conread position:213-443
               
               
               Cow position:chr4:45583020-45583244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:213-444
               
               
               Cow position:chr4:13668519-13668750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-444
               
               
               Cow position:chr4:44838792-44839015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-446
               
               
               Cow position:chr4:47280230-47280010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-447
               
               
               Cow position:chr4:38946318-38946079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:213-448
               
               
               Cow position:chr4:48173239-48173008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-456
               
               
               Cow position:chr4:69543285-69543047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:213-461
               
               
               Cow position:chr4:3837378-3837141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-461
               
               
               Cow position:chr4:16762623-16762869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-464
               
               
               Cow position:chr4:21015-20773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-464
               
               
               Cow position:chr4:4084347-4084593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-464
               
               
               Cow position:chr4:37313268-37313025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-464
               
               
               Cow position:chr4:41300895-41301136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:213-465
               
               
               Cow position:chr4:17186248-17186499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 95

               
               
               Conread position:213-465
               
               
               Cow position:chr4:19407895-19408146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:213-465
               
               
               Cow position:chr4:59785425-59785171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-465
               
               
               Cow position:chr4:65650031-65650271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):108, 90

               
               
               Conread position:213-466
               
               
               Cow position:chr4:508806-509052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:213-466
               
               
               Cow position:chr4:26401058-26400813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr4:36893462-36893210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr4:39128640-39128386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr4:40414524-40414775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 125

               
               
               Conread position:213-466
               
               
               Cow position:chr4:45738372-45738625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr4:46591770-46591517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 89

               
               
               Conread position:213-466
               
               
               Cow position:chr4:46597471-46597228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr4:49629583-49629336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-467
               
               
               Cow position:chr4:6653824-6653581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-467
               
               
               Cow position:chr4:21874905-21874668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:213-467
               
               
               Cow position:chr4:36577524-36577778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-470
               
               
               Cow position:chr4:18095571-18095825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr4:2602333-2602079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:213-471
               
               
               Cow position:chr4:5460759-5461014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr4:10379214-10378956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:213-471
               
               
               Cow position:chr4:10732326-10732070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr4:10999612-10999856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr4:11099553-11099821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:213-471
               
               
               Cow position:chr4:12676900-12676652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr4:13941559-13941307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr4:19321975-19322235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr4:20147286-20147034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr4:23444944-23445205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr4:23509696-23509440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr4:25879493-25879243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-471
               
               
               Cow position:chr4:30792071-30791816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr4:32726327-32726074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr4:37915233-37915490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):107, 132

               
               
               Conread position:213-471
               
               
               Cow position:chr4:38944155-38944413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:213-471
               
               
               Cow position:chr4:43515819-43515574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):211, 70

               
               
               Conread position:213-471
               
               
               Cow position:chr4:43865754-43866010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr4:44782477-44782221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr4:58248504-58248252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr4:66547665-66547919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-473
               
               
               Cow position:chr4:45775235-45775501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:213-473
               
               
               Cow position:chr4:61313110-61313362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:213-474
               
               
               Cow position:chr4:41370836-41371100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:213-475
               
               
               Cow position:chr4:656706-656974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:213-475
               
               
               Cow position:chr4:9925526-9925788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-475
               
               
               Cow position:chr4:12591111-12591370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr4:22101162-22101418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr4:27276441-27276702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-475
               
               
               Cow position:chr4:32458757-32459023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:213-475
               
               
               Cow position:chr4:41185817-41186062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:213-475
               
               
               Cow position:chr4:51784282-51784020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-476
               
               
               Cow position:chr4:23846949-23847205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr4:7704222-7704479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr4:27530221-27529958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-477
               
               
               Cow position:chr4:59378012-59377756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-477
               
               
               Cow position:chr4:65950757-65950490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:214-455
               
               
               Cow position:chr4:65265204-65265449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:214-466
               
               
               Cow position:chr4:27755202-27755448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:214-471
               
               
               Cow position:chr4:10056306-10056056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:214-475
               
               
               Cow position:chr4:37935183-37935442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:215-335
               
               
               Cow position:chr4:51920645-51920522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:215-416
               
               
               Cow position:chr4:54920989-54921184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 81

               
               
               Conread position:215-444
               
               
               Cow position:chr4:45636267-45636038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:215-451
               
               
               Cow position:chr4:24481572-24481797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:215-455
               
               
               Cow position:chr4:32259742-32259981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-475
               
               
               Cow position:chr4:13256182-13255933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:216-466
               
               
               Cow position:chr4:23450994-23451245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 125

               
               
               Conread position:216-477
               
               
               Cow position:chr4:56239760-56240008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):91, 121

               
               
               Conread position:218-415
               
               
               Cow position:chr4:17084240-17084437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:218-440
               
               
               Cow position:chr4:19430463-19430239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:218-451
               
               
               Cow position:chr4:65815611-65815831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-465
               
               
               Cow position:chr4:33433158-33433410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 91

               
               
               Conread position:218-471
               
               
               Cow position:chr4:13973873-13974121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr4:52748358-52748610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 65

               
               
               Conread position:218-472
               
               
               Cow position:chr4:58880864-58881116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-474
               
               
               Cow position:chr4:34630995-34630739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:219-454
               
               
               Cow position:chr4:25537643-25537409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:219-465
               
               
               Cow position:chr4:54191185-54190942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr4:15905198-15904951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:219-466
               
               
               Cow position:chr4:54524249-54524477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr4:68764622-68764368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:219-471
               
               
               Cow position:chr4:19500996-19501236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr4:51769199-51768960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:219-475
               
               
               Cow position:chr4:45076981-45077230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:220-466
               
               
               Cow position:chr4:13693577-13693821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:221-389
               
               
               Cow position:chr4:26830800-26830632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-435
               
               
               Cow position:chr4:13026406-13026184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:221-441
               
               
               Cow position:chr4:45013073-45013287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:221-443
               
               
               Cow position:chr4:45074153-45073939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr4:45367844-45367611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:221-444
               
               
               Cow position:chr4:34699940-34700164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:221-453
               
               
               Cow position:chr4:38952647-38952417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:221-454
               
               
               Cow position:chr4:11897201-11897435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:221-461
               
               
               Cow position:chr4:8947490-8947251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:221-464
               
               
               Cow position:chr4:5999101-5999334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:221-464
               
               
               Cow position:chr4:51899100-51898862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:4672239-4672478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:221-466
               
               
               Cow position:chr4:20027010-20027248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:36731284-36731047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:47348920-47348680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:51728173-51727929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:55395855-55395613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr4:65919702-65919466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-467
               
               
               Cow position:chr4:4827222-4826977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr4:4320897-4321154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr4:22073230-22073468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:221-471
               
               
               Cow position:chr4:31505930-31506184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr4:37691218-37691465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr4:45662408-45662660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:221-474
               
               
               Cow position:chr4:22344928-22345175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:221-475
               
               
               Cow position:chr4:3283353-3283605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr4:25197401-25197655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr4:37343227-37342956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 210

               
               
               Conread position:221-477
               
               
               Cow position:chr4:24001873-24002125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:222-466
               
               
               Cow position:chr4:19315914-19316148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:222-471
               
               
               Cow position:chr4:43740627-43740369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:223-444
               
               
               Cow position:chr4:10905367-10905591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:223-466
               
               
               Cow position:chr4:22713391-22713638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:228-464
               
               
               Cow position:chr4:18756522-18756288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 108

               
               
               Conread position:228-466
               
               
               Cow position:chr4:45644230-45644455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:228-466
               
               
               Cow position:chr4:54455255-54455490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:228-469
               
               
               Cow position:chr4:3850639-3850406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:228-471
               
               
               Cow position:chr4:12127551-12127794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr4:30974421-30974188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:228-471
               
               
               Cow position:chr4:45711451-45711217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:228-477
               
               
               Cow position:chr4:33395610-33395853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:229-464
               
               
               Cow position:chr4:52779938-52779706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:229-466
               
               
               Cow position:chr4:62771833-62772072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:229-471
               
               
               Cow position:chr4:44613092-44612850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:229-471
               
               
               Cow position:chr4:59871562-59871333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:229-477
               
               
               Cow position:chr4:38999510-38999263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):175, 98

               
               
               Conread position:230-399
               
               
               Cow position:chr4:19493642-19493472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:230-409
               
               
               Cow position:chr4:64657214-64657386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:230-466
               
               
               Cow position:chr4:44973724-44973489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:230-466
               
               
               Cow position:chr4:45250056-45249829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:230-466
               
               
               Cow position:chr4:54171712-54171475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:235-471
               
               
               Cow position:chr4:21232793-21233026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:236-466
               
               
               Cow position:chr4:46061022-46060798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:237-449
               
               
               Cow position:chr4:18107081-18107291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:237-471
               
               
               Cow position:chr4:3388622-3388392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:237-471
               
               
               Cow position:chr4:66256766-66256529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:238-398
               
               
               Cow position:chr4:33181622-33181455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:238-419
               
               
               Cow position:chr4:11610948-11610776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 71

               
               
               Conread position:238-433
               
               
               Cow position:chr4:37675691-37675500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:238-454
               
               
               Cow position:chr4:16799108-16799324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-465
               
               
               Cow position:chr4:33030627-33030406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-466
               
               
               Cow position:chr4:19582540-19582764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:238-466
               
               
               Cow position:chr4:34383264-34383494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:238-466
               
               
               Cow position:chr4:52823324-52823552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 178

               
               
               Conread position:238-466
               
               
               Cow position:chr4:65432228-65432003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:238-471
               
               
               Cow position:chr4:17474517-17474284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:238-471
               
               
               Cow position:chr4:53346405-53346174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:238-471
               
               
               Cow position:chr4:59008277-59008522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 169

               
               
               Conread position:238-475
               
               
               Cow position:chr4:27632521-27632292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:238-475
               
               
               Cow position:chr4:48143916-48143668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:239-443
               
               
               Cow position:chr4:34210110-34209906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 79

               
               
               Conread position:239-443
               
               
               Cow position:chr4:46183490-46183285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:239-454
               
               
               Cow position:chr4:17052516-17052738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:239-460
               
               
               Cow position:chr4:13326878-13327095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 70

               
               
               Conread position:239-465
               
               
               Cow position:chr4:28836614-28836384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:239-466
               
               
               Cow position:chr4:45685534-45685321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-471
               
               
               Cow position:chr4:61148691-61148441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:240-477
               
               
               Cow position:chr4:24744330-24744568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:243-465
               
               
               Cow position:chr4:54927367-54927586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:243-471
               
               
               Cow position:chr4:38935432-38935204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:244-477
               
               
               Cow position:chr4:11332169-11331933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:245-471
               
               
               Cow position:chr4:26307418-26307649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 141

               
               
               Conread position:246-477
               
               
               Cow position:chr4:23526764-23526536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:247-466
               
               
               Cow position:chr4:26323809-26323589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:247-471
               
               
               Cow position:chr4:33612290-33612511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:247-471
               
               
               Cow position:chr4:51739648-51739861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:247-475
               
               
               Cow position:chr4:47730927-47730697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:247-477
               
               
               Cow position:chr4:31004340-31004568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:248-415
               
               
               Cow position:chr4:45563810-45563646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:248-454
               
               
               Cow position:chr4:27665081-27664873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:248-460
               
               
               Cow position:chr4:14542610-14542820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:248-460
               
               
               Cow position:chr4:42673244-42673034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:248-460
               
               
               Cow position:chr4:58423732-58423956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 220

               
               
               Conread position:248-464
               
               
               Cow position:chr4:2894099-2893879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-467
               
               
               Cow position:chr4:46393505-46393287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-476
               
               
               Cow position:chr4:40918364-40918129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 186

               
               
               Conread position:250-414
               
               
               Cow position:chr4:51730016-51729857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:250-443
               
               
               Cow position:chr4:14920055-14919870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):170, 58

               
               
               Conread position:250-454
               
               
               Cow position:chr4:2885474-2885681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-454
               
               
               Cow position:chr4:29106973-29106767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:250-454
               
               
               Cow position:chr4:49089843-49089653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):174, 54

               
               
               Conread position:250-459
               
               
               Cow position:chr4:25806965-25806762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr4:19008112-19007905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr4:43148477-43148266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 124

               
               
               Conread position:250-465
               
               
               Cow position:chr4:17111808-17112023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:250-466
               
               
               Cow position:chr4:63096008-63096220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:250-475
               
               
               Cow position:chr4:46456003-46456217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:250-477
               
               
               Cow position:chr4:44676259-44676033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:250-477
               
               
               Cow position:chr4:54930356-54930585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:251-465
               
               
               Cow position:chr4:15439641-15439432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:254-465
               
               
               Cow position:chr4:28399351-28399564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:254-471
               
               
               Cow position:chr4:21391750-21391965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:254-475
               
               
               Cow position:chr4:44451578-44451369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:255-454
               
               
               Cow position:chr4:39231460-39231652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:257-465
               
               
               Cow position:chr4:15635389-15635594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:259-441
               
               
               Cow position:chr4:65175088-65175261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:259-449
               
               
               Cow position:chr4:57584185-57584376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-453
               
               
               Cow position:chr4:13043320-13043130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-454
               
               
               Cow position:chr4:19265630-19265440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:259-459
               
               
               Cow position:chr4:44258277-44258490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:259-460
               
               
               Cow position:chr4:4843187-4843388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:259-471
               
               
               Cow position:chr4:51867049-51866847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 50

               
               
               Conread position:262-454
               
               
               Cow position:chr4:58261096-58261286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:263-466
               
               
               Cow position:chr4:15623903-15623696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:264-454
               
               
               Cow position:chr4:52307570-52307748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):156, 43

               
               
               Conread position:264-466
               
               
               Cow position:chr4:26549534-26549312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 212

               
               
               Conread position:264-475
               
               
               Cow position:chr4:38705721-38705931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:266-466
               
               
               Cow position:chr4:41154694-41154497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:269-466
               
               
               Cow position:chr4:22236437-22236628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 37

               
               
               Conread position:274-465
               
               
               Cow position:chr4:21516961-21517151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:275-466
               
               
               Cow position:chr4:35939966-35940155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:276-471
               
               
               Cow position:chr4:37619848-37620040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:280-471
               
               
               Cow position:chr4:63119203-63119394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:282-477
               
               
               Cow position:chr4:19463530-19463336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:284-471
               
               
               Cow position:chr4:11201852-11201664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:284-471
               
               
               Cow position:chr4:11671484-11671303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:300-466
               
               
               Cow position:chr4:47047909-47047746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:301-471
               
               
               Cow position:chr4:65538402-65538570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:308-465
               
               
               Cow position:chr4:38181689-38181536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:309-471
               
               
               Cow position:chr4:36725047-36724886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:310-451
               
               
               Cow position:chr4:53546032-53545893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:310-465
               
               
               Cow position:chr4:11901558-11901709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr4:34924687-34924841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:310-473
               
               
               Cow position:chr4:69386090-69385938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-475
               
               
               Cow position:chr4:48137915-48137752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:314-475
               
               
               Cow position:chr4:3475629-3475470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):144, 17

               
               
               Conread position:315-467
               
               
               Cow position:chr4:65891990-65891841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:315-471
               
               
               Cow position:chr4:27687925-27687771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:315-471
               
               
               Cow position:chr4:46370823-46370662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:315-475
               
               
               Cow position:chr4:53999512-53999668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:316-475
               
               
               Cow position:chr4:1237117-1237275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:317-475
               
               
               Cow position:chr4:39009968-39009808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:319-471
               
               
               Cow position:chr4:53833040-53832896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:319-477
               
               
               Cow position:chr4:52166857-52167013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:337-475
               
               
               Cow position:chr4:43909724-43909582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:339-471
               
               
               Cow position:chr4:24118930-24119061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:347-471
               
               
               Cow position:chr4:54667716-54667842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:348-454
               
               
               Cow position:chr4:26011822-26011716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:348-471
               
               
               Cow position:chr4:23911612-23911738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:354-471
               
               
               Cow position:chr4:19561648-19561532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:357-465
               
               
               Cow position:chr4:67392921-67392812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:357-471
               
               
               Cow position:chr4:54501487-54501601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:361-471
               
               
               Cow position:chr4:43369893-43370006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:373-475
               
               
               Cow position:chr4:42266806-42266908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:144-466
               
               
               Cow position:chr5:28945845-28946184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:144-470
               
               
               Cow position:chr5:58320255-58320584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:146-465
               
               
               Cow position:chr5:15426736-15426416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:148-464
               
               
               Cow position:chr5:39442509-39442185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:151-465
               
               
               Cow position:chr5:47680805-47681115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:154-477
               
               
               Cow position:chr5:1949852-1950190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 299

               
               
               Conread position:155-393
               
               
               Cow position:chr5:45396208-45396452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):65, 161

               
               
               Conread position:155-443
               
               
               Cow position:chr5:50575993-50575693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):72, 198

               
               
               Conread position:155-443
               
               
               Cow position:chr5:75436687-75436979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:155-462
               
               
               Cow position:chr5:740753-741050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:155-464
               
               
               Cow position:chr5:17028301-17027985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 199

               
               
               Conread position:155-465
               
               
               Cow position:chr5:41604828-41604502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 150

               
               
               Conread position:155-471
               
               
               Cow position:chr5:14314740-14314406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 210

               
               
               Conread position:155-471
               
               
               Cow position:chr5:29903319-29903641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:155-471
               
               
               Cow position:chr5:52000409-52000103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:155-477
               
               
               Cow position:chr5:35145559-35145224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 189

               
               
               Conread position:156-397
               
               
               Cow position:chr5:56153822-56153569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:158-461
               
               
               Cow position:chr5:25919434-25919732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:162-416
               
               
               Cow position:chr5:1461270-1461023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):147, 55

               
               
               Conread position:162-464
               
               
               Cow position:chr5:23366571-23366878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:162-471
               
               
               Cow position:chr5:56680449-56680128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:163-315
               
               
               Cow position:chr5:2288052-2288210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:163-368
               
               
               Cow position:chr5:23527433-23527652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-413
               
               
               Cow position:chr5:34625164-34624896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 196

               
               
               Conread position:163-414
               
               
               Cow position:chr5:41946043-41945786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:163-421
               
               
               Cow position:chr5:328006-328258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):141, 51

               
               
               Conread position:163-423
               
               
               Cow position:chr5:38738979-38738728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 56

               
               
               Conread position:163-454
               
               
               Cow position:chr5:29895387-29895095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:163-466
               
               
               Cow position:chr5:3669075-3668787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):113, 56

               
               
               Conread position:163-466
               
               
               Cow position:chr5:4219040-4218761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):158, 17

               
               
               Conread position:163-466
               
               
               Cow position:chr5:18899172-18898865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:163-466
               
               
               Cow position:chr5:27419532-27419836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:163-466
               
               
               Cow position:chr5:28927407-28927703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:163-466
               
               
               Cow position:chr5:29844477-29844165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-471
               
               
               Cow position:chr5:16179307-16179644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 280

               
               
               Conread position:163-475
               
               
               Cow position:chr5:27102597-27102917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:163-475
               
               
               Cow position:chr5:35763460-35763150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:163-475
               
               
               Cow position:chr5:56467886-56467572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:163-475
               
               
               Cow position:chr5:72006666-72006977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:164-409
               
               
               Cow position:chr5:29515309-29515553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:164-431
               
               
               Cow position:chr5:24175566-24175291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:164-455
               
               
               Cow position:chr5:35784791-35785080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 138

               
               
               Conread position:164-461
               
               
               Cow position:chr5:37069077-37068786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 62

               
               
               Conread position:164-466
               
               
               Cow position:chr5:26262470-26262786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:164-466
               
               
               Cow position:chr5:41452476-41452778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:164-471
               
               
               Cow position:chr5:65932765-65933049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):260, 43

               
               
               Conread position:164-475
               
               
               Cow position:chr5:19294304-19294614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:164-475
               
               
               Cow position:chr5:23529087-23529401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 154

               
               
               Conread position:164-475
               
               
               Cow position:chr5:40039574-40039895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:164-475
               
               
               Cow position:chr5:40927799-40928103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:165-415
               
               
               Cow position:chr5:28035938-28035678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:165-418
               
