Non-Coding RNA Search

Cow genome map


           Conread name:
           Liv1-LVRM10127A01
        

               Conread position:
               1-311
               

               Cow position:
               chr1:102813323-102813620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               1-322
               

               Cow position:
               chr1:57569094-57569404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               23, 44
               

               Conread position:
               1-360
               

               Cow position:
               chr1:30519723-30520070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 41
               

               Conread position:
               1-386
               

               Cow position:
               chr1:24652404-24652766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-386
               

               Cow position:
               chr1:31417372-31417008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 40
               

               Conread position:
               1-396
               

               Cow position:
               chr1:57697034-57696651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               1-400
               

               Cow position:
               chr1:81777560-81777942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               287, 33
               

               Conread position:
               1-430
               

               Cow position:
               chr1:86611262-86611675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               1-437
               

               Cow position:
               chr1:89495091-89494660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               302
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               63, 28
               

               Conread position:
               1-452
               

               Cow position:
               chr1:26517761-26517324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-452
               

               Cow position:
               chr1:73069941-73069493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               1-452
               

               Cow position:
               chr1:81841343-81840919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               115, 152
               

               Conread position:
               1-452
               

               Cow position:
               chr1:99018881-99018459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               1-454
               

               Cow position:
               chr1:55155875-55155444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               311
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               66, 41
               

               Conread position:
               1-455
               

               Cow position:
               chr1:33713195-33713639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:3934132-3933688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr1:5503094-5503533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr1:12061086-12060637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 45
               

               Conread position:
               1-456
               

               Cow position:
               chr1:25551087-25551533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 150
               

               Conread position:
               1-456
               

               Cow position:
               chr1:28874207-28874636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:30533895-30533455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:32566796-32566355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr1:34693810-34694257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:40511885-40511452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:49973059-49972604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 151
               

               Conread position:
               1-456
               

               Cow position:
               chr1:55320951-55320504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 56
               

               Conread position:
               1-456
               

               Cow position:
               chr1:62805045-62804606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr1:65387446-65387881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 58
               

               Conread position:
               1-456
               

               Cow position:
               chr1:69404132-69404569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr1:72185756-72185311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:88131912-88132345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 41
               

               Conread position:
               1-456
               

               Cow position:
               chr1:91891995-91891550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr1:93855643-93856083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 9
               

               Conread position:
               1-456
               

               Cow position:
               chr1:102433915-102433471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               1-589
               

               Cow position:
               chr1:7409259-7408712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               382
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               1-590
               

               Cow position:
               chr1:30063492-30064060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 46
               

               Conread position:
               1-590
               

               Cow position:
               chr1:99914552-99915123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               2-382
               

               Cow position:
               chr1:31359536-31359899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               2-452
               

               Cow position:
               chr1:47162503-47162069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 145
               

               Conread position:
               2-456
               

               Cow position:
               chr1:13581853-13581419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 39
               

               Conread position:
               3-456
               

               Cow position:
               chr1:73197896-73197463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 38
               

               Conread position:
               6-456
               

               Cow position:
               chr1:56193036-56192595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 131
               

               Conread position:
               6-456
               

               Cow position:
               chr1:63604641-63604202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               6-456
               

               Cow position:
               chr1:72081907-72082326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 28
               

               Conread position:
               6-456
               

               Cow position:
               chr1:76750835-76750403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 39
               

               Conread position:
               7-452
               

               Cow position:
               chr1:79455822-79455388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               7-452
               

               Cow position:
               chr1:82923022-82922598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 144
               

               Conread position:
               8-278
               

               Cow position:
               chr1:92638698-92638962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-278
               

               Cow position:
               chr1:92655080-92655344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-397
               

               Cow position:
               chr1:89430005-89430382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               58, 21
               

               Conread position:
               8-452
               

               Cow position:
               chr1:5356260-5356693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 32
               

               Conread position:
               8-452
               

               Cow position:
               chr1:80358037-80357605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               303
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               111, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:4209339-4209777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:20525610-20526048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:29363434-29363864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:33897391-33897829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               8-456
               

               Cow position:
               chr1:39544925-39545356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:40683609-40683173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               8-456
               

               Cow position:
               chr1:57423701-57423263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               8-456
               

               Cow position:
               chr1:69767711-69768149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:85792812-85793250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr1:86595361-86594925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               9-357
               

               Cow position:
               chr1:41288195-41288535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               94, 33
               

               Conread position:
               10-432
               

               Cow position:
               chr1:39539816-39539418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               159, 53
               

               Conread position:
               12-456
               

               Cow position:
               chr1:24443222-24442792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               293
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               282, 31
               

               Conread position:
               12-456
               

               Cow position:
               chr1:31364961-31364534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               12-456
               

               Cow position:
               chr1:52358122-52357690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 33
               

               Conread position:
               12-456
               

               Cow position:
               chr1:62243508-62243084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 22
               

               Conread position:
               12-456
               

               Cow position:
               chr1:68606405-68605978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 31
               

               Conread position:
               12-458
               

               Cow position:
               chr1:17940636-17940199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               13-456
               

               Cow position:
               chr1:17011596-17011166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               14-456
               

               Cow position:
               chr1:55275892-55275461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 21
               

               Conread position:
               17-452
               

               Cow position:
               chr1:53199685-53200110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr1:20830033-20830464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr1:22619496-22619102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               295
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               224, 17
               

               Conread position:
               17-456
               

               Cow position:
               chr1:33852418-33852838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr1:40056246-40056673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr1:82912007-82911585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               132, 24
               

               Conread position:
               28-456
               

               Cow position:
               chr1:42737599-42737999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 17
               

               Conread position:
               28-456
               

               Cow position:
               chr1:72984636-72985039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 39
               

               Conread position:
               38-387
               

               Cow position:
               chr1:58177946-58177626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               253, 31
               

               Conread position:
               47-456
               

               Cow position:
               chr1:29035451-29035869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 104
               

               Conread position:
               52-432
               

               Cow position:
               chr1:46836796-46837172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               279
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               16, 73
               

               Conread position:
               59-385
               

               Cow position:
               chr1:13573758-13574077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               17, 43
               

               Conread position:
               62-423
               

               Cow position:
               chr1:41519574-41519236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               174, 34
               

               Conread position:
               63-428
               

               Cow position:
               chr1:38417325-38417675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               53, 59
               

               Conread position:
               63-456
               

               Cow position:
               chr1:51965464-51965842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 79
               

               Conread position:
               75-594
               

               Cow position:
               chr1:3384744-3384253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               346
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               300, 40
               

               Conread position:
               85-456
               

               Cow position:
               chr1:18193104-18193466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 49
               

               Conread position:
               86-452
               

               Cow position:
               chr1:89733281-89732948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               20, 66
               

               Conread position:
               92-456
               

               Cow position:
               chr1:77922922-77923277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               87, 92
               

               Conread position:
               108-402
               

               Cow position:
               chr1:77380107-77379804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               94, 18
               

               Conread position:
               113-456
               

               Cow position:
               chr1:76620225-76619910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               115-461
               

               Cow position:
               chr1:93235939-93236266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 35
               

               Conread position:
               118-454
               

               Cow position:
               chr1:67909786-67910114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               82, 32
               

               Conread position:
               138-456
               

               Cow position:
               chr1:80445412-80445720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               41, 12
               

               Conread position:
               139-456
               

               Cow position:
               chr1:71561496-71561176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               89, 63
               

               Conread position:
               175-458
               

               Cow position:
               chr1:76703009-76702737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               41, 27
               

               Conread position:
               186-456
               

               Cow position:
               chr1:56143048-56142775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               187-387
               

               Cow position:
               chr1:45018337-45018137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               110, 122
               

               Conread position:
               191-431
               

               Cow position:
               chr1:61590884-61590654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               195-371
               

               Cow position:
               chr1:29607971-29607793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               93, 39
               

               Conread position:
               200-397
               

               Cow position:
               chr1:91529344-91529144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               9, 96
               

               Conread position:
               202-456
               

               Cow position:
               chr1:74285362-74285110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               92, 200
               

               Conread position:
               204-396
               

               Cow position:
               chr1:91446764-91446955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               204-397
               

               Cow position:
               chr1:64697026-64697218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               83, 13
               

               Conread position:
               204-456
               

               Cow position:
               chr1:87969638-87969884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               81, 49
               

               Conread position:
               205-456
               

               Cow position:
               chr1:9379201-9378949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               20, 202
               

               Conread position:
               205-456
               

               Cow position:
               chr1:10723896-10724150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 124
               

               Conread position:
               205-456
               

               Cow position:
               chr1:59207761-59207510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               23, 59
               

               Conread position:
               205-456
               

               Cow position:
               chr1:67002472-67002724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               20, 205
               

               Conread position:
               208-428
               

               Cow position:
               chr1:81862662-81862440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               80, 140
               

               Conread position:
               208-430
               

               Cow position:
               chr1:50248384-50248155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 192
               

               Conread position:
               211-456
               

               Cow position:
               chr1:30074198-30074437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               211-592
               

               Cow position:
               chr1:18026438-18026066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               31, 135
               

               Conread position:
               213-452
               

               Cow position:
               chr1:21998091-21997852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 170
               

               Conread position:
               214-456
               

               Cow position:
               chr1:50210516-50210273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               81, 191
               

               Conread position:
               220-456
               

               Cow position:
               chr1:57365010-57364777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               69, 17
               

               Conread position:
               222-387
               

               Cow position:
               chr1:91079555-91079391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               68, 58
               

               Conread position:
               239-456
               

               Cow position:
               chr1:90607527-90607309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               50, 171
               

               Conread position:
               290-456
               

               Cow position:
               chr1:82565517-82565682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               85, 113
               

               Conread position:
               1-311
               

               Cow position:
               chr10:17433503-17433803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-373
               

               Cow position:
               chr10:48397950-48397595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               1-386
               

               Cow position:
               chr10:20382863-20382508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               138, 84
               

               Conread position:
               1-390
               

               Cow position:
               chr10:64146077-64146452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 41
               

               Conread position:
               1-395
               

               Cow position:
               chr10:39778963-39778588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 40
               

               Conread position:
               1-397
               

               Cow position:
               chr10:29631653-29631263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               1-402
               

               Cow position:
               chr10:24311217-24310844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 41
               

               Conread position:
               1-421
               

               Cow position:
               chr10:19544231-19543836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               126, 27
               

               Conread position:
               1-428
               

               Cow position:
               chr10:53321249-53320833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 152
               

               Conread position:
               1-429
               

               Cow position:
               chr10:14334699-14334270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-437
               

               Cow position:
               chr10:22583871-22583445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               1-437
               

               Cow position:
               chr10:51782263-51781840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               1-451
               

               Cow position:
               chr10:39878282-39877836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 40
               

               Conread position:
               1-452
               

               Cow position:
               chr10:38344210-38343779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr10:2119867-2119420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr10:10583263-10583713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr10:14853008-14853442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 63
               

               Conread position:
               1-456
               

               Cow position:
               chr10:20375686-20375254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 130
               

               Conread position:
               1-456
               

               Cow position:
               chr10:21488112-21488547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr10:21883930-21884368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               82, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr10:24976624-24976216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               1-456
               

               Cow position:
               chr10:29011506-29011077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 11
               

               Conread position:
               1-456
               

               Cow position:
               chr10:29845498-29845068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr10:39040148-39039715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr10:62407632-62407191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 134
               

               Conread position:
               1-460
               

               Cow position:
               chr10:57988845-57988401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 33
               

               Conread position:
               1-531
               

               Cow position:
               chr10:50135716-50136229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 136
               

               Conread position:
               2-387
               

               Cow position:
               chr10:14842933-14843287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               359, 32
               

               Conread position:
               2-423
               

               Cow position:
               chr10:44102301-44102693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               291
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               407, 39
               

               Conread position:
               5-597
               

               Cow position:
               chr10:42641746-42642304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               6-456
               

               Cow position:
               chr10:1378657-1379087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 28
               

               Conread position:
               6-456
               

               Cow position:
               chr10:7280951-7280514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 39
               

               Conread position:
               7-450
               

               Cow position:
               chr10:126440-126869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               7-456
               

               Cow position:
               chr10:30684341-30683900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 144
               

               Conread position:
               7-456
               

               Cow position:
               chr10:44708459-44708019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 34
               

               Conread position:
               8-456
               

               Cow position:
               chr10:7897329-7896890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr10:19840838-19841270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr10:28642690-28643131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr10:39815244-39814807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               8-456
               

               Cow position:
               chr10:41568254-41568692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr10:57556182-57555744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-595
               

               Cow position:
               chr10:28256260-28255699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               9-390
               

               Cow position:
               chr10:28946638-28947002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 107
               

               Conread position:
               9-452
               

               Cow position:
               chr10:40398159-40398575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 31
               

               Conread position:
               14-433
               

               Cow position:
               chr10:11684472-11684060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 27
               

               Conread position:
               16-456
               

               Cow position:
               chr10:55094432-55094857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 18
               

               Conread position:
               17-373
               

               Cow position:
               chr10:51774043-51773706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               17-426
               

               Cow position:
               chr10:14862846-14863217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               294
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               51, 30
               

               Conread position:
               17-452
               

               Cow position:
               chr10:36469285-36468879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 25
               

               Conread position:
               17-456
               

               Cow position:
               chr10:19495126-19494698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr10:21399516-21399092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr10:21739584-21739164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr10:41878085-41878515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               19-472
               

               Cow position:
               chr10:11821910-11822356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 22
               

               Conread position:
               20-335
               

               Cow position:
               chr10:55285126-55285430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 131
               

               Conread position:
               20-455
               

               Cow position:
               chr10:57501974-57502389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 131
               

               Conread position:
               28-549
               

               Cow position:
               chr10:19512754-19513274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 17
               

               Conread position:
               29-456
               

               Cow position:
               chr10:14805019-14805437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 134
               

               Conread position:
               29-456
               

               Cow position:
               chr10:33870459-33870876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 121
               

               Conread position:
               29-456
               

               Cow position:
               chr10:39180972-39181387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 46
               

               Conread position:
               52-456
               

               Cow position:
               chr10:38722319-38722686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               16, 60
               

               Conread position:
               63-456
               

               Cow position:
               chr10:16477970-16478333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               76, 62
               

               Conread position:
               70-456
               

               Cow position:
               chr10:37771101-37771475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 80
               

               Conread position:
               77-387
               

               Cow position:
               chr10:29101495-29101202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               211, 46
               

               Conread position:
               111-380
               

               Cow position:
               chr10:6538643-6538910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               118, 39
               

               Conread position:
               142-398
               

               Cow position:
               chr10:19721810-19721561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               199, 30
               

               Conread position:
               143-456
               

               Cow position:
               chr10:25652142-25651838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               37, 41
               

               Conread position:
               146-456
               

               Cow position:
               chr10:68160346-68160046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               149, 44
               

               Conread position:
               182-456
               

               Cow position:
               chr10:53485913-53485643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               41, 18
               

               Conread position:
               187-390
               

               Cow position:
               chr10:487011-486802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               21, 15
               

               Conread position:
               198-396
               

               Cow position:
               chr10:28530132-28529941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               204-456
               

               Cow position:
               chr10:19706297-19706046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               84, 19
               

               Conread position:
               205-456
               

               Cow position:
               chr10:10172070-10172326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               20, 204
               

               Conread position:
               205-456
               

               Cow position:
               chr10:16927001-16927260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               205-456
               

               Cow position:
               chr10:29109636-29109395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               170, 33
               

               Conread position:
               209-452
               

               Cow position:
               chr10:32430058-32430301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               17, 184
               

               Conread position:
               212-456
               

               Cow position:
               chr10:8291394-8291637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               77, 16
               

               Conread position:
               213-428
               

               Cow position:
               chr10:46196421-46196617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               162, 20
               

               Conread position:
               220-456
               

               Cow position:
               chr10:46192500-46192732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               224-456
               

               Cow position:
               chr10:22346320-22346551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               65, 22
               

               Conread position:
               231-452
               

               Cow position:
               chr10:58376932-58376721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               161, 48
               

               Conread position:
               257-456
               

               Cow position:
               chr10:39439544-39439743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 14
               

               Conread position:
               475-595
               

               Cow position:
               chr10:24976227-24976099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-349
               

               Cow position:
               chr11:4056701-4056377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               336, 43
               

               Conread position:
               1-358
               

               Cow position:
               chr11:17795689-17795324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               1-396
               

               Cow position:
               chr11:21890190-21889830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               57, 40
               

               Conread position:
               1-397
               

               Cow position:
               chr11:50016216-50015830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               1-402
               

               Cow position:
               chr11:28391749-28392142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 80
               

               Conread position:
               1-436
               

               Cow position:
               chr11:66729882-66730297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-452
               

               Cow position:
               chr11:11988922-11989359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 43
               

               Conread position:
               1-452
               

               Cow position:
               chr11:26548304-26548756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-452
               

               Cow position:
               chr11:38834648-38834221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:10848237-10848683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr11:19101708-19101263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr11:23880817-23881258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:24394100-24394545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:26124140-26123696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:29667819-29667367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:30123052-30122614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr11:41169907-41169465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr11:42311654-42311214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               318
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               19, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr11:44156460-44156031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1-456
               

