Non-Coding RNA Search

Cow genome map


           Conread name:
           Emb1-C0005217_H15
        

               Conread position:
               8-608
               

               Cow position:
               chr1:67286846-67287452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 26
               

               Conread position:
               10-173
               

               Cow position:
               chr1:55322715-55322550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               89, 24
               

               Conread position:
               16-292
               

               Cow position:
               chr1:94253267-94253549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               210
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               86, 18
               

               Conread position:
               16-578
               

               Cow position:
               chr1:40513033-40512442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 8
               

               Conread position:
               17-459
               

               Cow position:
               chr1:21720237-21720693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 17
               

               Conread position:
               39-157
               

               Cow position:
               chr1:38387341-38387226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               56-356
               

               Cow position:
               chr1:30027073-30026773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 19
               

               Conread position:
               64-344
               

               Cow position:
               chr1:34690081-34690377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               43, 177
               

               Conread position:
               98-310
               

               Cow position:
               chr1:31418436-31418216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               156-476
               

               Cow position:
               chr1:5319319-5319640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               61, 72
               

               Conread position:
               156-575
               

               Cow position:
               chr1:88270048-88269617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 75
               

               Conread position:
               164-378
               

               Cow position:
               chr1:29413971-29413747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               95, 64
               

               Conread position:
               169-552
               

               Cow position:
               chr1:22344110-22344485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 51
               

               Conread position:
               178-429
               

               Cow position:
               chr1:38387158-38386900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               81, 12
               

               Conread position:
               181-603
               

               Cow position:
               chr1:59647464-59647907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               81, 68
               

               Conread position:
               183-388
               

               Cow position:
               chr1:58179506-58179293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               104, 28
               

               Conread position:
               203-608
               

               Cow position:
               chr1:55321935-55321516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 28
               

               Conread position:
               225-433
               

               Cow position:
               chr1:86610071-86610289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               285-595
               

               Cow position:
               chr1:33551226-33551541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 6
               

               Conread position:
               287-608
               

               Cow position:
               chr1:102549538-102549859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 19
               

               Conread position:
               291-507
               

               Cow position:
               chr1:33712371-33712596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               34, 22
               

               Conread position:
               291-585
               

               Cow position:
               chr1:97226404-97226104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 15
               

               Conread position:
               305-593
               

               Cow position:
               chr1:82923860-82923565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 191
               

               Conread position:
               305-596
               

               Cow position:
               chr1:48246164-48246449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 22
               

               Conread position:
               305-607
               

               Cow position:
               chr1:8825369-8825679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 100
               

               Conread position:
               305-607
               

               Cow position:
               chr1:69922119-69921811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 282
               

               Conread position:
               306-608
               

               Cow position:
               chr1:17012425-17012114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 276
               

               Conread position:
               307-592
               

               Cow position:
               chr1:21087728-21088022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 280
               

               Conread position:
               307-592
               

               Cow position:
               chr1:85792001-85792290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 122
               

               Conread position:
               307-608
               

               Cow position:
               chr1:82652968-82653290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 292
               

               Conread position:
               317-518
               

               Cow position:
               chr1:30283218-30283008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               33, 179
               

               Conread position:
               319-607
               

               Cow position:
               chr1:52358944-52358648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 267
               

               Conread position:
               8-158
               

               Cow position:
               chr10:8339258-8339412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               44, 22
               

               Conread position:
               8-240
               

               Cow position:
               chr10:54979108-54978892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               103, 26
               

               Conread position:
               8-333
               

               Cow position:
               chr10:42628987-42629328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 26
               

               Conread position:
               10-608
               

               Cow position:
               chr10:31524164-31524749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 15
               

               Conread position:
               46-585
               

               Cow position:
               chr10:38545829-38545284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 349
               

               Conread position:
               71-363
               

               Cow position:
               chr10:33347113-33347414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 244
               

               Conread position:
               71-541
               

               Cow position:
               chr10:14861358-14861839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 47
               

               Conread position:
               98-409
               

               Cow position:
               chr10:46191845-46192155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               161, 16
               

               Conread position:
               98-539
               

               Cow position:
               chr10:28931267-28930805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 10
               

               Conread position:
               156-333
               

               Cow position:
               chr10:13364329-13364154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               103, 71
               

               Conread position:
               156-333
               

               Cow position:
               chr10:13365519-13365344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               103, 71
               

               Conread position:
               164-375
               

               Cow position:
               chr10:38527631-38527840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               187, 65
               

               Conread position:
               167-592
               

               Cow position:
               chr10:3543026-3542592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               168-512
               

               Cow position:
               chr10:38847916-38848270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               255
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               91, 22
               

               Conread position:
               178-292
               

               Cow position:
               chr10:8339505-8339617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               81, 50
               

               Conread position:
               182-608
               

               Cow position:
               chr10:26596819-26597266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 102
               

               Conread position:
               199-439
               

               Cow position:
               chr10:20370987-20370748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               276-603
               

               Cow position:
               chr10:17432946-17432614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 214
               

               Conread position:
               286-438
               

               Cow position:
               chr10:8339716-8339882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               18, 113
               

               Conread position:
               305-430
               

               Cow position:
               chr10:124653-124788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               306-539
               

               Cow position:
               chr10:54978908-54978675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 107
               

               Conread position:
               307-592
               

               Cow position:
               chr10:14804174-14804466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 95
               

               Conread position:
               307-595
               

               Cow position:
               chr10:25564920-25564626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 95
               

               Conread position:
               307-608
               

               Cow position:
               chr10:39180121-39180433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 87
               

               Conread position:
               307-608
               

               Cow position:
               chr10:55093603-55093914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 281
               

               Conread position:
               8-157
               

               Cow position:
               chr11:8283077-8283222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               52, 26
               

               Conread position:
               8-608
               

               Cow position:
               chr11:10090344-10090968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               9-171
               

               Cow position:
               chr11:30125032-30124877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               9-253
               

               Cow position:
               chr11:7316873-7317128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               86, 26
               

               Conread position:
               11-350
               

               Cow position:
               chr11:7113890-7114229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 23
               

               Conread position:
               71-435
               

               Cow position:
               chr11:39802176-39802563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               28, 65
               

               Conread position:
               125-607
               

               Cow position:
               chr11:28049413-28048919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 112
               

               Conread position:
               132-608
               

               Cow position:
               chr11:32271493-32271026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               308
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               88, 79
               

               Conread position:
               141-437
               

               Cow position:
               chr11:8261735-8261425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               22, 88
               

               Conread position:
               159-443
               

               Cow position:
               chr11:9220129-9219839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 74
               

               Conread position:
               161-585
               

               Cow position:
               chr11:28063670-28064097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 67
               

               Conread position:
               164-552
               

               Cow position:
               chr11:8283291-8283694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 64
               

               Conread position:
               175-432
               

               Cow position:
               chr11:30124577-30124301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               84, 36
               

               Conread position:
               177-585
               

               Cow position:
               chr11:52886199-52885797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               230-436
               

               Cow position:
               chr11:44495552-44495328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               234-600
               

               Cow position:
               chr11:66727274-66727655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 288
               

               Conread position:
               255-585
               

               Cow position:
               chr11:62229130-62229456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 88
               

               Conread position:
               265-432
               

               Cow position:
               chr11:30125313-30125127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               284-442
               

               Cow position:
               chr11:256224-256059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               36, 7
               

               Conread position:
               285-601
               

               Cow position:
               chr11:44157289-44156967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               291-454
               

               Cow position:
               chr11:54209581-54209751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               57, 15
               

               Conread position:
               291-592
               

               Cow position:
               chr11:12093527-12093831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 15
               