               
               Cow position:chr5:17267699-17267960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:165-423
               
               
               Cow position:chr5:38717509-38717251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 142

               
               
               Conread position:165-434
               
               
               Cow position:chr5:37757651-37757909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:165-465
               
               
               Cow position:chr5:48758135-48757833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:165-466
               
               
               Cow position:chr5:34441586-34441905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:165-466
               
               
               Cow position:chr5:46610903-46611210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:165-471
               
               
               Cow position:chr5:6528878-6528563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:165-471
               
               
               Cow position:chr5:7723858-7723551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:165-471
               
               
               Cow position:chr5:39875319-39875004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 183

               
               
               Conread position:165-471
               
               
               Cow position:chr5:72952038-72951720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 154

               
               
               Conread position:165-475
               
               
               Cow position:chr5:40387687-40387999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:166-466
               
               
               Cow position:chr5:8024002-8024309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:166-471
               
               
               Cow position:chr5:62639098-62638788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 167

               
               
               Conread position:166-475
               
               
               Cow position:chr5:25899682-25899998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:167-475
               
               
               Cow position:chr5:7552228-7552547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 180

               
               
               Conread position:168-466
               
               
               Cow position:chr5:63963981-63964283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:169-471
               
               
               Cow position:chr5:26377470-26377786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):62, 199

               
               
               Conread position:170-476
               
               
               Cow position:chr5:57074148-57074460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:170-477
               
               
               Cow position:chr5:71454422-71454725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):47, 173

               
               
               Conread position:173-461
               
               
               Cow position:chr5:26594912-26595212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 46

               
               
               Conread position:181-464
               
               
               Cow position:chr5:54090216-54089930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:182-475
               
               
               Cow position:chr5:34463414-34463713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:183-443
               
               
               Cow position:chr5:4617542-4617277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:187-436
               
               
               Cow position:chr5:42782551-42782802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:187-459
               
               
               Cow position:chr5:18554065-18553791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:187-475
               
               
               Cow position:chr5:27411228-27411520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:190-474
               
               
               Cow position:chr5:60747118-60747403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:190-477
               
               
               Cow position:chr5:72564938-72564635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:191-460
               
               
               Cow position:chr5:6890854-6891127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:192-440
               
               
               Cow position:chr5:57526761-57527007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:192-466
               
               
               Cow position:chr5:30303047-30302779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:193-419
               
               
               Cow position:chr5:57755868-57756098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:200-471
               
               
               Cow position:chr5:21829015-21828747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:200-471
               
               
               Cow position:chr5:45804208-45803944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:202-465
               
               
               Cow position:chr5:36486642-36486378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:204-471
               
               
               Cow position:chr5:19813074-19813334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:205-471
               
               
               Cow position:chr5:14629661-14629932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:206-475
               
               
               Cow position:chr5:15598096-15598358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:208-465
               
               
               Cow position:chr5:13717430-13717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:208-466
               
               
               Cow position:chr5:62142817-62142556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:210-475
               
               
               Cow position:chr5:7057263-7057529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:212-443
               
               
               Cow position:chr5:51935326-51935100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 60

               
               
               Conread position:212-466
               
               
               Cow position:chr5:58856239-58855989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 71

               
               
               Conread position:212-471
               
               
               Cow position:chr5:44752170-44752430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-475
               
               
               Cow position:chr5:32975413-32975676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:213-375
               
               
               Cow position:chr5:57230202-57230363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-390
               
               
               Cow position:chr5:49501688-49501863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-419
               
               
               Cow position:chr5:11769405-11769201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-419
               
               
               Cow position:chr5:67212496-67212289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-430
               
               
               Cow position:chr5:19752438-19752226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:213-441
               
               
               Cow position:chr5:30805300-30805077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-441
               
               
               Cow position:chr5:47323598-47323375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-443
               
               
               Cow position:chr5:54086674-54086451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:213-443
               
               
               Cow position:chr5:63234693-63234921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):211, 95

               
               
               Conread position:213-448
               
               
               Cow position:chr5:42064341-42064106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr5:59872944-59873187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 232

               
               
               Conread position:213-450
               
               
               Cow position:chr5:55019428-55019194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr5:39258641-39258418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-454
               
               
               Cow position:chr5:54375366-54375610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr5:57767851-57768086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-457
               
               
               Cow position:chr5:12557151-12557398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-460
               
               
               Cow position:chr5:12434679-12434427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:213-461
               
               
               Cow position:chr5:23678567-23678813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:213-461
               
               
               Cow position:chr5:43929600-43929845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 133

               
               
               Conread position:213-461
               
               
               Cow position:chr5:60183941-60183692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:213-464
               
               
               Cow position:chr5:39447396-39447642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr5:4710016-4710258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-465
               
               
               Cow position:chr5:16206019-16206268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:213-465
               
               
               Cow position:chr5:26990524-26990279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):155, 36

               
               
               Conread position:213-465
               
               
               Cow position:chr5:30276826-30276584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-465
               
               
               Cow position:chr5:47696314-47696555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 90

               
               
               Conread position:213-466
               
               
               Cow position:chr5:2309422-2309674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr5:3639361-3639606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr5:4221114-4220870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 130

               
               
               Conread position:213-466
               
               
               Cow position:chr5:12902053-12901801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:213-466
               
               
               Cow position:chr5:14473267-14473531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:213-466
               
               
               Cow position:chr5:17999360-17999609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):211, 90

               
               
               Conread position:213-466
               
               
               Cow position:chr5:23168690-23168939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr5:29828182-29827935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:213-466
               
               
               Cow position:chr5:46322667-46322924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 94

               
               
               Conread position:213-466
               
               
               Cow position:chr5:50723182-50722934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-466
               
               
               Cow position:chr5:55956048-55955795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr5:66582099-66581849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:213-466
               
               
               Cow position:chr5:71494957-71494703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-467
               
               
               Cow position:chr5:52668173-52667912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:213-468
               
               
               Cow position:chr5:458624-458377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-469
               
               
               Cow position:chr5:43992460-43992204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr5:4031850-4032113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr5:6045432-6045172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 137

               
               
               Conread position:213-471
               
               
               Cow position:chr5:18289258-18289010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr5:20779262-20779505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr5:22643096-22643337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr5:26476882-26477131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-471
               
               
               Cow position:chr5:28224588-28224333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:213-471
               
               
               Cow position:chr5:28230300-28230038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 166

               
               
               Conread position:213-471
               
               
               Cow position:chr5:35208397-35208147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr5:40109628-40109380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:213-471
               
               
               Cow position:chr5:43858284-43858551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):97, 67

               
               
               Conread position:213-471
               
               
               Cow position:chr5:44726198-44726445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr5:45273366-45273620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr5:54311472-54311213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-471
               
               
               Cow position:chr5:54350225-54350487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr5:54767773-54768029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:213-471
               
               
               Cow position:chr5:55068842-55068591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-471
               
               
               Cow position:chr5:57419658-57419912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr5:63987310-63987570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:213-471
               
               
               Cow position:chr5:66972565-66972308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-472
               
               
               Cow position:chr5:35969668-35969422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-472
               
               
               Cow position:chr5:38833257-38833003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 145

               
               
               Conread position:213-473
               
               
               Cow position:chr5:4280584-4280340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:213-475
               
               
               Cow position:chr5:3771982-3771718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-475
               
               
               Cow position:chr5:9893987-9894255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:213-475
               
               
               Cow position:chr5:37646217-37645949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr5:37646408-37646674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr5:37808527-37808799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr5:41165224-41164965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr5:41713435-41713179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:213-475
               
               
               Cow position:chr5:49920060-49919801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:214-387
               
               
               Cow position:chr5:57101389-57101561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:214-443
               
               
               Cow position:chr5:49685142-49685362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:214-452
               
               
               Cow position:chr5:41294216-41293979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:214-454
               
               
               Cow position:chr5:44796598-44796835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:214-471
               
               
               Cow position:chr5:52165044-52165298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:214-475
               
               
               Cow position:chr5:60715233-60715483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:214-477
               
               
               Cow position:chr5:64758633-64758897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:215-466
               
               
               Cow position:chr5:29352993-29353242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:215-471
               
               
               Cow position:chr5:29771662-29771399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 202

               
               
               Conread position:215-471
               
               
               Cow position:chr5:51053515-51053767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):81, 126

               
               
               Conread position:216-399
               
               
               Cow position:chr5:58555270-58555093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:216-475
               
               
               Cow position:chr5:21039850-21040098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):207, 52

               
               
               Conread position:218-466
               
               
               Cow position:chr5:65588830-65588589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):103, 85

               
               
               Conread position:218-471
               
               
               Cow position:chr5:30845241-30844994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 78

               
               
               Conread position:218-471
               
               
               Cow position:chr5:46509735-46509985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:219-460
               
               
               Cow position:chr5:38076354-38076591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:219-465
               
               
               Cow position:chr5:27306433-27306207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr5:53842423-53842170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr5:31923502-31923253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr5:34562146-34561893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr5:53835845-53835595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:220-477
               
               
               Cow position:chr5:11668057-11668311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:221-403
               
               
               Cow position:chr5:22446039-22445863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:221-450
               
               
               Cow position:chr5:3549664-3549885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:221-464
               
               
               Cow position:chr5:12322680-12322913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr5:58446934-58446691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr5:50533261-50533500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr5:7044578-7044821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr5:53710562-53710808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr5:56524301-56524061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr5:5257161-5257411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:20128179-20127937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr5:24996096-24996342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:30949788-30950035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:35826729-35826484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:40356720-40356986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-471
               
               
               Cow position:chr5:44847894-44848145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr5:50821910-50821663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:53855833-53855575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr5:55177013-55176771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:57934981-57935228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr5:58144480-58144723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:221-471
               
               
               Cow position:chr5:65776257-65776501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:221-476
               
               
               Cow position:chr5:49474417-49474671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:221-477
               
               
               Cow position:chr5:9089890-9090146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:222-372
               
               
               Cow position:chr5:45574238-45574385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:222-465
               
               
               Cow position:chr5:34301043-34300803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:222-471
               
               
               Cow position:chr5:56070986-56070737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:223-464
               
               
               Cow position:chr5:65941124-65941362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:225-475
               
               
               Cow position:chr5:58793483-58793739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:228-464
               
               
               Cow position:chr5:32338844-32339076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:228-464
               
               
               Cow position:chr5:64176005-64176229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:228-466
               
               
               Cow position:chr5:36855327-36855090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:228-466
               
               
               Cow position:chr5:41609405-41609185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:228-466
               
               
               Cow position:chr5:42744901-42744674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:228-466
               
               
               Cow position:chr5:54060397-54060162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:228-466
               
               
               Cow position:chr5:57737220-57736996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:228-471
               
               
               Cow position:chr5:21617579-21617339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr5:44993928-44994157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):139, 61

               
               
               Conread position:229-466
               
               
               Cow position:chr5:16893651-16893886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:229-471
               
               
               Cow position:chr5:47313589-47313354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:230-453
               
               
               Cow position:chr5:64523744-64523969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:230-466
               
               
               Cow position:chr5:14550465-14550696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:230-466
               
               
               Cow position:chr5:32672948-32673176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:230-466
               
               
               Cow position:chr5:50637940-50637712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:230-475
               
               
               Cow position:chr5:17062962-17063219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:230-477
               
               
               Cow position:chr5:24349226-24348981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:230-477
               
               
               Cow position:chr5:32696704-32696946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:231-466
               
               
               Cow position:chr5:66257754-66257525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:236-466
               
               
               Cow position:chr5:21920494-21920257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:237-443
               
               
               Cow position:chr5:59384578-59384782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:237-465
               
               
               Cow position:chr5:52644968-52645192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:237-465
               
               
               Cow position:chr5:57561635-57561404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:237-473
               
               
               Cow position:chr5:31481260-31481025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:237-475
               
               
               Cow position:chr5:63426893-63427134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:237-477
               
               
               Cow position:chr5:47316862-47317096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:237-477
               
               
               Cow position:chr5:63647367-63647603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:238-374
               
               
               Cow position:chr5:62415850-62415986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-428
               
               
               Cow position:chr5:45420026-45420209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-433
               
               
               Cow position:chr5:43403016-43402818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 135

               
               
               Conread position:238-443
               
               
               Cow position:chr5:1087088-1087288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:238-448
               
               
               Cow position:chr5:23357440-23357238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:238-454
               
               
               Cow position:chr5:65883661-65883879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-459
               
               
               Cow position:chr5:21535000-21535221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:238-465
               
               
               Cow position:chr5:35246999-35247223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:238-466
               
               
               Cow position:chr5:45225706-45225939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:238-466
               
               
               Cow position:chr5:55966769-55966993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr5:11427121-11427357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):6, 105

               
               
               Conread position:238-471
               
               
               Cow position:chr5:55929055-55928823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr5:57575884-57575650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:238-471
               
               
               Cow position:chr5:65752971-65752737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr5:74643567-74643790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 70

               
               
               Conread position:238-474
               
               
               Cow position:chr5:45574731-45574494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:238-475
               
               
               Cow position:chr5:6896016-6896251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:238-475
               
               
               Cow position:chr5:67932361-67932589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):186, 67

               
               
               Conread position:239-443
               
               
               Cow position:chr5:29097478-29097275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:239-451
               
               
               Cow position:chr5:35126165-35125953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:239-459
               
               
               Cow position:chr5:65886900-65887118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:239-471
               
               
               Cow position:chr5:6503771-6503999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:239-475
               
               
               Cow position:chr5:16214797-16214559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:240-471
               
               
               Cow position:chr5:43737854-43738072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:241-466
               
               
               Cow position:chr5:57327909-57327682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:241-475
               
               
               Cow position:chr5:5110966-5111201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:247-443
               
               
               Cow position:chr5:15479228-15479034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:247-464
               
               
               Cow position:chr5:34528651-34528450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:247-466
               
               
               Cow position:chr5:18574274-18574056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:247-466
               
               
               Cow position:chr5:35459191-35459408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:247-471
               
               
               Cow position:chr5:30253843-30253622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-475
               
               
               Cow position:chr5:34168064-34167832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:247-477
               
               
               Cow position:chr5:54112014-54111796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:247-477
               
               
               Cow position:chr5:59115484-59115254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):175, 55

               
               
               Conread position:248-443
               
               
               Cow position:chr5:64137357-64137162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:249-454
               
               
               Cow position:chr5:45409423-45409220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:249-477
               
               
               Cow position:chr5:34887095-34887325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:250-443
               
               
               Cow position:chr5:61840287-61840100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:250-459
               
               
               Cow position:chr5:47704027-47704237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:250-464
               
               
               Cow position:chr5:19523999-19523785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:250-471
               
               
               Cow position:chr5:19335682-19335906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:250-474
               
               
               Cow position:chr5:5855957-5855742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:251-466
               
               
               Cow position:chr5:16509204-16508981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:252-465
               
               
               Cow position:chr5:32140612-32140821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:252-466
               
               
               Cow position:chr5:67540104-67540317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:252-471
               
               
               Cow position:chr5:28926083-28926303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:252-477
               
               
               Cow position:chr5:69520988-69520767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:253-471
               
               
               Cow position:chr5:56820168-56820381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:254-459
               
               
               Cow position:chr5:56635990-56635793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:254-475
               
               
               Cow position:chr5:42845498-42845729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:254-475
               
               
               Cow position:chr5:73080300-73080079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:255-475
               
               
               Cow position:chr5:65593962-65593749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:257-457
               
               
               Cow position:chr5:40295933-40296133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:258-474
               
               
               Cow position:chr5:4927474-4927689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:259-466
               
               
               Cow position:chr5:46122263-46122464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:259-477
               
               
               Cow position:chr5:29213028-29212819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:260-466
               
               
               Cow position:chr5:35209386-35209589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:260-471
               
               
               Cow position:chr5:31144698-31144906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:264-465
               
               
               Cow position:chr5:33414326-33414525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:264-472
               
               
               Cow position:chr5:64168154-64168362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:265-471
               
               
               Cow position:chr5:55756334-55756550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:266-464
               
               
               Cow position:chr5:34192990-34192784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:266-471
               
               
               Cow position:chr5:34638967-34638765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:271-471
               
               
               Cow position:chr5:27155095-27154904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:276-465
               
               
               Cow position:chr5:45940536-45940725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:277-471
               
               
               Cow position:chr5:32956023-32956215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:280-466
               
               
               Cow position:chr5:30487311-30487122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:280-471
               
               
               Cow position:chr5:21964358-21964166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:281-465
               
               
               Cow position:chr5:6670125-6670307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:281-466
               
               
               Cow position:chr5:12709953-12709771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:282-466
               
               
               Cow position:chr5:2500112-2500302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:282-466
               
               
               Cow position:chr5:64823244-64823425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:283-466
               
               
               Cow position:chr5:29979916-29980097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:290-466
               
               
               Cow position:chr5:54404831-54405007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:290-477
               
               
               Cow position:chr5:43474903-43474721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:293-466
               
               
               Cow position:chr5:65924634-65924810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:297-467
               
               
               Cow position:chr5:51800922-51801088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:297-471
               
               
               Cow position:chr5:35235659-35235828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:297-477
               
               
               Cow position:chr5:18090790-18090597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 171

               
               
               Conread position:298-471
               
               
               Cow position:chr5:56433857-56433685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:300-464
               
               
               Cow position:chr5:60448265-60448101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:300-471
               
               
               Cow position:chr5:34115700-34115531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:300-473
               
               
               Cow position:chr5:24485387-24485557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:306-454
               
               
               Cow position:chr5:56469780-56469929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:308-466
               
               
               Cow position:chr5:37713854-37714012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:308-471
               
               
               Cow position:chr5:7140066-7140230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:309-471
               
               
               Cow position:chr5:8994526-8994685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:310-466
               
               
               Cow position:chr5:17644618-17644770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr5:71579212-71579055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:311-477
               
               
               Cow position:chr5:47721581-47721412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:315-471
               
               
               Cow position:chr5:56334718-56334559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:315-477
               
               
               Cow position:chr5:19079160-19078988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:332-471
               
               
               Cow position:chr5:16185105-16184968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:337-461
               
               
               Cow position:chr5:50950567-50950445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:337-466
               
               
               Cow position:chr5:28324371-28324240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:348-471
               
               
               Cow position:chr5:7921395-7921519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:349-475
               
               
               Cow position:chr5:44849726-44849851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:358-466
               
               
               Cow position:chr5:45037015-45036907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:361-475
               
               
               Cow position:chr5:3492186-3492071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:364-461
               
               
               Cow position:chr5:57271277-57271377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:364-467
               
               
               Cow position:chr5:60520150-60520047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:129-440
               
               
               Cow position:chr6:54490482-54490810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:131-471
               
               
               Cow position:chr6:17090846-17090494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:138-466
               
               
               Cow position:chr6:56376114-56376452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:142-466
               
               
               Cow position:chr6:35415303-35415620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:142-471
               
               
               Cow position:chr6:48806782-48807101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:144-453
               
               
               Cow position:chr6:6673305-6673014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:147-464
               
               
               Cow position:chr6:45064789-45065112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:150-466
               
               
               Cow position:chr6:36652643-36652319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:152-461
               
               
               Cow position:chr6:1907742-1907449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:155-310
               
               
               Cow position:chr6:13054006-13053849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:155-372
               
               
               Cow position:chr6:68046928-68047158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:155-466
               
               
               Cow position:chr6:7824965-7824664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):154, 83

               
               
               Conread position:155-466
               
               
               Cow position:chr6:56843356-56843056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):146, 64

               
               
               Conread position:155-470
               
               
               Cow position:chr6:65872105-65871797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:155-471
               
               
               Cow position:chr6:35774764-35775091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:155-471
               
               
               Cow position:chr6:47575128-47574800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:155-471
               
               
               Cow position:chr6:48572664-48572984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:155-475
               
               
               Cow position:chr6:14696151-14696482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:155-475
               
               
               Cow position:chr6:15997002-15997323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:155-475
               
               
               Cow position:chr6:28318594-28318293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:157-475
               
               
               Cow position:chr6:15782298-15782635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 314

               
               