               Cow position:
               chr11:44582548-44582112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:49039598-49039150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               305
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr11:71330382-71330830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr11:87142368-87142812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 28
               

               Conread position:
               1-468
               

               Cow position:
               chr11:4269615-4269157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               2-456
               

               Cow position:
               chr11:10883094-10883519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               312
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               49, 39
               

               Conread position:
               2-456
               

               Cow position:
               chr11:45921821-45921378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               3-369
               

               Cow position:
               chr11:59038983-59038640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               240
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               303, 17
               

               Conread position:
               3-386
               

               Cow position:
               chr11:41190197-41190569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 132
               

               Conread position:
               3-396
               

               Cow position:
               chr11:80473480-80473111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               372, 26
               

               Conread position:
               6-389
               

               Cow position:
               chr11:15535267-15535628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               200, 53
               

               Conread position:
               6-456
               

               Cow position:
               chr11:4026818-4026381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 37
               

               Conread position:
               6-456
               

               Cow position:
               chr11:58135188-58135625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               7-383
               

               Cow position:
               chr11:52314752-52314395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               62, 34
               

               Conread position:
               7-444
               

               Cow position:
               chr11:26564294-26563887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               300
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               58, 19
               

               Conread position:
               7-452
               

               Cow position:
               chr11:53431257-53430809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               7-456
               

               Cow position:
               chr11:9156358-9155921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 146
               

               Conread position:
               7-456
               

               Cow position:
               chr11:20733443-20733004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 34
               

               Conread position:
               8-388
               

               Cow position:
               chr11:47759487-47759116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 127
               

               Conread position:
               8-456
               

               Cow position:
               chr11:17106889-17106451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr11:17546956-17547388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr11:29613200-29612764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               8-456
               

               Cow position:
               chr11:32452621-32453062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr11:57627259-57626821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr11:63654539-63654103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               8-456
               

               Cow position:
               chr11:67451289-67451723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               9-351
               

               Cow position:
               chr11:50042341-50042023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               47, 32
               

               Conread position:
               9-452
               

               Cow position:
               chr11:32251637-32251222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               289
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               12-456
               

               Cow position:
               chr11:72310236-72309807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               13-395
               

               Cow position:
               chr11:21899044-21898673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 46
               

               Conread position:
               14-390
               

               Cow position:
               chr11:33977657-33977290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               53, 137
               

               Conread position:
               14-436
               

               Cow position:
               chr11:52420202-52420613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 27
               

               Conread position:
               16-387
               

               Cow position:
               chr11:64355625-64355977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               100, 53
               

               Conread position:
               16-389
               

               Cow position:
               chr11:2882610-2882261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               16-594
               

               Cow position:
               chr11:12357612-12357054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 18
               

               Conread position:
               17-456
               

               Cow position:
               chr11:28228963-28228537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr11:44518062-44517635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-550
               

               Cow position:
               chr11:49553372-49552852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 94
               

               Conread position:
               27-456
               

               Cow position:
               chr11:26070236-26069811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 7
               

               Conread position:
               28-435
               

               Cow position:
               chr11:35504392-35504002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               276
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               28-452
               

               Cow position:
               chr11:85393016-85392607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 126
               

               Conread position:
               34-426
               

               Cow position:
               chr11:21011515-21011130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               35-437
               

               Cow position:
               chr11:75554179-75553798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               28, 117
               

               Conread position:
               55-503
               

               Cow position:
               chr11:59628738-59628307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 88
               

               Conread position:
               63-456
               

               Cow position:
               chr11:67845722-67845341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 87
               

               Conread position:
               82-595
               

               Cow position:
               chr11:18070070-18069592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               467, 68
               

               Conread position:
               87-397
               

               Cow position:
               chr11:63275527-63275230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               206, 38
               

               Conread position:
               94-456
               

               Cow position:
               chr11:54216379-54216029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               193, 56
               

               Conread position:
               104-456
               

               Cow position:
               chr11:27657335-27657658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               188, 46
               

               Conread position:
               141-452
               

               Cow position:
               chr11:54484361-54484056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               183-400
               

               Cow position:
               chr11:46779891-46779672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               46, 17
               

               Conread position:
               194-450
               

               Cow position:
               chr11:75357196-75357456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 38
               

               Conread position:
               197-492
               

               Cow position:
               chr11:36763912-36764211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               104, 77
               

               Conread position:
               202-456
               

               Cow position:
               chr11:28053667-28053411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               205-360
               

               Cow position:
               chr11:21444441-21444597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               209-456
               

               Cow position:
               chr11:44231445-44231696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               15, 178
               

               Conread position:
               211-389
               

               Cow position:
               chr11:1489183-1489003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               211-396
               

               Cow position:
               chr11:28421106-28421288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               80, 40
               

               Conread position:
               211-442
               

               Cow position:
               chr11:2833313-2833544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               80, 201
               

               Conread position:
               211-456
               

               Cow position:
               chr11:25865851-25865614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 55
               

               Conread position:
               211-456
               

               Cow position:
               chr11:27669005-27668764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 50
               

               Conread position:
               231-456
               

               Cow position:
               chr11:30208141-30208362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               57, 73
               

               Conread position:
               254-466
               

               Cow position:
               chr11:13064952-13064743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               179, 46
               

               Conread position:
               1-389
               

               Cow position:
               chr12:33119226-33119618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               38, 120
               

               Conread position:
               1-417
               

               Cow position:
               chr12:48471804-48471398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-452
               

               Cow position:
               chr12:11099296-11099740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-452
               

               Cow position:
               chr12:22204668-22204198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               312
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               1-452
               

               Cow position:
               chr12:42858463-42858021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr12:1403568-1404019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               1-456
               

               Cow position:
               chr12:8677022-8676572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr12:21209721-21210182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               310
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr12:25099999-25099551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr12:27931830-27931391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr12:32654620-32655069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               314
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-593
               

               Cow position:
               chr12:17979804-17980349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 50
               

               Conread position:
               1-594
               

               Cow position:
               chr12:3209028-3209604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               394
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               77, 40
               

               Conread position:
               2-247
               

               Cow position:
               chr12:35313317-35313089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               137, 39
               

               Conread position:
               3-277
               

               Cow position:
               chr12:38345336-38345070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               7-456
               

               Cow position:
               chr12:27854884-27854447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               8-342
               

               Cow position:
               chr12:21387162-21386837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-397
               

               Cow position:
               chr12:31202408-31202024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               8-452
               

               Cow position:
               chr12:21942821-21943257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               12-549
               

               Cow position:
               chr12:600275-599769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               363, 33
               

               Conread position:
               14-437
               

               Cow position:
               chr12:3362025-3362441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 171
               

               Conread position:
               17-452
               

               Cow position:
               chr12:37560098-37560527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               18-456
               

               Cow position:
               chr12:1888468-1888041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 11
               

               Conread position:
               22-427
               

               Cow position:
               chr12:7863781-7863384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               17, 112
               

               Conread position:
               29-387
               

               Cow position:
               chr12:349508-349850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               240, 21
               

               Conread position:
               30-456
               

               Cow position:
               chr12:35345652-35346048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               94-456
               

               Cow position:
               chr12:14661183-14660832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               150-456
               

               Cow position:
               chr12:21429222-21429526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               205-456
               

               Cow position:
               chr12:34174380-34174635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               20, 208
               

               Conread position:
               256-456
               

               Cow position:
               chr12:24994646-24994445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               39, 149
               

               Conread position:
               1-387
               

               Cow position:
               chr13:32546245-32546622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-397
               

               Cow position:
               chr13:15519651-15519282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               278
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               66, 49
               

               Conread position:
               1-397
               

               Cow position:
               chr13:30654524-30654157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               285
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               66, 41
               

               Conread position:
               1-450
               

               Cow position:
               chr13:43590185-43590611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 42
               

               Conread position:
               1-452
               

               Cow position:
               chr13:34030476-34030898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               301
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               1-452
               

               Cow position:
               chr13:48358499-48358922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 71
               

               Conread position:
               1-456
               

               Cow position:
               chr13:4942238-4942683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr13:9045625-9046052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1-456
               

               Cow position:
               chr13:14177983-14177556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr13:14402242-14401810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr13:15543396-15543838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr13:25692537-25692971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 46
               

               Conread position:
               1-456
               

               Cow position:
               chr13:31555888-31555461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 184
               

               Conread position:
               1-456
               

               Cow position:
               chr13:31611452-31611013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr13:31730040-31729594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr13:34041481-34041036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               1-456
               

               Cow position:
               chr13:43982242-43981789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 25
               

               Conread position:
               1-527
               

               Cow position:
               chr13:15923524-15923008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 33
               

               Conread position:
               1-555
               

               Cow position:
               chr13:30239178-30239699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               378, 25
               

               Conread position:
               3-294
               

               Cow position:
               chr13:6526575-6526855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               33, 9
               

               Conread position:
               3-383
               

               Cow position:
               chr13:28347394-28347030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               66, 39
               

               Conread position:
               7-433
               

               Cow position:
               chr13:34019853-34019463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               376, 61
               

               Conread position:
               7-456
               

               Cow position:
               chr13:6667271-6666841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 36
               

               Conread position:
               7-456
               

               Cow position:
               chr13:13900729-13901166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               8-379
               

               Cow position:
               chr13:47229139-47228775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 155
               

               Conread position:
               8-380
               

               Cow position:
               chr13:17998419-17998782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-437
               

               Cow position:
               chr13:21697114-21697543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-452
               

               Cow position:
               chr13:32984481-32984050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr13:678612-679049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr13:2387946-2387507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr13:11797857-11797409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-559
               

               Cow position:
               chr13:34049604-34050132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               10-456
               

               Cow position:
               chr13:28860027-28860462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 31
               

               Conread position:
               12-450
               

               Cow position:
               chr13:23002143-23001720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 139
               

               Conread position:
               17-367
               

               Cow position:
               chr13:6148095-6148431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               60, 25
               

               Conread position:
               17-456
               

               Cow position:
               chr13:4484666-4485090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 28
               

               Conread position:
               17-456
               

               Cow position:
               chr13:13325800-13326225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 26
               

               Conread position:
               19-428
               

               Cow position:
               chr13:34938324-34938711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               281
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               19-456
               

               Cow position:
               chr13:49974537-49974964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               27-595
               

               Cow position:
               chr13:22184465-22183925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               30-389
               

               Cow position:
               chr13:29517881-29518228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               9, 107
               

               Conread position:
               30-456
               

               Cow position:
               chr13:17309351-17309761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 83
               

               Conread position:
               63-456
               

               Cow position:
               chr13:34342822-34343204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 87
               

               Conread position:
               98-456
               

               Cow position:
               chr13:6358074-6358422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               41, 34
               

               Conread position:
               114-456
               

               Cow position:
               chr13:5501032-5500701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               180, 36
               

               Conread position:
               141-394
               

               Cow position:
               chr13:44697863-44698112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               197, 60
               

               Conread position:
               153-456
               

               Cow position:
               chr13:16253524-16253218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               68, 88
               

               Conread position:
               186-456
               

               Cow position:
               chr13:60648779-60648507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               23, 133
               

               Conread position:
               191-456
               

               Cow position:
               chr13:42217655-42217384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               6, 57
               

               Conread position:
               207-396
               

               Cow position:
               chr13:26777183-26777374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 129
               

               Conread position:
               225-456
               

               Cow position:
               chr13:60468492-60468724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               70, 185
               

               Conread position:
               232-456
               

               Cow position:
               chr13:47575160-47575390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               159, 92
               

               Conread position:
               233-456
               

               Cow position:
               chr13:33524877-33524658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               1-275
               

               Cow position:
               chr14:13028026-13028282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               1-315
               

               Cow position:
               chr14:12742338-12742032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-372
               

               Cow position:
               chr14:48826017-48826368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               1-398
               

               Cow position:
               chr14:40341783-40342181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 143
               

               Conread position:
               1-428
               

               Cow position:
               chr14:43555708-43556122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 28
               

               Conread position:
               1-430
               

               Cow position:
               chr14:33677800-33678210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-442
               

               Cow position:
               chr14:30595639-30595193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-452
               

               Cow position:
               chr14:16272562-16272126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-452
               

               Cow position:
               chr14:29224348-29223915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               301
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               289, 41
               

               Conread position:
               1-452
               

               Cow position:
               chr14:45710993-45710559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr14:751296-751740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               1-456
               

               Cow position:
               chr14:7473092-7473525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               288, 21
               

               Conread position:
               1-456
               

               Cow position:
               chr14:11153422-11152979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               1-456
               

               Cow position:
               chr14:13779668-13780125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr14:13863360-13862924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr14:16918988-16918542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr14:17000329-16999884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 149
               

               Conread position:
               1-456
               

               Cow position:
               chr14:19327532-19327089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr14:45678349-45677914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr14:50111525-50111977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               1-458
               

               Cow position:
               chr14:22030715-22030274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-458
               

               Cow position:
               chr14:44552582-44553014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-481
               

               Cow position:
               chr14:30705583-30705108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               1-496
               

               Cow position:
               chr14:44775307-44774835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 40
               

               Conread position:
               2-316
               

               Cow position:
               chr14:13620410-13620107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               67, 41
               

               Conread position:
               2-404
               

               Cow position:
               chr14:29580897-29581286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               61, 32
               

               Conread position:
               2-456
               

               Cow position:
               chr14:48402418-48401992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 38
               

               Conread position:
               3-452
               

               Cow position:
               chr14:18105177-18105593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               299
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               68, 38
               

               Conread position:
               4-429
               

               Cow position:
               chr14:9514545-9514153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 46
               

               Conread position:
               5-456
               

               Cow position:
               chr14:21744839-21745258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               311
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               280, 36
               

               Conread position:
               6-425
               

               Cow position:
               chr14:44689805-44690213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 37
               

               Conread position:
               6-450
               

               Cow position:
               chr14:45081789-45082222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 37
               

               Conread position:
               6-451
               

               Cow position:
               chr14:13274345-13274774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 36
               

               Conread position:
               6-452
               

               Cow position:
               chr14:50139296-50139735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               8-456
               

               Cow position:
               chr14:1659192-1659628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr14:27978097-27978529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               12-382
               

               Cow position:
               chr14:13462262-13462622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               55, 26
               

               Conread position:
               12-417
               

               Cow position:
               chr14:46466425-46466803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               12-430
               

               Cow position:
               chr14:29775341-29774947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               294
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               48, 144
               

               Conread position:
               12-452
               

               Cow position:
               chr14:48253571-48253148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               14-424
               

               Cow position:
               chr14:48601594-48601201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               295
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               25, 82
               

               Conread position:
               17-456
               

               Cow position:
               chr14:10147619-10148048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr14:12124438-12124009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               17-456
               

               Cow position:
               chr14:13303706-13304126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 12
               

               Conread position:
               17-456
               

               Cow position:
               chr14:45671301-45670862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               18-452
               

               Cow position:
               chr14:5513684-5514099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 27
               

               Conread position:
               24-320
               

               Cow position:
               chr14:34102360-34102654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               24-362
               

               Cow position:
               chr14:32043895-32044217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               114, 42
               

               Conread position:
               28-444
               

               Cow position:
               chr14:43558993-43559398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               30-456
               

               Cow position:
               chr14:20783213-20783641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 120
               

               Conread position:
               34-398
               

               Cow position:
               chr14:30762112-30761761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 28
               

               Conread position:
               34-437
               

               Cow position:
               chr14:5074715-5075107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               268
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               30, 149
               

               Conread position:
               36-456
               

               Cow position:
               chr14:38147770-38148163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 37
               

               Conread position:
               62-387
               

               Cow position:
               chr14:2951769-2951467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               64-451
               

               Cow position:
               chr14:15275057-15274670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 86
               

               Conread position:
               65-452
               

               Cow position:
               chr14:5529855-5530227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               263
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               197, 137
               

               Conread position:
               75-456
               

               Cow position:
               chr14:17687308-17687670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 58
               

               Conread position:
               75-456
               

               Cow position:
               chr14:38814677-38814320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 49
               

               Conread position:
               76-396
               

               Cow position:
               chr14:34861272-34861560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               76-456
               

               Cow position:
               chr14:23256550-23256188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               80-456
               

               Cow position:
               chr14:190852-191218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 71
               

               Conread position:
               99-319
               

               Cow position:
               chr14:33240292-33240497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               162-397
               

               Cow position:
               chr14:45207170-45207404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 44
               

               Conread position:
               180-456
               

               Cow position:
               chr14:32447858-32448127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               186-383
               

               Cow position:
               chr14:24996692-24996492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               186-409
               

               Cow position:
               chr14:28244770-28244545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               108, 23
               

               Conread position:
               202-383
               

               Cow position:
               chr14:2295192-2295373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               138, 29
               

               Conread position:
               204-431
               

               Cow position:
               chr14:46402899-46403123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               15, 79
               

               Conread position:
               205-437
               

               Cow position:
               chr14:31882377-31882613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 188
               

               Conread position:
               205-456
               

               Cow position:
               chr14:30583676-30583425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               208-427
               