               Conread position:
               291-603
               

               Cow position:
               chr11:9157185-9156872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               291-608
               

               Cow position:
               chr11:22934770-22935082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 9
               

               Conread position:
               304-608
               

               Cow position:
               chr11:46246582-46246263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 112
               

               Conread position:
               305-585
               

               Cow position:
               chr11:76374224-76373948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               21, 69
               

               Conread position:
               305-607
               

               Cow position:
               chr11:4027582-4027275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 132
               

               Conread position:
               306-575
               

               Cow position:
               chr11:84389609-84389887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 234
               

               Conread position:
               307-592
               

               Cow position:
               chr11:15983600-15983895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 281
               

               Conread position:
               318-607
               

               Cow position:
               chr11:8245302-8245600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 269
               

               Conread position:
               14-224
               

               Cow position:
               chr12:15950975-15950759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               81, 20
               

               Conread position:
               71-251
               

               Cow position:
               chr12:48405679-48405862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               30, 162
               

               Conread position:
               285-607
               

               Cow position:
               chr12:42859576-42859250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               287-608
               

               Cow position:
               chr12:21198211-21198538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 20
               

               Conread position:
               291-585
               

               Cow position:
               chr12:14662377-14662075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               8-237
               

               Cow position:
               chr13:54284633-54284875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               63, 26
               

               Conread position:
               10-347
               

               Cow position:
               chr13:15451493-15451151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 15
               

               Conread position:
               10-585
               

               Cow position:
               chr13:26843858-26844422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 15
               

               Conread position:
               10-605
               

               Cow position:
               chr13:20542306-20541680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 24
               

               Conread position:
               43-608
               

               Cow position:
               chr13:34937280-34937839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 36
               

               Conread position:
               71-331
               

               Cow position:
               chr13:34111502-34111772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 50
               

               Conread position:
               71-440
               

               Cow position:
               chr13:34767069-34766681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 42
               

               Conread position:
               98-273
               

               Cow position:
               chr13:11064573-11064392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               98-603
               

               Cow position:
               chr13:43983252-43982730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 349
               

               Conread position:
               160-350
               

               Cow position:
               chr13:34186610-34186423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               99, 67
               

               Conread position:
               179-454
               

               Cow position:
               chr13:48357484-48357768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 52
               

               Conread position:
               252-580
               

               Cow position:
               chr13:11064181-11063844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               5, 79
               

               Conread position:
               260-608
               

               Cow position:
               chr13:6668116-6667761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 50
               

               Conread position:
               285-576
               

               Cow position:
               chr13:34042339-34042041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr13:30238276-30238602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               291-542
               

               Cow position:
               chr13:22766058-22766318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 20
               

               Conread position:
               305-607
               

               Cow position:
               chr13:30303323-30303636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 137
               

               Conread position:
               307-608
               

               Cow position:
               chr13:31734043-31733733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               348-608
               

               Cow position:
               chr13:34325465-34325203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 232
               

               Conread position:
               8-350
               

               Cow position:
               chr14:40339627-40339968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 26
               

               Conread position:
               8-591
               

               Cow position:
               chr14:35387205-35386597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 26
               

               Conread position:
               30-328
               

               Cow position:
               chr14:46084585-46084894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               69, 33
               

               Conread position:
               39-157
               

               Cow position:
               chr14:45303393-45303269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               52-608
               

               Cow position:
               chr14:44377466-44378033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 186
               

               Conread position:
               71-299
               

               Cow position:
               chr14:33675909-33676136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 98
               

               Conread position:
               71-332
               

               Cow position:
               chr14:17764784-17764519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 164
               

               Conread position:
               71-350
               

               Cow position:
               chr14:12609279-12609571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               41, 18
               

               Conread position:
               71-603
               

               Cow position:
               chr14:38146669-38147240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 18
               

               Conread position:
               164-540
               

               Cow position:
               chr14:35423408-35423789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               94, 42
               

               Conread position:
               164-572
               

               Cow position:
               chr14:37413669-37413243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               97, 67
               

               Conread position:
               169-540
               

               Cow position:
               chr14:45303164-45302790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 17
               

               Conread position:
               170-404
               

               Cow position:
               chr14:44676118-44676355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 81
               

               Conread position:
               177-545
               

               Cow position:
               chr14:33341922-33342305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 54
               

               Conread position:
               183-350
               

               Cow position:
               chr14:48824977-48825149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               188-544
               

               Cow position:
               chr14:14308765-14308387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               43, 64
               

               Conread position:
               260-608
               

               Cow position:
               chr14:44685926-44686278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 11
               

               Conread position:
               276-544
               

               Cow position:
               chr14:17761005-17760729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 23
               

               Conread position:
               285-607
               

               Cow position:
               chr14:20782362-20782689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-608
               

               Cow position:
               chr14:45161003-45161332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               289-607
               

               Cow position:
               chr14:16273388-16273069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 10
               

               Conread position:
               290-570
               

               Cow position:
               chr14:46464982-46465287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               24, 155
               

               Conread position:
               291-417
               

               Cow position:
               chr14:7830629-7830495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 15
               

               Conread position:
               291-460
               

               Cow position:
               chr14:19620131-19620308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               294-600
               

               Cow position:
               chr14:44226307-44226621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 292
               

               Conread position:
               297-604
               

               Cow position:
               chr14:13621227-13620914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 138
               

               Conread position:
               307-574
               

               Cow position:
               chr14:29047985-29047708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               309-603
               

               Cow position:
               chr14:45080972-45081273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 95
               

               Conread position:
               339-608
               

               Cow position:
               chr14:33393817-33393550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               9-142
               

               Cow position:
               chr15:32679627-32679498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               9-351
               

               Cow position:
               chr15:369743-369383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               92, 25
               

               Conread position:
               10-350
               

               Cow position:
               chr15:35648293-35647937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 24
               

               Conread position:
               10-497
               

               Cow position:
               chr15:36642559-36643059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 24
               

               Conread position:
               47-217
               

               Cow position:
               chr15:51672798-51672967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               49, 117
               

               Conread position:
               47-608
               

               Cow position:
               chr15:24794013-24794583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 37
               

               Conread position:
               71-527
               

               Cow position:
               chr15:12615162-12615619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 104
               

               Conread position:
               93-350
               

               Cow position:
               chr15:23264775-23265039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 27
               

               Conread position:
               98-592
               

               Cow position:
               chr15:686646-687148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 61
               

               Conread position:
               159-608
               

               Cow position:
               chr15:35735329-35735806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 241
               

               Conread position:
               167-608
               

               Cow position:
               chr15:16507770-16508222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               171-608
               

               Cow position:
               chr15:21449490-21449919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 40
               

               Conread position:
               180-516
               

               Cow position:
               chr15:1664286-1664619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               67, 31
               

               Conread position:
               182-608
               

               Cow position:
               chr15:7984227-7983791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 232
               

               Conread position:
               189-608
               

               Cow position:
               chr15:40105674-40106094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 15
               

               Conread position:
               206-608
               

               Cow position:
               chr15:1237509-1237912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               25, 5
               

               Conread position:
               219-592
               

               Cow position:
               chr15:51714788-51715178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               265-603
               

               Cow position:
               chr15:35753709-35753362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 21
               

               Conread position:
               280-607
               

               Cow position:
               chr15:4961539-4961875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               284-575
               

               Cow position:
               chr15:6593038-6592753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 7
               

               Conread position:
               284-608
               

               Cow position:
               chr15:7260532-7260856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 22
               

               Conread position:
               285-595
               

               Cow position:
               chr15:18332921-18332607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr15:6156046-6155714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-608
               