               Conread position:157-475
               
               
               Cow position:chr6:65264315-65264650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 178

               
               
               Conread position:158-447
               
               
               Cow position:chr6:54478935-54479229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):70, 186

               
               
               Conread position:158-475
               
               
               Cow position:chr6:6994743-6995064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):70, 187

               
               
               Conread position:159-466
               
               
               Cow position:chr6:24004753-24004443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:162-453
               
               
               Cow position:chr6:10487787-10487499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:162-475
               
               
               Cow position:chr6:27815268-27815583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:163-316
               
               
               Cow position:chr6:47772752-47772917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:163-320
               
               
               Cow position:chr6:48345790-48345629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:163-391
               
               
               Cow position:chr6:34235203-34235439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:163-395
               
               
               Cow position:chr6:41655826-41656073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-402
               
               
               Cow position:chr6:2899355-2899607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-409
               
               
               Cow position:chr6:36454385-36454634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:163-417
               
               
               Cow position:chr6:24558088-24557831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 83

               
               
               Conread position:163-422
               
               
               Cow position:chr6:34549605-34549343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:163-428
               
               
               Cow position:chr6:44623817-44623546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:163-454
               
               
               Cow position:chr6:65873239-65872954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:163-455
               
               
               Cow position:chr6:55892964-55892680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:163-461
               
               
               Cow position:chr6:24222948-24223255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:163-466
               
               
               Cow position:chr6:24545824-24545514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-466
               
               
               Cow position:chr6:28477378-28477078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:163-471
               
               
               Cow position:chr6:33917628-33917952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:163-471
               
               
               Cow position:chr6:36645603-36645283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 162

               
               
               Conread position:163-471
               
               
               Cow position:chr6:54368717-54369005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:163-472
               
               
               Cow position:chr6:37463234-37462913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 186

               
               
               Conread position:163-474
               
               
               Cow position:chr6:31564123-31564446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:163-475
               
               
               Cow position:chr6:29210706-29210390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:163-475
               
               
               Cow position:chr6:37634998-37634675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:163-475
               
               
               Cow position:chr6:45596317-45596652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-475
               
               
               Cow position:chr6:47616411-47616723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:163-475
               
               
               Cow position:chr6:53674071-53673749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:163-475
               
               
               Cow position:chr6:63196952-63197282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-476
               
               
               Cow position:chr6:20196097-20196404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:164-303
               
               
               Cow position:chr6:54203844-54203997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:164-331
               
               
               Cow position:chr6:43651952-43651781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:164-461
               
               
               Cow position:chr6:55475465-55475151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 182

               
               
               Conread position:164-464
               
               
               Cow position:chr6:16626155-16625849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:164-465
               
               
               Cow position:chr6:12652408-12652107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:164-466
               
               
               Cow position:chr6:38218869-38218572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:164-471
               
               
               Cow position:chr6:3545887-3545590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:164-471
               
               
               Cow position:chr6:34195934-34196255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:164-471
               
               
               Cow position:chr6:57164617-57164321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:164-474
               
               
               Cow position:chr6:8787845-8788146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:164-475
               
               
               Cow position:chr6:4864345-4864657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:165-452
               
               
               Cow position:chr6:47026686-47026394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):60, 181

               
               
               Conread position:165-462
               
               
               Cow position:chr6:63047803-63047481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 316

               
               
               Conread position:165-466
               
               
               Cow position:chr6:61644629-61644936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:165-469
               
               
               Cow position:chr6:28810797-28811095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 53

               
               
               Conread position:165-469
               
               
               Cow position:chr6:60118369-60118045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 190

               
               
               Conread position:166-411
               
               
               Cow position:chr6:47305946-47306183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 133

               
               
               Conread position:167-442
               
               
               Cow position:chr6:33929348-33929626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:167-471
               
               
               Cow position:chr6:26450524-26450216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:169-415
               
               
               Cow position:chr6:51294490-51294234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 176

               
               
               Conread position:169-471
               
               
               Cow position:chr6:899098-899395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:170-455
               
               
               Cow position:chr6:143181-143458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:171-465
               
               
               Cow position:chr6:24583029-24583329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:172-471
               
               
               Cow position:chr6:9008406-9008716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:175-475
               
               
               Cow position:chr6:21736685-21736998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:175-477
               
               
               Cow position:chr6:21061699-21062004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:176-477
               
               
               Cow position:chr6:120431-120131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:183-410
               
               
               Cow position:chr6:47958991-47958768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:183-413
               
               
               Cow position:chr6:2585123-2584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:183-465
               
               
               Cow position:chr6:61137555-61137276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:187-465
               
               
               Cow position:chr6:7173567-7173852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:187-466
               
               
               Cow position:chr6:19427637-19427353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:187-466
               
               
               Cow position:chr6:58074224-58073948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:189-471
               
               
               Cow position:chr6:48803459-48803742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:189-477
               
               
               Cow position:chr6:59588224-59588521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:200-471
               
               
               Cow position:chr6:26728368-26728630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:206-473
               
               
               Cow position:chr6:33206893-33206640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:208-475
               
               
               Cow position:chr6:16707167-16706892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:211-465
               
               
               Cow position:chr6:38610121-38609869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 125

               
               
               Conread position:212-434
               
               
               Cow position:chr6:61142410-61142633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:212-471
               
               
               Cow position:chr6:36470411-36470673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-475
               
               
               Cow position:chr6:21111102-21110856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:212-476
               
               
               Cow position:chr6:38771431-38771176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:213-375
               
               
               Cow position:chr6:60451577-60451412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-394
               
               
               Cow position:chr6:46331069-46330891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:213-411
               
               
               Cow position:chr6:2078665-2078865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-415
               
               
               Cow position:chr6:16352204-16352396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 109

               
               
               Conread position:213-433
               
               
               Cow position:chr6:22215320-22215536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:213-433
               
               
               Cow position:chr6:57546079-57546288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:213-438
               
               
               Cow position:chr6:17068498-17068722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-441
               
               
               Cow position:chr6:37395250-37395483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-442
               
               
               Cow position:chr6:22985703-22985935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-442
               
               
               Cow position:chr6:24339431-24339207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:213-443
               
               
               Cow position:chr6:5330561-5330337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:213-443
               
               
               Cow position:chr6:10176152-10176374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-443
               
               
               Cow position:chr6:21514458-21514691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-444
               
               
               Cow position:chr6:2623923-2623703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:213-444
               
               
               Cow position:chr6:51835546-51835319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-447
               
               
               Cow position:chr6:35103178-35103416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:213-448
               
               
               Cow position:chr6:19695956-19695725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-448
               
               
               Cow position:chr6:38441322-38441092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):211, 121

               
               
               Conread position:213-452
               
               
               Cow position:chr6:23401843-23402076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-454
               
               
               Cow position:chr6:35993733-35993492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:213-454
               
               
               Cow position:chr6:61269464-61269221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:213-458
               
               
               Cow position:chr6:6067551-6067785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:213-459
               
               
               Cow position:chr6:28976890-28977128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-459
               
               
               Cow position:chr6:35726246-35726002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:213-461
               
               
               Cow position:chr6:42565837-42565593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-461
               
               
               Cow position:chr6:44867393-44867636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:213-462
               
               
               Cow position:chr6:15447048-15447299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-462
               
               
               Cow position:chr6:53519474-53519720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-464
               
               
               Cow position:chr6:4691826-4692078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-465
               
               
               Cow position:chr6:5113904-5114144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-465
               
               
               Cow position:chr6:6343580-6343327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:213-465
               
               
               Cow position:chr6:10039873-10039622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr6:13367435-13367194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr6:15242986-15242737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:213-465
               
               
               Cow position:chr6:40032340-40032094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr6:53841356-53841598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:213-465
               
               
               Cow position:chr6:57571629-57571378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr6:528134-528373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr6:3592547-3592301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr6:5095392-5095654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-466
               
               
               Cow position:chr6:14914086-14914345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr6:19446400-19446159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr6:25407242-25407492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr6:47799443-47799191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr6:67214899-67214644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):96, 157

               
               
               Conread position:213-470
               
               
               Cow position:chr6:13565236-13564979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:213-470
               
               
               Cow position:chr6:21004826-21004564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:582123-582376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr6:3952668-3952414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:8637431-8637170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:213-471
               
               
               Cow position:chr6:8966247-8965988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 148

               
               
               Conread position:213-471
               
               
               Cow position:chr6:9219416-9219168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr6:10105829-10106097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:213-471
               
               
               Cow position:chr6:11169852-11169600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:213-471
               
               
               Cow position:chr6:11246916-11246658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr6:17313883-17313629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:18048871-18049135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr6:24468246-24468498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr6:24781411-24781664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr6:35842807-35842545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:36189847-36189592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:40774182-40774457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 260

               
               
               Conread position:213-471
               
               
               Cow position:chr6:43134789-43135049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr6:44194400-44194647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:213-471
               
               
               Cow position:chr6:53932698-53932952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:213-471
               
               
               Cow position:chr6:54573409-54573138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 256

               
               
               Conread position:213-471
               
               
               Cow position:chr6:54864510-54864776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr6:54867667-54867408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-471
               
               
               Cow position:chr6:60740164-60739910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr6:64432088-64431834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr6:66131454-66131198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr6:67951099-67950848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-472
               
               
               Cow position:chr6:15937705-15937956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-473
               
               
               Cow position:chr6:21590857-21590581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-474
               
               
               Cow position:chr6:47339206-47339465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr6:16764496-16764762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr6:35181107-35181367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-475
               
               
               Cow position:chr6:37149339-37149079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-477
               
               
               Cow position:chr6:44078664-44078405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:213-477
               
               
               Cow position:chr6:62437564-62437299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:213-477
               
               
               Cow position:chr6:65259342-65259586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:214-447
               
               
               Cow position:chr6:67282043-67281812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:214-453
               
               
               Cow position:chr6:6401099-6400863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:214-465
               
               
               Cow position:chr6:7189971-7190218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:214-465
               
               
               Cow position:chr6:12338148-12337885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):45, 139

               
               
               Conread position:214-473
               
               
               Cow position:chr6:6060423-6060671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:214-473
               
               
               Cow position:chr6:40713350-40713608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:214-475
               
               
               Cow position:chr6:5302271-5302522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 71

               
               
               Conread position:215-448
               
               
               Cow position:chr6:35436142-35435912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-466
               
               
               Cow position:chr6:59069472-59069724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:217-466
               
               
               Cow position:chr6:6098120-6098384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 254

               
               
               Conread position:218-464
               
               
               Cow position:chr6:10225511-10225737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):206, 85

               
               
               Conread position:218-466
               
               
               Cow position:chr6:56850163-56849912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:218-477
               
               
               Cow position:chr6:60667566-60667305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:219-416
               
               
               Cow position:chr6:68652208-68652403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-419
               
               
               Cow position:chr6:17527446-17527641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:219-436
               
               
               Cow position:chr6:23353690-23353482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:219-447
               
               
               Cow position:chr6:12091850-12092075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:219-449
               
               
               Cow position:chr6:63298888-63299116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-465
               
               
               Cow position:chr6:17794621-17794855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-469
               
               
               Cow position:chr6:19264356-19264599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:219-473
               
               
               Cow position:chr6:46465964-46465716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:220-451
               
               
               Cow position:chr6:51969217-51968981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:220-471
               
               
               Cow position:chr6:31535426-31535672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:221-422
               
               
               Cow position:chr6:60468379-60468181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:221-436
               
               
               Cow position:chr6:36284381-36284171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-443
               
               
               Cow position:chr6:16700403-16700187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:221-454
               
               
               Cow position:chr6:60350151-60350384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:221-459
               
               
               Cow position:chr6:19292943-19292705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:221-461
               
               
               Cow position:chr6:7119478-7119705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr6:26915469-26915235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-461
               
               
               Cow position:chr6:66375192-66375425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr6:4559159-4559404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:221-465
               
               
               Cow position:chr6:5609306-5609539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr6:46865451-46865692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr6:10399763-10400001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:221-466
               
               
               Cow position:chr6:16191823-16191569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:221-466
               
               
               Cow position:chr6:58370902-58370653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:221-466
               
               
               Cow position:chr6:67456859-67456613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-467
               
               
               Cow position:chr6:19013215-19012964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:221-467
               
               
               Cow position:chr6:27888492-27888248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:221-469
               
               
               Cow position:chr6:52478270-52478518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr6:11192330-11192571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:221-471
               
               
               Cow position:chr6:12551411-12551165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:221-471
               
               
               Cow position:chr6:28483157-28482914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr6:30974188-30973947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:221-471
               
               
               Cow position:chr6:59603067-59603312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr6:61515041-61515301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:221-473
               
               
               Cow position:chr6:66531681-66531928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-474
               
               
               Cow position:chr6:59718937-59718688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr6:16316457-16316196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:221-475
               
               
               Cow position:chr6:26909732-26909980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):203, 10

               
               
               Conread position:221-475
               
               
               Cow position:chr6:32122048-32121797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:221-475
               
               
               Cow position:chr6:48112337-48112088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr6:49002598-49002843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 74

               
               
               Conread position:221-477
               
               
               Cow position:chr6:31526187-31525936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:222-456
               
               
               Cow position:chr6:66874490-66874259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:222-465
               
               
               Cow position:chr6:65871177-65870929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:222-466
               
               
               Cow position:chr6:1703946-1703718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:222-466
               
               
               Cow position:chr6:52901377-52901134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:222-471
               
               
               Cow position:chr6:9026658-9026412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 7

               
               
               Conread position:222-471
               
               
               Cow position:chr6:26043879-26043647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):134, 61

               
               
               Conread position:226-477
               
               
               Cow position:chr6:53401492-53401252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:228-443
               
               
               Cow position:chr6:12845510-12845307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:228-465
               
               
               Cow position:chr6:14958205-14958444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:228-466
               
               
               Cow position:chr6:38614947-38614719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:228-466
               
               
               Cow position:chr6:38641627-38641394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:228-467
               
               
               Cow position:chr6:242936-242707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):196, 60

               
               
               Conread position:228-475
               
               
               Cow position:chr6:54990866-54991114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:228-477
               
               
               Cow position:chr6:21231659-21231420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:229-465
               
               
               Cow position:chr6:17548840-17549080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 231

               
               
               Conread position:229-471
               
               
               Cow position:chr6:60057521-60057761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 104

               
               
               Conread position:229-475
               
               
               Cow position:chr6:27110731-27110479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:230-462
               
               
               Cow position:chr6:33509919-33509693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:230-466
               
               
               Cow position:chr6:4383612-4383386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:230-466
               
               
               Cow position:chr6:34475428-34475652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:230-471
               
               
               Cow position:chr6:60442540-60442313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:230-475
               
               
               Cow position:chr6:20206408-20206162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:231-465
               
               
               Cow position:chr6:45388456-45388231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:237-465
               
               
               Cow position:chr6:55763979-55763754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:237-466
               
               
               Cow position:chr6:41733758-41733525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:237-471
               
               
               Cow position:chr6:50984348-50984120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:237-471
               
               
               Cow position:chr6:60819638-60819410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:237-471
               
               
               Cow position:chr6:61631482-61631714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:237-477
               
               
               Cow position:chr6:54647378-54647638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:238-392
               
               
               Cow position:chr6:51086193-51086044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:238-443
               
               
               Cow position:chr6:4468893-4468690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:238-443
               
               
               Cow position:chr6:16103072-16103271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 63

               
               
               Conread position:238-443
               
               
               Cow position:chr6:16287936-16288130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:238-443
               
               
               Cow position:chr6:46558182-46557976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 120

               
               
               Conread position:238-466
               
               
               Cow position:chr6:1429765-1429539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-466
               
               
               Cow position:chr6:28083897-28084111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 50

               
               
               Conread position:238-466
               
               
               Cow position:chr6:28156038-28156248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):187, 45

               
               
               Conread position:238-466
               
               
               Cow position:chr6:36196335-36196114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):186, 77

               
               
               Conread position:238-467
               
               
               Cow position:chr6:39093876-39093635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 228

               
               
               Conread position:238-475
               
               
               Cow position:chr6:51675034-51674800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 101

               
               
               Conread position:238-477
               
               
               Cow position:chr6:377250-377019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:238-477
               
               
               Cow position:chr6:12542805-12543045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-477
               
               
               Cow position:chr6:63720325-63720083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:239-442
               
               
               Cow position:chr6:41375893-41375693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:239-471
               
               
               Cow position:chr6:38207366-38207596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:241-467
               
               
               Cow position:chr6:7128281-7128503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:242-471
               
               
               Cow position:chr6:19996735-19996513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:243-454
               
               
               Cow position:chr6:60673685-60673480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:243-471
               
               
               Cow position:chr6:2547375-2547141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:245-465
               
               
               Cow position:chr6:20097841-20098063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 64

               
               
               Conread position:247-465
               
               
               Cow position:chr6:54365212-54365430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:247-471
               
               
               Cow position:chr6:2607722-2607511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 56

               
               
               Conread position:247-472
               
               
               Cow position:chr6:46282888-46283106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:248-464
               
               
               Cow position:chr6:54036028-54036233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:249-460
               
               
               Cow position:chr6:60783984-60783774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:250-447
               
               
               Cow position:chr6:54600461-54600264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:250-460
               
               
               Cow position:chr6:54208022-54208233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:250-460
               
               
               Cow position:chr6:55209670-55209462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:250-471
               
               
               Cow position:chr6:16746456-16746235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:250-471
               
               
               Cow position:chr6:52412972-52412753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:250-473
               
               
               Cow position:chr6:1371113-1371339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:250-477
               
               
               Cow position:chr6:61608625-61608399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:252-474
               
               
               Cow position:chr6:25008830-25008601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:253-465
               
               
               Cow position:chr6:59297110-59296900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:254-471
               
               
               Cow position:chr6:3929427-3929213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:256-471
               
               
               Cow position:chr6:59109051-59108836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:259-443
               
               
               Cow position:chr6:20157437-20157253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:259-475
               
               
               Cow position:chr6:1499747-1499528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:259-477
               
               
               Cow position:chr6:60850276-60850502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:263-466
               
               
               Cow position:chr6:32287739-32287538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:263-466
               
               
               Cow position:chr6:67968510-67968710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:264-448
               
               
               Cow position:chr6:28148355-28148169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:264-465
               
               
               Cow position:chr6:46292249-46292443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:265-471
               
               
               Cow position:chr6:1770100-1770300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:266-447
               
               
               Cow position:chr6:54364895-54365085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:266-475
               
               
               Cow position:chr6:62924899-62925107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:267-399
               
               
               Cow position:chr6:8094193-8094324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:268-471
               
               
               Cow position:chr6:31635593-31635794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:270-471
               
               
               Cow position:chr6:57405032-57405234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:271-471
               
               
               Cow position:chr6:8804439-8804635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:272-443
               
               
               Cow position:chr6:58732220-58732384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):152, 18

               
               
               Conread position:280-465
               
               
               Cow position:chr6:14850631-14850815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 52

               
               
               Conread position:280-466
               
               
               Cow position:chr6:44099169-44098984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:280-471
               
               
               Cow position:chr6:44984416-44984224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:284-471
               
               
               Cow position:chr6:416187-415993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 87

               
               
               Conread position:302-473
               
               
               Cow position:chr6:60456889-60456723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:308-471
               
               
               Cow position:chr6:19351104-19351259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:308-471
               
               
               Cow position:chr6:53731578-53731416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:310-439
               
               
               Cow position:chr6:30688565-30688686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:310-471
               
               
               Cow position:chr6:40834418-40834574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:310-471
               
               
               Cow position:chr6:62479110-62479270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:310-477
               
               
               Cow position:chr6:20230776-20230942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:313-471
               
               
               Cow position:chr6:24515151-24515298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):112, 23

               
               
               Conread position:313-477
               
               
               Cow position:chr6:16411238-16411079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:315-471
               
               
               Cow position:chr6:18968735-18968884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:315-477
               
               
               Cow position:chr6:38234004-38233844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:316-466
               
               
               Cow position:chr6:1510635-1510488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:319-471
               
               
               Cow position:chr6:48344374-48344227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:340-471
               