               Cow position:
               chr14:30666399-30666620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               83, 12
               

               Conread position:
               210-402
               

               Cow position:
               chr14:44292137-44292333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               210-456
               

               Cow position:
               chr14:44289992-44290237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               78, 198
               

               Conread position:
               246-458
               

               Cow position:
               chr14:9521754-9521541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               14, 26
               

               Conread position:
               1-265
               

               Cow position:
               chr15:6386609-6386359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               138, 25
               

               Conread position:
               1-295
               

               Cow position:
               chr15:32720012-32719718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-348
               

               Cow position:
               chr15:2674916-2674588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               62, 33
               

               Conread position:
               1-387
               

               Cow position:
               chr15:6067447-6067083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 41
               

               Conread position:
               1-396
               

               Cow position:
               chr15:6079485-6079862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-425
               

               Cow position:
               chr15:53409647-53410054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               280
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               293, 40
               

               Conread position:
               1-432
               

               Cow position:
               chr15:20355870-20355443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-432
               

               Cow position:
               chr15:41357901-41358304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-439
               

               Cow position:
               chr15:4915924-4916328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 33
               

               Conread position:
               1-441
               

               Cow position:
               chr15:6383441-6382997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-444
               

               Cow position:
               chr15:1299829-1299388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 151
               

               Conread position:
               1-445
               

               Cow position:
               chr15:13074738-13075166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               196, 28
               

               Conread position:
               1-452
               

               Cow position:
               chr15:3260587-3260153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 33
               

               Conread position:
               1-452
               

               Cow position:
               chr15:6485315-6485746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 25
               

               Conread position:
               1-454
               

               Cow position:
               chr15:18577444-18577882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr15:4386492-4386928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 28
               

               Conread position:
               1-456
               

               Cow position:
               chr15:4672171-4672605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 39
               

               Conread position:
               1-456
               

               Cow position:
               chr15:4922877-4923317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr15:4962369-4962801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               313
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               1-456
               

               Cow position:
               chr15:7837994-7838440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr15:8058690-8059135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 132
               

               Conread position:
               1-456
               

               Cow position:
               chr15:15346380-15345937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr15:21665011-21664568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               1-456
               

               Cow position:
               chr15:24718066-24718498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 33
               

               Conread position:
               1-456
               

               Cow position:
               chr15:35752586-35752134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               1-594
               

               Cow position:
               chr15:4678990-4679565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 44
               

               Conread position:
               1-594
               

               Cow position:
               chr15:4950797-4951388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               406
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               1-594
               

               Cow position:
               chr15:7545597-7546160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               391
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               288, 33
               

               Conread position:
               2-456
               

               Cow position:
               chr15:16287202-16286775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               16, 42
               

               Conread position:
               3-337
               

               Cow position:
               chr15:46052418-46052740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               63, 37
               

               Conread position:
               5-389
               

               Cow position:
               chr15:51675452-51675823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               5-451
               

               Cow position:
               chr15:4927111-4927536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 7
               

               Conread position:
               5-452
               

               Cow position:
               chr15:1238402-1238852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 146
               

               Conread position:
               6-394
               

               Cow position:
               chr15:50253568-50253943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               270
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               67, 35
               

               Conread position:
               6-422
               

               Cow position:
               chr15:17148861-17149259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 23
               

               Conread position:
               6-452
               

               Cow position:
               chr15:4652098-4652537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               70, 39
               

               Conread position:
               6-456
               

               Cow position:
               chr15:31359617-31360035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 28
               

               Conread position:
               6-459
               

               Cow position:
               chr15:38981464-38981907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 16
               

               Conread position:
               7-456
               

               Cow position:
               chr15:18332091-18331662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 137
               

               Conread position:
               8-438
               

               Cow position:
               chr15:35646938-35646525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               8-456
               

               Cow position:
               chr15:2646916-2646478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr15:3009104-3008671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               8-456
               

               Cow position:
               chr15:4197201-4197638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               8-456
               

               Cow position:
               chr15:5010894-5010460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               301
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               10-456
               

               Cow position:
               chr15:1765041-1765489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 18
               

               Conread position:
               12-456
               

               Cow position:
               chr15:2013308-2013730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 30
               

               Conread position:
               12-594
               

               Cow position:
               chr15:6553077-6552493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 50
               

               Conread position:
               14-466
               

               Cow position:
               chr15:1782980-1783423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 28
               

               Conread position:
               16-452
               

               Cow position:
               chr15:20750138-20750558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 24
               

               Conread position:
               17-433
               

               Cow position:
               chr15:1773246-1773652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               17-456
               

               Cow position:
               chr15:4765933-4766362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               17-456
               

               Cow position:
               chr15:6155196-6154755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               17-456
               

               Cow position:
               chr15:19737307-19736884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 28
               

               Conread position:
               17-456
               

               Cow position:
               chr15:50123186-50122760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               22-286
               

               Cow position:
               chr15:10478922-10478672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               22-386
               

               Cow position:
               chr15:51715666-51716015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               46, 110
               

               Conread position:
               24-456
               

               Cow position:
               chr15:14581608-14581192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 19
               

               Conread position:
               30-456
               

               Cow position:
               chr15:2763564-2763966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               114, 51
               

               Conread position:
               30-458
               

               Cow position:
               chr15:4823227-4823629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 121
               

               Conread position:
               36-386
               

               Cow position:
               chr15:53299234-53299572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               12, 77
               
38-456UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr15:9912462-9912060 (view  custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 115
               
39-427UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:580199-580570 (view  custom track)

               
               
               
Alignm length: 394

               
               
               
Alignm identity: 279

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 28, 94
40-424UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:24794592-24794965 (view  custom track)

               
               
               
Alignm length: 395

               
               
               
Alignm identity: 281

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 40, 7

               
               
               Conread position:47-383
               
               
               Cow position:chr15:31860442-31860109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:48-430
               
               
               Cow position:chr15:611523-611148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:51-438
               
               
               Cow position:chr15:3182285-3181906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:70-428
               
               
               Cow position:chr15:7235048-7235399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:72-422
               
               
               Cow position:chr15:12026974-12027318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):215, 31

               
               
               Conread position:75-424
               
               
               Cow position:chr15:17217320-17216993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):248, 16

               
               
               Conread position:83-452
               
               
               Cow position:chr15:3777863-3777518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:85-456
               
               
               Cow position:chr15:2901450-2901090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 65

               
               
               Conread position:88-432
               
               
               Cow position:chr15:329147-329482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):201, 62

               
               
               Conread position:91-456
               
               
               Cow position:chr15:25654252-25653895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):198, 59

               
               
               Conread position:107-456
               
               
               Cow position:chr15:18266941-18266604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:112-456
               
               
               Cow position:chr15:7563833-7564168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:115-456
               
               
               Cow position:chr15:4686572-4686900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:127-456
               
               
               Cow position:chr15:20411452-20411769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:143-456
               
               
               Cow position:chr15:4726075-4726373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):144, 47

               
               
               Conread position:169-369
               
               
               Cow position:chr15:13390955-13390757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:186-456
               
               
               Cow position:chr15:17036764-17036486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:202-456
               
               
               Cow position:chr15:51218643-51218895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:204-456
               
               
               Cow position:chr15:9003290-9003052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:205-371
               
               
               Cow position:chr15:23309980-23309818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:205-456
               
               
               Cow position:chr15:6591199-6590945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 204

               
               
               Conread position:205-456
               
               
               Cow position:chr15:11626581-11626838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:209-387
               
               
               Cow position:chr15:20361164-20360986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:211-461
               
               
               Cow position:chr15:26156766-26157010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:218-456
               
               
               Cow position:chr15:523889-523647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:242-451
               
               
               Cow position:chr15:33122334-33122544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:257-456
               
               
               Cow position:chr15:4141763-4141563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:272-456
               
               
               Cow position:chr15:35898790-35898605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:276-456
               
               
               Cow position:chr15:106991-107172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:285-461
               
               
               Cow position:chr15:29343229-29343050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:290-456
               
               
               Cow position:chr15:6561593-6561758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:290-456
               
               
               Cow position:chr15:41659174-41659339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:1-360
               
               
               Cow position:chr16:9209351-9209693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-387
               
               
               Cow position:chr16:19638449-19638816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:1-389
               
               
               Cow position:chr16:15477230-15477604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:1-397
               
               
               Cow position:chr16:3330326-3330710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:1-397
               
               
               Cow position:chr16:46500578-46500971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:1-437
               
               
               Cow position:chr16:17056582-17056163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr16:10438640-10439083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr16:43896886-43896437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:406650-406208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:1-456
               
               
               Cow position:chr16:1567064-1566625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:1860607-1861064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:1-456
               
               
               Cow position:chr16:2410576-2410100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr16:2726841-2726384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:5485119-5485555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:16270753-16270306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:23252049-23251595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:23535502-23535072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:23671086-23671528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr16:23983684-23984129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:25442019-25442458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:27732992-27732553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:29047411-29047851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr16:40295786-40295332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr16:51084539-51084986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:1-590
               
               
               Cow position:chr16:25171736-25172291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:1-595
               
               
               Cow position:chr16:28437090-28436515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:3-371
               
               
               Cow position:chr16:54726972-54727321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:3-443
               
               
               Cow position:chr16:39824326-39824741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:3-451
               
               
               Cow position:chr16:11782006-11781577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:4-452
               
               
               Cow position:chr16:49255829-49255408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:4-594
               
               
               Cow position:chr16:23808726-23809300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:399
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):285, 37

               
               
               Conread position:6-451
               
               
               Cow position:chr16:837713-838142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 37

               
               
               Conread position:6-452
               
               
               Cow position:chr16:31591522-31591094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr16:1432584-1433016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr16:15185465-15185908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:7-456
               
               
               Cow position:chr16:3088807-3088375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 34

               
               
               Conread position:7-456
               
               
               Cow position:chr16:4478576-4478138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:7-456
               
               
               Cow position:chr16:7676063-7675624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 27

               
               
               Conread position:8-380
               
               
               Cow position:chr16:11283987-11284350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-380
               
               
               Cow position:chr16:21186010-21186373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-393
               
               
               Cow position:chr16:26105668-26105277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 163

               
               
               Conread position:8-426
               
               
               Cow position:chr16:25189044-25189444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:8-451
               
               
               Cow position:chr16:37482024-37481606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr16:5662226-5662668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr16:10375204-10374767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:8-456
               
               
               Cow position:chr16:25086011-25086441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:8-456
               
               
               Cow position:chr16:27593902-27594336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr16:28196850-28196412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:12-456
               
               
               Cow position:chr16:2482737-2482306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 31

               
               
               Conread position:18-286
               
               
               Cow position:chr16:20331188-20331456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:19-464
               
               
               Cow position:chr16:25001892-25001453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:28-452
               
               
               Cow position:chr16:5890412-5890825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:29-452
               
               
               Cow position:chr16:25342373-25342796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:30-386
               
               
               Cow position:chr16:27714391-27714063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:30-456
               
               
               Cow position:chr16:25457057-25456652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 15

               
               
               Conread position:37-444
               
               
               Cow position:chr16:19779228-19778832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:48-456
               
               
               Cow position:chr16:34530735-34531127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:72-451
               
               
               Cow position:chr16:16520295-16519946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:76-390
               
               
               Cow position:chr16:38023785-38024087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:76-453
               
               
               Cow position:chr16:48334107-48333748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:85-452
               
               
               Cow position:chr16:51038548-51038888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):138, 83

               
               
               Conread position:88-456
               
               
               Cow position:chr16:28470599-28470241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 62

               
               
               Conread position:94-344
               
               
               Cow position:chr16:25258306-25258540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:112-454
               
               
               Cow position:chr16:40557448-40557118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:115-360
               
               
               Cow position:chr16:25081272-25081521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:115-456
               
               
               Cow position:chr16:19080468-19080799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:144-385
               
               
               Cow position:chr16:25933214-25933458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:183-456
               
               
               Cow position:chr16:52591120-52590852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:193-461
               
               
               Cow position:chr16:41754047-41753776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:202-456
               
               
               Cow position:chr16:41571966-41572218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:202-588
               
               
               Cow position:chr16:39366334-39365935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:205-432
               
               
               Cow position:chr16:1960034-1959810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):170, 71

               
               
               Conread position:205-437
               
               
               Cow position:chr16:32937099-32937332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 207

               
               
               Conread position:209-456
               
               
               Cow position:chr16:16228904-16229146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:211-397
               
               
               Cow position:chr16:10568238-10568418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:211-398
               
               
               Cow position:chr16:41562672-41562860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:211-456
               
               
               Cow position:chr16:7464901-7465146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):21, 198

               
               
               Conread position:213-456
               
               
               Cow position:chr16:5871479-5871716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):162, 63

               
               
               Conread position:224-456
               
               
               Cow position:chr16:5527789-5527556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 190

               
               
               Conread position:231-429
               
               
               Cow position:chr16:37480253-37480053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 180

               
               
               Conread position:1-235
               
               
               Cow position:chr17:22133167-22133378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:1-418
               
               
               Cow position:chr17:19020533-19020938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:1-424
               
               
               Cow position:chr17:1656889-1656490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:1-437
               
               
               Cow position:chr17:6120675-6121095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:1-452
               
               
               Cow position:chr17:1786979-1786565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr17:2078040-2077595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:1-456
               
               
               Cow position:chr17:6069514-6069946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr17:6260820-6261262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr17:11086760-11086324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 66

               
               
               Conread position:1-456
               
               
               Cow position:chr17:14040083-14039632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr17:19267868-19267431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 149

               
               
               Conread position:1-456
               
               
               Cow position:chr17:40805770-40806210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:3-360
               
               
               Cow position:chr17:23919245-23919581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):333, 38

               
               
               Conread position:5-456
               
               
               Cow position:chr17:20099508-20099073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:6-455
               
               
               Cow position:chr17:24029038-24028602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr17:15851653-15852096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:7-433
               
               
               Cow position:chr17:33381601-33381205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):297, 34

               
               
               Conread position:7-456
               
               
               Cow position:chr17:14240465-14240908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:8-402
               
               
               Cow position:chr17:20390120-20389731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-452
               
               
               Cow position:chr17:43989467-43989901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:8-456
               
               
               Cow position:chr17:182542-182976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr17:2247115-2246683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):172, 51

               
               
               Conread position:8-456
               
               
               Cow position:chr17:2263074-2263542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr17:9080455-9080017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr17:14216061-14215623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr17:24783127-24783565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-360
               
               
               Cow position:chr17:42266384-42266709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:9-456
               
               
               Cow position:chr17:3707816-3707386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:10-456
               
               
               Cow position:chr17:15436750-15437187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:14-456
               
               
               Cow position:chr17:11783826-11784261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:17-456
               
               
               Cow position:chr17:15142382-15141952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:17-456
               
               
               Cow position:chr17:23323471-23323045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:17-458
               
               
               Cow position:chr17:2580598-2581027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:18-456
               
               
               Cow position:chr17:33284857-33284450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:30-397
               
               
               Cow position:chr17:20086777-20086421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:35-456
               
               
               Cow position:chr17:39049206-39049618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:37-379
               
               
               Cow position:chr17:2149437-2149754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:52-400
               
               
               Cow position:chr17:14296260-14295921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:59-456
               
               
               Cow position:chr17:21769992-21769603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:79-456
               
               
               Cow position:chr17:23038618-23038966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):296, 22

               
               
               Conread position:112-436
               
               
               Cow position:chr17:14936904-14936588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:191-456
               
               
               Cow position:chr17:28027364-28027101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:202-456
               
               
               Cow position:chr17:3640754-3640502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:205-456
               
               
               Cow position:chr17:2555408-2555156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:212-443
               
               
               Cow position:chr17:4675266-4675494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:214-454
               
               
               Cow position:chr17:1881460-1881693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:221-452
               
               
               Cow position:chr17:1704037-1704270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 228

               
               
               Conread position:224-456
               
               
               Cow position:chr17:733174-732939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 139

               
               
               Conread position:298-456
               
               
               Cow position:chr17:13967173-13967330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:1-383
               
               
               Cow position:chr18:56013750-56014125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:1-451
               
               
               Cow position:chr18:19405401-19404978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-451
               
               
               Cow position:chr18:54170340-54169899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:1-452
               
               
               Cow position:chr18:27837140-27836698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr18:29238068-29238499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr18:14131563-14132002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:14417149-14417578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr18:16089306-16089731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:16175446-16175009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:23798819-23799260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr18:25352426-25352871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:28972714-28972275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr18:29865441-29864999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:41839642-41839198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr18:52652079-52652525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr18:54005002-54004561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-457
               
               
               Cow position:chr18:13139965-13139508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):191, 39

               
               
               Conread position:3-247
               
               
               Cow position:chr18:42515370-42515610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:3-402
               
               
               Cow position:chr18:12237400-12237755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-452
               
               
               Cow position:chr18:29046768-29046350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):213, 38

               
               
               Conread position:4-399
               
               
               Cow position:chr18:8101252-8100859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:8-387
               
               
               Cow position:chr18:16392911-16392552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:8-456
               