               Cow position:
               chr15:8099395-8099711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               286-607
               

               Cow position:
               chr15:8750333-8750656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               290-604
               

               Cow position:
               chr15:37392399-37392721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 209
               

               Conread position:
               304-608
               

               Cow position:
               chr15:7934254-7934560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 8
               

               Conread position:
               305-607
               

               Cow position:
               chr15:17292362-17292677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 218
               

               Conread position:
               305-608
               

               Cow position:
               chr15:1764014-1764327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 100
               

               Conread position:
               306-608
               

               Cow position:
               chr15:12421241-12420930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 100
               

               Conread position:
               307-453
               

               Cow position:
               chr15:4682157-4682312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               307-570
               

               Cow position:
               chr15:328353-328628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               307-608
               

               Cow position:
               chr15:690716-691004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 43
               

               Conread position:
               309-608
               

               Cow position:
               chr15:44828722-44829030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 278
               

               Conread position:
               8-592
               

               Cow position:
               chr16:25156621-25156005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               8-604
               

               Cow position:
               chr16:42739827-42739223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               9-604
               

               Cow position:
               chr16:49235550-49234947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 25
               

               Conread position:
               10-309
               

               Cow position:
               chr16:42050533-42050256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               148, 24
               

               Conread position:
               10-576
               

               Cow position:
               chr16:29033317-29033899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 23
               

               Conread position:
               10-608
               

               Cow position:
               chr16:25257203-25257824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 24
               

               Conread position:
               71-343
               

               Cow position:
               chr16:18499381-18499094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               28, 171
               

               Conread position:
               96-350
               

               Cow position:
               chr16:49256766-49256501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 146
               

               Conread position:
               98-314
               

               Cow position:
               chr16:30304962-30305184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               62, 37
               

               Conread position:
               98-546
               

               Cow position:
               chr16:5889890-5890339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 60
               

               Conread position:
               99-590
               

               Cow position:
               chr16:16272240-16271733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 134
               

               Conread position:
               285-604
               

               Cow position:
               chr16:1567894-1567569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr16:2727728-2727400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr16:12538365-12538038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               286-607
               

               Cow position:
               chr16:31592349-31592026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 294
               

               Conread position:
               290-446
               

               Cow position:
               chr16:1431721-1431885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               61, 16
               

               Conread position:
               305-607
               

               Cow position:
               chr16:28471525-28471215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 98
               

               Conread position:
               307-608
               

               Cow position:
               chr16:5661422-5661731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 130
               

               Conread position:
               9-243
               

               Cow position:
               chr17:14325336-14325100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               83, 25
               

               Conread position:
               10-217
               

               Cow position:
               chr17:36987517-36987307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               93, 24
               

               Conread position:
               71-351
               

               Cow position:
               chr17:152180-151904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               56, 50
               

               Conread position:
               81-608
               

               Cow position:
               chr17:4081973-4082514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 88
               

               Conread position:
               98-334
               

               Cow position:
               chr17:22557938-22558183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               48, 135
               

               Conread position:
               98-352
               

               Cow position:
               chr17:20402017-20402274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               62, 141
               

               Conread position:
               100-608
               

               Cow position:
               chr17:18300462-18299934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 21
               

               Conread position:
               125-604
               

               Cow position:
               chr17:42264881-42265382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 97
               

               Conread position:
               143-545
               

               Cow position:
               chr17:20487981-20488398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               293
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               35, 91
               

               Conread position:
               169-603
               

               Cow position:
               chr17:12670064-12669622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               280-605
               

               Cow position:
               chr17:14040904-14040573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 77
               

               Conread position:
               285-595
               

               Cow position:
               chr17:40804955-40805266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr17:6259982-6260308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 6
               

               Conread position:
               294-443
               

               Cow position:
               chr17:13856628-13856469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 149
               

               Conread position:
               305-607
               

               Cow position:
               chr17:24029845-24029544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 166
               

               Conread position:
               308-608
               

               Cow position:
               chr17:250314-250627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 283
               

               Conread position:
               8-157
               

               Cow position:
               chr18:56462524-56462371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               93, 26
               

               Conread position:
               8-608
               

               Cow position:
               chr18:54171479-54170864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               10-350
               

               Cow position:
               chr18:29237195-29237544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 15
               

               Conread position:
               98-335
               

               Cow position:
               chr18:16842778-16842541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 56
               

               Conread position:
               164-346
               

               Cow position:
               chr18:51275714-51275529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               95, 6
               

               Conread position:
               177-297
               

               Cow position:
               chr18:33749953-33750071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               241-608
               

               Cow position:
               chr18:33750311-33750686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 147
               

               Conread position:
               260-448
               

               Cow position:
               chr18:16534301-16534489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               90, 23
               

               Conread position:
               285-576
               

               Cow position:
               chr18:52651265-52651561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               286-429
               

               Cow position:
               chr18:24700767-24700616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               62, 20
               

               Conread position:
               292-607
               

               Cow position:
               chr18:28973553-28973216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               305-604
               

               Cow position:
               chr18:33336225-33336534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 285
               

               Conread position:
               8-427
               

               Cow position:
               chr19:263200-263646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 26
               

               Conread position:
               8-466
               

               Cow position:
               chr19:377525-377039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 27
               

               Conread position:
               8-585
               

               Cow position:
               chr19:163039-162452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 27
               

               Conread position:
               8-608
               

               Cow position:
               chr19:27052462-27051842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 21
               

               Conread position:
               9-300
               

               Cow position:
               chr19:44532502-44532812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               10-324
               

               Cow position:
               chr19:136969-136642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 24
               

               Conread position:
               10-385
               

               Cow position:
               chr19:43076-43471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 24
               

               Conread position:
               47-604
               

               Cow position:
               chr19:3138021-3138610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 198
               

               Conread position:
               48-585
               

               Cow position:
               chr19:352554-351997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 101
               

               Conread position:
               53-388
               

               Cow position:
               chr19:44224831-44224497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               162-344
               

               Cow position:
               chr19:39689240-39689421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               97, 67
               

               Conread position:
               177-416
               

               Cow position:
               chr19:32222790-32222533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               79, 51
               

               Conread position:
               177-608
               

               Cow position:
               chr19:39669277-39668836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               181-425
               

               Cow position:
               chr19:35377395-35377661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               50, 79
               

               Conread position:
               189-591
               

               Cow position:
               chr19:189682-190077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               280
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               276-607
               

               Cow position:
               chr19:893267-892931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               286-432
               

               Cow position:
               chr19:32665872-32666025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               64, 27
               

               Conread position:
               286-603
               

               Cow position:
               chr19:75904-75581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 43
               

               Conread position:
               305-595
               

               Cow position:
               chr19:204323-204622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 282
               

               Conread position:
               305-607
               

               Cow position:
               chr19:40852071-40851762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 182
               

               Conread position:
               307-608
               

               Cow position:
               chr19:28593626-28593934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 218
               

               Conread position:
               8-162
               

               Cow position:
               chr2:15062228-15062078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               8-298
               

               Cow position:
               chr2:2356641-2356348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               94, 27
               

               Conread position:
               9-343
               

               Cow position:
               chr2:14822333-14822671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 25
               

               Conread position:
               9-607
               

               Cow position:
               chr2:39622130-39622726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 25
               

               Conread position:
               9-608
               

               Cow position:
               chr2:34565099-34564502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 23
               

               Conread position:
               10-124
               

               Cow position:
               chr2:41149828-41149941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               10-139
               

               Cow position:
               chr2:36053820-36053692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               10-207
               