               
               Cow position:chr6:56848890-56849022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:358-471
               
               
               Cow position:chr6:45160286-45160399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:362-475
               
               
               Cow position:chr6:32986994-32987108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:127-466
               
               
               Cow position:chr7:26665322-26665652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:141-465
               
               
               Cow position:chr7:19399447-19399773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:144-442
               
               
               Cow position:chr7:36248343-36248025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 184

               
               
               Conread position:144-475
               
               
               Cow position:chr7:44049146-44049477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:146-305
               
               
               Cow position:chr7:65118833-65118988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:153-422
               
               
               Cow position:chr7:18947518-18947799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:154-434
               
               
               Cow position:chr7:6058346-6058058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 190

               
               
               Conread position:154-454
               
               
               Cow position:chr7:4512598-4512901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 89

               
               
               Conread position:155-461
               
               
               Cow position:chr7:62610512-62610218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:155-477
               
               
               Cow position:chr7:40567295-40566962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):67, 204

               
               
               Conread position:155-477
               
               
               Cow position:chr7:48359236-48358892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 204

               
               
               Conread position:157-477
               
               
               Cow position:chr7:45747638-45747955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:158-475
               
               
               Cow position:chr7:18858555-18858233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 31

               
               
               Conread position:162-460
               
               
               Cow position:chr7:20537587-20537271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 192

               
               
               Conread position:162-465
               
               
               Cow position:chr7:20080861-20081159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:162-466
               
               
               Cow position:chr7:12754942-12755242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 143

               
               
               Conread position:162-471
               
               
               Cow position:chr7:600547-600233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 147

               
               
               Conread position:162-472
               
               
               Cow position:chr7:1732990-1733302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:163-461
               
               
               Cow position:chr7:47172498-47172798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:163-464
               
               
               Cow position:chr7:20621-20310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 183

               
               
               Conread position:163-464
               
               
               Cow position:chr7:24667597-24667298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:163-464
               
               
               Cow position:chr7:64003674-64003373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 146

               
               
               Conread position:163-465
               
               
               Cow position:chr7:23131807-23131504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:163-465
               
               
               Cow position:chr7:52784594-52784896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:163-467
               
               
               Cow position:chr7:19466027-19466352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 195

               
               
               Conread position:163-467
               
               
               Cow position:chr7:31170728-31171050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 201

               
               
               Conread position:163-470
               
               
               Cow position:chr7:43234232-43234542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:163-471
               
               
               Cow position:chr7:11011478-11011791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:163-471
               
               
               Cow position:chr7:14536057-14536386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:163-471
               
               
               Cow position:chr7:48243869-48243571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 55

               
               
               Conread position:163-471
               
               
               Cow position:chr7:53613344-53613043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 71

               
               
               Conread position:163-471
               
               
               Cow position:chr7:58170955-58170638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 192

               
               
               Conread position:163-475
               
               
               Cow position:chr7:1262241-1261912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:163-475
               
               
               Cow position:chr7:19981637-19981957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:163-475
               
               
               Cow position:chr7:20918132-20918456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 208

               
               
               Conread position:163-475
               
               
               Cow position:chr7:23251353-23251669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 143

               
               
               Conread position:163-475
               
               
               Cow position:chr7:26631603-26631923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:163-475
               
               
               Cow position:chr7:34214804-34214487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:163-475
               
               
               Cow position:chr7:37362083-37361776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:163-475
               
               
               Cow position:chr7:68932529-68932199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:164-409
               
               
               Cow position:chr7:22981546-22981295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:164-416
               
               
               Cow position:chr7:38429487-38429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 202

               
               
               Conread position:164-443
               
               
               Cow position:chr7:2896966-2896689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:164-453
               
               
               Cow position:chr7:68088836-68088542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:164-465
               
               
               Cow position:chr7:48547671-48547959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:164-466
               
               
               Cow position:chr7:7106570-7106883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:164-466
               
               
               Cow position:chr7:67839554-67839243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:164-471
               
               
               Cow position:chr7:2897374-2897058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:164-471
               
               
               Cow position:chr7:57537308-57537623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:164-471
               
               
               Cow position:chr7:69066909-69066595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:164-475
               
               
               Cow position:chr7:27387765-27388090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:164-477
               
               
               Cow position:chr7:44589661-44589961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:165-370
               
               
               Cow position:chr7:24869438-24869649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 183

               
               
               Conread position:165-447
               
               
               Cow position:chr7:52536041-52536336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 184

               
               
               Conread position:165-449
               
               
               Cow position:chr7:52550995-52550730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:165-465
               
               
               Cow position:chr7:66266376-66266681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:165-471
               
               
               Cow position:chr7:15608597-15608311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):142, 54

               
               
               Conread position:165-471
               
               
               Cow position:chr7:25014921-25015221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:165-471
               
               
               Cow position:chr7:25023259-25023559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:165-475
               
               
               Cow position:chr7:255618-255920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:165-475
               
               
               Cow position:chr7:59076060-59075739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:165-475
               
               
               Cow position:chr7:67820322-67820009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:166-465
               
               
               Cow position:chr7:12424756-12424448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 185

               
               
               Conread position:166-465
               
               
               Cow position:chr7:40303062-40303364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:166-466
               
               
               Cow position:chr7:45956134-45955832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:166-467
               
               
               Cow position:chr7:50075524-50075824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:166-475
               
               
               Cow position:chr7:36830861-36830550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 183

               
               
               Conread position:167-444
               
               
               Cow position:chr7:2289788-2290058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:167-466
               
               
               Cow position:chr7:68516483-68516777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 177

               
               
               Conread position:169-441
               
               
               Cow position:chr7:40894748-40894466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:170-471
               
               
               Cow position:chr7:25445601-25445293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 174

               
               
               Conread position:172-471
               
               
               Cow position:chr7:32079637-32079351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:173-466
               
               
               Cow position:chr7:30155755-30156052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:175-471
               
               
               Cow position:chr7:25393492-25393185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:175-471
               
               
               Cow position:chr7:49417795-49417501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:182-444
               
               
               Cow position:chr7:56081783-56081526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:182-475
               
               
               Cow position:chr7:40074868-40074569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:183-471
               
               
               Cow position:chr7:8375454-8375170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:188-461
               
               
               Cow position:chr7:60761540-60761269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:188-471
               
               
               Cow position:chr7:20176534-20176808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):246, 7

               
               
               Conread position:189-424
               
               
               Cow position:chr7:21545181-21545421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:190-477
               
               
               Cow position:chr7:45593217-45592928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:191-466
               
               
               Cow position:chr7:34412092-34412372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:192-411
               
               
               Cow position:chr7:41104379-41104608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:198-443
               
               
               Cow position:chr7:27472628-27472884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):101, 153

               
               
               Conread position:198-473
               
               
               Cow position:chr7:57659996-57660272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:198-475
               
               
               Cow position:chr7:27603371-27603671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:200-466
               
               
               Cow position:chr7:25867336-25867605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:200-467
               
               
               Cow position:chr7:31315472-31315214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:206-471
               
               
               Cow position:chr7:23679426-23679694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:207-413
               
               
               Cow position:chr7:39129450-39129650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:208-464
               
               
               Cow position:chr7:32710828-32711072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:209-465
               
               
               Cow position:chr7:40189705-40189458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:210-426
               
               
               Cow position:chr7:33914126-33913912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:210-443
               
               
               Cow position:chr7:54513251-54513485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:210-471
               
               
               Cow position:chr7:39147957-39147694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:212-460
               
               
               Cow position:chr7:14519888-14520135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 125

               
               
               Conread position:212-475
               
               
               Cow position:chr7:42295929-42296185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:213-394
               
               
               Cow position:chr7:50166181-50166001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:213-404
               
               
               Cow position:chr7:29505267-29505077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-413
               
               
               Cow position:chr7:11549815-11549620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-414
               
               
               Cow position:chr7:38361086-38361277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-419
               
               
               Cow position:chr7:37466665-37466458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-432
               
               
               Cow position:chr7:54054738-54054523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:213-441
               
               
               Cow position:chr7:24461103-24460885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-441
               
               
               Cow position:chr7:30017366-30017590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):211, 139

               
               
               Conread position:213-443
               
               
               Cow position:chr7:1761883-1761650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-443
               
               
               Cow position:chr7:25722514-25722737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-443
               
               
               Cow position:chr7:39823448-39823672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:213-444
               
               
               Cow position:chr7:40308367-40308592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-446
               
               
               Cow position:chr7:39093774-39094004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:213-447
               
               
               Cow position:chr7:53606181-53606401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):207, 76

               
               
               Conread position:213-447
               
               
               Cow position:chr7:68857436-68857665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-448
               
               
               Cow position:chr7:13963365-13963123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-451
               
               
               Cow position:chr7:41745314-41745558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 37

               
               
               Conread position:213-454
               
               
               Cow position:chr7:14450477-14450254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):211, 73

               
               
               Conread position:213-454
               
               
               Cow position:chr7:25860054-25860283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr7:56347673-56347910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-454
               
               
               Cow position:chr7:59843598-59843841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-455
               
               
               Cow position:chr7:36774520-36774279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 127

               
               
               Conread position:213-459
               
               
               Cow position:chr7:25511972-25512214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:213-461
               
               
               Cow position:chr7:40008981-40008725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:213-464
               
               
               Cow position:chr7:4129628-4129877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-464
               
               
               Cow position:chr7:38696994-38696752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):226, 15

               
               
               Conread position:213-465
               
               
               Cow position:chr7:15755294-15755546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-465
               
               
               Cow position:chr7:36570015-36569753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 180

               
               
               Conread position:213-465
               
               
               Cow position:chr7:37952330-37952086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr7:40067812-40067562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chr7:48721752-48721999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:213-466
               
               
               Cow position:chr7:2579085-2579340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr7:3026567-3026821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-466
               
               
               Cow position:chr7:3256193-3256451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 248

               
               
               Conread position:213-466
               
               
               Cow position:chr7:5853500-5853261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr7:9193085-9193342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-466
               
               
               Cow position:chr7:9800507-9800256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):46, 125

               
               
               Conread position:213-466
               
               
               Cow position:chr7:23568584-23568834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:213-466
               
               
               Cow position:chr7:23646763-23646509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:213-466
               
               
               Cow position:chr7:24220820-24220572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-466
               
               
               Cow position:chr7:25263520-25263273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 107

               
               
               Conread position:213-466
               
               
               Cow position:chr7:25415546-25415301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 122

               
               
               Conread position:213-466
               
               
               Cow position:chr7:33386074-33385829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr7:37697957-37697704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr7:41293594-41293846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr7:48406341-48406594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr7:49903924-49903678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:213-466
               
               
               Cow position:chr7:53579239-53579491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:213-466
               
               
               Cow position:chr7:61731740-61731987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr7:62793949-62793688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:213-466
               
               
               Cow position:chr7:64572905-64573161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-466
               
               
               Cow position:chr7:65315377-65315119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-467
               
               
               Cow position:chr7:46856811-46857058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr7:9136990-9136731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr7:12408089-12408338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:213-471
               
               
               Cow position:chr7:18188077-18188324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:213-471
               
               
               Cow position:chr7:23636855-23636605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:213-471
               
               
               Cow position:chr7:27283826-27283580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr7:28544328-28544073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr7:28917243-28916984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr7:34422120-34422371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr7:38060274-38060532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr7:40710280-40710009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr7:42894601-42894343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:213-471
               
               
               Cow position:chr7:44596550-44596802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):211, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr7:46051808-46051552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:213-471
               
               
               Cow position:chr7:46823822-46823566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr7:47547560-47547303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr7:48020580-48020318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):100, 246

               
               
               Conread position:213-471
               
               
               Cow position:chr7:49648509-49648262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr7:51019930-51019680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-471
               
               
               Cow position:chr7:52718487-52718737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:213-471
               
               
               Cow position:chr7:53763441-53763687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr7:58923550-58923293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr7:61552072-61551805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):91, 214

               
               
               Conread position:213-472
               
               
               Cow position:chr7:41464618-41464369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):211, 15

               
               
               Conread position:213-473
               
               
               Cow position:chr7:18388247-18388506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-473
               
               
               Cow position:chr7:30931825-30932080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:213-473
               
               
               Cow position:chr7:35286488-35286745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-473
               
               
               Cow position:chr7:58350814-58351067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:213-474
               
               
               Cow position:chr7:23936263-23936003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-475
               
               
               Cow position:chr7:9146794-9146531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):188, 25

               
               
               Conread position:213-475
               
               
               Cow position:chr7:11958287-11958542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:213-475
               
               
               Cow position:chr7:13593920-13593659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-475
               
               
               Cow position:chr7:17713319-17713584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 131

               
               
               Conread position:213-475
               
               
               Cow position:chr7:19230361-19230618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr7:64135315-64135572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr7:64949259-64949006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-476
               
               
               Cow position:chr7:26861473-26861204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:213-477
               
               
               Cow position:chr7:19797777-19798048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-477
               
               
               Cow position:chr7:32260043-32260309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:213-477
               
               
               Cow position:chr7:53053251-53053511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-477
               
               
               Cow position:chr7:63946434-63946691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-477
               
               
               Cow position:chr7:65122484-65122229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):109, 80

               
               
               Conread position:214-442
               
               
               Cow position:chr7:2816409-2816197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:214-460
               
               
               Cow position:chr7:2172901-2172661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:214-466
               
               
               Cow position:chr7:21122108-21122356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:214-471
               
               
               Cow position:chr7:39416061-39415806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:215-405
               
               
               Cow position:chr7:24927873-24928057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:215-454
               
               
               Cow position:chr7:44986803-44986564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:215-471
               
               
               Cow position:chr7:15559837-15559589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 130

               
               
               Conread position:215-471
               
               
               Cow position:chr7:51039581-51039320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:215-471
               
               
               Cow position:chr7:64364378-64364629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:215-475
               
               
               Cow position:chr7:46116489-46116759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:215-475
               
               
               Cow position:chr7:55693903-55694152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:216-465
               
               
               Cow position:chr7:1792300-1792558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:216-465
               
               
               Cow position:chr7:59688687-59688439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:216-471
               
               
               Cow position:chr7:11066628-11066372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 79

               
               
               Conread position:217-393
               
               
               Cow position:chr7:49630325-49630154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:218-443
               
               
               Cow position:chr7:33298299-33298519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:218-466
               
               
               Cow position:chr7:35893563-35893319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:218-466
               
               
               Cow position:chr7:49751271-49751029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:218-475
               
               
               Cow position:chr7:59168411-59168165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-477
               
               
               Cow position:chr7:38082303-38082046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:219-471
               
               
               Cow position:chr7:15855186-15855417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:219-471
               
               
               Cow position:chr7:51319954-51319697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:219-475
               
               
               Cow position:chr7:58490226-58489967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:220-461
               
               
               Cow position:chr7:41327890-41328133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:220-466
               
               
               Cow position:chr7:3336401-3336649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:220-471
               
               
               Cow position:chr7:63023296-63023037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:221-419
               
               
               Cow position:chr7:33720177-33719983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-431
               
               
               Cow position:chr7:4812163-4811959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:221-449
               
               
               Cow position:chr7:60870085-60869866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 67

               
               
               Conread position:221-451
               
               
               Cow position:chr7:10381954-10381718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 132

               
               
               Conread position:221-454
               
               
               Cow position:chr7:50065972-50066199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 100

               
               
               Conread position:221-454
               
               
               Cow position:chr7:50566058-50566286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr7:4452747-4452508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:221-464
               
               
               Cow position:chr7:60483285-60483522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr7:27990536-27990777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:221-466
               
               
               Cow position:chr7:32910691-32910447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:221-466
               
               
               Cow position:chr7:33698097-33697858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr7:36665475-36665234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:221-466
               
               
               Cow position:chr7:40952722-40952959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr7:47931653-47931899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr7:58862742-58862985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:221-471
               
               
               Cow position:chr7:5199407-5199653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:221-471
               
               
               Cow position:chr7:11714284-11714530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 31

               
               
               Conread position:221-471
               
               
               Cow position:chr7:25195685-25195436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr7:30816149-30816389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr7:31094205-31094451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr7:32894105-32894349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr7:39518437-39518196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:221-471
               
               
               Cow position:chr7:45158271-45158017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:221-471
               
               
               Cow position:chr7:47513542-47513790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr7:49106058-49106304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-475
               
               
               Cow position:chr7:12201768-12202035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:222-439
               
               
               Cow position:chr7:60153594-60153376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:222-465
               
               
               Cow position:chr7:27079770-27079530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:222-466
               
               
               Cow position:chr7:45927023-45927255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:222-471
               
               
               Cow position:chr7:50095528-50095281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:222-475
               
               
               Cow position:chr7:11869697-11869948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:223-451
               
               
               Cow position:chr7:52208894-52209134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:228-443
               
               
               Cow position:chr7:23456684-23456899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:228-464
               
               
               Cow position:chr7:11783287-11783528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:228-466
               
               
               Cow position:chr7:3283496-3283266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):92, 77

               
               
               Conread position:228-466
               
               
               Cow position:chr7:3311976-3311746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:228-466
               
               
               Cow position:chr7:28563253-28563480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr7:14524616-14524377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:228-471
               
               
               Cow position:chr7:15566889-15566655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:228-471
               
               
               Cow position:chr7:34670250-34670013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:228-475
               
               
               Cow position:chr7:32915252-32915001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:229-420
               
               
               Cow position:chr7:9108600-9108409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:229-471
               
               
               Cow position:chr7:22651694-22651929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:229-474
               
               
               Cow position:chr7:5212340-5212582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 107

               
               
               Conread position:229-477
               
               
               Cow position:chr7:61790216-61790466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:230-419
               
               
               Cow position:chr7:7535675-7535483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:230-443
               
               
               Cow position:chr7:1720835-1721041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:230-471
               
               
               Cow position:chr7:21650234-21650000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 77

               
               
               Conread position:230-471
               
               
               Cow position:chr7:34433146-34433382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:230-471
               
               
               Cow position:chr7:63749341-63749577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:230-474
               
               
               Cow position:chr7:37455453-37455212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:231-415
               
               
               Cow position:chr7:56886374-56886556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:231-443
               
               
               Cow position:chr7:48638710-48638499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:231-465
               
               
               Cow position:chr7:2884471-2884248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:231-471
               
               
               Cow position:chr7:35274947-35275183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:236-466
               
               
               Cow position:chr7:25960595-25960366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:237-454
               
               
               Cow position:chr7:47771695-47771484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):182, 57

               
               
               Conread position:238-401
               
               
               Cow position:chr7:49370978-49371139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:238-419
               
               
               Cow position:chr7:168539-168719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-443
               
               
               Cow position:chr7:60732511-60732715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:238-448
               
               
               Cow position:chr7:67873320-67873110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-451
               
               
               Cow position:chr7:8102548-8102338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:238-454
               
               
               Cow position:chr7:48204973-48205182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:238-465
               
               
               Cow position:chr7:10512586-10512806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:238-465
               
               
               Cow position:chr7:23177666-23177438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:238-466
               
               
               Cow position:chr7:8272789-8272562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:238-466
               
               
               Cow position:chr7:18965036-18964827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:238-466
               
               
               Cow position:chr7:19267243-19267467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):186, 69

               
               
               Conread position:238-466
               
               
               Cow position:chr7:26485698-26485483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-466
               
               
               Cow position:chr7:31881787-31881579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):186, 63

               
               
               Conread position:238-466
               
               
               Cow position:chr7:57258896-57259125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:238-467
               
               
               Cow position:chr7:147542-147313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:238-471
               
               
               Cow position:chr7:16022422-16022195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr7:66894412-66894643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:238-475
               
               
               Cow position:chr7:34554386-34554158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 50

               
               
               Conread position:238-475
               
               
               Cow position:chr7:68315363-68315135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:239-437
               
               
               Cow position:chr7:62398316-62398117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:239-440
               
               
               Cow position:chr7:63679198-63679005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:239-465
               
               
               Cow position:chr7:7506000-7506232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:239-471
               
               
               Cow position:chr7:38263799-38263567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:239-475
               
               
               Cow position:chr7:44454154-44454386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:240-458
               
               
               Cow position:chr7:69133075-69132861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:240-466
               