               
               Cow position:chr18:19353537-19353978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr18:47742679-47743118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:11-402
               
               
               Cow position:chr18:16276784-16276409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:12-456
               
               
               Cow position:chr18:54022951-54022521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 121

               
               
               Conread position:18-293
               
               
               Cow position:chr18:36255738-36255477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:20-398
               
               
               Cow position:chr18:38343102-38342734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:24-456
               
               
               Cow position:chr18:51482062-51482467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:29-355
               
               
               Cow position:chr18:51661538-51661854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:29-397
               
               
               Cow position:chr18:24574752-24574399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:29-437
               
               
               Cow position:chr18:54271678-54272071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:36-374
               
               
               Cow position:chr18:46867697-46867387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:53-452
               
               
               Cow position:chr18:34043831-34044203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:78-414
               
               
               Cow position:chr18:16137603-16137279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):210, 72

               
               
               Conread position:80-423
               
               
               Cow position:chr18:46876083-46875761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:93-384
               
               
               Cow position:chr18:18851639-18851912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):202, 56

               
               
               Conread position:95-456
               
               
               Cow position:chr18:27988446-27988797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:115-456
               
               
               Cow position:chr18:36509897-36510228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):165, 35

               
               
               Conread position:124-456
               
               
               Cow position:chr18:51694992-51695313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:191-452
               
               
               Cow position:chr18:17672458-17672196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:195-456
               
               
               Cow position:chr18:35054487-35054740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:202-357
               
               
               Cow position:chr18:18528558-18528705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:202-456
               
               
               Cow position:chr18:26245265-26245011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:212-397
               
               
               Cow position:chr18:45184649-45184838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:213-456
               
               
               Cow position:chr18:33752085-33752309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):162, 24

               
               
               Conread position:214-448
               
               
               Cow position:chr18:37558910-37559140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:217-404
               
               
               Cow position:chr18:33270294-33270482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:225-397
               
               
               Cow position:chr18:40316050-40315878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:276-456
               
               
               Cow position:chr18:5534444-5534621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:1-287
               
               
               Cow position:chr19:1656603-1656886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-385
               
               
               Cow position:chr19:33653552-33653183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:1-425
               
               
               Cow position:chr19:40816339-40815920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-428
               
               
               Cow position:chr19:39667357-39666954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:1-429
               
               
               Cow position:chr19:5730044-5730442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-450
               
               
               Cow position:chr19:4386787-4387219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr19:256436-256880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:1-456
               
               
               Cow position:chr19:892449-892020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr19:12774288-12774720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr19:28580489-28580059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr19:30756392-30756831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr19:33874599-33875027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr19:35384439-35384005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:1-456
               
               
               Cow position:chr19:39184364-39183929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr19:39391683-39392126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:2-310
               
               
               Cow position:chr19:48861029-48860738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):286, 39

               
               
               Conread position:2-417
               
               
               Cow position:chr19:28405530-28405132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:3-390
               
               
               Cow position:chr19:38061610-38061988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):294, 38

               
               
               Conread position:3-444
               
               
               Cow position:chr19:161958-161537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:4-397
               
               
               Cow position:chr19:52842735-52843112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):284, 22

               
               
               Conread position:6-429
               
               
               Cow position:chr19:1489821-1489407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:7-456
               
               
               Cow position:chr19:438258-437823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:8-452
               
               
               Cow position:chr19:376540-376103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:8-454
               
               
               Cow position:chr19:7343248-7343683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr19:773781-774220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr19:5900330-5899893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr19:20105906-20106342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:8-456
               
               
               Cow position:chr19:52150505-52150066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-459
               
               
               Cow position:chr19:28594732-28595148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:17-439
               
               
               Cow position:chr19:33527301-33527712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr19:32210886-32210459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:18-456
               
               
               Cow position:chr19:173447-173877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:19-388
               
               
               Cow position:chr19:788595-788946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 48

               
               
               Conread position:23-452
               
               
               Cow position:chr19:10509284-10508881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):157, 29

               
               
               Conread position:34-456
               
               
               Cow position:chr19:1588032-1587621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:63-382
               
               
               Cow position:chr19:44031615-44031920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):198, 68

               
               
               Conread position:87-456
               
               
               Cow position:chr19:205763-206123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 63

               
               
               Conread position:115-456
               
               
               Cow position:chr19:33942857-33943183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 35

               
               
               Conread position:194-466
               
               
               Cow position:chr19:16319281-16319003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:202-365
               
               
               Cow position:chr19:25788785-25788621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:211-456
               
               
               Cow position:chr19:40851089-40850848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 193

               
               
               Conread position:211-572
               
               
               Cow position:chr19:342598-342958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 163

               
               
               Conread position:214-407
               
               
               Cow position:chr19:9552805-9552605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:1-261
               
               
               Cow position:chr2:51998304-51998060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-315
               
               
               Cow position:chr2:45918939-45918619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 67

               
               
               Conread position:1-383
               
               
               Cow position:chr2:32434703-32434334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 150

               
               
               Conread position:1-383
               
               
               Cow position:chr2:55483530-55483166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 62

               
               
               Conread position:1-423
               
               
               Cow position:chr2:36029752-36029363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:1-438
               
               
               Cow position:chr2:34473955-34473553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:1-452
               
               
               Cow position:chr2:289165-288733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:1-455
               
               
               Cow position:chr2:1691592-1692021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr2:174944-174508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr2:574211-574649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr2:8119157-8119603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:10185613-10185169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:11158507-11158062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr2:12223659-12223219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:16900874-16901314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:24925180-24925627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:25887928-25887490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr2:28648983-28648551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:28793866-28794297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr2:34051773-34052217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr2:35356633-35357062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:1-456
               
               
               Cow position:chr2:40453527-40453949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:1-456
               
               
               Cow position:chr2:41180755-41181172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr2:41687385-41687827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr2:42332272-42331831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:1-456
               
               
               Cow position:chr2:44934359-44933930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:1-456
               
               
               Cow position:chr2:44990684-44990242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:1-456
               
               
               Cow position:chr2:45967400-45966973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:1-458
               
               
               Cow position:chr2:13045098-13044647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:1-461
               
               
               Cow position:chr2:45916214-45915775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:1-592
               
               
               Cow position:chr2:34564044-34563493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:385
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):287, 40

               
               
               Conread position:1-594
               
               
               Cow position:chr2:53330377-53330970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:2-429
               
               
               Cow position:chr2:47811464-47811878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:2-456
               
               
               Cow position:chr2:19011969-19012423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:2-456
               
               
               Cow position:chr2:51617872-51618322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:3-464
               
               
               Cow position:chr2:387163-386718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:6-452
               
               
               Cow position:chr2:80292134-80291708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:7-454
               
               
               Cow position:chr2:42670084-42669652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:8-452
               
               
               Cow position:chr2:54738113-54738543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr2:247253-246824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr2:3323939-3323506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr2:26905132-26904696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr2:26922048-26922486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr2:39422244-39422684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 126

               
               
               Conread position:8-456
               
               
               Cow position:chr2:52617097-52617535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr2:57336167-57336604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-594
               
               
               Cow position:chr2:41048428-41047853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:10-456
               
               
               Cow position:chr2:17424477-17424918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:12-450
               
               
               Cow position:chr2:6962144-6962564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:12-452
               
               
               Cow position:chr2:65937612-65937171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:12-452
               
               
               Cow position:chr2:81257794-81258232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:16-387
               
               
               Cow position:chr2:64224109-64223744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:16-432
               
               
               Cow position:chr2:20030054-20030448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):62, 134

               
               
               Conread position:17-444
               
               
               Cow position:chr2:28619322-28618923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:17-452
               
               
               Cow position:chr2:9958436-9958018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr2:364437-364008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr2:9908545-9908973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr2:10611015-10610586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:17-456
               
               
               Cow position:chr2:47037803-47037374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:20-456
               
               
               Cow position:chr2:72187850-72187443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 21

               
               
               Conread position:23-388
               
               
               Cow position:chr2:25766663-25766996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:24-452
               
               
               Cow position:chr2:47602628-47602210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:28-456
               
               
               Cow position:chr2:19225521-19225924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:29-456
               
               
               Cow position:chr2:53540583-53540994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:30-454
               
               
               Cow position:chr2:6673889-6674284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:30-456
               
               
               Cow position:chr2:49625261-49624861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:30-456
               
               
               Cow position:chr2:49628420-49628836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:31-283
               
               
               Cow position:chr2:49800884-49800626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:31-456
               
               
               Cow position:chr2:32656296-32656700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):262, 31

               
               
               Conread position:34-468
               
               
               Cow position:chr2:16074880-16074469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:48-456
               
               
               Cow position:chr2:2087505-2087110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:52-442
               
               
               Cow position:chr2:77129839-77129468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:54-456
               
               
               Cow position:chr2:32458373-32458007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-456
               
               
               Cow position:chr2:25743227-25743597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:76-357
               
               
               Cow position:chr2:43445641-43445909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:76-387
               
               
               Cow position:chr2:1114222-1114518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):147, 74

               
               
               Conread position:95-402
               
               
               Cow position:chr2:20872786-20872477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:101-456
               
               
               Cow position:chr2:10264689-10264351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):188, 49

               
               
               Conread position:104-452
               
               
               Cow position:chr2:6006122-6005790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:105-590
               
               
               Cow position:chr2:6880076-6880541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:120-456
               
               
               Cow position:chr2:24471892-24471572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):174, 30

               
               
               Conread position:123-456
               
               
               Cow position:chr2:52063504-52063819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:131-456
               
               
               Cow position:chr2:16291430-16291745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:142-396
               
               
               Cow position:chr2:72548134-72547890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:142-456
               
               
               Cow position:chr2:64768441-64768132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:145-338
               
               
               Cow position:chr2:50404927-50405116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 54

               
               
               Conread position:186-456
               
               
               Cow position:chr2:50078355-50078627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:191-456
               
               
               Cow position:chr2:36082599-36082861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:202-452
               
               
               Cow position:chr2:36992977-36993225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:207-456
               
               
               Cow position:chr2:5903530-5903282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:208-373
               
               
               Cow position:chr2:7629518-7629688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:208-397
               
               
               Cow position:chr2:58988574-58988773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:209-467
               
               
               Cow position:chr2:54693762-54694013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:211-402
               
               
               Cow position:chr2:56801818-56801634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:211-456
               
               
               Cow position:chr2:32065224-32064980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):78, 197

               
               
               Conread position:213-456
               
               
               Cow position:chr2:41154629-41154876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 202

               
               
               Conread position:228-452
               
               
               Cow position:chr2:211455-211236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:231-398
               
               
               Cow position:chr2:31448676-31448844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 144

               
               
               Conread position:231-456
               
               
               Cow position:chr2:24926252-24926476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:234-397
               
               
               Cow position:chr2:11558619-11558788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:234-437
               
               
               Cow position:chr2:12696631-12696427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:1-337
               
               
               Cow position:chr20:32349401-32349723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:1-386
               
               
               Cow position:chr20:9344101-9344463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-423
               
               
               Cow position:chr20:27338343-27338744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:1-425
               
               
               Cow position:chr20:19355900-19356310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:1-428
               
               
               Cow position:chr20:9521000-9520587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:1-452
               
               
               Cow position:chr20:13764038-13764468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr20:21915764-21916210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr20:29949651-29950098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr20:5536070-5536521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr20:12569655-12570080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr20:17660612-17660168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:1-456
               
               
               Cow position:chr20:23468529-23468089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:1-456
               
               
               Cow position:chr20:25849688-25849252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr20:27870337-27870785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr20:30686706-30687153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-594
               
               
               Cow position:chr20:16178633-16178054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:2-456
               
               
               Cow position:chr20:13499246-13499684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:6-456
               
               
               Cow position:chr20:21395070-21395493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):281, 34

               
               
               Conread position:7-371
               
               
               Cow position:chr20:2009283-2008922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:7-456
               
               
               Cow position:chr20:28161962-28162402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 58

               
               
               Conread position:8-456
               
               
               Cow position:chr20:30429411-30429849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-357
               
               
               Cow position:chr20:13678906-13678566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 142

               
               
               Conread position:11-456
               
               
               Cow position:chr20:19439058-19439493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:17-383
               
               
               Cow position:chr20:22210199-22210541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):358, 26

               
               
               Conread position:23-531
               
               
               Cow position:chr20:20753631-20753157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:337
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:28-451
               
               
               Cow position:chr20:15293150-15293553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:28-456
               
               
               Cow position:chr20:15066630-15067029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):309, 61

               
               
               Conread position:36-456
               
               
               Cow position:chr20:18967667-18968066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:47-360
               
               
               Cow position:chr20:13663876-13663566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:47-456
               
               
               Cow position:chr20:9546850-9547224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):328, 24

               
               
               Conread position:52-464
               
               
               Cow position:chr20:27896842-27896462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):379, 9

               
               
               Conread position:62-423
               
               
               Cow position:chr20:871813-871460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):218, 90

               
               
               Conread position:62-449
               
               
               Cow position:chr20:32120529-32120908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):218, 88

               
               
               Conread position:80-430
               
               
               Cow position:chr20:19340852-19341182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):295, 52

               
               
               Conread position:101-456
               
               
               Cow position:chr20:24615658-24615328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:135-438
               
               
               Cow position:chr20:33182872-33182593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:186-398
               
               
               Cow position:chr20:22698302-22698510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:186-456
               
               
               Cow position:chr20:12437116-12436843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:194-420
               
               
               Cow position:chr20:18323638-18323417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:194-456
               
               
               Cow position:chr20:26054390-26054113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 213

               
               
               Conread position:208-456
               
               
               Cow position:chr20:18314033-18313795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:231-456
               
               
               Cow position:chr20:8972827-8972600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:1-284
               
               
               Cow position:chr21:21915933-21916207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:1-315
               
               
               Cow position:chr21:5840017-5839712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-337
               
               
               Cow position:chr21:10284138-10284460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:1-428
               
               
               Cow position:chr21:2417462-2417873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:1-437
               
               
               Cow position:chr21:37372484-37372905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr21:147178-147607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1-455
               
               
               Cow position:chr21:47942195-47942637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr21:360907-361349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr21:2512093-2512539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr21:3780015-3780463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-456
               
               
               Cow position:chr21:11506857-11507303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr21:27069715-27069275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr21:27284714-27285149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr21:40270426-40269983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr21:47646578-47647020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:1-458
               
               
               Cow position:chr21:45786183-45785765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:1-590
               
               
               Cow position:chr21:28736429-28736990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-593
               
               
               Cow position:chr21:36979670-36979096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-402
               
               
               Cow position:chr21:21519847-21520251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:7-452
               
               
               Cow position:chr21:31515064-31514631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:8-348
               
               
               Cow position:chr21:27036146-27035815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-430
               
               
               Cow position:chr21:4185179-4185578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:8-433
               
               
               Cow position:chr21:39426314-39426738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr21:34822959-34822521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:10-386
               
               
               Cow position:chr21:27567012-27567367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:17-456
               
               
               Cow position:chr21:10567965-10568388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:17-456
               
               
               Cow position:chr21:12054756-12054328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr21:26635892-26635468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr21:30598218-30597781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:28-456
               
               
               Cow position:chr21:5018416-5018829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 39

               
               
               Conread position:29-456
               
               
               Cow position:chr21:42914637-42915054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:30-451
               
               
               Cow position:chr21:28985380-28985779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:35-456
               
               
               Cow position:chr21:1286927-1286526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:35-557
               
               
               Cow position:chr21:2539821-2539295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:350
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:36-452
               
               
               Cow position:chr21:29004234-29003852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 70

               
               
               Conread position:38-402
               
               
               Cow position:chr21:20743329-20742991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:39-456
               
               
               Cow position:chr21:4564751-4565150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:47-559
               
               
               Cow position:chr21:6625814-6626317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:48-482
               
               
               Cow position:chr21:23804815-23804411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):286, 47

               
               
               Conread position:52-464
               
               
               Cow position:chr21:38023424-38023821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:111-468
               
               
               Cow position:chr21:25783208-25783558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:112-456
               
               
               Cow position:chr21:19612113-19612449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:143-442
               
               
               Cow position:chr21:41404699-41404991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):147, 49

               
               
               Conread position:183-456
               
               
               Cow position:chr21:21943168-21942892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:191-428
               
               
               Cow position:chr21:31250439-31250672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:191-456
               
               
               Cow position:chr21:2880398-2880136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:201-383
               
               
               Cow position:chr21:40080829-40081015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:202-562
               
               
               Cow position:chr21:37149456-37149799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:205-442
               
               
               Cow position:chr21:405713-405483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:205-456
               
               
               Cow position:chr21:38801870-38802126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 204

               
               
               Conread position:209-456
               
               
               Cow position:chr21:28613765-28614017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):5, 200

               
               
               Conread position:210-390
               
               
               Cow position:chr21:21024909-21025090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:210-443
               
               
               Cow position:chr21:24085356-24085126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:215-456
               
               
               Cow position:chr21:34655287-34655517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:221-482
               
               
               Cow position:chr21:468357-468616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):188, 9

               
               
               Conread position:232-456
               
               
               Cow position:chr21:30563138-30563359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:270-456
               