               Cow position:
               chr2:1672840-1672638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               146, 15
               

               Conread position:
               10-345
               

               Cow position:
               chr2:16289053-16289401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 138
               

               Conread position:
               10-350
               

               Cow position:
               chr2:15577739-15577394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               10-591
               

               Cow position:
               chr2:28643302-28642718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 24
               

               Conread position:
               11-576
               

               Cow position:
               chr2:5485452-5484887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 23
               

               Conread position:
               30-332
               

               Cow position:
               chr2:3836663-3836359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               75, 17
               

               Conread position:
               46-292
               

               Cow position:
               chr2:28620972-28620732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               112, 31
               

               Conread position:
               71-607
               

               Cow position:
               chr2:11729439-11729977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 166
               

               Conread position:
               71-608
               

               Cow position:
               chr2:42333293-42332750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 33
               

               Conread position:
               98-350
               

               Cow position:
               chr2:782141-781881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 138
               

               Conread position:
               100-486
               

               Cow position:
               chr2:28747748-28748148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               63, 134
               

               Conread position:
               115-586
               

               Cow position:
               chr2:5963479-5962983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 488
               

               Conread position:
               160-471
               

               Cow position:
               chr2:1362819-1363144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 113
               

               Conread position:
               161-350
               

               Cow position:
               chr2:41149958-41150150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               145, 71
               

               Conread position:
               161-450
               

               Cow position:
               chr2:78741961-78742273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               162-523
               

               Cow position:
               chr2:7902684-7903051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 60
               

               Conread position:
               164-592
               

               Cow position:
               chr2:35355352-35355799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 85
               

               Conread position:
               168-541
               

               Cow position:
               chr2:37790164-37789805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 60
               

               Conread position:
               170-529
               

               Cow position:
               chr2:36030671-36030304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 284
               

               Conread position:
               185-336
               

               Cow position:
               chr2:15060852-15060693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               74, 51
               

               Conread position:
               218-608
               

               Cow position:
               chr2:41686221-41686623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 183
               

               Conread position:
               236-542
               

               Cow position:
               chr2:49604693-49604989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               285-607
               

               Cow position:
               chr2:8118328-8118655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               288-535
               

               Cow position:
               chr2:69584834-69584578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               291-442
               

               Cow position:
               chr2:52152066-52151916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               29, 15
               

               Conread position:
               295-574
               

               Cow position:
               chr2:5905067-5904781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 262
               

               Conread position:
               305-465
               

               Cow position:
               chr2:4926367-4926197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               305-594
               

               Cow position:
               chr2:24146668-24146965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 132
               

               Conread position:
               306-607
               

               Cow position:
               chr2:78762270-78762561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               44, 96
               

               Conread position:
               307-593
               

               Cow position:
               chr2:5870547-5870251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 69
               

               Conread position:
               307-608
               

               Cow position:
               chr2:41172480-41172785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 275
               

               Conread position:
               307-608
               

               Cow position:
               chr2:54737310-54737620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               8-561
               

               Cow position:
               chr20:18315268-18314734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 26
               

               Conread position:
               46-608
               

               Cow position:
               chr20:8215554-8216152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 170
               

               Conread position:
               72-592
               

               Cow position:
               chr20:8993138-8992602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 58
               

               Conread position:
               78-292
               

               Cow position:
               chr20:22207037-22207247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               164-592
               

               Cow position:
               chr20:22717117-22716715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 44
               

               Conread position:
               185-574
               

               Cow position:
               chr20:20754276-20753884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 32
               

               Conread position:
               204-608
               

               Cow position:
               chr20:31377981-31377572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 216
               

               Conread position:
               274-607
               

               Cow position:
               chr20:29948804-29949134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 10
               

               Conread position:
               279-607
               

               Cow position:
               chr20:35124795-35125131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 27
               

               Conread position:
               290-490
               

               Cow position:
               chr20:42076752-42076546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               60, 137
               

               Conread position:
               291-462
               

               Cow position:
               chr20:10845810-10845629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               291-607
               

               Cow position:
               chr20:21393905-21394228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 15
               

               Conread position:
               321-491
               

               Cow position:
               chr20:19352881-19353050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               100, 60
               

               Conread position:
               8-350
               

               Cow position:
               chr21:9870206-9870545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 17
               

               Conread position:
               8-575
               

               Cow position:
               chr21:9892066-9892649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               8-604
               

               Cow position:
               chr21:29233-29823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 26
               

               Conread position:
               9-603
               

               Cow position:
               chr21:359496-360109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               10-608
               

               Cow position:
               chr21:23812339-23812925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 25
               

               Conread position:
               16-182
               

               Cow position:
               chr21:30226485-30226656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               91, 18
               

               Conread position:
               20-348
               

               Cow position:
               chr21:4183986-4184319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 14
               

               Conread position:
               30-603
               

               Cow position:
               chr21:2540928-2540345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 205
               

               Conread position:
               77-566
               

               Cow position:
               chr21:2710724-2711210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 18
               

               Conread position:
               164-608
               

               Cow position:
               chr21:23861614-23862073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 13
               

               Conread position:
               183-443
               

               Cow position:
               chr21:6109872-6110149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               76, 267
               

               Conread position:
               198-608
               

               Cow position:
               chr21:27565726-27566157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 11
               

               Conread position:
               225-595
               

               Cow position:
               chr21:21915036-21915423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 260
               

               Conread position:
               285-607
               

               Cow position:
               chr21:3779192-3779522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr21:40271255-40270927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               306-545
               

               Cow position:
               chr21:467333-467577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               306-595
               

               Cow position:
               chr21:146367-146664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 21
               

               Conread position:
               306-608
               

               Cow position:
               chr21:4091085-4091396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 281
               

               Conread position:
               306-608
               

               Cow position:
               chr21:28735673-28735984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 212
               

               Conread position:
               307-608
               

               Cow position:
               chr21:37371683-37371993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               309-608
               

               Cow position:
               chr21:2416660-2416962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 87
               

               Conread position:
               5-198
               

               Cow position:
               chr22:37132171-37132361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               153, 29
               

               Conread position:
               8-322
               

               Cow position:
               chr22:46547861-46548170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               94, 27
               

               Conread position:
               8-576
               

               Cow position:
               chr22:3306441-3305851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 26
               

               Conread position:
               8-585
               

               Cow position:
               chr22:23853621-23854213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 26
               

               Conread position:
               8-608
               

               Cow position:
               chr22:35907426-35906816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 26
               

               Conread position:
               10-608
               

               Cow position:
               chr22:13917796-13918415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 198
               

               Conread position:
               11-400
               

               Cow position:
               chr22:1283363-1282947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 23
               

               Conread position:
               16-187
               

               Cow position:
               chr22:8135910-8135731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               34-152
               

               Cow position:
               chr22:1270233-1270111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               105
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               66, 84
               

               Conread position:
               36-414
               

               Cow position:
               chr22:310387-310771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               190, 20
               

               Conread position:
               44-591
               

               Cow position:
               chr22:1322131-1322684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 33
               

               Conread position:
               46-428
               

               Cow position:
               chr22:44609916-44610298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 25
               

               Conread position:
               50-351
               

               Cow position:
               chr22:41419370-41419062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               47, 76
               

               Conread position:
               98-350
               

               Cow position:
               chr22:8740384-8740137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               102-608
               

               Cow position:
               chr22:6503090-6502558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 145
               

               Conread position:
               159-608
               

               Cow position:
               chr22:1269671-1269216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 60
               

               Conread position:
               168-602
               

               Cow position:
               chr22:11031883-11032322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               187-607
               

               Cow position:
               chr22:37132577-37133000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               204-546
               