               
               Cow position:chr7:23256730-23256951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:241-473
               
               
               Cow position:chr7:22623976-22624211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:242-475
               
               
               Cow position:chr7:39930407-39930185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:243-452
               
               
               Cow position:chr7:8658637-8658429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:243-465
               
               
               Cow position:chr7:29479649-29479429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:243-466
               
               
               Cow position:chr7:54712543-54712321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:243-471
               
               
               Cow position:chr7:27509837-27509616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:243-471
               
               
               Cow position:chr7:48714976-48714749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:243-477
               
               
               Cow position:chr7:914166-913935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:245-471
               
               
               Cow position:chr7:32372978-32372756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:246-466
               
               
               Cow position:chr7:25873218-25873001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:247-431
               
               
               Cow position:chr7:52758588-52758412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:247-466
               
               
               Cow position:chr7:39150068-39149843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 214

               
               
               Conread position:247-471
               
               
               Cow position:chr7:26012557-26012325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):85, 164

               
               
               Conread position:247-475
               
               
               Cow position:chr7:26911322-26911548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:248-459
               
               
               Cow position:chr7:6706417-6706205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:248-466
               
               
               Cow position:chr7:4582611-4582826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:248-475
               
               
               Cow position:chr7:9075169-9074946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:248-475
               
               
               Cow position:chr7:24932300-24932525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:248-477
               
               
               Cow position:chr7:40425195-40425425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:250-418
               
               
               Cow position:chr7:48696070-48695909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:250-453
               
               
               Cow position:chr7:21166127-21166333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:250-455
               
               
               Cow position:chr7:61778965-61778757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:250-460
               
               
               Cow position:chr7:9781609-9781819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-466
               
               
               Cow position:chr7:17757148-17756940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:250-466
               
               
               Cow position:chr7:64228777-64228994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-473
               
               
               Cow position:chr7:8877995-8877772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-475
               
               
               Cow position:chr7:3773151-3773378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:250-475
               
               
               Cow position:chr7:34428691-34428465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:250-475
               
               
               Cow position:chr7:53097706-53097481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-475
               
               
               Cow position:chr7:58841763-58841539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:251-477
               
               
               Cow position:chr7:8777322-8777088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 53

               
               
               Conread position:253-470
               
               
               Cow position:chr7:46105770-46105987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:253-475
               
               
               Cow position:chr7:10261-10035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 56

               
               
               Conread position:253-475
               
               
               Cow position:chr7:67817010-67816793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:254-471
               
               
               Cow position:chr7:4418348-4418565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):170, 86

               
               
               Conread position:258-475
               
               
               Cow position:chr7:25703117-25703334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:259-474
               
               
               Cow position:chr7:46327661-46327876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:259-475
               
               
               Cow position:chr7:42593172-42593387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:260-466
               
               
               Cow position:chr7:24767124-24767329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:263-466
               
               
               Cow position:chr7:51638465-51638665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:264-465
               
               
               Cow position:chr7:20147239-20147436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:264-466
               
               
               Cow position:chr7:19095929-19096121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:264-471
               
               
               Cow position:chr7:40051658-40051858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:264-471
               
               
               Cow position:chr7:62603278-62603080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 56

               
               
               Conread position:264-471
               
               
               Cow position:chr7:66179690-66179898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:264-475
               
               
               Cow position:chr7:24850900-24851115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:265-454
               
               
               Cow position:chr7:43882181-43881991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:265-454
               
               
               Cow position:chr7:51673479-51673665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:265-466
               
               
               Cow position:chr7:34223794-34223592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:272-471
               
               
               Cow position:chr7:65689443-65689630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:279-466
               
               
               Cow position:chr7:50108194-50108378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:283-471
               
               
               Cow position:chr7:49783287-49783478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:285-464
               
               
               Cow position:chr7:27290442-27290628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:287-444
               
               
               Cow position:chr7:18253579-18253425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:292-475
               
               
               Cow position:chr7:39042671-39042493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:293-473
               
               
               Cow position:chr7:58428151-58427972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:294-466
               
               
               Cow position:chr7:42460519-42460332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 177

               
               
               Conread position:294-473
               
               
               Cow position:chr7:40991774-40991600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:296-471
               
               
               Cow position:chr7:5300323-5300494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:297-473
               
               
               Cow position:chr7:63968146-63968320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:297-475
               
               
               Cow position:chr7:53269268-53269083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:299-471
               
               
               Cow position:chr7:41445429-41445256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:300-471
               
               
               Cow position:chr7:24778046-24778219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:300-471
               
               
               Cow position:chr7:44094869-44095046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 162

               
               
               Conread position:305-441
               
               
               Cow position:chr7:21522494-21522356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:305-471
               
               
               Cow position:chr7:64102351-64102508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:309-467
               
               
               Cow position:chr7:44942510-44942354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:310-464
               
               
               Cow position:chr7:12212547-12212698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:310-466
               
               
               Cow position:chr7:11715767-11715610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 144

               
               
               Conread position:311-471
               
               
               Cow position:chr7:23640906-23641058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:315-441
               
               
               Cow position:chr7:17381204-17381078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:315-466
               
               
               Cow position:chr7:39528944-39529095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:317-470
               
               
               Cow position:chr7:19846103-19846249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:318-471
               
               
               Cow position:chr7:35742357-35742509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:319-475
               
               
               Cow position:chr7:33805013-33804852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:320-475
               
               
               Cow position:chr7:28090276-28090126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:334-477
               
               
               Cow position:chr7:14712167-14712308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:337-458
               
               
               Cow position:chr7:43784640-43784514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:337-466
               
               
               Cow position:chr7:58296859-58296986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:337-471
               
               
               Cow position:chr7:23619053-23619188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:339-471
               
               
               Cow position:chr7:33810714-33810580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:348-466
               
               
               Cow position:chr7:39401980-39401861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:349-466
               
               
               Cow position:chr7:24718511-24718629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:353-466
               
               
               Cow position:chr7:43055685-43055799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:364-475
               
               
               Cow position:chr7:12995164-12995051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:120-454
               
               
               Cow position:chr8:54211090-54210758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 5

               
               
               Conread position:139-465
               
               
               Cow position:chr8:43167833-43168153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:140-337
               
               
               Cow position:chr8:44569014-44568794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:145-465
               
               
               Cow position:chr8:35218567-35218238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:147-465
               
               
               Cow position:chr8:53866302-53865980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:147-477
               
               
               Cow position:chr8:2163704-2164044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 201

               
               
               Conread position:153-458
               
               
               Cow position:chr8:9050849-9051158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:154-471
               
               
               Cow position:chr8:13221664-13221985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:155-315
               
               
               Cow position:chr8:13732417-13732588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:155-375
               
               
               Cow position:chr8:3182647-3182423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:155-417
               
               
               Cow position:chr8:29414077-29413810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:155-466
               
               
               Cow position:chr8:37123156-37122845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 194

               
               
               Conread position:155-467
               
               
               Cow position:chr8:51695195-51695507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:155-471
               
               
               Cow position:chr8:35520223-35519895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 195

               
               
               Conread position:156-465
               
               
               Cow position:chr8:25349909-25349584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 203

               
               
               Conread position:158-415
               
               
               Cow position:chr8:15536811-15537078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:158-471
               
               
               Cow position:chr8:40888019-40888333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:162-416
               
               
               Cow position:chr8:33842929-33842674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:162-465
               
               
               Cow position:chr8:51904856-51905171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 58

               
               
               Conread position:162-466
               
               
               Cow position:chr8:30463585-30463263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):20, 199

               
               
               Conread position:162-473
               
               
               Cow position:chr8:1188114-1187780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:163-330
               
               
               Cow position:chr8:42846530-42846706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:163-337
               
               
               Cow position:chr8:11594219-11594030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:163-375
               
               
               Cow position:chr8:9583363-9583583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:163-400
               
               
               Cow position:chr8:33807527-33807791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:163-403
               
               
               Cow position:chr8:35185922-35185677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 189

               
               
               Conread position:163-407
               
               
               Cow position:chr8:37709334-37709080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:163-409
               
               
               Cow position:chr8:33218771-33219029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:163-411
               
               
               Cow position:chr8:25133754-25133500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):89, 183

               
               
               Conread position:163-418
               
               
               Cow position:chr8:20657180-20657444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):53, 185

               
               
               Conread position:163-438
               
               
               Cow position:chr8:13813241-13813525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:163-465
               
               
               Cow position:chr8:26229128-26228828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:163-465
               
               
               Cow position:chr8:49265121-49265435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:163-466
               
               
               Cow position:chr8:1327592-1327304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:163-466
               
               
               Cow position:chr8:28221387-28221693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:163-466
               
               
               Cow position:chr8:36505556-36505239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):79, 141

               
               
               Conread position:163-467
               
               
               Cow position:chr8:35210773-35211053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):144, 63

               
               
               Conread position:163-471
               
               
               Cow position:chr8:36375322-36375643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 197

               
               
               Conread position:163-471
               
               
               Cow position:chr8:44437952-44437631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:163-471
               
               
               Cow position:chr8:58520485-58520156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:163-475
               
               
               Cow position:chr8:642391-642706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:163-475
               
               
               Cow position:chr8:35583375-35583713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:163-475
               
               
               Cow position:chr8:43027474-43027799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 121

               
               
               Conread position:163-475
               
               
               Cow position:chr8:53383595-53383262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:163-477
               
               
               Cow position:chr8:55305263-55304934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 187

               
               
               Conread position:164-406
               
               
               Cow position:chr8:37487117-37487369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:164-416
               
               
               Cow position:chr8:6468986-6469242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 181

               
               
               Conread position:164-444
               
               
               Cow position:chr8:40930480-40930206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:164-444
               
               
               Cow position:chr8:57218991-57218699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 151

               
               
               Conread position:164-453
               
               
               Cow position:chr8:19512298-19512580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):145, 32

               
               
               Conread position:164-461
               
               
               Cow position:chr8:8134322-8134627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 186

               
               
               Conread position:164-461
               
               
               Cow position:chr8:34288101-34287806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:164-465
               
               
               Cow position:chr8:1169105-1169405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:164-465
               
               
               Cow position:chr8:21282237-21281937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 154

               
               
               Conread position:164-466
               
               
               Cow position:chr8:3339239-3338956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:164-466
               
               
               Cow position:chr8:46616584-46616284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:164-466
               
               
               Cow position:chr8:51579430-51579142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 53

               
               
               Conread position:164-469
               
               
               Cow position:chr8:32827500-32827808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:164-475
               
               
               Cow position:chr8:13976070-13975754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:165-469
               
               
               Cow position:chr8:9130748-9131061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:166-465
               
               
               Cow position:chr8:31690982-31690677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:166-471
               
               
               Cow position:chr8:1012159-1011846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:166-475
               
               
               Cow position:chr8:39896431-39896124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 184

               
               
               Conread position:167-423
               
               
               Cow position:chr8:18033743-18034011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):52, 180

               
               
               Conread position:167-460
               
               
               Cow position:chr8:55829171-55829459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:167-461
               
               
               Cow position:chr8:60320691-60320399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:167-471
               
               
               Cow position:chr8:10297562-10297869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):63, 178

               
               
               Conread position:170-477
               
               
               Cow position:chr8:55885140-55884831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:171-466
               
               
               Cow position:chr8:36249251-36249550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:172-454
               
               
               Cow position:chr8:37334334-37334054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:181-466
               
               
               Cow position:chr8:20684123-20683840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:182-415
               
               
               Cow position:chr8:11526609-11526386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:192-474
               
               
               Cow position:chr8:48512872-48513144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:196-415
               
               
               Cow position:chr8:39969671-39969901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:196-471
               
               
               Cow position:chr8:11783131-11782848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 149

               
               
               Conread position:206-466
               
               
               Cow position:chr8:26304262-26304527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:208-444
               
               
               Cow position:chr8:41905496-41905725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:208-444
               
               
               Cow position:chr8:41914404-41914633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:208-465
               
               
               Cow position:chr8:1107052-1107316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:208-476
               
               
               Cow position:chr8:40143726-40143993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:209-472
               
               
               Cow position:chr8:21858593-21858845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:210-477
               
               
               Cow position:chr8:37192487-37192228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:212-466
               
               
               Cow position:chr8:2814746-2814493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:212-466
               
               
               Cow position:chr8:39630894-39630645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:212-471
               
               
               Cow position:chr8:35991172-35990916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:212-471
               
               
               Cow position:chr8:43112724-43112970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 125

               
               
               Conread position:212-475
               
               
               Cow position:chr8:25628469-25628209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):244, 53

               
               
               Conread position:213-376
               
               
               Cow position:chr8:28210103-28209938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):96, 147

               
               
               Conread position:213-409
               
               
               Cow position:chr8:29958519-29958330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:213-410
               
               
               Cow position:chr8:47170064-47169869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:213-411
               
               
               Cow position:chr8:6616670-6616866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-411
               
               
               Cow position:chr8:49305629-49305820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 134

               
               
               Conread position:213-412
               
               
               Cow position:chr8:55974695-55974891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-413
               
               
               Cow position:chr8:10846360-10846152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:213-416
               
               
               Cow position:chr8:49659248-49659051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-419
               
               
               Cow position:chr8:4525202-4525002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-419
               
               
               Cow position:chr8:36672039-36671833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 130

               
               
               Conread position:213-419
               
               
               Cow position:chr8:39487517-39487719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-419
               
               
               Cow position:chr8:49656310-49656507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-419
               
               
               Cow position:chr8:51208904-51208691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:213-420
               
               
               Cow position:chr8:60485329-60485126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:213-432
               
               
               Cow position:chr8:53552796-53552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):98, 129

               
               
               Conread position:213-443
               
               
               Cow position:chr8:3922595-3922822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-443
               
               
               Cow position:chr8:53633103-53633334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-446
               
               
               Cow position:chr8:9652791-9652566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-446
               
               
               Cow position:chr8:33805644-33805406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-447
               
               
               Cow position:chr8:54177594-54177824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-448
               
               
               Cow position:chr8:15922148-15922379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-449
               
               
               Cow position:chr8:19204325-19204558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-451
               
               
               Cow position:chr8:15394741-15394977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-451
               
               
               Cow position:chr8:53360118-53360346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-453
               
               
               Cow position:chr8:20157639-20157886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-454
               
               
               Cow position:chr8:39592709-39592470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:213-454
               
               
               Cow position:chr8:54032000-54031755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-454
               
               
               Cow position:chr8:54147787-54147546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-461
               
               
               Cow position:chr8:21077704-21077466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:213-461
               
               
               Cow position:chr8:39174121-39174370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 128

               
               
               Conread position:213-463
               
               
               Cow position:chr8:6194098-6193843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:213-464
               
               
               Cow position:chr8:42762310-42762558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-465
               
               
               Cow position:chr8:1024080-1023836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-465
               
               
               Cow position:chr8:2774908-2774657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr8:12058843-12058589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr8:35504114-35504364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:213-465
               
               
               Cow position:chr8:48527840-48528091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:213-466
               
               
               Cow position:chr8:1620605-1620857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-466
               
               
               Cow position:chr8:4940198-4940439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:213-466
               
               
               Cow position:chr8:7609814-7610070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:213-466
               
               
               Cow position:chr8:8189938-8190195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 139

               
               
               Conread position:213-466
               
               
               Cow position:chr8:8323749-8324003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr8:9509774-9510018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-466
               
               
               Cow position:chr8:10456587-10456336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr8:18017639-18017388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr8:22273981-22273731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chr8:30324443-30324186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr8:33432380-33432127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:213-466
               
               
               Cow position:chr8:37291969-37292215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-466
               
               
               Cow position:chr8:39845735-39845493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr8:42794201-42794443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr8:43439732-43439481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:213-467
               
               
               Cow position:chr8:1999750-1999488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr8:33586334-33586082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-467
               
               
               Cow position:chr8:61128575-61128827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:213-469
               
               
               Cow position:chr8:60455307-60455063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:213-471
               
               
               Cow position:chr8:1297631-1297378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr8:6073695-6073949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr8:6232771-6233032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr8:8668066-8668334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr8:13374666-13374413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:213-471
               
               
               Cow position:chr8:16413693-16413944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:213-471
               
               
               Cow position:chr8:17199312-17199569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr8:20102657-20102906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:213-471
               
               
               Cow position:chr8:20837240-20836990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):207, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr8:21826617-21826887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:213-471
               
               
               Cow position:chr8:23179424-23179678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr8:25455526-25455274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:213-471
               
               
               Cow position:chr8:25591935-25591688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:213-471
               
               
               Cow position:chr8:33406723-33406978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 151

               
               
               Conread position:213-471
               
               
               Cow position:chr8:35563455-35563197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr8:37298597-37298344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:213-471
               
               
               Cow position:chr8:38137543-38137286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr8:38711714-38711467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 98

               
               
               Conread position:213-471
               
               
               Cow position:chr8:38861581-38861831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-471
               
               
               Cow position:chr8:46235816-46235569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 64

               
               
               Conread position:213-471
               
               
               Cow position:chr8:47135895-47136142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:213-471
               
               
               Cow position:chr8:47664785-47665039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:213-471
               
               
               Cow position:chr8:60488510-60488760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:213-472
               
               
               Cow position:chr8:25388259-25388007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:213-473
               
               
               Cow position:chr8:12778770-12779021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-473
               
               
               Cow position:chr8:20339396-20339147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:213-473
               
               
               Cow position:chr8:37635873-37636128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-474
               
               
               Cow position:chr8:24513026-24513284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-475
               
               
               Cow position:chr8:3891305-3891565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:213-475
               
               
               Cow position:chr8:8097146-8097410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:213-475
               
               
               Cow position:chr8:37347334-37347599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-475
               
               
               Cow position:chr8:37882466-37882203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-475
               
               
               Cow position:chr8:45127582-45127839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:213-477
               
               
               Cow position:chr8:15391038-15391302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):98, 82

               
               
               Conread position:213-477
               
               
               Cow position:chr8:26625989-26625733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:214-419
               
               
               Cow position:chr8:4552628-4552834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:215-433
               
               
               Cow position:chr8:34042571-34042356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:215-439
               
               
               Cow position:chr8:21911755-21911537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:215-454
               
               
               Cow position:chr8:58876189-58875945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:215-471
               
               
               Cow position:chr8:24471777-24471516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:215-475
               
               
               Cow position:chr8:58417801-58417562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 74

               
               
               Conread position:215-477
               
               
               Cow position:chr8:48956061-48955794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:216-471
               
               
               Cow position:chr8:20783147-20783399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:216-471
               
               
               Cow position:chr8:24390078-24390333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:217-466
               
               
               Cow position:chr8:21222308-21222068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:217-477
               
               
               Cow position:chr8:4500608-4500350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:218-461
               
               
               Cow position:chr8:6484815-6485057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:218-461
               
               
               Cow position:chr8:24371601-24371840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:218-465
               
               
               Cow position:chr8:21083172-21083421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:218-465
               
               
               Cow position:chr8:23585834-23586084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:218-466
               
               
               Cow position:chr8:8011029-8010774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:218-471
               
               
               Cow position:chr8:5980057-5979807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-471
               
               
               Cow position:chr8:26386096-26386354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 97

               
               
               Conread position:218-471
               
               
               Cow position:chr8:29026522-29026770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-473
               
               
               Cow position:chr8:11078985-11078733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:218-477
               
               
               Cow position:chr8:1394348-1394088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:219-404
               
               
               Cow position:chr8:61443101-61443283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-434
               
               
               Cow position:chr8:40579300-40579510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-463
               
               
               Cow position:chr8:35827690-35827933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-464
               
               
               Cow position:chr8:38894126-38893882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr8:935819-935573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-471
               
               
               Cow position:chr8:16507676-16507923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr8:21382577-21382827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:221-414
               
               
               Cow position:chr8:16505603-16505418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:221-419
               
               
               Cow position:chr8:6910050-6910242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:221-430
               
               
               Cow position:chr8:4992671-4992466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:221-461
               
               
               Cow position:chr8:5867188-5866952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-464
               
               
               Cow position:chr8:40032707-40032940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-465
               