               
               Cow position:chr21:6414522-6414335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:1-294
               
               
               Cow position:chr22:1323282-1323561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-353
               
               
               Cow position:chr22:2394914-2394573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:1-396
               
               
               Cow position:chr22:40721552-40721933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:1-430
               
               
               Cow position:chr22:8121005-8120596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-431
               
               
               Cow position:chr22:44606601-44606194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):62, 132

               
               
               Conread position:1-450
               
               
               Cow position:chr22:3305502-3305089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-451
               
               
               Cow position:chr22:44935045-44935475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr22:522319-521880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr22:13547696-13547261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr22:13673729-13673303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr22:31118170-31117728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:1-456
               
               
               Cow position:chr22:559632-559191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:1281651-1281216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr22:1519945-1519512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:6332785-6333227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:6502063-6501627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:1-456
               
               
               Cow position:chr22:11803978-11803534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:1-456
               
               
               Cow position:chr22:13773610-13774040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-456
               
               
               Cow position:chr22:17327381-17326940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:1-456
               
               
               Cow position:chr22:18815290-18814847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:19142614-19142168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr22:21035313-21034872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr22:23801124-23800701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr22:31333972-31333531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr22:33351755-33352181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr22:34169414-34169853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr22:35906313-35905869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr22:36860464-36860030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:37292589-37292160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr22:39468443-39468000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr22:42992249-42992693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-456
               
               
               Cow position:chr22:46580644-46580200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-551
               
               
               Cow position:chr22:316583-317120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:2-456
               
               
               Cow position:chr22:290626-290182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:3-362
               
               
               Cow position:chr22:42837308-42837656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:6-455
               
               
               Cow position:chr22:3803267-3803697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:8-397
               
               
               Cow position:chr22:19536636-19537017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-398
               
               
               Cow position:chr22:45582006-45582377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 47

               
               
               Conread position:8-437
               
               
               Cow position:chr22:694704-695115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr22:6021746-6022170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:8-456
               
               
               Cow position:chr22:10908752-10908318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr22:27308694-27308260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr22:44492135-44492573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:13-385
               
               
               Cow position:chr22:39689581-39689926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):275, 28

               
               
               Conread position:14-456
               
               
               Cow position:chr22:3277270-3276839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:14-456
               
               
               Cow position:chr22:18028374-18028808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:16-332
               
               
               Cow position:chr22:36579188-36578877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:17-433
               
               
               Cow position:chr22:7304564-7304160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:17-456
               
               
               Cow position:chr22:12730596-12730178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:18-456
               
               
               Cow position:chr22:20239749-20239321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:24-383
               
               
               Cow position:chr22:10304229-10303892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:30-456
               
               
               Cow position:chr22:326086-325667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:34-332
               
               
               Cow position:chr22:36589864-36589567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:38-456
               
               
               Cow position:chr22:24951667-24952075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:41-456
               
               
               Cow position:chr22:15852530-15852940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:47-456
               
               
               Cow position:chr22:44397553-44397947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:49-278
               
               
               Cow position:chr22:8978034-8978264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:55-409
               
               
               Cow position:chr22:13576008-13575663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:65-397
               
               
               Cow position:chr22:46585426-46585101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 85

               
               
               Conread position:75-428
               
               
               Cow position:chr22:44348706-44348372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):157, 74

               
               
               Conread position:80-261
               
               
               Cow position:chr22:26536209-26536376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:115-456
               
               
               Cow position:chr22:46614492-46614821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:120-456
               
               
               Cow position:chr22:35670471-35670148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:126-456
               
               
               Cow position:chr22:16202111-16202431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):168, 24

               
               
               Conread position:186-400
               
               
               Cow position:chr22:44518382-44518170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:202-332
               
               
               Cow position:chr22:36548060-36547928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:202-443
               
               
               Cow position:chr22:41241489-41241725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):130, 203

               
               
               Conread position:205-456
               
               
               Cow position:chr22:44368219-44367964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):20, 208

               
               
               Conread position:209-428
               
               
               Cow position:chr22:30128855-30129073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 139

               
               
               Conread position:209-456
               
               
               Cow position:chr22:30146504-30146747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):6, 139

               
               
               Conread position:211-456
               
               
               Cow position:chr22:21590692-21590940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 201

               
               
               Conread position:211-456
               
               
               Cow position:chr22:44458223-44458465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:228-456
               
               
               Cow position:chr22:36185046-36185270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 148

               
               
               Conread position:232-595
               
               
               Cow position:chr22:3272806-3272452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:264-456
               
               
               Cow position:chr22:44366781-44366589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:270-456
               
               
               Cow position:chr22:30677383-30677196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:1-390
               
               
               Cow position:chr23:21243665-21243296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:1-423
               
               
               Cow position:chr23:618395-617988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):290, 40

               
               
               Conread position:1-450
               
               
               Cow position:chr23:15876495-15876061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-455
               
               
               Cow position:chr23:5873503-5873059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:1-456
               
               
               Cow position:chr23:2026006-2025566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr23:2758964-2759412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr23:3707198-3707635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr23:3880011-3879572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr23:4818096-4818536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr23:4889760-4890200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr23:11779859-11780293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr23:15178150-15178577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr23:19949517-19949072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr23:20155137-20154713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr23:36030304-36029866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:1-594
               
               
               Cow position:chr23:14972901-14972325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:1-595
               
               
               Cow position:chr23:30237342-30237916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-386
               
               
               Cow position:chr23:23282304-23282665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:2-404
               
               
               Cow position:chr23:13510712-13511080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-452
               
               
               Cow position:chr23:13512189-13512607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 20

               
               
               Conread position:6-456
               
               
               Cow position:chr23:2794176-2793744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr23:22146232-22145792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:7-456
               
               
               Cow position:chr23:965413-964981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:7-466
               
               
               Cow position:chr23:16498159-16497720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 34

               
               
               Conread position:8-357
               
               
               Cow position:chr23:14923218-14922878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr23:28218499-28218939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr23:41142149-41141713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:10-427
               
               
               Cow position:chr23:14262939-14263357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 197

               
               
               Conread position:12-456
               
               
               Cow position:chr23:15526651-15527091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:14-388
               
               
               Cow position:chr23:7354510-7354869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:14-396
               
               
               Cow position:chr23:7045086-7044729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:17-452
               
               
               Cow position:chr23:14777868-14777455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:29-456
               
               
               Cow position:chr23:11077084-11076671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:54-456
               
               
               Cow position:chr23:31648896-31648518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:58-456
               
               
               Cow position:chr23:16054909-16055287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):13, 9

               
               
               Conread position:66-452
               
               
               Cow position:chr23:4513606-4513993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:75-456
               
               
               Cow position:chr23:2718459-2718827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):214, 46

               
               
               Conread position:76-456
               
               
               Cow position:chr23:11714722-11714352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):103, 74

               
               
               Conread position:77-351
               
               
               Cow position:chr23:16614025-16613763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):211, 6

               
               
               Conread position:77-398
               
               
               Cow position:chr23:21822129-21821836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):304, 31

               
               
               Conread position:112-456
               
               
               Cow position:chr23:38691673-38692005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:138-456
               
               
               Cow position:chr23:7314116-7314424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:204-360
               
               
               Cow position:chr23:22942728-22942572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:205-456
               
               
               Cow position:chr23:23172039-23172292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:211-456
               
               
               Cow position:chr23:15218604-15218374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:212-456
               
               
               Cow position:chr23:22167914-22168154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:213-456
               
               
               Cow position:chr23:2342354-2342593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 78

               
               
               Conread position:279-456
               
               
               Cow position:chr23:26838161-26838331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-352
               
               
               Cow position:chr24:19640842-19641185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):250, 64

               
               
               Conread position:1-387
               
               
               Cow position:chr24:35869394-35869033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 25

               
               
               Conread position:1-428
               
               
               Cow position:chr24:13179857-13179444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 84

               
               
               Conread position:1-456
               
               
               Cow position:chr24:147451-147008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-456
               
               
               Cow position:chr24:6353309-6353741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:1-456
               
               
               Cow position:chr24:6407197-6407636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr24:12087367-12087803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-456
               
               
               Cow position:chr24:12334597-12334127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr24:19834556-19835010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr24:35840903-35840482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:2-456
               
               
               Cow position:chr24:14383476-14383025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 151

               
               
               Conread position:6-456
               
               
               Cow position:chr24:4414365-4413943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr24:9545230-9545658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 27

               
               
               Conread position:8-397
               
               
               Cow position:chr24:29305147-29304763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-452
               
               
               Cow position:chr24:19702667-19703094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr24:5992059-5991622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr24:6023939-6023484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr24:11152071-11151633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr24:23504696-23504256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:12-456
               
               
               Cow position:chr24:33934559-33934991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:13-456
               
               
               Cow position:chr24:13233429-13233862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:16-456
               
               
               Cow position:chr24:38638712-38639126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):275, 28

               
               
               Conread position:17-452
               
               
               Cow position:chr24:9090876-9090452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:17-456
               
               
               Cow position:chr24:6435659-6436087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:17-456
               
               
               Cow position:chr24:7062717-7063146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr24:9187567-9187138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr24:12699642-12699220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr24:13044466-13044024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:17-456
               
               
               Cow position:chr24:13189365-13189776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 26

               
               
               Conread position:17-456
               
               
               Cow position:chr24:44018683-44019112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:18-398
               
               
               Cow position:chr24:14871142-14870779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:19-430
               
               
               Cow position:chr24:14389355-14388961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:30-384
               
               
               Cow position:chr24:1450616-1450938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:44-404
               
               
               Cow position:chr24:36709781-36710121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:52-452
               
               
               Cow position:chr24:12163154-12163534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:63-442
               
               
               Cow position:chr24:38585898-38585525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 121

               
               
               Conread position:63-456
               
               
               Cow position:chr24:16561103-16560710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 87

               
               
               Conread position:89-432
               
               
               Cow position:chr24:16097774-16098105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):194, 53

               
               
               Conread position:94-452
               
               
               Cow position:chr24:16875965-16875606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:111-456
               
               
               Cow position:chr24:25437564-25437882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:118-373
               
               
               Cow position:chr24:10222893-10222652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:142-407
               
               
               Cow position:chr24:17279085-17278828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):147, 37

               
               
               Conread position:143-387
               
               
               Cow position:chr24:4044951-4044716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:186-456
               
               
               Cow position:chr24:8606148-8606420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:204-450
               
               
               Cow position:chr24:42584400-42584162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 19

               
               
               Conread position:205-456
               
               
               Cow position:chr24:310216-310471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:210-437
               
               
               Cow position:chr24:12204983-12204759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:225-456
               
               
               Cow position:chr24:40468425-40468651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:231-456
               
               
               Cow position:chr24:12127735-12127507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 177

               
               
               Conread position:237-456
               
               
               Cow position:chr24:16083397-16083177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 173

               
               
               Conread position:254-456
               
               
               Cow position:chr24:14755399-14755602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:1-339
               
               
               Cow position:chr25:32988135-32987807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:1-369
               
               
               Cow position:chr25:18273647-18273291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-397
               
               
               Cow position:chr25:30266616-30267003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:1-428
               
               
               Cow position:chr25:14957328-14956923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-445
               
               
               Cow position:chr25:13454458-13454038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr25:12941551-12941105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr25:17655561-17655989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr25:18305270-18305705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:1-456
               
               
               Cow position:chr25:18888621-18888178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:1-456
               
               
               Cow position:chr25:22148662-22149107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr25:34345882-34345432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:1-459
               
               
               Cow position:chr25:11041488-11041918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-460
               
               
               Cow position:chr25:17588435-17587997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:4-425
               
               
               Cow position:chr25:11931654-11931257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):371, 37

               
               
               Conread position:4-456
               
               
               Cow position:chr25:18450444-18450900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:6-387
               
               
               Cow position:chr25:24659086-24658715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr25:20630755-20631190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:8-362
               
               
               Cow position:chr25:3974165-3974503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:8-456
               
               
               Cow position:chr25:18192633-18192191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-458
               
               
               Cow position:chr25:27021457-27021028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:14-452
               
               
               Cow position:chr25:20774236-20773809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:17-455
               
               
               Cow position:chr25:13782172-13782612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:17-456
               
               
               Cow position:chr25:17559423-17558999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:21-433
               
               
               Cow position:chr25:19921680-19922087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 24

               
               
               Conread position:30-456
               
               
               Cow position:chr25:13693519-13693102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:32-427
               
               
               Cow position:chr25:18486395-18486028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:52-454
               
               
               Cow position:chr25:18251741-18251368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:59-456
               
               
               Cow position:chr25:21902217-21902603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):237, 91

               
               
               Conread position:69-456
               
               
               Cow position:chr25:13062520-13062144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 81

               
               
               Conread position:88-317
               
               
               Cow position:chr25:30131754-30131538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:135-576
               
               
               Cow position:chr25:9392891-9393299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:147-432
               
               
               Cow position:chr25:25543185-25543456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):212, 37

               
               
               Conread position:201-452
               
               
               Cow position:chr25:13999067-13999329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 209

               
               
               Conread position:202-452
               
               
               Cow position:chr25:19339289-19339037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:205-383
               
               
               Cow position:chr25:27523293-27523114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:210-390
               
               
               Cow position:chr25:30149392-30149210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-456
               
               
               Cow position:chr25:20346642-20346417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:270-529
               
               
               Cow position:chr25:33614226-33614486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 135

               
               
               Conread position:1-455
               
               
               Cow position:chr26:9561653-9561207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 154

               
               
               Conread position:1-456
               
               
               Cow position:chr26:6848303-6847870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr26:17395772-17395335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:2-373
               
               
               Cow position:chr26:12666633-12666973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:2-455
               
               
               Cow position:chr26:21825539-21825107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):394, 39

               
               
               Conread position:5-426
               
               
               Cow position:chr26:16856976-16856558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:6-402
               
               
               Cow position:chr26:30588219-30587844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr26:17325213-17325655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr26:19350376-19349936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr26:12587415-12586977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:7-594
               
               
               Cow position:chr26:5676253-5676825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:8-420
               
               
               Cow position:chr26:11287416-11287820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):215, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr26:3029700-3029262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-475
               
               
               Cow position:chr26:8919979-8920437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:10-456
               
               
               Cow position:chr26:6805919-6805489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:12-456
               
               
               Cow position:chr26:14895093-14895523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:15-456
               
               
               Cow position:chr26:34012826-34013237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:17-456
               
               
               Cow position:chr26:18853376-18853789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:38-423
               
               
               Cow position:chr26:35337008-35336631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:63-456
               
               
               Cow position:chr26:8871029-8871410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):86, 99

               
               
               Conread position:64-286
               
               
               Cow position:chr26:5218984-5218779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:76-452
               
               
               Cow position:chr26:4603940-4603588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 56

               
               
               Conread position:78-388
               
               
               Cow position:chr26:30083686-30083990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:142-420
               
               
               Cow position:chr26:12827209-12827486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:188-452
               
               
               Cow position:chr26:16478636-16478900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:194-451
               
               
               Cow position:chr26:1086922-1086659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 218

               
               
               Conread position:194-456
               
               
               Cow position:chr26:35369245-35369513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:204-456
               
               
               Cow position:chr26:8282491-8282246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:205-456
               
               
               Cow position:chr26:28373907-28373652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 203

               
               
               Conread position:211-451
               
               
               Cow position:chr26:11036749-11036981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:235-456
               
               
               Cow position:chr26:9113237-9113458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 174

               
               
               Conread position:255-452
               
               
               Cow position:chr26:9843322-9843122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:256-456
               
               
               Cow position:chr26:33148499-33148298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:1-320
               
               
               Cow position:chr27:28892672-28892981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:1-387
               
               
               Cow position:chr27:11486390-11486750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 66

               
               
               Conread position:1-390
               
               
               Cow position:chr27:25332010-25331644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-455
               
               
               Cow position:chr27:15274987-15274549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr27:1210432-1210875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr27:9330811-9331253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr27:9992123-9991694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr27:13898398-13898831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:1-456
               
               
               Cow position:chr27:26326150-26326580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:1-456
               
               
               Cow position:chr27:27664077-27664514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-371
               
               
               Cow position:chr27:23292357-23292698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:3-426
               
               
               Cow position:chr27:7792756-7792363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):373, 55

               
               
               Conread position:4-390
               
               
               Cow position:chr27:22034342-22034715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr27:4980454-4980891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr27:3234453-3234003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:17-403
               
               
               Cow position:chr27:21335031-21335395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:17-459
               
               
               Cow position:chr27:1677490-1677049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:20-420
               
               
               Cow position:chr27:16425824-16426206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:47-456
               
               
               Cow position:chr27:19259818-19260217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:52-446
               
               
               Cow position:chr27:1575724-1576108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:54-456
               
               
               Cow position:chr27:16033277-16032884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:59-402
               
               
               Cow position:chr27:25084712-25085036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:78-357
               
               
               Cow position:chr27:16552021-16552287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):258, 72

               
               
               Conread position:143-452
               
               
               Cow position:chr27:12748245-12748551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):146, 59

               
               