               Cow position:
               chr22:8875776-8876132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               147, 51
               

               Conread position:
               260-592
               

               Cow position:
               chr22:36183986-36184315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 11
               

               Conread position:
               285-607
               

               Cow position:
               chr22:17328486-17328159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               305-521
               

               Cow position:
               chr22:15851584-15851810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               45, 216
               

               Conread position:
               305-592
               

               Cow position:
               chr22:48004803-48005102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 144
               

               Conread position:
               306-575
               

               Cow position:
               chr22:34599675-34599943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               44, 99
               

               Conread position:
               306-608
               

               Cow position:
               chr22:44369361-44369052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 96
               

               Conread position:
               307-471
               

               Cow position:
               chr22:44490150-44490324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               307-592
               

               Cow position:
               chr22:27309508-27309218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 276
               

               Conread position:
               307-608
               

               Cow position:
               chr22:326899-326593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 125
               

               Conread position:
               307-608
               

               Cow position:
               chr22:537366-537674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               307-608
               

               Cow position:
               chr22:5308372-5308677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               307-608
               

               Cow position:
               chr22:18027544-18027855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 281
               

               Conread position:
               308-454
               

               Cow position:
               chr22:1522283-1522439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               71-369
               

               Cow position:
               chr23:38578720-38579004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               125-608
               

               Cow position:
               chr23:16615350-16614859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 44
               

               Conread position:
               139-608
               

               Cow position:
               chr23:4752704-4753171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 89
               

               Conread position:
               169-575
               

               Cow position:
               chr23:1402362-1401947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 25
               

               Conread position:
               172-440
               

               Cow position:
               chr23:22875174-22874913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               79, 51
               

               Conread position:
               283-576
               

               Cow position:
               chr23:25683796-25683490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 250
               

               Conread position:
               285-595
               

               Cow position:
               chr23:2716641-2716957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               286-572
               

               Cow position:
               chr23:4510331-4510616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 5
               

               Conread position:
               286-608
               

               Cow position:
               chr23:2781961-2781633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 20
               

               Conread position:
               287-608
               

               Cow position:
               chr23:3014645-3014975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               289-607
               

               Cow position:
               chr23:27399758-27400080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 10
               

               Conread position:
               291-521
               

               Cow position:
               chr23:2574793-2575029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               187
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               291-586
               

               Cow position:
               chr23:31594990-31594692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               291-608
               

               Cow position:
               chr23:29452060-29451742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               305-595
               

               Cow position:
               chr23:15177341-15177639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 277
               

               Conread position:
               308-600
               

               Cow position:
               chr23:4434725-4435026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 279
               

               Conread position:
               10-363
               

               Cow position:
               chr24:12797390-12797028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 24
               

               Conread position:
               10-603
               

               Cow position:
               chr24:16648940-16648321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 24
               

               Conread position:
               10-608
               

               Cow position:
               chr24:36559708-36559095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 24
               

               Conread position:
               27-600
               

               Cow position:
               chr24:12206242-12205654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 177
               

               Conread position:
               56-603
               

               Cow position:
               chr24:38637646-38638205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 44
               

               Conread position:
               61-461
               

               Cow position:
               chr24:17313440-17313029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               287
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               99, 174
               

               Conread position:
               71-476
               

               Cow position:
               chr24:36708363-36708802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               31, 72
               

               Conread position:
               99-298
               

               Cow position:
               chr24:16377067-16377263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 125
               

               Conread position:
               103-552
               

               Cow position:
               chr24:7091029-7090556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 30
               

               Conread position:
               110-608
               

               Cow position:
               chr24:6335994-6336505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 124
               

               Conread position:
               182-461
               

               Cow position:
               chr24:8152215-8151942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               108, 54
               

               Conread position:
               187-594
               

               Cow position:
               chr24:14333707-14334117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 56
               

               Conread position:
               260-608
               

               Cow position:
               chr24:33933682-33934034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 11
               

               Conread position:
               286-496
               

               Cow position:
               chr24:37217347-37217564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               18, 163
               

               Conread position:
               287-439
               

               Cow position:
               chr24:12162195-12162353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               289-581
               

               Cow position:
               chr24:12130634-12130335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 296
               

               Conread position:
               291-604
               

               Cow position:
               chr24:12086542-12086860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               294-585
               

               Cow position:
               chr24:4415185-4414890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 40
               

               Conread position:
               307-608
               

               Cow position:
               chr24:43814115-43814424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 142
               

               Conread position:
               71-608
               

               Cow position:
               chr25:11933048-11932481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 52
               

               Conread position:
               131-534
               

               Cow position:
               chr25:18254834-18254429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               86, 98
               

               Conread position:
               163-509
               

               Cow position:
               chr25:18094366-18094724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               164-499
               

               Cow position:
               chr25:23344744-23344384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               60, 68
               

               Conread position:
               238-467
               

               Cow position:
               chr25:33665443-33665197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               285-576
               

               Cow position:
               chr25:26279554-26279838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               291-596
               

               Cow position:
               chr25:9544361-9544669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               294-568
               

               Cow position:
               chr25:24659554-24659837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 143
               

               Conread position:
               307-607
               

               Cow position:
               chr25:13781344-13781653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 280
               

               Conread position:
               307-607
               

               Cow position:
               chr25:18274668-18274356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 283
               

               Conread position:
               319-576
               

               Cow position:
               chr25:18303725-18303996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               10-357
               

               Cow position:
               chr26:9845236-9844887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 15
               

               Conread position:
               124-349
               

               Cow position:
               chr26:12656591-12656829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               36, 17
               

               Conread position:
               159-384
               

               Cow position:
               chr26:20255539-20255772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               17, 63
               

               Conread position:
               181-608
               

               Cow position:
               chr26:4334102-4333660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 46
               

               Conread position:
               291-428
               

               Cow position:
               chr26:23603189-23603042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               306-592
               

               Cow position:
               chr26:12588239-12587943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 282
               

               Conread position:
               131-607
               

               Cow position:
               chr27:26555576-26555086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               168-301
               

               Cow position:
               chr27:20028704-20028572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               222-449
               

               Cow position:
               chr27:8567901-8568144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               8-585
               

               Cow position:
               chr28:5797769-5798347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 17
               

               Conread position:
               9-196
               

               Cow position:
               chr28:2989370-2989177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               100, 26
               

               Conread position:
               9-345
               

               Cow position:
               chr28:5764584-5764907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 16
               

               Conread position:
               9-453
               

               Cow position:
               chr28:21359338-21359810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               9-601
               

               Cow position:
               chr28:7789947-7789334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 25
               

               Conread position:
               10-335
               

               Cow position:
               chr28:7817479-7817810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               250
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               57, 26
               

               Conread position:
               10-576
               

               Cow position:
               chr28:10071317-10071877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 15
               

               Conread position:
               11-608
               

               Cow position:
               chr28:5813023-5813635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 23
               

               Conread position:
               24-332
               

               Cow position:
               chr28:28117844-28118168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               71-280
               

               Cow position:
               chr28:11356989-11356769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               28, 168
               

               Conread position:
               126-565
               

               Cow position:
               chr28:14913642-14914100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               309
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               113, 10
               

               Conread position:
               131-348
               

               Cow position:
               chr28:24704363-24704596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               27, 102
               

               Conread position:
               169-346
               

               Cow position:
               chr28:14946816-14946991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               90, 8
               

               Conread position:
               175-590
               

               Cow position:
               chr28:10497836-10497414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 19
               

               Conread position:
               179-488
               

               Cow position:
               chr28:10617638-10617322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               180-576
               