               
               Cow position:chr8:19642580-19642342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:221-466
               
               
               Cow position:chr8:19995620-19995860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr8:28228357-28228118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-466
               
               
               Cow position:chr8:28987811-28987577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr8:53558497-53558737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:221-467
               
               
               Cow position:chr8:7149578-7149825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:221-471
               
               
               Cow position:chr8:10970946-10970697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr8:19011683-19011929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr8:24202029-24201772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr8:24328739-24328981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:221-471
               
               
               Cow position:chr8:28313610-28313856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr8:29624857-29625096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr8:32093985-32093744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr8:55716864-55716626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:221-473
               
               
               Cow position:chr8:13321512-13321757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:221-473
               
               
               Cow position:chr8:37862683-37862441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr8:20926519-20926786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:222-443
               
               
               Cow position:chr8:55095991-55095776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:222-471
               
               
               Cow position:chr8:23030540-23030291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:223-465
               
               
               Cow position:chr8:45446980-45447230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 240

               
               
               Conread position:228-404
               
               
               Cow position:chr8:34774603-34774431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 82

               
               
               Conread position:228-433
               
               
               Cow position:chr8:17232255-17232460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:228-464
               
               
               Cow position:chr8:17103321-17103547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):195, 87

               
               
               Conread position:228-464
               
               
               Cow position:chr8:18207037-18207261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:228-465
               
               
               Cow position:chr8:554079-554314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:228-467
               
               
               Cow position:chr8:33640471-33640233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 81

               
               
               Conread position:228-471
               
               
               Cow position:chr8:39807705-39807460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 161

               
               
               Conread position:228-475
               
               
               Cow position:chr8:39144851-39144615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:229-438
               
               
               Cow position:chr8:34171978-34171774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:229-449
               
               
               Cow position:chr8:6224333-6224548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:229-471
               
               
               Cow position:chr8:1304011-1303771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:230-443
               
               
               Cow position:chr8:46874655-46874447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:230-460
               
               
               Cow position:chr8:9942423-9942650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:230-471
               
               
               Cow position:chr8:27731141-27730908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:230-471
               
               
               Cow position:chr8:32332370-32332623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 122

               
               
               Conread position:230-471
               
               
               Cow position:chr8:49687114-49687354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:230-475
               
               
               Cow position:chr8:46952619-46952380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:236-427
               
               
               Cow position:chr8:55283902-55283709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:237-454
               
               
               Cow position:chr8:19474986-19475204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:237-471
               
               
               Cow position:chr8:37571607-37571839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:237-475
               
               
               Cow position:chr8:5894041-5893800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:238-410
               
               
               Cow position:chr8:59188126-59187956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:238-438
               
               
               Cow position:chr8:55900930-55901129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:238-441
               
               
               Cow position:chr8:16144226-16144023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:238-443
               
               
               Cow position:chr8:33693602-33693404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):186, 92

               
               
               Conread position:238-447
               
               
               Cow position:chr8:13723505-13723298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-464
               
               
               Cow position:chr8:56507209-56507414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):186, 45

               
               
               Conread position:238-465
               
               
               Cow position:chr8:20307074-20306856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 48

               
               
               Conread position:238-465
               
               
               Cow position:chr8:24237847-24237627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:238-466
               
               
               Cow position:chr8:537817-538045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:238-466
               
               
               Cow position:chr8:27138699-27138919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-471
               
               
               Cow position:chr8:5224949-5225172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:238-471
               
               
               Cow position:chr8:11606422-11606200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr8:17179938-17180160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-471
               
               
               Cow position:chr8:18081629-18081406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:238-472
               
               
               Cow position:chr8:1936943-1936711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:238-474
               
               
               Cow position:chr8:33125590-33125365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:238-475
               
               
               Cow position:chr8:3446001-3446237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:238-477
               
               
               Cow position:chr8:669469-669710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:238-477
               
               
               Cow position:chr8:3704719-3704477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-477
               
               
               Cow position:chr8:25871823-25871585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-477
               
               
               Cow position:chr8:30244748-30244974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):186, 45

               
               
               Conread position:238-477
               
               
               Cow position:chr8:30892906-30893145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:239-453
               
               
               Cow position:chr8:43228068-43227855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):100, 62

               
               
               Conread position:239-475
               
               
               Cow position:chr8:18831838-18831594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:239-475
               
               
               Cow position:chr8:42145680-42145912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:239-477
               
               
               Cow position:chr8:10263070-10263304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:240-471
               
               
               Cow position:chr8:22756114-22755884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:240-471
               
               
               Cow position:chr8:50310757-50310989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:240-475
               
               
               Cow position:chr8:9917977-9917744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:242-433
               
               
               Cow position:chr8:52197365-52197556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:242-454
               
               
               Cow position:chr8:8986853-8987061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:242-471
               
               
               Cow position:chr8:1473155-1472927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:243-471
               
               
               Cow position:chr8:4924658-4924434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:243-471
               
               
               Cow position:chr8:32620892-32621126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:243-477
               
               
               Cow position:chr8:3760076-3760306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:243-477
               
               
               Cow position:chr8:27608556-27608307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 242

               
               
               Conread position:247-439
               
               
               Cow position:chr8:11278018-11278210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:247-454
               
               
               Cow position:chr8:1253046-1252835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:247-462
               
               
               Cow position:chr8:14947209-14947421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:247-473
               
               
               Cow position:chr8:7064200-7064418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:247-475
               
               
               Cow position:chr8:12214094-12213872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:248-443
               
               
               Cow position:chr8:48775905-48775712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:248-464
               
               
               Cow position:chr8:3015567-3015346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 122

               
               
               Conread position:248-466
               
               
               Cow position:chr8:59043012-59043231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:248-471
               
               
               Cow position:chr8:39181683-39181903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:248-471
               
               
               Cow position:chr8:41627030-41627254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-477
               
               
               Cow position:chr8:17046676-17046907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:249-465
               
               
               Cow position:chr8:57208393-57208604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:250-443
               
               
               Cow position:chr8:36768559-36768367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-453
               
               
               Cow position:chr8:47342821-47342617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:250-459
               
               
               Cow position:chr8:31776275-31776065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:250-460
               
               
               Cow position:chr8:47751830-47752038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:250-466
               
               
               Cow position:chr8:18730531-18730311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr8:19546873-19546651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:250-471
               
               
               Cow position:chr8:29149781-29150006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-477
               
               
               Cow position:chr8:43687638-43687401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 215

               
               
               Conread position:253-475
               
               
               Cow position:chr8:38780787-38780573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):171, 42

               
               
               Conread position:254-466
               
               
               Cow position:chr8:51694734-51694943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:255-466
               
               
               Cow position:chr8:58171513-58171307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:255-471
               
               
               Cow position:chr8:31297345-31297133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:258-464
               
               
               Cow position:chr8:31814969-31815173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:259-471
               
               
               Cow position:chr8:37391285-37391491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:259-471
               
               
               Cow position:chr8:41900569-41900775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:260-471
               
               
               Cow position:chr8:20563690-20563899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:262-463
               
               
               Cow position:chr8:25847688-25847492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:264-460
               
               
               Cow position:chr8:16487232-16487432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:265-475
               
               
               Cow position:chr8:25579606-25579394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:267-471
               
               
               Cow position:chr8:5515773-5515577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:271-473
               
               
               Cow position:chr8:40549551-40549750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:273-454
               
               
               Cow position:chr8:48422878-48422698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:276-471
               
               
               Cow position:chr8:31253871-31253677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:280-444
               
               
               Cow position:chr8:9517120-9517286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:280-473
               
               
               Cow position:chr8:29765314-29765118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:280-475
               
               
               Cow position:chr8:225313-225508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:281-471
               
               
               Cow position:chr8:11135214-11135392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:283-471
               
               
               Cow position:chr8:45689848-45690038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:285-466
               
               
               Cow position:chr8:59438231-59438409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:297-467
               
               
               Cow position:chr8:21961284-21961118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:299-465
               
               
               Cow position:chr8:20112149-20111985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:300-471
               
               
               Cow position:chr8:35965997-35966164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:308-466
               
               
               Cow position:chr8:20384805-20384651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:309-471
               
               
               Cow position:chr8:10802140-10802299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:309-471
               
               
               Cow position:chr8:39556007-39555847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:310-448
               
               
               Cow position:chr8:35555531-35555666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-466
               
               
               Cow position:chr8:36465227-36465077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr8:1834942-1834787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr8:24952369-24952206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:310-471
               
               
               Cow position:chr8:37148143-37147985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:310-475
               
               
               Cow position:chr8:56581186-56581345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:310-477
               
               
               Cow position:chr8:28412592-28412763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:313-471
               
               
               Cow position:chr8:51480813-51480964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:315-465
               
               
               Cow position:chr8:32295712-32295860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:329-471
               
               
               Cow position:chr8:35497883-35497733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 135

               
               
               Conread position:337-471
               
               
               Cow position:chr8:5484872-5485011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:339-471
               
               
               Cow position:chr8:28509488-28509622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:340-469
               
               
               Cow position:chr8:44882942-44882813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:342-471
               
               
               Cow position:chr8:36397921-36398050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:348-471
               
               
               Cow position:chr8:54306069-54305946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:358-471
               
               
               Cow position:chr8:53929602-53929717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:142-439
               
               
               Cow position:chr9:5398973-5399280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 201

               
               
               Conread position:142-477
               
               
               Cow position:chr9:8599442-8599785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 152

               
               
               Conread position:144-469
               
               
               Cow position:chr9:20896741-20897073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:144-471
               
               
               Cow position:chr9:29808296-29808634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:146-471
               
               
               Cow position:chr9:8919825-8920172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:151-475
               
               
               Cow position:chr9:17799463-17799810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 209

               
               
               Conread position:155-331
               
               
               Cow position:chr9:29792371-29792186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:155-466
               
               
               Cow position:chr9:28947718-28948021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:155-466
               
               
               Cow position:chr9:41789134-41789452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:155-477
               
               
               Cow position:chr9:1916139-1916472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 197

               
               
               Conread position:156-475
               
               
               Cow position:chr9:19637786-19637459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:159-475
               
               
               Cow position:chr9:34468723-34468402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:162-466
               
               
               Cow position:chr9:39152822-39152513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:162-475
               
               
               Cow position:chr9:25468913-25469217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:163-336
               
               
               Cow position:chr9:26559755-26559567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:163-346
               
               
               Cow position:chr9:27347658-27347848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 154

               
               
               Conread position:163-392
               
               
               Cow position:chr9:23797103-23797331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:163-448
               
               
               Cow position:chr9:34203988-34204282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:163-454
               
               
               Cow position:chr9:33668584-33668883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:163-460
               
               
               Cow position:chr9:5757137-5756840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 190

               
               
               Conread position:163-461
               
               
               Cow position:chr9:389157-388848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:163-463
               
               
               Cow position:chr9:14960811-14961114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 55

               
               
               Conread position:163-463
               
               
               Cow position:chr9:16745540-16745842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:163-465
               
               
               Cow position:chr9:3387556-3387859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:163-465
               
               
               Cow position:chr9:6879641-6879934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:163-465
               
               
               Cow position:chr9:42037512-42037820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 177

               
               
               Conread position:163-465
               
               
               Cow position:chr9:50544777-50544459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:163-465
               
               
               Cow position:chr9:61847275-61846981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):179, 63

               
               
               Conread position:163-466
               
               
               Cow position:chr9:39428941-39428631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:163-466
               
               
               Cow position:chr9:64091539-64091853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:163-470
               
               
               Cow position:chr9:15684928-15684619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:163-470
               
               
               Cow position:chr9:56860875-56861187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:163-471
               
               
               Cow position:chr9:5392913-5393221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:163-471
               
               
               Cow position:chr9:41679602-41679919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:163-475
               
               
               Cow position:chr9:4861236-4861571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:163-475
               
               
               Cow position:chr9:9823641-9823323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:163-475
               
               
               Cow position:chr9:22318201-22318525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):56, 195

               
               
               Conread position:163-475
               
               
               Cow position:chr9:35375303-35375607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:163-475
               
               
               Cow position:chr9:55321494-55321820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:163-477
               
               
               Cow position:chr9:5433485-5433818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 193

               
               
               Conread position:163-477
               
               
               Cow position:chr9:10667162-10666847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:164-389
               
               
               Cow position:chr9:38289453-38289233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:164-435
               
               
               Cow position:chr9:41486373-41486102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:164-436
               
               
               Cow position:chr9:28983042-28983324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:164-466
               
               
               Cow position:chr9:5209443-5209749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:164-466
               
               
               Cow position:chr9:6852210-6851899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:164-466
               
               
               Cow position:chr9:20090901-20091210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:164-466
               
               
               Cow position:chr9:32732823-32732516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:164-471
               
               
               Cow position:chr9:25546498-25546810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):67, 190

               
               
               Conread position:164-475
               
               
               Cow position:chr9:23042640-23042959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:164-475
               
               
               Cow position:chr9:32115739-32115430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:164-475
               
               
               Cow position:chr9:54681362-54681685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:165-395
               
               
               Cow position:chr9:25400345-25400099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:165-441
               
               
               Cow position:chr9:1867313-1867594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:165-461
               
               
               Cow position:chr9:43911794-43912089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:165-466
               
               
               Cow position:chr9:18111000-18110696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:165-466
               
               
               Cow position:chr9:30137965-30138297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 246

               
               
               Conread position:165-471
               
               
               Cow position:chr9:42497670-42498003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):51, 186

               
               
               Conread position:165-471
               
               
               Cow position:chr9:59795416-59795109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:166-466
               
               
               Cow position:chr9:20961398-20961117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:168-466
               
               
               Cow position:chr9:51721042-51720733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 185

               
               
               Conread position:170-471
               
               
               Cow position:chr9:44709702-44709999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:171-464
               
               
               Cow position:chr9:32676547-32676849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):16, 173

               
               
               Conread position:173-475
               
               
               Cow position:chr9:48627905-48628210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 166

               
               
               Conread position:175-471
               
               
               Cow position:chr9:40215124-40215417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:175-477
               
               
               Cow position:chr9:1370809-1371117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:181-466
               
               
               Cow position:chr9:55288004-55287729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:183-471
               
               
               Cow position:chr9:19493576-19493289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:189-466
               
               
               Cow position:chr9:32817257-32816965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:189-471
               
               
               Cow position:chr9:43870852-43871153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:190-417
               
               
               Cow position:chr9:53431237-53430999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:196-464
               
               
               Cow position:chr9:34106605-34106889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:197-477
               
               
               Cow position:chr9:23541491-23541229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:198-471
               
               
               Cow position:chr9:7634174-7634447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:200-465
               
               
               Cow position:chr9:3931858-3932131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:203-473
               
               
               Cow position:chr9:20416598-20416339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:206-448
               
               
               Cow position:chr9:23943197-23943434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:206-471
               
               
               Cow position:chr9:4580492-4580243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:211-471
               
               
               Cow position:chr9:36445538-36445797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:213-390
               
               
               Cow position:chr9:8834208-8834037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:213-392
               
               
               Cow position:chr9:43342250-43342424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 114

               
               
               Conread position:213-409
               
               
               Cow position:chr9:1729755-1729560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-409
               
               
               Cow position:chr9:55889734-55889922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-413
               
               
               Cow position:chr9:38645425-38645227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:213-414
               
               
               Cow position:chr9:38941513-38941315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-416
               
               
               Cow position:chr9:52598802-52598605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):156, 90

               
               
               Conread position:213-418
               
               
               Cow position:chr9:25583749-25583951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:213-419
               
               
               Cow position:chr9:1878083-1877886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:213-419
               
               
               Cow position:chr9:4630023-4630226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-419
               
               
               Cow position:chr9:29339394-29339203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-423
               
               
               Cow position:chr9:9311777-9311985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-431
               
               
               Cow position:chr9:38846414-38846209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:213-432
               
               
               Cow position:chr9:44396581-44396795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-433
               
               
               Cow position:chr9:31359523-31359737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:213-433
               
               
               Cow position:chr9:40005394-40005612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-435
               
               
               Cow position:chr9:51566576-51566356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:213-439
               
               
               Cow position:chr9:39681258-39681482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-440
               
               
               Cow position:chr9:10819909-10819689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:213-442
               
               
               Cow position:chr9:35105871-35105645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-443
               
               
               Cow position:chr9:4263170-4262946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:213-443
               
               
               Cow position:chr9:17310642-17310416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-443
               
               
               Cow position:chr9:17411274-17411046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr9:22443708-22443481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chr9:34283873-34284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-443
               
               
               Cow position:chr9:41282934-41283161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-444
               
               
               Cow position:chr9:52839960-52839739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-445
               
               
               Cow position:chr9:32670028-32669799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-453
               
               
               Cow position:chr9:19713999-19714232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-454
               
               
               Cow position:chr9:27279228-27279467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-455
               
               
               Cow position:chr9:31079160-31078924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:213-460
               
               
               Cow position:chr9:47446095-47445864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:213-464
               
               
               Cow position:chr9:50081121-50080879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:213-465
               
               
               Cow position:chr9:1520820-1520566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:213-465
               
               
               Cow position:chr9:12280890-12281137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chr9:26279250-26279009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-465
               
               
               Cow position:chr9:32307312-32307069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:213-465
               
               
               Cow position:chr9:42062018-42062280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:213-465
               
               
               Cow position:chr9:45756282-45756525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chr9:8288537-8288786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-466
               
               
               Cow position:chr9:9461735-9461486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:213-466
               
               
               Cow position:chr9:10650380-10650134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:213-466
               
               
               Cow position:chr9:20579675-20579437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-466
               
               
               Cow position:chr9:22434009-22433763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:213-466
               
               
               Cow position:chr9:30477855-30477612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:213-466
               
               
               Cow position:chr9:31346869-31347123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr9:33940525-33940776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-466
               
               
               Cow position:chr9:47868935-47869172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-466
               
               
               Cow position:chr9:56011418-56011662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-467
               
               
               Cow position:chr9:8723713-8723963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:213-467
               
               
               Cow position:chr9:11123564-11123315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:213-467
               
               
               Cow position:chr9:31814467-31814205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-468
               
               
               Cow position:chr9:5263419-5263671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-470
               
               
               Cow position:chr9:58204592-58204832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:213-471
               
               
               Cow position:chr9:5245772-5246029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 129

               
               
               Conread position:213-471
               
               
               Cow position:chr9:5763711-5763460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:213-471
               
               
               Cow position:chr9:6192540-6192289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:213-471
               
               
               Cow position:chr9:6839912-6840181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr9:8901307-8901050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:213-471
               
               
               Cow position:chr9:9443682-9443423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):195, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr9:9596033-9595781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:213-471
               
               
               Cow position:chr9:9654388-9654138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr9:9815332-9815589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr9:11168649-11168904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:213-471
               
               
               Cow position:chr9:15806004-15805751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-471
               
               
               Cow position:chr9:18217180-18216930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-471
               
               
               Cow position:chr9:28354436-28354692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 130

               
               
               Conread position:213-471
               
               
               Cow position:chr9:29185218-29184959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 143

               
               
               Conread position:213-471
               
               
               Cow position:chr9:33119969-33119712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr9:34286718-34286974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 148

               
               
               Conread position:213-471
               
               
               Cow position:chr9:35167095-35167346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-471
               
               
               Cow position:chr9:38961509-38961260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:213-471
               
               
               Cow position:chr9:42446064-42445805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr9:50139204-50139459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):151, 91

               
               
               Conread position:213-471
               
               
               Cow position:chr9:50543508-50543250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:213-471
               
               
               Cow position:chr9:55075209-55074956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:213-471
               
               
               Cow position:chr9:61997684-61997425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:213-471
               
               
               Cow position:chr9:62668169-62668426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:213-471
               
               
               Cow position:chr9:64050642-64050382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-472
               
               
               Cow position:chr9:17518570-17518314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-473
               
               
               Cow position:chr9:10309077-10308832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:213-475
               
               
               Cow position:chr9:5327177-5327437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chr9:8337946-8338209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-475
               
               
               Cow position:chr9:12226058-12225804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:213-475
               
               
               Cow position:chr9:29006477-29006744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:213-475
               