               Conread position:175-452
               
               
               Cow position:chr27:22150180-22150460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:194-456
               
               
               Cow position:chr27:798316-798048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 221

               
               
               Conread position:203-397
               
               
               Cow position:chr27:8589987-8590178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:229-456
               
               
               Cow position:chr27:19524845-19525072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:232-456
               
               
               Cow position:chr27:167632-167409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 172

               
               
               Conread position:271-462
               
               
               Cow position:chr27:21286210-21286027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:279-456
               
               
               Cow position:chr27:8199151-8199327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:298-456
               
               
               Cow position:chr27:29056522-29056679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:1-371
               
               
               Cow position:chr28:10496409-10496064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-397
               
               
               Cow position:chr28:10460484-10460102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:1-428
               
               
               Cow position:chr28:10646299-10645897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr28:783779-784220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr28:1386274-1385846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:1-456
               
               
               Cow position:chr28:5750585-5750140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr28:5799418-5799855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:5938609-5939051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:6778820-6778378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-456
               
               
               Cow position:chr28:14704265-14703820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:17389523-17389964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:17666184-17665744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:22260029-22259591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr28:29821118-29821554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr28:32791256-32790831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:1-484
               
               
               Cow position:chr28:8719823-8719366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:2-371
               
               
               Cow position:chr28:21566583-21566937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:2-456
               
               
               Cow position:chr28:18146611-18146177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:3-397
               
               
               Cow position:chr28:21360620-21361006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:3-432
               
               
               Cow position:chr28:15587212-15587611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:3-456
               
               
               Cow position:chr28:1505991-1506429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:6-380
               
               
               Cow position:chr28:14232804-14232432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:6-452
               
               
               Cow position:chr28:12409107-12408666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr28:1166752-1166331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:6-456
               
               
               Cow position:chr28:2085586-2086028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:7-452
               
               
               Cow position:chr28:18519320-18518888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 38

               
               
               Conread position:7-456
               
               
               Cow position:chr28:3191127-3190689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:8-437
               
               
               Cow position:chr28:7827116-7827529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr28:1954483-1954918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr28:24589986-24590420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:12-452
               
               
               Cow position:chr28:7003129-7003555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:12-456
               
               
               Cow position:chr28:7741575-7741995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:14-456
               
               
               Cow position:chr28:484460-484031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:17-455
               
               
               Cow position:chr28:22042149-22041723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr28:12151445-12151888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:19-383
               
               
               Cow position:chr28:4575325-4574978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:27-397
               
               
               Cow position:chr28:15241537-15241172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:28-456
               
               
               Cow position:chr28:15034974-15034548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:30-456
               
               
               Cow position:chr28:33253462-33253877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 29

               
               
               Conread position:33-398
               
               
               Cow position:chr28:12648529-12648166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:63-383
               
               
               Cow position:chr28:19946523-19946218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):217, 39

               
               
               Conread position:79-456
               
               
               Cow position:chr28:5112943-5112561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:82-456
               
               
               Cow position:chr28:1216633-1216272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):151, 52

               
               
               Conread position:111-594
               
               
               Cow position:chr28:2117210-2117674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:116-456
               
               
               Cow position:chr28:10580644-10580311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:123-464
               
               
               Cow position:chr28:13604001-13604330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 27

               
               
               Conread position:194-456
               
               
               Cow position:chr28:1459390-1459658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:194-456
               
               
               Cow position:chr28:6537515-6537247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:202-456
               
               
               Cow position:chr28:8784629-8784873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:205-456
               
               
               Cow position:chr28:6786574-6786818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:205-456
               
               
               Cow position:chr28:10470978-10471221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:211-456
               
               
               Cow position:chr28:34595549-34595795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 194

               
               
               Conread position:212-463
               
               
               Cow position:chr28:5803347-5803589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:214-456
               
               
               Cow position:chr28:14752106-14752348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:220-456
               
               
               Cow position:chr28:8380365-8380600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:228-456
               
               
               Cow position:chr28:33637876-33638107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:271-456
               
               
               Cow position:chr28:1813552-1813370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:1-310
               
               
               Cow position:chr29:7430131-7429825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-321
               
               
               Cow position:chr29:8774226-8773910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):302, 40

               
               
               Conread position:1-337
               
               
               Cow position:chr29:38237435-38237111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-447
               
               
               Cow position:chr29:10647162-10646734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr29:2100938-2101366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr29:3328421-3328866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr29:14587010-14587446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr29:16023657-16024090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr29:18855863-18855418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr29:19622195-19621752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr29:19654715-19655147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:1-456
               
               
               Cow position:chr29:23977211-23977650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr29:26163746-26163306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr29:32541182-32541621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr29:38228065-38228505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr29:39078618-39078184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 66

               
               
               Conread position:1-456
               
               
               Cow position:chr29:45460819-45461274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-594
               
               
               Cow position:chr29:25931444-25930877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:4-387
               
               
               Cow position:chr29:30259433-30259079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:6-311
               
               
               Cow position:chr29:10822890-10822594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr29:2840251-2839815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 61

               
               
               Conread position:6-456
               
               
               Cow position:chr29:5236109-5236548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr29:14210477-14210025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr29:40501890-40501480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:8-356
               
               
               Cow position:chr29:35814881-35814543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr29:7845481-7845917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:8-456
               
               
               Cow position:chr29:27979830-27979393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr29:31182498-31182929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr29:38207581-38207137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-458
               
               
               Cow position:chr29:32558667-32558224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:12-383
               
               
               Cow position:chr29:2465757-2465397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:17-452
               
               
               Cow position:chr29:42939094-42938669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:20-428
               
               
               Cow position:chr29:5981605-5981209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:22-456
               
               
               Cow position:chr29:42092867-42093292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:30-456
               
               
               Cow position:chr29:15997535-15997125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 13

               
               
               Conread position:52-331
               
               
               Cow position:chr29:9642654-9642384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):125, 98

               
               
               Conread position:55-422
               
               
               Cow position:chr29:16635067-16635437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:63-563
               
               
               Cow position:chr29:12793363-12793847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 213

               
               
               Conread position:76-437
               
               
               Cow position:chr29:21425854-21425512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 58

               
               
               Conread position:76-452
               
               
               Cow position:chr29:8664670-8665028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:84-456
               
               
               Cow position:chr29:2691335-2691690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):205, 66

               
               
               Conread position:85-456
               
               
               Cow position:chr29:6264829-6264473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):204, 65

               
               
               Conread position:147-456
               
               
               Cow position:chr29:21431625-21431325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:152-452
               
               
               Cow position:chr29:13851652-13851348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 259

               
               
               Conread position:177-456
               
               
               Cow position:chr29:35298160-35298437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 138

               
               
               Conread position:194-456
               
               
               Cow position:chr29:10023073-10022805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:194-456
               
               
               Cow position:chr29:29503000-29502732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:202-456
               
               
               Cow position:chr29:409975-409721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:205-426
               
               
               Cow position:chr29:34551640-34551863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:205-456
               
               
               Cow position:chr29:6198481-6198226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:207-424
               
               
               Cow position:chr29:4633344-4633130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:208-456
               
               
               Cow position:chr29:19888860-19889113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:211-460
               
               
               Cow position:chr29:27262434-27262185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 125

               
               
               Conread position:214-401
               
               
               Cow position:chr29:21265994-21266185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:225-451
               
               
               Cow position:chr29:4516859-4517086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 185

               
               
               Conread position:225-456
               
               
               Cow position:chr29:27180458-27180226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:280-456
               
               
               Cow position:chr29:7429772-7429599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:1-343
               
               
               Cow position:chr3:48229473-48229143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:1-389
               
               
               Cow position:chr3:24445075-24444696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-398
               
               
               Cow position:chr3:31319154-31319548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 186

               
               
               Conread position:1-399
               
               
               Cow position:chr3:37952998-37952604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:1-402
               
               
               Cow position:chr3:70888143-70888526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:1-424
               
               
               Cow position:chr3:24588449-24588054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:1-424
               
               
               Cow position:chr3:50916337-50916754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:1-429
               
               
               Cow position:chr3:78026418-78025999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:1-450
               
               
               Cow position:chr3:19720679-19720224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr3:10240661-10241092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr3:29579629-29580068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr3:2709869-2709425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr3:5994089-5993638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr3:18943032-18943465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr3:19755934-19755519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:1-456
               
               
               Cow position:chr3:21181698-21181255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:1-456
               
               
               Cow position:chr3:23289332-23288891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:1-456
               
               
               Cow position:chr3:24644233-24644656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr3:30617922-30617477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr3:40824391-40824835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr3:48058355-48057918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr3:49544207-49543768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr3:57483729-57483283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr3:59862379-59862815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:1-456
               
               
               Cow position:chr3:63002540-63002119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-458
               
               
               Cow position:chr3:52653644-52653220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:1-463
               
               
               Cow position:chr3:36877658-36877202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-594
               
               
               Cow position:chr3:53516606-53517169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:2-428
               
               
               Cow position:chr3:38494240-38494657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:2-452
               
               
               Cow position:chr3:2854442-2854007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:2-452
               
               
               Cow position:chr3:55892415-55892827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 132

               
               
               Conread position:2-456
               
               
               Cow position:chr3:18355007-18354582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:2-456
               
               
               Cow position:chr3:67164289-67164724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:2-590
               
               
               Cow position:chr3:2906772-2906201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:3-420
               
               
               Cow position:chr3:82933795-82934191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):286, 6

               
               
               Conread position:3-426
               
               
               Cow position:chr3:19832915-19832503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):287, 38

               
               
               Conread position:4-286
               
               
               Cow position:chr3:12678836-12678574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:4-421
               
               
               Cow position:chr3:29338898-29338496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:6-456
               
               
               Cow position:chr3:42448114-42448558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:7-324
               
               
               Cow position:chr3:64356791-64356486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:7-456
               
               
               Cow position:chr3:56100679-56100247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:8-388
               
               
               Cow position:chr3:64651642-64652013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-389
               
               
               Cow position:chr3:39879999-39879638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 8

               
               
               Conread position:8-397
               
               
               Cow position:chr3:34506338-34505955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-455
               
               
               Cow position:chr3:56398192-56398620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:8-456
               
               
               Cow position:chr3:1742340-1742774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:8-456
               
               
               Cow position:chr3:2869798-2870231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr3:2918472-2918912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:4287094-4287532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:7157715-7157277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:27919432-27919870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr3:36863453-36863015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:37970051-37970489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:40339140-40338705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:41209597-41209159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:47080405-47079967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr3:48843260-48843699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-458
               
               
               Cow position:chr3:6783374-6783811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:8-458
               
               
               Cow position:chr3:68872741-68872310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:12-456
               
               
               Cow position:chr3:18812513-18812941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 33

               
               
               Conread position:12-456
               
               
               Cow position:chr3:34029915-34029478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:16-456
               
               
               Cow position:chr3:64016357-64015925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:16-594
               
               
               Cow position:chr3:20382039-20382596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:17-456
               
               
               Cow position:chr3:3524038-3524454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:7247558-7247977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:19879660-19880087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:29330275-29329847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:30331107-30330678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:32622025-32621599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:45033757-45034182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:17-456
               
               
               Cow position:chr3:64027121-64026692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr3:74058545-74058969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:19-375
               
               
               Cow position:chr3:72783929-72783576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):191, 64

               
               
               Conread position:22-415
               
               
               Cow position:chr3:74226399-74226019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:29-456
               
               
               Cow position:chr3:46860265-46859848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:30-456
               
               
               Cow position:chr3:5884561-5884971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:30-456
               
               
               Cow position:chr3:5953165-5952744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:30-456
               
               
               Cow position:chr3:49136543-49136123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:30-463
               
               
               Cow position:chr3:45975525-45975960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:36-452
               
               
               Cow position:chr3:72631097-72631501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:36-455
               
               
               Cow position:chr3:64823136-64823553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:37-398
               
               
               Cow position:chr3:47087336-47087686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:75-437
               
               
               Cow position:chr3:31416093-31416440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:77-456
               
               
               Cow position:chr3:38867392-38867760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:79-456
               
               
               Cow position:chr3:3840433-3840074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):330, 73

               
               
               Conread position:84-452
               
               
               Cow position:chr3:51939018-51938665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:87-320
               
               
               Cow position:chr3:42720608-42720388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):204, 73

               
               
               Conread position:92-359
               
               
               Cow position:chr3:72671436-72671180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):196, 89

               
               
               Conread position:96-456
               
               
               Cow position:chr3:51364693-51364346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:126-397
               
               
               Cow position:chr3:58948662-58948923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:175-424
               
               
               Cow position:chr3:33706751-33706513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:175-456
               
               
               Cow position:chr3:29575966-29575681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:183-422
               
               
               Cow position:chr3:11541942-11542178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:183-456
               
               
               Cow position:chr3:23206703-23206431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:201-397
               
               
               Cow position:chr3:5948730-5948536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:201-401
               
               
               Cow position:chr3:27691856-27692055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 116

               
               
               Conread position:202-455
               
               
               Cow position:chr3:5430587-5430335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 179

               
               
               Conread position:203-432
               
               
               Cow position:chr3:37626167-37626416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 166

               
               
               Conread position:205-456
               
               
               Cow position:chr3:44925249-44925505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 209

               
               
               Conread position:205-458
               
               
               Cow position:chr3:63241049-63240801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):167, 26

               
               
               Conread position:208-390
               
               
               Cow position:chr3:55486192-55486371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:208-452
               
               
               Cow position:chr3:65208026-65207782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:210-456
               
               
               Cow position:chr3:56146499-56146746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 200

               
               
               Conread position:211-385
               
               
               Cow position:chr3:63946374-63946547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:211-464
               
               
               Cow position:chr3:2509843-2509589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:213-452
               
               
               Cow position:chr3:34198075-34198311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:217-429
               
               
               Cow position:chr3:40616641-40616430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:1-282
               
               
               Cow position:chr4:41333496-41333761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-302
               
               
               Cow position:chr4:54239779-54240061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-326
               
               
               Cow position:chr4:967271-966952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-396
               
               
               Cow position:chr4:34178430-34178051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:1-397
               
               
               Cow position:chr4:19005504-19005120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:1-404
               
               
               Cow position:chr4:6489556-6489157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-452
               
               
               Cow position:chr4:12588138-12588570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr4:36897183-36897618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr4:47522140-47522600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:1-456
               
               
               Cow position:chr4:1049450-1049017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr4:6206413-6206852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr4:10882356-10882794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:1-456
               
               
               Cow position:chr4:13494137-13494572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr4:16639420-16639856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr4:25598690-25598239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr4:26876973-26876537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr4:31564497-31564037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr4:60263354-60262916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:1-456
               
               
               Cow position:chr4:67682000-67682443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:2-387
               
               
               Cow position:chr4:22474158-22474529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 39

               
               
               Conread position:3-373
               
               
               Cow position:chr4:11110470-11110117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:3-374
               
               
               Cow position:chr4:31756450-31756813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:3-452
               
               
               Cow position:chr4:46665335-46665775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:6-387
               
               
               Cow position:chr4:44924718-44924359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 14

               
               
               Conread position:6-428
               
               
               Cow position:chr4:42405417-42405830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:6-456
               
               
               Cow position:chr4:12240405-12239978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr4:17925151-17924715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 39

               
               
               Conread position:6-456
               
               
               Cow position:chr4:43881919-43882351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr4:43318827-43318390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:8-456
               
               
               Cow position:chr4:99402-98971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr4:159976-160403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr4:4416873-4417303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr4:5444018-5443579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr4:17093051-17092616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:8-456
               
               
               Cow position:chr4:45106274-45106712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-464
               
               
               Cow position:chr4:4178076-4178501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 20

               
               
               Conread position:12-456
               
               
               Cow position:chr4:33072000-33071588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):268, 33

               
               
               Conread position:14-402
               
               
               Cow position:chr4:50975447-50975822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:14-456
               
               
               Cow position:chr4:41959716-41960146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:16-456
               
               
               Cow position:chr4:41955583-41956009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:17-433
               
               
               Cow position:chr4:18423700-18423293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr4:18337676-18338100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr4:32212987-32213418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:24-297
               
               
               Cow position:chr4:49939757-49939489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:27-428
               
               
               Cow position:chr4:14755833-14755453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:28-427
               
               
               Cow position:chr4:52268953-52268562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:29-320
               
               
               Cow position:chr4:47253504-47253225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:38-418
               
               
               Cow position:chr4:9647220-9647568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:54-389
               
               
               Cow position:chr4:41191744-41191420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:62-385
               
               
               Cow position:chr4:41428178-41428488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:115-456
               
               
               Cow position:chr4:9355298-9355625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:142-456
               
               
               Cow position:chr4:33494492-33494801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:183-442
               
               
               Cow position:chr4:13321481-13321228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:186-452
               
               
               Cow position:chr4:42926063-42925796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:191-456
               
               
               Cow position:chr4:31638938-31638679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:194-456
               
               
               Cow position:chr4:65665416-65665148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:199-450
               
               
               Cow position:chr4:20604701-20604932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:203-398
               
               
               Cow position:chr4:49716778-49716971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:203-452
               