               Cow position:
               chr28:10647197-10646800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 52
               

               Conread position:
               185-608
               

               Cow position:
               chr28:2989049-2988617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 40
               

               Conread position:
               195-387
               

               Cow position:
               chr28:8721152-8720946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               22, 37
               

               Conread position:
               230-603
               

               Cow position:
               chr28:3020510-3020133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 76
               

               Conread position:
               307-608
               

               Cow position:
               chr28:22233090-22232780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               9-143
               

               Cow position:
               chr29:2749913-2749781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               9-157
               

               Cow position:
               chr29:5982904-5982757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               31-604
               

               Cow position:
               chr29:14086129-14085546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 122
               

               Conread position:
               103-583
               

               Cow position:
               chr29:15949480-15948984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 131
               

               Conread position:
               164-608
               

               Cow position:
               chr29:105161-105627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 61
               

               Conread position:
               168-604
               

               Cow position:
               chr29:802799-802347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 221
               

               Conread position:
               180-362
               

               Cow position:
               chr29:31488167-31488354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               44, 178
               

               Conread position:
               285-585
               

               Cow position:
               chr29:10823706-10823402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               288-607
               

               Cow position:
               chr29:39079448-39079121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 47
               

               Conread position:
               291-534
               

               Cow position:
               chr29:42650533-42650785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               291-602
               

               Cow position:
               chr29:42802393-42802712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               294-607
               

               Cow position:
               chr29:40502714-40502393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 30
               

               Conread position:
               305-557
               

               Cow position:
               chr29:410245-409985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 214
               

               Conread position:
               305-604
               

               Cow position:
               chr29:2841093-2840789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 99
               

               Conread position:
               305-608
               

               Cow position:
               chr29:21426750-21426438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 282
               

               Conread position:
               317-607
               

               Cow position:
               chr29:45587076-45586777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 270
               

               Conread position:
               8-199
               

               Cow position:
               chr3:29595413-29595611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               99, 26
               

               Conread position:
               8-608
               

               Cow position:
               chr3:52864250-52863626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 17
               

               Conread position:
               9-240
               

               Cow position:
               chr3:3054780-3055006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               54, 14
               

               Conread position:
               9-537
               

               Cow position:
               chr3:64357948-64357411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 25
               

               Conread position:
               9-590
               

               Cow position:
               chr3:66990984-66991573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 7
               

               Conread position:
               10-156
               

               Cow position:
               chr3:6685671-6685818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               95, 24
               

               Conread position:
               10-157
               

               Cow position:
               chr3:19802870-19803021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               90, 24
               

               Conread position:
               10-202
               

               Cow position:
               chr3:48230784-48230590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               148, 24
               

               Conread position:
               33-254
               

               Cow position:
               chr3:63004501-63004271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               79, 109
               

               Conread position:
               44-527
               

               Cow position:
               chr3:24591396-24590898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 197
               

               Conread position:
               71-591
               

               Cow position:
               chr3:15178671-15179188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 97
               

               Conread position:
               72-297
               

               Cow position:
               chr3:5391350-5391574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               20, 94
               

               Conread position:
               114-608
               

               Cow position:
               chr3:2907762-2907266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 35
               

               Conread position:
               141-350
               

               Cow position:
               chr3:50127693-50127475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               19, 67
               

               Conread position:
               141-597
               

               Cow position:
               chr3:58947643-58948122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 329
               

               Conread position:
               160-592
               

               Cow position:
               chr3:6685849-6686299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 76
               

               Conread position:
               168-588
               

               Cow position:
               chr3:4027829-4028227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 43
               

               Conread position:
               185-330
               

               Cow position:
               chr3:29597137-29597293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               50, 42
               

               Conread position:
               221-432
               

               Cow position:
               chr3:38492764-38492971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               240-575
               

               Cow position:
               chr3:77423936-77424284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               257-592
               

               Cow position:
               chr3:36881768-36881425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               260-607
               

               Cow position:
               chr3:3981894-3982250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 211
               

               Conread position:
               263-608
               

               Cow position:
               chr3:45895397-45895038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 8
               

               Conread position:
               263-608
               

               Cow position:
               chr3:45974658-45975015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 8
               

               Conread position:
               285-607
               

               Cow position:
               chr3:5954005-5953679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr3:57484549-57484223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               291-592
               

               Cow position:
               chr3:46502719-46503027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               306-447
               

               Cow position:
               chr3:19944242-19944393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               306-590
               

               Cow position:
               chr3:63003347-63003057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               307-588
               

               Cow position:
               chr3:50011870-50012156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               212
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               44, 114
               

               Conread position:
               307-592
               

               Cow position:
               chr3:3523214-3523506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 192
               

               Conread position:
               307-592
               

               Cow position:
               chr3:40339919-40339625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               307-607
               

               Cow position:
               chr3:37969241-37969547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 86
               

               Conread position:
               307-608
               

               Cow position:
               chr3:46679624-46679933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 213
               

               Conread position:
               307-608
               

               Cow position:
               chr3:50915525-50915834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 197
               

               Conread position:
               308-608
               

               Cow position:
               chr3:56340226-56339919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 279
               

               Conread position:
               8-157
               

               Cow position:
               chr4:60264544-60264392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               89, 27
               

               Conread position:
               8-196
               

               Cow position:
               chr4:21337983-21337787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               150, 27
               

               Conread position:
               9-333
               

               Cow position:
               chr4:1463910-1463573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               243
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               91, 16
               

               Conread position:
               10-596
               

               Cow position:
               chr4:28831048-28831642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 24
               

               Conread position:
               10-608
               

               Cow position:
               chr4:46664218-46664829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 24
               

               Conread position:
               177-592
               

               Cow position:
               chr4:60264291-60263866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 55
               

               Conread position:
               181-524
               

               Cow position:
               chr4:11385632-11385969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 30
               

               Conread position:
               225-585
               

               Cow position:
               chr4:34184604-34184244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 24
               

               Conread position:
               276-559
               

               Cow position:
               chr4:12607687-12607406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 79
               

               Conread position:
               285-607
               

               Cow position:
               chr4:48026382-48026712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-608
               

               Cow position:
               chr4:31669257-31669583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               289-604
               

               Cow position:
               chr4:25599514-25599192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 10
               

               Conread position:
               307-592
               

               Cow position:
               chr4:18424527-18424233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               307-608
               

               Cow position:
               chr4:18190403-18190713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 280
               

               Conread position:
               10-446
               

               Cow position:
               chr5:61272742-61272301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 24
               

               Conread position:
               10-608
               

               Cow position:
               chr5:46659836-46660440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 14
               

               Conread position:
               15-157
               

               Cow position:
               chr5:49593330-49593184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               16-247
               

               Cow position:
               chr5:40053576-40053804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               137, 18
               

               Conread position:
               33-458
               

               Cow position:
               chr5:41962136-41961684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 217
               

               Conread position:
               37-563
               

               Cow position:
               chr5:41358264-41357729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               345
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               22, 29
               

               Conread position:
               52-430
               

               Cow position:
               chr5:23228493-23228898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               56-607
               

               Cow position:
               chr5:27001880-27002433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 15
               

               Conread position:
               71-402
               

               Cow position:
               chr5:46630176-46629832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               71-419
               

               Cow position:
               chr5:25000380-25000003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               71-608
               

               Cow position:
               chr5:39247141-39246601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 116
               

               Conread position:
               97-461
               

               Cow position:
               chr5:27058827-27058481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               162, 57
               

               Conread position:
               98-585
               

               Cow position:
               chr5:41528877-41528374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 138
               