               
               Cow position:chr9:43443723-43443974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:213-475
               
               
               Cow position:chr9:54528433-54528694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:213-475
               
               
               Cow position:chr9:56772995-56773262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:213-477
               
               
               Cow position:chr9:1751256-1751515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:213-477
               
               
               Cow position:chr9:6934154-6933893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:213-477
               
               
               Cow position:chr9:9552010-9552268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-477
               
               
               Cow position:chr9:11319715-11319449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-477
               
               
               Cow position:chr9:22696142-22696401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chr9:29684064-29684328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:213-477
               
               
               Cow position:chr9:30652790-30652524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:213-477
               
               
               Cow position:chr9:55084382-55084116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:213-477
               
               
               Cow position:chr9:63745734-63745993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:214-412
               
               
               Cow position:chr9:64064443-64064246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:214-443
               
               
               Cow position:chr9:15225376-15225152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:214-466
               
               
               Cow position:chr9:47906359-47906111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:214-472
               
               
               Cow position:chr9:26085978-26086238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:215-374
               
               
               Cow position:chr9:24429175-24429017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:215-466
               
               
               Cow position:chr9:33681580-33681853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 137

               
               
               Conread position:215-467
               
               
               Cow position:chr9:25921744-25921997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:215-471
               
               
               Cow position:chr9:5319543-5319803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:215-471
               
               
               Cow position:chr9:5594424-5594674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:215-471
               
               
               Cow position:chr9:34902180-34901942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 80

               
               
               Conread position:215-475
               
               
               Cow position:chr9:22152164-22151904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:217-419
               
               
               Cow position:chr9:52513524-52513331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:217-471
               
               
               Cow position:chr9:3070486-3070244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):207, 19

               
               
               Conread position:218-409
               
               
               Cow position:chr9:26310429-26310620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 125

               
               
               Conread position:218-447
               
               
               Cow position:chr9:62399886-62400109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:218-453
               
               
               Cow position:chr9:13169738-13169507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-459
               
               
               Cow position:chr9:36843717-36843949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:218-477
               
               
               Cow position:chr9:38792940-38793198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:219-385
               
               
               Cow position:chr9:24652330-24652499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-444
               
               
               Cow position:chr9:51557561-51557351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:219-464
               
               
               Cow position:chr9:64105825-64106074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr9:31557801-31557560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:219-466
               
               
               Cow position:chr9:34309955-34310199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:219-471
               
               
               Cow position:chr9:55118013-55118253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):205, 9

               
               
               Conread position:219-471
               
               
               Cow position:chr9:55256626-55256377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-475
               
               
               Cow position:chr9:33219023-33218769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:221-414
               
               
               Cow position:chr9:19903010-19903196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-419
               
               
               Cow position:chr9:53326825-53326629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:221-447
               
               
               Cow position:chr9:41394719-41394504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:221-454
               
               
               Cow position:chr9:33696953-33697184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:221-464
               
               
               Cow position:chr9:34958128-34957888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr9:45285607-45285362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr9:58979327-58979566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:221-467
               
               
               Cow position:chr9:24872764-24873001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:221-471
               
               
               Cow position:chr9:9723948-9723710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chr9:12910474-12910225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:221-471
               
               
               Cow position:chr9:23388744-23388504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr9:25556899-25557139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:221-471
               
               
               Cow position:chr9:32371823-32371587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chr9:48107191-48106944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:221-471
               
               
               Cow position:chr9:52407088-52407343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:221-472
               
               
               Cow position:chr9:46316853-46316611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-473
               
               
               Cow position:chr9:60027125-60027373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:221-476
               
               
               Cow position:chr9:7362956-7363202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:221-477
               
               
               Cow position:chr9:19555304-19555554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-477
               
               
               Cow position:chr9:26057513-26057259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:221-477
               
               
               Cow position:chr9:41513560-41513804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:222-405
               
               
               Cow position:chr9:55532742-55532922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:222-464
               
               
               Cow position:chr9:13670561-13670799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:228-439
               
               
               Cow position:chr9:54178486-54178290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):196, 82

               
               
               Conread position:228-459
               
               
               Cow position:chr9:3220070-3220300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:228-471
               
               
               Cow position:chr9:5509659-5509895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:228-471
               
               
               Cow position:chr9:10144541-10144302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:228-471
               
               
               Cow position:chr9:33597920-33598155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:228-471
               
               
               Cow position:chr9:52578603-52578363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:229-443
               
               
               Cow position:chr9:59386834-59386629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 111

               
               
               Conread position:229-452
               
               
               Cow position:chr9:33114281-33114501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:229-466
               
               
               Cow position:chr9:49709782-49710007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:229-467
               
               
               Cow position:chr9:20847870-20848101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:229-471
               
               
               Cow position:chr9:1949852-1950090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:230-434
               
               
               Cow position:chr9:34410460-34410258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 105

               
               
               Conread position:230-448
               
               
               Cow position:chr9:43936881-43937091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:230-454
               
               
               Cow position:chr9:26345035-26344811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:230-466
               
               
               Cow position:chr9:37677830-37678056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:230-471
               
               
               Cow position:chr9:9753455-9753215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:231-465
               
               
               Cow position:chr9:49764600-49764823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:231-466
               
               
               Cow position:chr9:5227235-5226999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):73, 77

               
               
               Conread position:232-471
               
               
               Cow position:chr9:28726787-28726547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:237-466
               
               
               Cow position:chr9:20989515-20989285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:237-466
               
               
               Cow position:chr9:35028222-35027997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:237-467
               
               
               Cow position:chr9:5456232-5456004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:237-477
               
               
               Cow position:chr9:15215744-15215500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:238-395
               
               
               Cow position:chr9:13761043-13761200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-410
               
               
               Cow position:chr9:45171279-45171106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:238-459
               
               
               Cow position:chr9:4858479-4858704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:238-463
               
               
               Cow position:chr9:3774109-3774330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:238-464
               
               
               Cow position:chr9:29824974-29825203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 47

               
               
               Conread position:238-465
               
               
               Cow position:chr9:11313566-11313342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:238-465
               
               
               Cow position:chr9:39577683-39577905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):186, 27

               
               
               Conread position:238-465
               
               
               Cow position:chr9:49416931-49417155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-466
               
               
               Cow position:chr9:26477160-26477385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-466
               
               
               Cow position:chr9:44108889-44108662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:238-466
               
               
               Cow position:chr9:64559938-64559715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:238-467
               
               
               Cow position:chr9:24997573-24997351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:238-469
               
               
               Cow position:chr9:30402481-30402249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-471
               
               
               Cow position:chr9:5500797-5501031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:238-471
               
               
               Cow position:chr9:7409707-7409956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):66, 234

               
               
               Conread position:238-471
               
               
               Cow position:chr9:8998293-8998530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 222

               
               
               Conread position:238-471
               
               
               Cow position:chr9:36490957-36490718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:238-471
               
               
               Cow position:chr9:44467395-44467179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:238-471
               
               
               Cow position:chr9:44915153-44914914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 145

               
               
               Conread position:238-472
               
               
               Cow position:chr9:42478538-42478292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:238-475
               
               
               Cow position:chr9:11201534-11201768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-475
               
               
               Cow position:chr9:51620389-51620619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):186, 59

               
               
               Conread position:238-475
               
               
               Cow position:chr9:62656747-62656979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:238-477
               
               
               Cow position:chr9:4646381-4646147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:239-454
               
               
               Cow position:chr9:11304130-11303920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:239-475
               
               
               Cow position:chr9:21888115-21888352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:240-454
               
               
               Cow position:chr9:5836095-5836317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:241-474
               
               
               Cow position:chr9:22114688-22114456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 88

               
               
               Conread position:243-474
               
               
               Cow position:chr9:35904796-35904569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:247-439
               
               
               Cow position:chr9:60080855-60081048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:247-443
               
               
               Cow position:chr9:6089042-6089238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:247-465
               
               
               Cow position:chr9:47591028-47590811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:247-471
               
               
               Cow position:chr9:1972901-1973116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 42

               
               
               Conread position:248-443
               
               
               Cow position:chr9:21030262-21030455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-443
               
               
               Cow position:chr9:44834009-44833820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-460
               
               
               Cow position:chr9:1756191-1755979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:249-477
               
               
               Cow position:chr9:52638212-52637975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:250-438
               
               
               Cow position:chr9:8306810-8306993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:250-454
               
               
               Cow position:chr9:53211535-53211336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:250-466
               
               
               Cow position:chr9:8534734-8534516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:250-470
               
               
               Cow position:chr9:11299724-11299518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:250-471
               
               
               Cow position:chr9:17928713-17928933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:250-471
               
               
               Cow position:chr9:49293187-49292970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:250-477
               
               
               Cow position:chr9:38615006-38614779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:251-460
               
               
               Cow position:chr9:11068514-11068308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:251-471
               
               
               Cow position:chr9:62442247-62442464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:253-466
               
               
               Cow position:chr9:54611278-54611066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 70

               
               
               Conread position:254-466
               
               
               Cow position:chr9:50202533-50202738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:254-477
               
               
               Cow position:chr9:31640365-31640137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:256-464
               
               
               Cow position:chr9:8950866-8951071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:259-459
               
               
               Cow position:chr9:26440847-26440638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 206

               
               
               Conread position:259-475
               
               
               Cow position:chr9:5141037-5141263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:262-409
               
               
               Cow position:chr9:35591979-35592125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:263-471
               
               
               Cow position:chr9:35849873-35850073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:264-457
               
               
               Cow position:chr9:43013692-43013885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:264-466
               
               
               Cow position:chr9:47875990-47875789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:264-471
               
               
               Cow position:chr9:38343860-38344064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:264-476
               
               
               Cow position:chr9:41957776-41957983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:266-477
               
               
               Cow position:chr9:6225482-6225271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:267-475
               
               
               Cow position:chr9:35533980-35533772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:268-466
               
               
               Cow position:chr9:44921419-44921222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:270-471
               
               
               Cow position:chr9:1952294-1952095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:279-466
               
               
               Cow position:chr9:54437249-54437430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:282-465
               
               
               Cow position:chr9:33038473-33038294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 58

               
               
               Conread position:285-466
               
               
               Cow position:chr9:5531937-5532118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:287-471
               
               
               Cow position:chr9:32710922-32711104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:289-462
               
               
               Cow position:chr9:31270774-31270944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:291-471
               
               
               Cow position:chr9:31638641-31638467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):133, 10

               
               
               Conread position:302-465
               
               
               Cow position:chr9:22228068-22227915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:305-471
               
               
               Cow position:chr9:34000606-34000446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:307-477
               
               
               Cow position:chr9:1712462-1712297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:308-467
               
               
               Cow position:chr9:29035021-29034862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:309-471
               
               
               Cow position:chr9:40603961-40604122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:310-466
               
               
               Cow position:chr9:50667440-50667593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:310-471
               
               
               Cow position:chr9:18002935-18002775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:315-466
               
               
               Cow position:chr9:11198319-11198174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:319-477
               
               
               Cow position:chr9:51004922-51005073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:333-477
               
               
               Cow position:chr9:16218610-16218469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:337-464
               
               
               Cow position:chr9:42998428-42998300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:337-471
               
               
               Cow position:chr9:49279507-49279648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:337-477
               
               
               Cow position:chr9:38581015-38581153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:348-466
               
               
               Cow position:chr9:4324107-4323989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:351-465
               
               
               Cow position:chr9:8524887-8525004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:354-471
               
               
               Cow position:chr9:32812401-32812518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:354-471
               
               
               Cow position:chr9:41995766-41995884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:139-459
               
               
               Cow position:chrX:24259358-24259688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 215

               
               
               Conread position:145-315
               
               
               Cow position:chrX:6677045-6676860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:145-475
               
               
               Cow position:chrX:19879254-19878923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:146-413
               
               
               Cow position:chrX:39353007-39352720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 153

               
               
               Conread position:146-467
               
               
               Cow position:chrX:23667331-23667007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:149-420
               
               
               Cow position:chrX:6203754-6203478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 196

               
               
               Conread position:149-475
               
               
               Cow position:chrX:37575049-37574729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 199

               
               
               Conread position:154-475
               
               
               Cow position:chrX:17542168-17541840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:155-448
               
               
               Cow position:chrX:19678069-19678363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 147

               
               
               Conread position:155-466
               
               
               Cow position:chrX:25338390-25338070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:155-470
               
               
               Cow position:chrX:20377169-20376848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:155-470
               
               
               Cow position:chrX:39545785-39546090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:155-471
               
               
               Cow position:chrX:8925907-8925583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:155-471
               
               
               Cow position:chrX:10411796-10412103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:155-471
               
               
               Cow position:chrX:31442613-31442940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):64, 202

               
               
               Conread position:155-475
               
               
               Cow position:chrX:11072993-11073315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:155-477
               
               
               Cow position:chrX:38964324-38963981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 198

               
               
               Conread position:156-453
               
               
               Cow position:chrX:157593-157876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):162, 50

               
               
               Conread position:162-412
               
               
               Cow position:chrX:23414177-23414431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:162-442
               
               
               Cow position:chrX:27771379-27771662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:162-465
               
               
               Cow position:chrX:8918032-8917740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:162-466
               
               
               Cow position:chrX:11747029-11746731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:163-399
               
               
               Cow position:chrX:43014442-43014686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:163-415
               
               
               Cow position:chrX:4152826-4153097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:163-440
               
               
               Cow position:chrX:20881743-20882025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 125

               
               
               Conread position:163-461
               
               
               Cow position:chrX:11856620-11856320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:163-461
               
               
               Cow position:chrX:20791622-20791926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:163-464
               
               
               Cow position:chrX:23939856-23940136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):89, 60

               
               
               Conread position:163-465
               
               
               Cow position:chrX:5637961-5638277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:163-465
               
               
               Cow position:chrX:19930841-19930543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:163-466
               
               
               Cow position:chrX:917181-917477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 173

               
               
               Conread position:163-466
               
               
               Cow position:chrX:1503525-1503225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:163-466
               
               
               Cow position:chrX:10302535-10302225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:163-466
               
               
               Cow position:chrX:39415172-39415480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:163-466
               
               
               Cow position:chrX:42011479-42011170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:163-469
               
               
               Cow position:chrX:17662403-17662709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):61, 134

               
               
               Conread position:163-471
               
               
               Cow position:chrX:4825630-4825943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 189

               
               
               Conread position:163-471
               
               
               Cow position:chrX:7646454-7646138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:163-471
               
               
               Cow position:chrX:22624678-22624366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:163-471
               
               
               Cow position:chrX:40692554-40692869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:163-473
               
               
               Cow position:chrX:32431817-32431502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:163-473
               
               
               Cow position:chrX:39558165-39558472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:163-475
               
               
               Cow position:chrX:23497479-23497792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:163-475
               
               
               Cow position:chrX:30420749-30421056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 160

               
               
               Conread position:163-477
               
               
               Cow position:chrX:755161-754833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:163-477
               
               
               Cow position:chrX:38936869-38936575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):134, 49

               
               
               Conread position:164-346
               
               
               Cow position:chrX:38722314-38722125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:164-405
               
               
               Cow position:chrX:43426487-43426240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:164-461
               
               
               Cow position:chrX:15329839-15329542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 185

               
               
               Conread position:164-464
               
               
               Cow position:chrX:16514078-16514374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:164-464
               
               
               Cow position:chrX:40789400-40789097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:164-465
               
               
               Cow position:chrX:29121238-29120934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 181

               
               
               Conread position:164-471
               
               
               Cow position:chrX:6234268-6234571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:164-471
               
               
               Cow position:chrX:20584529-20584206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:164-475
               
               
               Cow position:chrX:14973540-14973863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 161

               
               
               Conread position:164-475
               
               
               Cow position:chrX:25713992-25713670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:165-405
               
               
               Cow position:chrX:29407828-29408077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:165-435
               
               
               Cow position:chrX:15233072-15233347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:165-440
               
               
               Cow position:chrX:2468065-2467798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):145, 50

               
               
               Conread position:165-467
               
               
               Cow position:chrX:43779649-43779961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 196

               
               
               Conread position:165-467
               
               
               Cow position:chrX:46072614-46072934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 184

               
               
               Conread position:165-471
               
               
               Cow position:chrX:1615842-1616162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:165-473
               
               
               Cow position:chrX:29761488-29761809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 188

               
               
               Conread position:166-401
               
               
               Cow position:chrX:13359253-13359467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):143, 41

               
               
               Conread position:166-460
               
               
               Cow position:chrX:10959201-10959504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 181

               
               
               Conread position:166-475
               
               
               Cow position:chrX:28930030-28929713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:167-423
               
               
               Cow position:chrX:2003690-2003946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:167-465
               
               
               Cow position:chrX:37119789-37119483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:169-465
               
               
               Cow position:chrX:31340902-31340596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:169-466
               
               
               Cow position:chrX:39126515-39126220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:169-471
               
               
               Cow position:chrX:1499866-1499547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:170-392
               
               
               Cow position:chrX:35759745-35759978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 176

               
               
               Conread position:170-469
               
               
               Cow position:chrX:33855037-33855349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:172-430
               
               
               Cow position:chrX:4515872-4515606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:175-451
               
               
               Cow position:chrX:45968327-45968061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:175-465
               
               
               Cow position:chrX:12249996-12249691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 221

               
               
               Conread position:183-475
               
               
               Cow position:chrX:13853802-13853500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:184-398
               
               
               Cow position:chrX:7806601-7806378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:187-454
               
               
               Cow position:chrX:20801937-20801673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:187-466
               
               
               Cow position:chrX:17630627-17630916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:187-474
               
               
               Cow position:chrX:30163168-30162870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:190-471
               
               
               Cow position:chrX:7497409-7497125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:196-403
               
               
               Cow position:chrX:42498899-42499099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:197-475
               
               
               Cow position:chrX:18694778-18695047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:198-475
               
               
               Cow position:chrX:44961902-44961624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:200-466
               
               
               Cow position:chrX:38654282-38654543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:200-471
               
               
               Cow position:chrX:31294422-31294675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 132

               
               
               Conread position:205-465
               
               
               Cow position:chrX:26493490-26493749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:207-439
               
               
               Cow position:chrX:6559305-6559532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:208-464
               
               
               Cow position:chrX:29194372-29194123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:208-471
               
               
               Cow position:chrX:4865382-4865127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:209-464
               
               
               Cow position:chrX:43568059-43567811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:209-475
               
               
               Cow position:chrX:34315662-34315403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 133

               
               
               Conread position:210-432
               
               
               Cow position:chrX:39220219-39220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:210-440
               
               
               Cow position:chrX:47054385-47054615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:212-388
               
               
               Cow position:chrX:17956828-17956660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 63

               
               
               Conread position:212-464
               
               
               Cow position:chrX:8797387-8797141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):157, 89

               
               
               Conread position:212-466
               
               
               Cow position:chrX:42994737-42994503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:212-471
               
               
               Cow position:chrX:42171159-42171414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:212-473
               
               
               Cow position:chrX:5679793-5680055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:213-384
               
               
               Cow position:chrX:23498543-23498709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:213-395
               
               
               Cow position:chrX:29553422-29553243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-402
               
               
               Cow position:chrX:19943099-19943286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:213-405
               
               
               Cow position:chrX:18964692-18964876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-406
               
               
               Cow position:chrX:20887503-20887698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-410
               
               
               Cow position:chrX:31626841-31627038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:213-411
               
               
               Cow position:chrX:22914905-22915094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:213-413
               
               
               Cow position:chrX:27511565-27511367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-415
               
               
               Cow position:chrX:19097082-19097284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:213-416
               
               
               Cow position:chrX:126904-126706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 92

               
               
               Conread position:213-416
               
               
               Cow position:chrX:6463735-6463548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:213-416
               
               
               Cow position:chrX:25037124-25036924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:213-437
               
               
               Cow position:chrX:41238218-41238436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:213-438
               
               
               Cow position:chrX:23562769-23562549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-439
               
               
               Cow position:chrX:36514755-36514981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:213-440
               
               
               Cow position:chrX:9252026-9252250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:213-440
               
               
               Cow position:chrX:40680751-40680523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:213-443
               