               
               Cow position:chr4:6519824-6520054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:206-402
               
               
               Cow position:chr4:58410705-58410893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):178, 85

               
               
               Conread position:213-456
               
               
               Cow position:chr4:21359232-21359472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:225-456
               
               
               Cow position:chr4:17502317-17502085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 185

               
               
               Conread position:234-456
               
               
               Cow position:chr4:14386844-14387067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 171

               
               
               Conread position:234-594
               
               
               Cow position:chr4:27334954-27335301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 156

               
               
               Conread position:237-456
               
               
               Cow position:chr4:28653466-28653246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 168

               
               
               Conread position:257-456
               
               
               Cow position:chr4:604676-604876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:268-456
               
               
               Cow position:chr4:30472269-30472459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:268-456
               
               
               Cow position:chr4:34221801-34221986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:276-456
               
               
               Cow position:chr4:3356866-3356687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:1-351
               
               
               Cow position:chr5:29434812-29434484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:1-386
               
               
               Cow position:chr5:41527887-41527517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 40

               
               
               Conread position:1-389
               
               
               Cow position:chr5:14784451-14784090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):302, 28

               
               
               Conread position:1-398
               
               
               Cow position:chr5:40788970-40789355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-402
               
               
               Cow position:chr5:1341128-1340734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-423
               
               
               Cow position:chr5:31100518-31100113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 121

               
               
               Conread position:1-432
               
               
               Cow position:chr5:23669223-23668812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:1-452
               
               
               Cow position:chr5:54791728-54791287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr5:55628896-55629332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-454
               
               
               Cow position:chr5:4070113-4070565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-455
               
               
               Cow position:chr5:45701220-45701657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:1-455
               
               
               Cow position:chr5:51308955-51308512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr5:3503201-3502758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr5:4386148-4386586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr5:6153998-6153549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr5:10775364-10774914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr5:10855911-10855468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr5:15375621-15376034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):280, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr5:18400786-18400349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr5:18885625-18885182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr5:30580243-30580693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:1-456
               
               
               Cow position:chr5:34697509-34697946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 49

               
               
               Conread position:1-456
               
               
               Cow position:chr5:37733252-37733698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:1-456
               
               
               Cow position:chr5:41960829-41960397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:1-456
               
               
               Cow position:chr5:48807834-48807384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr5:57481634-57481190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr5:64781111-64780665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:2-385
               
               
               Cow position:chr5:41554430-41554059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:2-397
               
               
               Cow position:chr5:60716703-60716324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 39

               
               
               Conread position:2-428
               
               
               Cow position:chr5:29767035-29767444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:3-373
               
               
               Cow position:chr5:23686985-23686634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:3-426
               
               
               Cow position:chr5:62413883-62414290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:4-441
               
               
               Cow position:chr5:7143139-7142731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-456
               
               
               Cow position:chr5:2915359-2915783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr5:18560493-18560058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:7-316
               
               
               Cow position:chr5:53625012-53624714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:8-452
               
               
               Cow position:chr5:12731798-12731370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-452
               
               
               Cow position:chr5:27908357-27907926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr5:988150-987719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr5:10842467-10842032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 37

               
               
               Conread position:8-456
               
               
               Cow position:chr5:18121571-18121133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:8-456
               
               
               Cow position:chr5:26078282-26077844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:8-456
               
               
               Cow position:chr5:31707475-31707912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr5:32773677-32774114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr5:35301009-35301447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:8-456
               
               
               Cow position:chr5:59061548-59061985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-299
               
               
               Cow position:chr5:29670067-29670349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:9-445
               
               
               Cow position:chr5:21116666-21117095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):284, 50

               
               
               Conread position:10-456
               
               
               Cow position:chr5:47830165-47829728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:14-437
               
               
               Cow position:chr5:42505923-42506335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:14-452
               
               
               Cow position:chr5:3965365-3965794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:15-386
               
               
               Cow position:chr5:40923720-40923366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:16-282
               
               
               Cow position:chr5:52613036-52612783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:16-456
               
               
               Cow position:chr5:46777313-46777742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:17-456
               
               
               Cow position:chr5:4757256-4756834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr5:18664704-18665115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr5:23959408-23958981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr5:49519481-49519897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:18-434
               
               
               Cow position:chr5:49072731-49072336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:30-344
               
               
               Cow position:chr5:43193474-43193174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:30-456
               
               
               Cow position:chr5:7274777-7275183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:35-436
               
               
               Cow position:chr5:2738835-2739227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:38-456
               
               
               Cow position:chr5:23229934-23230333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:54-383
               
               
               Cow position:chr5:18273718-18274036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:59-456
               
               
               Cow position:chr5:18549117-18549511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):112, 91

               
               
               Conread position:61-576
               
               
               Cow position:chr5:46645907-46646423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 12

               
               
               Conread position:63-456
               
               
               Cow position:chr5:10813784-10813401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 87

               
               
               Conread position:73-383
               
               
               Cow position:chr5:27003212-27003514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):206, 59

               
               
               Conread position:113-456
               
               
               Cow position:chr5:61081197-61080861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):261, 17

               
               
               Conread position:115-464
               
               
               Cow position:chr5:52434757-52435094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:134-387
               
               
               Cow position:chr5:11115713-11115472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:138-456
               
               
               Cow position:chr5:55653803-55653496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:150-384
               
               
               Cow position:chr5:53624779-53624549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:161-441
               
               
               Cow position:chr5:13046707-13046993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:166-456
               
               
               Cow position:chr5:9038078-9037792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:180-452
               
               
               Cow position:chr5:34189986-34190259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:187-375
               
               
               Cow position:chr5:40757540-40757725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:198-456
               
               
               Cow position:chr5:35527034-35527277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:200-536
               
               
               Cow position:chr5:16917384-16917055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:202-452
               
               
               Cow position:chr5:53703124-53702883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:202-456
               
               
               Cow position:chr5:24295712-24295963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:203-453
               
               
               Cow position:chr5:69622680-69622936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:205-456
               
               
               Cow position:chr5:53945938-53946178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):170, 127

               
               
               Conread position:207-455
               
               
               Cow position:chr5:54620150-54620392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:209-406
               
               
               Cow position:chr5:18114479-18114280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 149

               
               
               Conread position:209-452
               
               
               Cow position:chr5:34298025-34298253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:255-466
               
               
               Cow position:chr5:62823645-62823845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:1-333
               
               
               Cow position:chr6:60931731-60932053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:1-335
               
               
               Cow position:chr6:15278769-15278449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-383
               
               
               Cow position:chr6:44262433-44262060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:1-386
               
               
               Cow position:chr6:7178242-7177868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:1-386
               
               
               Cow position:chr6:29312546-29312924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:1-398
               
               
               Cow position:chr6:11273854-11273477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):361, 40

               
               
               Conread position:1-427
               
               
               Cow position:chr6:27471625-27472033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-451
               
               
               Cow position:chr6:1535530-1535097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-452
               
               
               Cow position:chr6:50562-50121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-452
               
               
               Cow position:chr6:10632600-10633024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:1-452
               
               
               Cow position:chr6:40553529-40553098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr6:41228490-41228926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr6:51731135-51731563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 44

               
               
               Conread position:1-455
               
               
               Cow position:chr6:15140132-15139688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:703262-703698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:1821568-1821140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:3276327-3275881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:5948737-5948295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr6:8203230-8203676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:17047098-17047546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:21973715-21974157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:1-456
               
               
               Cow position:chr6:25360090-25360523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:1-456
               
               
               Cow position:chr6:25792712-25792270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr6:28133958-28134391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:1-456
               
               
               Cow position:chr6:34891079-34890639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr6:35875667-35875224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr6:39333824-39333386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr6:40866279-40865834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr6:55542219-55541769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-595
               
               
               Cow position:chr6:15926523-15925957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-451
               
               
               Cow position:chr6:27333039-27333475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:2-452
               
               
               Cow position:chr6:66546534-66546959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:3-299
               
               
               Cow position:chr6:32448863-32448567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:3-395
               
               
               Cow position:chr6:58065784-58066160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:4-432
               
               
               Cow position:chr6:33899201-33898805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):169, 22

               
               
               Conread position:5-452
               
               
               Cow position:chr6:30273845-30273411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:6-431
               
               
               Cow position:chr6:58027724-58028135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:6-456
               
               
               Cow position:chr6:3487381-3486937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr6:8760245-8759811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:8-360
               
               
               Cow position:chr6:9264140-9264483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-397
               
               
               Cow position:chr6:3784819-3785203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr6:13944961-13945399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr6:16053159-16053597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr6:28187765-28187333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr6:40276139-40276569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:8-456
               
               
               Cow position:chr6:43618775-43619210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr6:44149505-44149061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr6:58601535-58601965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr6:65820921-65820484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:8-509
               
               
               Cow position:chr6:50646132-50645641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-594
               
               
               Cow position:chr6:17597254-17596692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:389
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:10-594
               
               
               Cow position:chr6:40316639-40317196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:379
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:14-456
               
               
               Cow position:chr6:28490505-28490081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:16-397
               
               
               Cow position:chr6:64717085-64717455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 27

               
               
               Conread position:16-456
               
               
               Cow position:chr6:27170639-27171067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:17-452
               
               
               Cow position:chr6:45587010-45587434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:17-452
               
               
               Cow position:chr6:68027976-68028408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr6:2375747-2376166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:17-456
               
               
               Cow position:chr6:39910395-39910820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr6:40379572-40379144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:17-473
               
               
               Cow position:chr6:2877626-2877181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:22-428
               
               
               Cow position:chr6:66232874-66233264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:24-429
               
               
               Cow position:chr6:28169969-28170369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:28-429
               
               
               Cow position:chr6:28104788-28104404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:28-456
               
               
               Cow position:chr6:65842686-65843102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:30-357
               
               
               Cow position:chr6:13316398-13316077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:30-456
               
               
               Cow position:chr6:25215277-25215704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:30-456
               
               
               Cow position:chr6:46603173-46602756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:30-456
               
               
               Cow position:chr6:47042140-47041721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 43

               
               
               Conread position:30-456
               
               
               Cow position:chr6:51715605-51716019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:36-367
               
               
               Cow position:chr6:10250528-10250206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 131

               
               
               Conread position:41-360
               
               
               Cow position:chr6:59617199-59617501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:47-456
               
               
               Cow position:chr6:43792482-43792082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:52-377
               
               
               Cow position:chr6:65897875-65897564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:53-371
               
               
               Cow position:chr6:46573873-46574183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:62-456
               
               
               Cow position:chr6:10679535-10679903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:63-456
               
               
               Cow position:chr6:52694128-52694513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 71

               
               
               Conread position:97-344
               
               
               Cow position:chr6:87783-88016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):191, 35

               
               
               Conread position:102-456
               
               
               Cow position:chr6:47048038-47047694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):193, 40

               
               
               Conread position:104-386
               
               
               Cow position:chr6:34196525-34196797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:137-456
               
               
               Cow position:chr6:13848246-13848556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:138-456
               
               
               Cow position:chr6:28703532-28703223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:138-456
               
               
               Cow position:chr6:28766861-28766553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:144-387
               
               
               Cow position:chr6:64790513-64790750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:186-456
               
               
               Cow position:chr6:11871438-11871168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:191-456
               
               
               Cow position:chr6:476764-477025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:204-394
               
               
               Cow position:chr6:30677052-30676868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:205-456
               
               
               Cow position:chr6:3150469-3150721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:205-456
               
               
               Cow position:chr6:12626942-12627189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:212-448
               
               
               Cow position:chr6:20648843-20648616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:213-456
               
               
               Cow position:chr6:1404074-1403830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 192

               
               
               Conread position:213-456
               
               
               Cow position:chr6:1410140-1409896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 192

               
               
               Conread position:256-437
               
               
               Cow position:chr6:16995685-16995866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:272-456
               
               
               Cow position:chr6:5749226-5749411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:1-373
               
               
               Cow position:chr7:57211300-57211648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):268, 28

               
               
               Conread position:1-386
               
               
               Cow position:chr7:5663697-5664076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:1-389
               
               
               Cow position:chr7:58994720-58995085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 155

               
               
               Conread position:1-425
               
               
               Cow position:chr7:51015397-51015805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:1-428
               
               
               Cow position:chr7:59679988-59680399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:1-452
               
               
               Cow position:chr7:1371508-1371073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-455
               
               
               Cow position:chr7:14214230-14213800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr7:5261788-5261335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr7:10430287-10429848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr7:13532766-13532336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-456
               
               
               Cow position:chr7:14138459-14138017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr7:21126526-21126102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr7:21311588-21312031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:1-456
               
               
               Cow position:chr7:24878744-24878308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr7:27101154-27100712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr7:33332695-33333140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr7:34487050-34487490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr7:38397951-38398396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:1-456
               
               
               Cow position:chr7:42871279-42871719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr7:45948003-45947576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr7:57563961-57563528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr7:66905858-66906304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:1-458
               
               
               Cow position:chr7:21986562-21986982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 33

               
               
               Conread position:1-460
               
               
               Cow position:chr7:40268831-40268403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-482
               
               
               Cow position:chr7:41875140-41874685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:1-539
               
               
               Cow position:chr7:29368887-29368378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:358
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:2-396
               
               
               Cow position:chr7:63949908-63949530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 39

               
               
               Conread position:2-400
               
               
               Cow position:chr7:68439197-68439575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:2-456
               
               
               Cow position:chr7:20211929-20211514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):286, 39

               
               
               Conread position:2-471
               
               
               Cow position:chr7:59684923-59685401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:3-452
               
               
               Cow position:chr7:26852591-26853010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:6-456
               
               
               Cow position:chr7:21233867-21233428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:7-448
               
               
               Cow position:chr7:24807332-24806915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:8-437
               
               
               Cow position:chr7:66036317-66036729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-452
               
               
               Cow position:chr7:33311807-33311370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:8-456
               
               
               Cow position:chr7:6630158-6629723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr7:20060626-20061064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-593
               
               
               Cow position:chr7:20533093-20533655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:10-456
               
               
               Cow position:chr7:20514635-20514209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:10-456
               
               
               Cow position:chr7:65811966-65812399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:12-452
               
               
               Cow position:chr7:64239857-64239419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:17-429
               
               
               Cow position:chr7:526128-526517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):272, 5

               
               
               Conread position:17-452
               
               
               Cow position:chr7:55536774-55536354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:17-456
               
               
               Cow position:chr7:3156619-3157045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:17-456
               
               
               Cow position:chr7:3300016-3299591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr7:6721298-6721717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr7:52763433-52763862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:18-456
               
               
               Cow position:chr7:6647512-6647094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:19-456
               
               
               Cow position:chr7:53407748-53408153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:20-451
               
               
               Cow position:chr7:6646-7056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:28-380
               
               
               Cow position:chr7:19990179-19990519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:36-357
               
               
               Cow position:chr7:14695204-14695508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:52-456
               
               
               Cow position:chr7:445074-444682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):237, 7

               
               
               Conread position:52-456
               
               
               Cow position:chr7:61578692-61579078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:63-595
               
               
               Cow position:chr7:47975118-47974603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:70-456
               
               
               Cow position:chr7:62445942-62445575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:73-456
               
               
               Cow position:chr7:55041282-55040909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 77

               
               
               Conread position:77-423
               
               
               Cow position:chr7:43871712-43872047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):209, 73

               
               
               Conread position:85-456
               
               
               Cow position:chr7:27788170-27788532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):175, 38

               
               
               Conread position:91-456
               
               
               Cow position:chr7:48805215-48804859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:97-427
               
               
               Cow position:chr7:30303180-30303498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):166, 53

               
               
               Conread position:97-454
               
               
               Cow position:chr7:541732-541402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):191, 37

               
               
               Conread position:104-456
               
               
               Cow position:chr7:8143747-8143399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:105-397
               
               
               Cow position:chr7:40320432-40320702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):279, 28

               
               
               Conread position:142-404
               
               
               Cow position:chr7:39793130-39793396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:146-393
               
               
               Cow position:chr7:65452658-65452916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 190

               
               
               Conread position:185-395
               
               
               Cow position:chr7:61045920-61045704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:186-452
               
               
               Cow position:chr7:33405083-33404823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:194-456
               
               
               Cow position:chr7:20557052-20557320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 221

               
               
               Conread position:195-432
               
               
               Cow position:chr7:40006603-40006371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):184, 28

               
               
               Conread position:195-491
               
               
               Cow position:chr7:39097232-39096939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 201

               
               
               Conread position:196-470
               
               
               Cow position:chr7:31095954-31095678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 215

               
               
               Conread position:200-385
               
               
               Cow position:chr7:24934235-24934046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:204-423
               
               
               Cow position:chr7:34221506-34221287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:204-432
               
               
               Cow position:chr7:1403160-1402934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:205-428
               
               
               Cow position:chr7:996074-996292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):182, 96

               
               
               Conread position:207-390
               
               
               Cow position:chr7:27474093-27474274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:209-456
               
               
               Cow position:chr7:48635754-48635991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:210-381
               
               
               Cow position:chr7:34417148-34416976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:210-456
               