               Conread position:
               285-607
               

               Cow position:
               chr5:415642-415315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr5:57482466-57482137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               289-471
               

               Cow position:
               chr5:32945955-32946147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               291-552
               

               Cow position:
               chr5:49119196-49118928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               291-608
               

               Cow position:
               chr5:31101540-31101222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               307-608
               

               Cow position:
               chr5:27909180-27908870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               320-417
               

               Cow position:
               chr5:6611932-6611836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               83
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               8-453
               

               Cow position:
               chr6:6476230-6475762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 27
               

               Conread position:
               10-350
               

               Cow position:
               chr6:38232539-38232879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 24
               

               Conread position:
               12-217
               

               Cow position:
               chr6:37116399-37116599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               90, 22
               

               Conread position:
               31-269
               

               Cow position:
               chr6:43608079-43607834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               71-356
               

               Cow position:
               chr6:32330396-32330127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               28, 10
               

               Conread position:
               71-593
               

               Cow position:
               chr6:15476899-15477439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 55
               

               Conread position:
               71-608
               

               Cow position:
               chr6:1100181-1099633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               359
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               158, 71
               

               Conread position:
               71-608
               

               Cow position:
               chr6:35419833-35419298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 167
               

               Conread position:
               82-590
               

               Cow position:
               chr6:10643543-10644080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 166
               

               Conread position:
               164-608
               

               Cow position:
               chr6:2887269-2887731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 65
               

               Conread position:
               168-608
               

               Cow position:
               chr6:7179169-7178725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 62
               

               Conread position:
               170-579
               

               Cow position:
               chr6:33995224-33994805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               176-602
               

               Cow position:
               chr6:8021024-8021457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               238-608
               

               Cow position:
               chr6:38900998-38900621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               257-607
               

               Cow position:
               chr6:52693218-52693571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 13
               

               Conread position:
               270-607
               

               Cow position:
               chr6:1822423-1822084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               276-501
               

               Cow position:
               chr6:43607491-43607259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               285-435
               

               Cow position:
               chr6:913875-914032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-576
               

               Cow position:
               chr6:65841806-65842104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 50
               

               Conread position:
               285-607
               

               Cow position:
               chr6:55544105-55543776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               286-607
               

               Cow position:
               chr6:36526269-36526598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 5
               

               Conread position:
               289-498
               

               Cow position:
               chr6:4508203-4507984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               289-608
               

               Cow position:
               chr6:64715452-64715779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 298
               

               Conread position:
               292-608
               

               Cow position:
               chr6:13317277-13316957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               305-585
               

               Cow position:
               chr6:40867322-40867034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               306-608
               

               Cow position:
               chr6:65928203-65928515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               307-608
               

               Cow position:
               chr6:26670624-26670324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 261
               

               Conread position:
               307-608
               

               Cow position:
               chr6:43617949-43618259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 280
               

               Conread position:
               8-149
               

               Cow position:
               chr7:24934618-24934476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               94, 17
               

               Conread position:
               8-157
               

               Cow position:
               chr7:48633761-48633909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               8-350
               

               Cow position:
               chr7:53991102-53991432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 19
               

               Conread position:
               8-405
               

               Cow position:
               chr7:3155127-3155554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 18
               

               Conread position:
               8-604
               

               Cow position:
               chr7:51014291-51014908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 26
               

               Conread position:
               9-461
               

               Cow position:
               chr7:39107887-39107421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 18
               

               Conread position:
               10-174
               

               Cow position:
               chr7:68777808-68777646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               10-592
               

               Cow position:
               chr7:29370244-29369675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 19
               

               Conread position:
               10-608
               

               Cow position:
               chr7:29470472-29471091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 23
               

               Conread position:
               71-608
               

               Cow position:
               chr7:58993669-58994228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               98-350
               

               Cow position:
               chr7:67426459-67426713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               160, 113
               

               Conread position:
               98-602
               

               Cow position:
               chr7:68908430-68908948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 138
               

               Conread position:
               103-600
               

               Cow position:
               chr7:4415485-4416005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 131
               

               Conread position:
               107-590
               

               Cow position:
               chr7:21310604-21311102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 40
               

               Conread position:
               165-352
               

               Cow position:
               chr7:6488277-6488092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               154
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               94, 66
               

               Conread position:
               168-454
               

               Cow position:
               chr7:55280143-55279857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               181, 61
               

               Conread position:
               169-608
               

               Cow position:
               chr7:48634624-48635072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 50
               

               Conread position:
               172-459
               

               Cow position:
               chr7:1734603-1734298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               57, 294
               

               Conread position:
               176-446
               

               Cow position:
               chr7:54644315-54644036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               83, 34
               

               Conread position:
               243-507
               

               Cow position:
               chr7:59683541-59683811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               59, 187
               

               Conread position:
               287-585
               

               Cow position:
               chr7:5183718-5184020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 19
               

               Conread position:
               291-608
               

               Cow position:
               chr7:21929459-21929783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 15
               

               Conread position:
               305-604
               

               Cow position:
               chr7:68232267-68232568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 80
               

               Conread position:
               8-594
               

               Cow position:
               chr8:24420001-24419396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 26
               

               Conread position:
               8-608
               

               Cow position:
               chr8:11970062-11969458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               9-254
               

               Cow position:
               chr8:33430449-33430713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               83, 25
               

               Conread position:
               9-350
               

               Cow position:
               chr8:44693819-44694154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 25
               

               Conread position:
               10-563
               

               Cow position:
               chr8:42161197-42160638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 118
               

               Conread position:
               15-608
               

               Cow position:
               chr8:38606983-38606374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               16-350
               

               Cow position:
               chr8:44076346-44076003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               25-541
               

               Cow position:
               chr8:61034797-61034257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               30-158
               

               Cow position:
               chr8:1117453-1117586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               52-608
               

               Cow position:
               chr8:58186942-58186390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               71-299
               

               Cow position:
               chr8:16083942-16084183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               24, 150
               

               Conread position:
               102-603
               

               Cow position:
               chr8:42468044-42468537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 115
               

               Conread position:
               125-441
               

               Cow position:
               chr8:55438291-55437992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               173, 66
               

               Conread position:
               168-580
               

               Cow position:
               chr8:12543048-12542657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 41
               

               Conread position:
               256-549
               

               Cow position:
               chr8:8229309-8229012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 15
               

               Conread position:
               257-607
               

               Cow position:
               chr8:11802292-11802647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               257-607
               

               Cow position:
               chr8:19330208-19330562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 13
               

               Conread position:
               260-592
               

               Cow position:
               chr8:2170903-2170565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 11
               

               Conread position:
               276-599
               

               Cow position:
               chr8:42419950-42419618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 250
               

               Conread position:
               285-417
               

               Cow position:
               chr8:27925814-27925954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               63, 8
               

               Conread position:
               285-550
               

               Cow position:
               chr8:51667796-51667524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               285-593
               

               Cow position:
               chr8:5016680-5016990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               291-608
               

               Cow position:
               chr8:46944415-46944086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 15
               

               Conread position:
               296-607
               

               Cow position:
               chr8:47661816-47661499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 15
               

               Conread position:
               306-461
               

               Cow position:
               chr8:33430917-33431082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               307-592
               

               Cow position:
               chr8:2886262-2886555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 129
               

               Conread position:
               307-608
               

               Cow position:
               chr8:47074783-47075089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 98
               

               Conread position:
               15-608
               

               Cow position:
               chr9:13477026-13476407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               15-608
               

               Cow position:
               chr9:44818056-44818653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 10
               

               Conread position:
               71-550
               

               Cow position:
               chr9:1635880-1636367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               29, 170
               