               
               Cow position:chrX:27261329-27261097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-443
               
               
               Cow position:chrX:27705723-27705496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-443
               
               
               Cow position:chrX:29050385-29050156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:213-443
               
               
               Cow position:chrX:42873522-42873303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:213-444
               
               
               Cow position:chrX:1466299-1466069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:213-444
               
               
               Cow position:chrX:37129406-37129177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-445
               
               
               Cow position:chrX:31250525-31250293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-446
               
               
               Cow position:chrX:20168694-20168464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:213-448
               
               
               Cow position:chrX:29549414-29549644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:213-454
               
               
               Cow position:chrX:16348435-16348672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:213-454
               
               
               Cow position:chrX:34411983-34411740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:213-459
               
               
               Cow position:chrX:169409-169646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-463
               
               
               Cow position:chrX:42855595-42855344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:213-464
               
               
               Cow position:chrX:11614830-11614588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-464
               
               
               Cow position:chrX:45502283-45502041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-465
               
               
               Cow position:chrX:6278361-6278614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-465
               
               
               Cow position:chrX:9416547-9416805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-465
               
               
               Cow position:chrX:15147060-15147301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:213-465
               
               
               Cow position:chrX:32420349-32420107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 116

               
               
               Conread position:213-465
               
               
               Cow position:chrX:42235387-42235640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-466
               
               
               Cow position:chrX:9201685-9201437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:213-466
               
               
               Cow position:chrX:11717646-11717897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:213-466
               
               
               Cow position:chrX:20697472-20697719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chrX:27175135-27174882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-466
               
               
               Cow position:chrX:29601691-29601943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-466
               
               
               Cow position:chrX:33466761-33466498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-466
               
               
               Cow position:chrX:33640112-33639858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:213-466
               
               
               Cow position:chrX:34565420-34565170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-466
               
               
               Cow position:chrX:34792176-34792421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-466
               
               
               Cow position:chrX:35885590-35885843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:213-466
               
               
               Cow position:chrX:41027296-41027044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:213-467
               
               
               Cow position:chrX:17888286-17888528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:213-467
               
               
               Cow position:chrX:31489657-31489407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-467
               
               
               Cow position:chrX:41123196-41122953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:213-469
               
               
               Cow position:chrX:5872454-5872201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chrX:5679435-5679684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:213-471
               
               
               Cow position:chrX:9365539-9365793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:213-471
               
               
               Cow position:chrX:11084928-11085175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:213-471
               
               
               Cow position:chrX:12309249-12309503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-471
               
               
               Cow position:chrX:12979697-12979945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:213-471
               
               
               Cow position:chrX:13647648-13647903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chrX:14599669-14599415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:213-471
               
               
               Cow position:chrX:17726113-17725856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:213-471
               
               
               Cow position:chrX:18204326-18204581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-471
               
               
               Cow position:chrX:22387113-22387361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-471
               
               
               Cow position:chrX:27228264-27228005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:213-471
               
               
               Cow position:chrX:27771831-27772079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:213-471
               
               
               Cow position:chrX:29680124-29680378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-471
               
               
               Cow position:chrX:30543147-30543405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:213-471
               
               
               Cow position:chrX:31252544-31252300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):204, 46

               
               
               Conread position:213-471
               
               
               Cow position:chrX:31312166-31311911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:213-471
               
               
               Cow position:chrX:32821165-32820910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:213-471
               
               
               Cow position:chrX:34238858-34238602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:213-471
               
               
               Cow position:chrX:34402143-34401880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:213-471
               
               
               Cow position:chrX:34503057-34502804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-471
               
               
               Cow position:chrX:35543024-35542777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:213-471
               
               
               Cow position:chrX:36356242-36355997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:213-471
               
               
               Cow position:chrX:36976088-36975831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:213-471
               
               
               Cow position:chrX:37489855-37489608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:213-471
               
               
               Cow position:chrX:37780972-37781229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):89, 96

               
               
               Conread position:213-471
               
               
               Cow position:chrX:38006634-38006882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:213-471
               
               
               Cow position:chrX:38094383-38094641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:213-471
               
               
               Cow position:chrX:38549584-38549334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):100, 125

               
               
               Conread position:213-471
               
               
               Cow position:chrX:38728871-38728619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:213-471
               
               
               Cow position:chrX:40685191-40685449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:213-471
               
               
               Cow position:chrX:42492387-42492633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:213-471
               
               
               Cow position:chrX:46433628-46433368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-472
               
               
               Cow position:chrX:13382462-13382210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:213-472
               
               
               Cow position:chrX:27393889-27394138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:213-473
               
               
               Cow position:chrX:45113758-45113495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-474
               
               
               Cow position:chrX:6690123-6690379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:213-475
               
               
               Cow position:chrX:878243-878502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:213-475
               
               
               Cow position:chrX:5017285-5017541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):211, 37

               
               
               Conread position:213-475
               
               
               Cow position:chrX:33001043-33000780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:213-475
               
               
               Cow position:chrX:37910581-37910324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:213-475
               
               
               Cow position:chrX:40035303-40035567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:213-475
               
               
               Cow position:chrX:42247045-42247307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:213-477
               
               
               Cow position:chrX:152037-151775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:213-477
               
               
               Cow position:chrX:6407680-6407423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:213-477
               
               
               Cow position:chrX:8869264-8869527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:213-477
               
               
               Cow position:chrX:11633819-11633553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:214-409
               
               
               Cow position:chrX:32977950-32978133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:214-465
               
               
               Cow position:chrX:11082486-11082726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:214-466
               
               
               Cow position:chrX:7351433-7351186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:214-471
               
               
               Cow position:chrX:7695884-7695630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:214-475
               
               
               Cow position:chrX:41068861-41068599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:215-471
               
               
               Cow position:chrX:6488709-6488458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:215-471
               
               
               Cow position:chrX:15007015-15007268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:215-477
               
               
               Cow position:chrX:9635056-9635306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):94, 75

               
               
               Conread position:215-477
               
               
               Cow position:chrX:38218851-38218586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:216-460
               
               
               Cow position:chrX:43730090-43730325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 117

               
               
               Conread position:216-465
               
               
               Cow position:chrX:44054936-44054690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:216-466
               
               
               Cow position:chrX:7710405-7710656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:216-466
               
               
               Cow position:chrX:20151990-20151733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:217-454
               
               
               Cow position:chrX:45875524-45875289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:218-465
               
               
               Cow position:chrX:6656514-6656274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:218-471
               
               
               Cow position:chrX:19003420-19003182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:218-475
               
               
               Cow position:chrX:618866-619131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):7, 133

               
               
               Conread position:218-477
               
               
               Cow position:chrX:34222856-34222584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:219-409
               
               
               Cow position:chrX:32623700-32623511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-440
               
               
               Cow position:chrX:11454919-11455134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:219-446
               
               
               Cow position:chrX:23113415-23113181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-451
               
               
               Cow position:chrX:31515304-31515070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:219-461
               
               
               Cow position:chrX:7278041-7277811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:219-466
               
               
               Cow position:chrX:33539300-33539052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:219-466
               
               
               Cow position:chrX:48236947-48236704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):135, 9

               
               
               Conread position:219-471
               
               
               Cow position:chrX:31729572-31729325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:219-477
               
               
               Cow position:chrX:35288785-35288529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:220-443
               
               
               Cow position:chrX:28134467-28134254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:220-464
               
               
               Cow position:chrX:47186197-47186432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 25

               
               
               Conread position:220-466
               
               
               Cow position:chrX:26881436-26881681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:220-471
               
               
               Cow position:chrX:1175850-1176097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:220-471
               
               
               Cow position:chrX:24287803-24288042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:221-420
               
               
               Cow position:chrX:23561986-23561794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:221-465
               
               
               Cow position:chrX:7572033-7571792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:221-466
               
               
               Cow position:chrX:16416638-16416397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:221-466
               
               
               Cow position:chrX:22074928-22074687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:221-466
               
               
               Cow position:chrX:44397137-44396906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):204, 7

               
               
               Conread position:221-466
               
               
               Cow position:chrX:45977055-45976807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 141

               
               
               Conread position:221-467
               
               
               Cow position:chrX:42469813-42470055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:221-470
               
               
               Cow position:chrX:35413739-35413503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):147, 74

               
               
               Conread position:221-471
               
               
               Cow position:chrX:616131-616380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-471
               
               
               Cow position:chrX:1514291-1514525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:221-471
               
               
               Cow position:chrX:19690343-19690103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:221-471
               
               
               Cow position:chrX:27431790-27432032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-471
               
               
               Cow position:chrX:38853325-38853080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:221-471
               
               
               Cow position:chrX:41674233-41673990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):88, 98

               
               
               Conread position:221-473
               
               
               Cow position:chrX:4768860-4768624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-475
               
               
               Cow position:chrX:34314152-34313906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:221-475
               
               
               Cow position:chrX:36068143-36067890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-475
               
               
               Cow position:chrX:40557551-40557808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-477
               
               
               Cow position:chrX:41270858-41271116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chrX:41884284-41884543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:221-477
               
               
               Cow position:chrX:45670350-45670101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:221-477
               
               
               Cow position:chrX:46587950-46587690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:228-420
               
               
               Cow position:chrX:15820716-15820530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:228-466
               
               
               Cow position:chrX:32310228-32309996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:228-471
               
               
               Cow position:chrX:7162178-7161942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:228-471
               
               
               Cow position:chrX:29542095-29542337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:228-471
               
               
               Cow position:chrX:41871189-41870955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:229-443
               
               
               Cow position:chrX:43527629-43527419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:229-444
               
               
               Cow position:chrX:161533-161321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:229-456
               
               
               Cow position:chrX:19162220-19162444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:229-475
               
               
               Cow position:chrX:4043746-4043974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:230-448
               
               
               Cow position:chrX:12095652-12095870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:230-465
               
               
               Cow position:chrX:40480746-40480981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:230-466
               
               
               Cow position:chrX:27516639-27516415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:230-470
               
               
               Cow position:chrX:45598485-45598717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:231-454
               
               
               Cow position:chrX:47967726-47967496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:237-466
               
               
               Cow position:chrX:37955960-37955720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 179

               
               
               Conread position:237-470
               
               
               Cow position:chrX:41878821-41879049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 72

               
               
               Conread position:238-410
               
               
               Cow position:chrX:40108406-40108573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:238-444
               
               
               Cow position:chrX:46532383-46532592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:238-452
               
               
               Cow position:chrX:48044403-48044614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:238-453
               
               
               Cow position:chrX:45403713-45403931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:238-454
               
               
               Cow position:chrX:48570876-48571097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:238-464
               
               
               Cow position:chrX:44656845-44657074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:238-465
               
               
               Cow position:chrX:30133206-30133434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:238-466
               
               
               Cow position:chrX:3154131-3154357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-466
               
               
               Cow position:chrX:9650912-9651138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:238-466
               
               
               Cow position:chrX:20339782-20340001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:238-466
               
               
               Cow position:chrX:21566519-21566289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:238-471
               
               
               Cow position:chrX:5118386-5118620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:238-471
               
               
               Cow position:chrX:7722100-7721871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:238-471
               
               
               Cow position:chrX:23513905-23514133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:238-471
               
               
               Cow position:chrX:34543896-34543668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:238-475
               
               
               Cow position:chrX:2786445-2786676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:239-456
               
               
               Cow position:chrX:10516364-10516152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:239-471
               
               
               Cow position:chrX:37836689-37836470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:240-464
               
               
               Cow position:chrX:34441344-34441563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:240-465
               
               
               Cow position:chrX:26625561-26625782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:240-471
               
               
               Cow position:chrX:31260504-31260744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:240-475
               
               
               Cow position:chrX:29032520-29032285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:240-477
               
               
               Cow position:chrX:8731203-8730962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:241-477
               
               
               Cow position:chrX:3488782-3489018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):183, 96

               
               
               Conread position:243-466
               
               
               Cow position:chrX:21672667-21672442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:243-470
               
               
               Cow position:chrX:45846208-45845982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:243-471
               
               
               Cow position:chrX:13913182-13912961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 158

               
               
               Conread position:243-472
               
               
               Cow position:chrX:40269599-40269369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:243-474
               
               
               Cow position:chrX:35224403-35224177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:244-465
               
               
               Cow position:chrX:27680504-27680287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:247-431
               
               
               Cow position:chrX:36866276-36866092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:247-441
               
               
               Cow position:chrX:13868805-13868615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:247-452
               
               
               Cow position:chrX:25440895-25441091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:247-459
               
               
               Cow position:chrX:1055278-1055499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:247-465
               
               
               Cow position:chrX:31436577-31436366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:247-466
               
               
               Cow position:chrX:29289681-29289467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:247-471
               
               
               Cow position:chrX:45633659-45633446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:247-475
               
               
               Cow position:chrX:35926059-35925836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:248-459
               
               
               Cow position:chrX:36061262-36061049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:248-460
               
               
               Cow position:chrX:40826649-40826862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:248-471
               
               
               Cow position:chrX:14900631-14900840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 58

               
               
               Conread position:248-471
               
               
               Cow position:chrX:40320508-40320287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:248-472
               
               
               Cow position:chrX:22921423-22921197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:249-466
               
               
               Cow position:chrX:27685350-27685134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:250-453
               
               
               Cow position:chrX:21328013-21327802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:250-459
               
               
               Cow position:chrX:22813162-22812958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):170, 53

               
               
               Conread position:250-460
               
               
               Cow position:chrX:23563691-23563900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:250-471
               
               
               Cow position:chrX:16541557-16541792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 220

               
               
               Conread position:250-471
               
               
               Cow position:chrX:21593381-21593169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:250-471
               
               
               Cow position:chrX:25815801-25816018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:250-475
               
               
               Cow position:chrX:45993330-45993096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:250-477
               
               
               Cow position:chrX:21642382-21642603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:252-466
               
               
               Cow position:chrX:6265501-6265710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:252-471
               
               
               Cow position:chrX:15815182-15814969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:252-471
               
               
               Cow position:chrX:26440687-26440897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:254-471
               
               
               Cow position:chrX:3654704-3654490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:256-477
               
               
               Cow position:chrX:24365727-24365952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:259-459
               
               
               Cow position:chrX:17231826-17231625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:259-464
               
               
               Cow position:chrX:17949402-17949601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:259-472
               
               
               Cow position:chrX:11844150-11844366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 147

               
               
               Conread position:259-473
               
               
               Cow position:chrX:34662755-34662970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:264-465
               
               
               Cow position:chrX:44873475-44873673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:264-471
               
               
               Cow position:chrX:10831401-10831611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:264-471
               
               
               Cow position:chrX:12405295-12405505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:264-471
               
               
               Cow position:chrX:27945968-27946177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:265-418
               
               
               Cow position:chrX:43973630-43973479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:265-475
               
               
               Cow position:chrX:4399211-4399002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:265-475
               
               
               Cow position:chrX:13265542-13265747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:266-471
               
               
               Cow position:chrX:20710158-20709957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:267-471
               
               
               Cow position:chrX:13785280-13785481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:269-475
               
               
               Cow position:chrX:22466037-22465826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 166

               
               
               Conread position:271-466
               
               
               Cow position:chrX:11589509-11589701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:271-466
               
               
               Cow position:chrX:27449919-27450112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:277-471
               
               
               Cow position:chrX:41743987-41743793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:279-475
               
               
               Cow position:chrX:1810089-1810286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:280-467
               
               
               Cow position:chrX:20790983-20790807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:281-471
               
               
               Cow position:chrX:26875812-26876001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:283-465
               
               
               Cow position:chrX:40116484-40116309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:285-465
               
               
               Cow position:chrX:42461681-42461856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:285-475
               
               
               Cow position:chrX:19188996-19188813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:286-466
               
               
               Cow position:chrX:12018356-12018175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:287-461
               
               
               Cow position:chrX:25232656-25232482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:289-466
               
               
               Cow position:chrX:36961702-36961526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:290-466
               
               
               Cow position:chrX:41166902-41167078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:297-471
               
               
               Cow position:chrX:35681393-35681220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:297-475
               
               
               Cow position:chrX:28845884-28845708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:298-466
               
               
               Cow position:chrX:42875035-42874868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:308-471
               
               
               Cow position:chrX:40648027-40647869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:308-475
               
               
               Cow position:chrX:28835861-28836025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:308-477
               
               
               Cow position:chrX:17498126-17497961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:310-460
               
               
               Cow position:chrX:35848601-35848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:312-454
               
               
               Cow position:chrX:38439518-38439376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:315-475
               
               
               Cow position:chrX:17908256-17908408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:318-445
               
               
               Cow position:chrX:22376683-22376560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:330-471
               
               
               Cow position:chrX:35284644-35284501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:337-464
               
               
               Cow position:chrX:10079434-10079560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:344-471
               
               
               Cow position:chrX:37048565-37048694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:353-475
               
               
               Cow position:chrX:30832850-30832969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 5

               
               
               Conread position:364-466
               
               
               Cow position:chrX:32747673-32747570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 93
Conread position:	132-389
Cow position:	chr1:64218220-64218485 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	191
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	32, 167
Conread position:	139-466
Cow position:	chr1:63504536-63504205 (view UCSC Genome Browser custom track)
Alignm length:	343
Alignm identity:	235
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	28, 148
Conread position:	144-465
Cow position:	chr1:70533742-70534066 (view UCSC Genome Browser custom track)
Alignm length:	336
Alignm identity:	234
Alignm E-value:	6e-35
Alignm gaps (pig, cow):	15, 75
Conread position:	146-466
Cow position:	chr1:93110420-93110755 (view UCSC Genome Browser custom track)
Alignm length:	340
Alignm identity:	238
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	73, 210
Conread position:	146-475
Cow position:	chr1:78791115-78791451 (view UCSC Genome Browser custom track)
Alignm length:	345
Alignm identity:	238
Alignm E-value:	6e-35
Alignm gaps (pig, cow):	76, 72
Conread position:	147-471
Cow position:	chr1:20000542-20000889 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	259
Alignm E-value:	0
Alignm gaps (pig, cow):	14, 214
Conread position:	151-464
Cow position:	chr1:21933994-21934307 (view UCSC Genome Browser custom track)
Alignm length:	323
Alignm identity:	222
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	12, 92
Conread position:	153-302
Cow position:	chr1:83926576-83926414 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	123
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	7, 0
Conread position:	153-445
Cow position:	chr1:81582303-81582008 (view UCSC Genome Browser custom track)
Alignm length:	312
Alignm identity:	224
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	11, 198
Conread position:	155-366
Cow position:	chr1:12430088-12430298 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	155
Alignm E-value:	7e-26
Alignm gaps (pig, cow):	33, 89
Conread position:	155-417
Cow position:	chr1:15028940-15028665 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	188
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	51, 200
Conread position:	155-418
Cow position:	chr1:30066805-30066532 (view UCSC Genome Browser custom track)
Alignm length:	280
Alignm identity:	191
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	71, 63
Conread position:	155-443
Cow position:	chr1:60509281-60509567 (view UCSC Genome Browser custom track)
Alignm length:	297
Alignm identity:	206
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	64, 95
Conread position:	155-461
Cow position:	chr1:85141551-85141860 (view UCSC Genome Browser custom track)
Alignm length:	323
Alignm identity:	227
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	72, 63
Conread position:	155-464
Cow position:	chr1:44747044-44746734 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	223
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	73, 189
Conread position:	155-465
Cow position:	chr1:8869492-8869792 (view UCSC Genome Browser custom track)
Alignm length:	316
Alignm identity:	213
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	72, 85
Conread position:	155-466
Cow position:	chr1:70435190-70434870 (view UCSC Genome Browser custom track)
Alignm length:	333
Alignm identity:	239
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	10, 199
Conread position:	155-467
Cow position:	chr1:85029140-85028824 (view UCSC Genome Browser custom track)
Alignm length:	329
Alignm identity:	226
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	9, 197
Conread position:	155-470
Cow position:	chr1:26688288-26688612 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	222
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	73, 184
Conread position:	155-471
Cow position:	chr1:71136335-71136014 (view UCSC Genome Browser custom track)
Alignm length:	330
Alignm identity:	227
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	10, 35