Cow genome map
| Conread name: | Emb1-C0005186_G05 |
| Conread position: | 1-236 |
| Cow position: | chr1:76044596-76044361 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 121, 184 |
| Conread position: | 1-244 |
| Cow position: | chr1:88296972-88297207 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 1-437 |
| Cow position: | chr1:31422909-31422484 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 4-440 |
| Cow position: | chr1:99021667-99021227 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 258 |
| Conread position: | 12-438 |
| Cow position: | chr1:93415940-93416362 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 1-419 |
| Cow position: | chr10:24314497-24314088 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 1-440 |
| Cow position: | chr10:21075679-21076113 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 2-154 |
| Cow position: | chr10:24978991-24978832 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-435 |
| Cow position: | chr10:39881964-39881527 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 385 |
| Conread position: | 1-391 |
| Cow position: | chr11:44230064-44230458 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 87 |
| Conread position: | 1-440 |
| Cow position: | chr11:10218609-10218165 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 386 |
| Conread position: | 11-440 |
| Cow position: | chr11:36761049-36761483 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 305 |
| Conread position: | 13-428 |
| Cow position: | chr11:9416680-9416263 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 319 |
| Conread position: | 31-389 |
| Cow position: | chr11:13068853-13068497 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 31-389 |
| Cow position: | chr11:13161144-13161500 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 64-440 |
| Cow position: | chr11:38006313-38005930 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 1-440 |
| Cow position: | chr12:17974799-17975221 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 1-438 |
| Cow position: | chr13:30261267-30261702 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 211 |
| Conread position: | 20-435 |
| Cow position: | chr13:21130324-21130742 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 274 |
| Conread position: | 34-440 |
| Cow position: | chr13:22186662-22186261 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 77 |
| Conread position: | 41-439 |
| Cow position: | chr13:34047699-34048101 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 250 |
| Conread position: | 13-440 |
| Cow position: | chr14:39723247-39722835 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 46 |
| Conread position: | 72-438 |
| Cow position: | chr14:30707717-30707344 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 12-437 |
| Cow position: | chr15:32671552-32672000 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 12-440 |
| Cow position: | chr15:32286192-32286609 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 36-258 |
| Cow position: | chr15:20358570-20358338 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-167 |
| Cow position: | chr16:20235227-20235397 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 1-428 |
| Cow position: | chr16:24155874-24155453 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 1-433 |
| Cow position: | chr16:14668841-14669271 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 181 |
| Conread position: | 12-275 |
| Cow position: | chr16:41759504-41759223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 13-375 |
| Cow position: | chr16:25292919-25293281 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 280 |
| Conread position: | 34-285 |
| Cow position: | chr16:16819036-16818776 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 23, 206 |
| Conread position: | 34-416 |
| Cow position: | chr16:23872954-23872591 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 299, 50 |
| Conread position: | 35-437 |
| Cow position: | chr16:28439190-28438789 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 30-183 |
| Cow position: | chr17:13894420-13894262 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 28-438 |
| Cow position: | chr18:46878604-46878204 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-440 |
| Cow position: | chr19:7406085-7405657 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 14-438 |
| Cow position: | chr19:20111878-20111453 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 249 |
| Conread position: | 28-435 |
| Cow position: | chr19:7450635-7450229 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 140 |
| Conread position: | 28-440 |
| Cow position: | chr19:42300159-42299747 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 150 |
| Conread position: | 1-250 |
| Cow position: | chr2:15581334-15581082 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 1-304 |
| Cow position: | chr2:45924147-45923836 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 1-440 |
| Cow position: | chr2:45969675-45969252 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 53-354 |
| Cow position: | chr2:4275145-4274837 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 245 |
| Conread position: | 12-440 |
| Cow position: | chr20:18328974-18328553 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 30-440 |
| Cow position: | chr20:19367979-19367554 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 202 |
| Conread position: | 12-440 |
| Cow position: | chr21:993603-993174 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 33-203 |
| Cow position: | chr21:25973682-25973512 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 47-400 |
| Cow position: | chr21:34002840-34002480 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 48-250 |
| Cow position: | chr21:3193482-3193691 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 173 |
| Conread position: | 1-305 |
| Cow position: | chr22:36593090-36592780 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 220 |
| Conread position: | 1-440 |
| Cow position: | chr22:293912-293480 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 88 |
| Conread position: | 2-310 |
| Cow position: | chr22:299300-298986 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 2-440 |
| Cow position: | chr22:35944157-35943717 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 26 |
| Conread position: | 3-311 |
| Cow position: | chr22:12562958-12562638 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 34-440 |
| Cow position: | chr22:10964460-10964859 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 229 |
| Conread position: | 1-299 |
| Cow position: | chr23:6213976-6214278 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 1-394 |
| Cow position: | chr23:1322600-1322198 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 3-106 |
| Cow position: | chr24:14874159-14874056 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-212 |
| Cow position: | chr26:12581907-12582110 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 53-359 |
| Cow position: | chr27:24560500-24560807 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 1-440 |
| Cow position: | chr28:8783374-8783819 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 136 |
| Conread position: | 1-440 |
| Cow position: | chr28:10592084-10591650 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 168 |
| Conread position: | 36-439 |
| Cow position: | chr28:29437821-29437418 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 119 |
| Conread position: | 1-440 |
| Cow position: | chr29:16017885-16017440 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 47-365 |
| Cow position: | chr3:37623951-37624269 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 57 |
| Conread position: | 9-440 |
| Cow position: | chr4:1497768-1497344 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 296 |
| Conread position: | 25-438 |
| Cow position: | chr4:4175443-4175855 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 208 |
| Conread position: | 34-254 |
| Cow position: | chr5:24109963-24109734 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 170 |
| Conread position: | 1-440 |
| Cow position: | chr6:59479017-59478571 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 12-440 |
| Cow position: | chr6:6541980-6542393 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 1-254 |
| Cow position: | chr7:52385980-52385719 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 1-258 |
| Cow position: | chr7:26849777-26850042 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 1-278 |
| Cow position: | chr7:53058482-53058199 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 2-440 |
| Cow position: | chr7:30299435-30299878 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 15 |
| Conread position: | 12-440 |
| Cow position: | chr7:41877170-41876743 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 31-292 |
| Cow position: | chr7:41486675-41486936 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 68, 57 |
| Conread position: | 36-439 |
| Cow position: | chr7:30120201-30119804 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 1-438 |
| Cow position: | chr8:39159792-39160237 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 1-440 |
| Cow position: | chr9:29327170-29327611 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 1-440 |
| Cow position: | chr9:59509740-59510176 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 152 |
| Conread position: | 28-411 |
| Cow position: | chr9:64158246-64158654 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 1-375 |
| Cow position: | chrX:41890327-41889953 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 34-354 |
| Cow position: | chrX:24115433-24115106 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 39-188 |
| Cow position: | chrX:29812023-29812174 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 69-396 |
| Cow position: | chrX:6251518-6251195 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 34 |