               Conread position:
               71-603
               

               Cow position:
               chr9:28688013-28688579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               71-604
               

               Cow position:
               chr9:64119157-64119691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 41
               

               Conread position:
               71-608
               

               Cow position:
               chr9:9705476-9706023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               372
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               89, 29
               

               Conread position:
               99-350
               

               Cow position:
               chr9:34721422-34721687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 133
               

               Conread position:
               99-608
               

               Cow position:
               chr9:3803281-3803816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 506
               

               Conread position:
               125-350
               

               Cow position:
               chr9:44795046-44795283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               126-425
               

               Cow position:
               chr9:2001032-2000704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               37, 112
               

               Conread position:
               164-348
               

               Cow position:
               chr9:43663581-43663768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               126, 64
               

               Conread position:
               168-522
               

               Cow position:
               chr9:3354658-3354290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 63
               

               Conread position:
               260-608
               

               Cow position:
               chr9:3566724-3566362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 10
               

               Conread position:
               285-585
               

               Cow position:
               chr9:37162664-37162358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr9:10321959-10322278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 6
               

               Conread position:
               285-607
               

               Cow position:
               chr9:59536246-59536569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               286-595
               

               Cow position:
               chr9:42569048-42569366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               305-511
               

               Cow position:
               chr9:1995746-1995531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               305-604
               

               Cow position:
               chr9:59173992-59173677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 289
               

               Conread position:
               305-607
               

               Cow position:
               chr9:22653734-22654045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               8-349
               

               Cow position:
               chrX:21587288-21587647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 26
               

               Conread position:
               9-575
               

               Cow position:
               chrX:6282983-6282402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 25
               

               Conread position:
               10-157
               

               Cow position:
               chrX:31725123-31725274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               97, 19
               

               Conread position:
               30-608
               

               Cow position:
               chrX:2536682-2536067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 219
               

               Conread position:
               36-185
               

               Cow position:
               chrX:27959858-27960013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               37-593
               

               Cow position:
               chrX:26427857-26427281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               375
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               71-350
               

               Cow position:
               chrX:34991739-34992022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               71-603
               

               Cow position:
               chrX:22130441-22129864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 52
               

               Conread position:
               71-608
               

               Cow position:
               chrX:17668058-17667515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 115
               

               Conread position:
               78-594
               

               Cow position:
               chrX:13052865-13053388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 11
               

               Conread position:
               155-575
               

               Cow position:
               chrX:31081890-31082322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               135, 35
               

               Conread position:
               157-567
               

               Cow position:
               chrX:6015156-6014718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               289
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               63, 72
               

               Conread position:
               161-447
               

               Cow position:
               chrX:16016751-16016453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               129, 16
               

               Conread position:
               161-604
               

               Cow position:
               chrX:44387057-44387503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 37
               

               Conread position:
               164-592
               

               Cow position:
               chrX:40246951-40246511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               164-608
               

               Cow position:
               chrX:20697157-20696720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 62
               

               Conread position:
               168-347
               

               Cow position:
               chrX:30004097-30004280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               91, 9
               

               Conread position:
               169-608
               

               Cow position:
               chrX:18534422-18534849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               180-350
               

               Cow position:
               chrX:31726053-31726232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               75, 48
               

               Conread position:
               257-604
               

               Cow position:
               chrX:23019354-23019704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 15
               

               Conread position:
               284-491
               

               Cow position:
               chrX:28603403-28603192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               66, 7
               

               Conread position:
               284-604
               

               Cow position:
               chrX:26767142-26766815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 7
               

               Conread position:
               286-608
               

               Cow position:
               chrX:29285488-29285820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 210
               

               Conread position:
               291-592
               

               Cow position:
               chrX:12478784-12479091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 19
               

               Conread position:
               305-607
               

               Cow position:
               chrX:320541-320848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 274
               

               Conread position:
               305-607
               

               Cow position:
               chrX:970841-971153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 279
               

               Conread position:
               306-592
               

               Cow position:
               chrX:16363056-16362761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 281
               

               Conread position:
               306-608
               

               Cow position:
               chrX:30055669-30055356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 283
               

               Conread position:
               307-592
               

               Cow position:
               chrX:28562145-28561852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 171
               

               Conread position:
               307-604
               

               Cow position:
               chrX:28634347-28634043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 135
               

               Conread position:
               308-604
               

               Cow position:
               chrX:39563861-39563558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 274
               

               Conread position:
               319-608
               

               Cow position:
               chrX:1689698-1689413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               10, 29
Conread position:	8-608
Cow position:	chr1:67286846-67287452 (view UCSC Genome Browser custom track)
Alignm length:	619
Alignm identity:	459
Alignm E-value:	0
Alignm gaps (pig, cow):	98, 26
Conread position:	10-173
Cow position:	chr1:55322715-55322550 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	125
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	89, 24
Conread position:	16-292
Cow position:	chr1:94253267-94253549 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	210
Alignm E-value:	4.99997e-41
Alignm gaps (pig, cow):	86, 18
Conread position:	16-578
Cow position:	chr1:40513033-40512442 (view UCSC Genome Browser custom track)
Alignm length:	596
Alignm identity:	461
Alignm E-value:	0
Alignm gaps (pig, cow):	81, 8
Conread position:	17-459
Cow position:	chr1:21720237-21720693 (view UCSC Genome Browser custom track)
Alignm length:	463
Alignm identity:	347
Alignm E-value:	0
Alignm gaps (pig, cow):	141, 17
Conread position:	39-157
Cow position:	chr1:38387341-38387226 (view UCSC Genome Browser custom track)
Alignm length:	119
Alignm identity:	95
Alignm E-value:	6e-22
Alignm gaps (pig, cow):	7, 0
Conread position:	56-356
Cow position:	chr1:30027073-30026773 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	210
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	56, 19
Conread position:	64-344
Cow position:	chr1:34690081-34690377 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	203
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	43, 177
Conread position:	98-310
Cow position:	chr1:31418436-31418216 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	157
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	63, 0
Conread position:	156-476
Cow position:	chr1:5319319-5319640 (view UCSC Genome Browser custom track)
Alignm length:	333
Alignm identity:	221
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	61, 72
Conread position:	156-575
Cow position:	chr1:88270048-88269617 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	305
Alignm E-value:	0
Alignm gaps (pig, cow):	96, 75
Conread position:	164-378
Cow position:	chr1:29413971-29413747 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	174
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	95, 64
Conread position:	169-552
Cow position:	chr1:22344110-22344485 (view UCSC Genome Browser custom track)
Alignm length:	394
Alignm identity:	278
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 51
Conread position:	178-429
Cow position:	chr1:38387158-38386900 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	205
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	81, 12
Conread position:	181-603
Cow position:	chr1:59647464-59647907 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	297
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	81, 68
Conread position:	183-388
Cow position:	chr1:58179506-58179293 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	163
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	104, 28
Conread position:	203-608
Cow position:	chr1:55321935-55321516 (view UCSC Genome Browser custom track)
Alignm length:	430
Alignm identity:	333
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 28
Conread position:	225-433
Cow position:	chr1:86610071-86610289 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	158
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	62, 17
Conread position:	285-595
Cow position:	chr1:33551226-33551541 (view UCSC Genome Browser custom track)
Alignm length:	321
Alignm identity:	252
Alignm E-value:	0
Alignm gaps (pig, cow):	67, 6
Conread position:	287-608
Cow position:	chr1:102549538-102549859 (view UCSC Genome Browser custom track)
Alignm length:	334
Alignm identity:	250
Alignm E-value:	0
Alignm gaps (pig, cow):	63, 19