               
               Cow position:chr7:60856725-60856486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:211-456
               
               
               Cow position:chr7:54581187-54581434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 19

               
               
               Conread position:211-463
               
               
               Cow position:chr7:21313248-21313492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:215-456
               
               
               Cow position:chr7:65872266-65872032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):160, 20

               
               
               Conread position:220-456
               
               
               Cow position:chr7:18445412-18445180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:254-456
               
               
               Cow position:chr7:61809382-61809585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:276-456
               
               
               Cow position:chr7:6628007-6627828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:290-456
               
               
               Cow position:chr7:11462727-11462562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:297-456
               
               
               Cow position:chr7:23250039-23250197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:305-456
               
               
               Cow position:chr7:66070699-66070549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:1-298
               
               
               Cow position:chr8:25409051-25409336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:1-432
               
               
               Cow position:chr8:8400790-8400366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-452
               
               
               Cow position:chr8:17312352-17312815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr8:29007960-29008378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-452
               
               
               Cow position:chr8:33589701-33590142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:1347930-1347487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr8:3855702-3855261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr8:4687726-4688164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:7162220-7162661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:10742345-10741882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:19051771-19052215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:23771964-23772403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:24915012-24914558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:1-456
               
               
               Cow position:chr8:25523725-25524155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:25775349-25774897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr8:32318228-32317785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:1-456
               
               
               Cow position:chr8:36635184-36634746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr8:39194891-39194450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr8:41644349-41643923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr8:42485239-42485674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr8:47660996-47660558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chr8:50929795-50929342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:1-456
               
               
               Cow position:chr8:50995094-50995550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:1-456
               
               
               Cow position:chr8:51666499-51666053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:1-456
               
               
               Cow position:chr8:53427819-53428250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:1-594
               
               
               Cow position:chr8:23135288-23134721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:2-456
               
               
               Cow position:chr8:42579257-42578826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 24

               
               
               Conread position:2-458
               
               
               Cow position:chr8:14583653-14583217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:3-344
               
               
               Cow position:chr8:5681731-5681411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-387
               
               
               Cow position:chr8:47674174-47674542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 56

               
               
               Conread position:4-356
               
               
               Cow position:chr8:21790175-21790512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:5-593
               
               
               Cow position:chr8:31984457-31985022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:6-380
               
               
               Cow position:chr8:54017222-54016859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr8:14590572-14590115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:7-456
               
               
               Cow position:chr8:12450352-12450807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:7-456
               
               
               Cow position:chr8:42419098-42418675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 35

               
               
               Conread position:8-429
               
               
               Cow position:chr8:27579725-27580136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-436
               
               
               Cow position:chr8:25377312-25377723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-452
               
               
               Cow position:chr8:2887080-2887512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:8-452
               
               
               Cow position:chr8:34349001-34349430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-454
               
               
               Cow position:chr8:47075490-47075918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:8-456
               
               
               Cow position:chr8:9736572-9737012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:8-456
               
               
               Cow position:chr8:10749692-10750114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr8:14631340-14630900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr8:22570979-22570541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr8:37932421-37932859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr8:47454269-47453835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-594
               
               
               Cow position:chr8:1152972-1152388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:9-371
               
               
               Cow position:chr8:12801746-12802091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 32

               
               
               Conread position:9-456
               
               
               Cow position:chr8:42656656-42656228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:9-456
               
               
               Cow position:chr8:46218408-46217991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 32

               
               
               Conread position:10-456
               
               
               Cow position:chr8:32041425-32040999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):286, 31

               
               
               Conread position:10-456
               
               
               Cow position:chr8:32630698-32630270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 31

               
               
               Conread position:10-456
               
               
               Cow position:chr8:33325378-33325814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 123

               
               
               Conread position:12-429
               
               
               Cow position:chr8:46051516-46051922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:12-456
               
               
               Cow position:chr8:14927546-14927121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 22

               
               
               Conread position:14-383
               
               
               Cow position:chr8:60061739-60062089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 8

               
               
               Conread position:14-456
               
               
               Cow position:chr8:39819769-39820215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):211, 394

               
               
               Conread position:16-337
               
               
               Cow position:chr8:13491703-13492013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:17-260
               
               
               Cow position:chr8:35213197-35213430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:17-456
               
               
               Cow position:chr8:32436743-32436316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:18-368
               
               
               Cow position:chr8:22128913-22129250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:19-456
               
               
               Cow position:chr8:21157451-21157026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:22-386
               
               
               Cow position:chr8:11763275-11763643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:24-456
               
               
               Cow position:chr8:2169179-2168757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:30-349
               
               
               Cow position:chr8:38605859-38605555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:30-357
               
               
               Cow position:chr8:6064436-6064117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:30-456
               
               
               Cow position:chr8:34109227-34109643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:34-428
               
               
               Cow position:chr8:58185234-58184858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 33

               
               
               Conread position:36-307
               
               
               Cow position:chr8:1117876-1118136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:36-398
               
               
               Cow position:chr8:2235626-2235266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:37-422
               
               
               Cow position:chr8:9061517-9061878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:48-452
               
               
               Cow position:chr8:42469031-42469421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:56-389
               
               
               Cow position:chr8:49697611-49697291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):235, 33

               
               
               Conread position:59-452
               
               
               Cow position:chr8:6726617-6726229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:63-456
               
               
               Cow position:chr8:55085921-55086293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:76-383
               
               
               Cow position:chr8:28878411-28878706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):209, 56

               
               
               Conread position:95-402
               
               
               Cow position:chr8:31251918-31252204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):239, 55

               
               
               Conread position:106-456
               
               
               Cow position:chr8:14256503-14256843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:123-456
               
               
               Cow position:chr8:6764847-6764526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):166, 27

               
               
               Conread position:124-456
               
               
               Cow position:chr8:38392054-38392390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:143-450
               
               
               Cow position:chr8:27727167-27727468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):142, 23

               
               
               Conread position:183-379
               
               
               Cow position:chr8:45986805-45986994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:186-452
               
               
               Cow position:chr8:18054229-18054485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 42

               
               
               Conread position:194-387
               
               
               Cow position:chr8:16090358-16090542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:205-456
               
               
               Cow position:chr8:14255694-14255946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:209-443
               
               
               Cow position:chr8:24871257-24871039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:209-456
               
               
               Cow position:chr8:45794236-45793988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:213-456
               
               
               Cow position:chr8:59261419-59261181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:214-456
               
               
               Cow position:chr8:3748680-3748437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:217-456
               
               
               Cow position:chr8:21584712-21584952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):158, 80

               
               
               Conread position:220-456
               
               
               Cow position:chr8:11834047-11834289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):49, 125

               
               
               Conread position:257-574
               
               
               Cow position:chr8:38576633-38576333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:260-443
               
               
               Cow position:chr8:38584553-38584371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:269-456
               
               
               Cow position:chr8:12313831-12313640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-304
               
               
               Cow position:chr9:28655327-28655613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-371
               
               
               Cow position:chr9:10322777-10323136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-383
               
               
               Cow position:chr9:44819122-44819486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:1-387
               
               
               Cow position:chr9:8165906-8165529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):284, 25

               
               
               Conread position:1-387
               
               
               Cow position:chr9:50698277-50698649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:1-395
               
               
               Cow position:chr9:16176743-16177109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-398
               
               
               Cow position:chr9:4282941-4283342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:1-423
               
               
               Cow position:chr9:25188073-25188480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:1-444
               
               
               Cow position:chr9:3167901-3168312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:1-450
               
               
               Cow position:chr9:24980950-24980528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:1-451
               
               
               Cow position:chr9:1981248-1981671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:1-451
               
               
               Cow position:chr9:59537072-59537511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr9:5141688-5142109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:1-452
               
               
               Cow position:chr9:6250273-6250713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-455
               
               
               Cow position:chr9:3727576-3727998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:1-456
               
               
               Cow position:chr9:2212113-2212556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:307
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:1-456
               
               
               Cow position:chr9:2871303-2871749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr9:3005262-3004828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr9:4533463-4533910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:1-456
               
               
               Cow position:chr9:17063408-17062968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chr9:18508848-18508410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr9:19158565-19158117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr9:20939296-20939727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-456
               
               
               Cow position:chr9:21410271-21410723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr9:22654550-22654995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:1-456
               
               
               Cow position:chr9:27783161-27783601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:1-456
               
               
               Cow position:chr9:31808551-31808991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr9:32969922-32970359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:1-456
               
               
               Cow position:chr9:51181203-51180763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chr9:59481822-59481381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:2-324
               
               
               Cow position:chr9:29329612-29329917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:2-455
               
               
               Cow position:chr9:651052-650613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:2-462
               
               
               Cow position:chr9:54925529-54925961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 39

               
               
               Conread position:3-398
               
               
               Cow position:chr9:6977307-6977687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:4-431
               
               
               Cow position:chr9:35315902-35315499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:4-452
               
               
               Cow position:chr9:4649621-4649195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 37

               
               
               Conread position:6-397
               
               
               Cow position:chr9:2497998-2497610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:6-432
               
               
               Cow position:chr9:1995411-1994994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr9:7158968-7158524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:6-456
               
               
               Cow position:chr9:10937574-10938009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:6-456
               
               
               Cow position:chr9:28022785-28023216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:7-456
               
               
               Cow position:chr9:4942827-4942392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:7-456
               
               
               Cow position:chr9:17304996-17304559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:7-456
               
               
               Cow position:chr9:29027231-29026791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:7-456
               
               
               Cow position:chr9:37161833-37161398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:7-458
               
               
               Cow position:chr9:828127-827691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:8-342
               
               
               Cow position:chr9:8284091-8283769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:8-437
               
               
               Cow position:chr9:46859481-46859062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr9:30827718-30828157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chr9:50791694-50792129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chr9:51211662-51212099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:10-456
               
               
               Cow position:chr9:47042942-47043376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:12-456
               
               
               Cow position:chr9:5004957-5005401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 40

               
               
               Conread position:12-456
               
               
               Cow position:chr9:42310664-42311094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:14-455
               
               
               Cow position:chr9:7003715-7004146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:16-452
               
               
               Cow position:chr9:30673360-30673791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:17-437
               
               
               Cow position:chr9:1251010-1250600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr9:779831-779403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr9:3309617-3310030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 24

               
               
               Conread position:17-456
               
               
               Cow position:chr9:44384250-44384679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:18-452
               
               
               Cow position:chr9:31065709-31066130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:21-456
               
               
               Cow position:chr9:59447513-59447924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):268, 31

               
               
               Conread position:28-389
               
               
               Cow position:chr9:59428010-59428356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:28-456
               
               
               Cow position:chr9:47003184-47003593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:30-373
               
               
               Cow position:chr9:3543852-3544216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:52-371
               
               
               Cow position:chr9:21110561-21110870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):238, 41

               
               
               Conread position:54-456
               
               
               Cow position:chr9:38677170-38677560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:67-387
               
               
               Cow position:chr9:4836301-4835992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 83

               
               
               Conread position:76-456
               
               
               Cow position:chr9:25034515-25034145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:88-395
               
               
               Cow position:chr9:17901502-17901209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:92-500
               
               
               Cow position:chr9:20176651-20176249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:96-403
               
               
               Cow position:chr9:8402439-8402731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:97-456
               
               
               Cow position:chr9:35595009-35594667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:116-437
               
               
               Cow position:chr9:30191294-30190991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:118-456
               
               
               Cow position:chr9:2679360-2679683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:138-456
               
               
               Cow position:chr9:27036017-27036318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:145-432
               
               
               Cow position:chr9:34724628-34724899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):261, 47

               
               
               Conread position:146-456
               
               
               Cow position:chr9:7105312-7105012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:161-451
               
               
               Cow position:chr9:3224513-3224229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:200-456
               
               
               Cow position:chr9:12912939-12913194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:203-453
               
               
               Cow position:chr9:42185955-42185716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 156

               
               
               Conread position:205-456
               
               
               Cow position:chr9:45874688-45874933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:205-456
               
               
               Cow position:chr9:50094076-50093821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 203

               
               
               Conread position:209-452
               
               
               Cow position:chr9:26567772-26568015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:211-456
               
               
               Cow position:chr9:9562873-9562634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:214-456
               
               
               Cow position:chr9:1638033-1638270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 132

               
               
               Conread position:241-456
               
               
               Cow position:chr9:8781708-8781493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:270-456
               
               
               Cow position:chr9:64015441-64015254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:290-456
               
               
               Cow position:chr9:26737165-26737326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 9

               
               
               Conread position:1-271
               
               
               Cow position:chrX:23132848-23133104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-316
               
               
               Cow position:chrX:10416574-10416269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:1-371
               
               
               Cow position:chrX:13082133-13081771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):63, 79

               
               
               Conread position:1-383
               
               
               Cow position:chrX:34219191-34219549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):65, 134

               
               
               Conread position:1-387
               
               
               Cow position:chrX:18553310-18553677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:1-397
               
               
               Cow position:chrX:27961739-27962123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-397
               
               
               Cow position:chrX:29885869-29886258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 149

               
               
               Conread position:1-424
               
               
               Cow position:chrX:35940369-35939985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 40

               
               
               Conread position:1-428
               
               
               Cow position:chrX:21269175-21268754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:1-429
               
               
               Cow position:chrX:10385186-10385588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:1-431
               
               
               Cow position:chrX:13182245-13181855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:1-432
               
               
               Cow position:chrX:41102585-41102171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:1-450
               
               
               Cow position:chrX:28868365-28867929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-452
               
               
               Cow position:chrX:18242049-18242470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):240, 41

               
               
               Conread position:1-456
               
               
               Cow position:chrX:971663-972091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:1547859-1548302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chrX:2481751-2481307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:7031343-7031789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:1-456
               
               
               Cow position:chrX:13075816-13075376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-456
               
               
               Cow position:chrX:15126349-15125907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:1-456
               
               
               Cow position:chrX:17666904-17666471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:1-456
               
               
               Cow position:chrX:18952801-18952355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:21580346-21580808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:21830410-21830835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:22489023-22489479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:1-456
               
               
               Cow position:chrX:23277907-23278346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 49

               
               
               Conread position:1-456
               
               
               Cow position:chrX:23389635-23389196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 33

               
               
               Conread position:1-456
               
               
               Cow position:chrX:23455137-23454696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chrX:26757734-26757308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chrX:27316156-27316601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:27593107-27592663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:1-456
               
               
               Cow position:chrX:29097076-29097519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:1-456
               
               
               Cow position:chrX:30138696-30138254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:1-456
               
               
               Cow position:chrX:30170950-30170527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-456
               
               
               Cow position:chrX:30231216-30230777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:1-456
               
               
               Cow position:chrX:36136672-36136241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-456
               
               
               Cow position:chrX:44388644-44389087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:1-456
               
               
               Cow position:chrX:45377220-45376769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:1-590
               
               
               Cow position:chrX:41888115-41887559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:2-402
               
               
               Cow position:chrX:20798202-20798581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:2-456
               
               
               Cow position:chrX:35386298-35385888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):269, 32

               
               
               Conread position:3-420
               
               
               Cow position:chrX:19726114-19725696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:3-425
               
               
               Cow position:chrX:15118187-15117789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:3-434
               
               
               Cow position:chrX:24523629-24524060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:3-494
               
               
               Cow position:chrX:3626362-3626817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:4-349
               
               
               Cow position:chrX:8574607-8574278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:4-387
               
               
               Cow position:chrX:19875395-19875766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:5-321
               
               
               Cow position:chrX:4411532-4411839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:6-452
               
               
               Cow position:chrX:30057938-30058367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:6-456
               
               
               Cow position:chrX:26528861-26529287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:6-456
               
               
               Cow position:chrX:31199447-31199881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:6-460
               
               
               Cow position:chrX:30183051-30182602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 39

               
               
               Conread position:7-428
               
               
               Cow position:chrX:27495567-27496009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:7-452
               
               
               Cow position:chrX:15600047-15600464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:7-456
               
               
               Cow position:chrX:8589049-8589486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:7-462
               
               
               Cow position:chrX:4752740-4752303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:8-372
               
               
               Cow position:chrX:5864281-5864636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-388
               
               
               Cow position:chrX:8610813-8610447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-433
               
               
               Cow position:chrX:12287516-12287103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:8-437
               
               
               Cow position:chrX:17477537-17477118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-437
               
               
               Cow position:chrX:28626740-28626317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:8-452
               
               
               Cow position:chrX:28585867-28586300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-452
               
               
               Cow position:chrX:37015010-37015435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:8-456
               
               
               Cow position:chrX:2561972-2561537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:2577313-2577747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:2815594-2815160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:2858488-2858054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:6872183-6871752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:8-456
               
               
               Cow position:chrX:8962686-8962250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:11148448-11148011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:8-456
               
               
               Cow position:chrX:11422758-11423194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:12354123-12354560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:8-456
               
               
               Cow position:chrX:12702816-12702381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:13096372-13095937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:13397331-13396894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:8-456
               
               
               Cow position:chrX:15980071-15979634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:16463428-16462995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:24324686-24324242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:27425438-27424999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:27619246-27618808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:29172875-29172443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:29910542-29910104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-456
               
               
               Cow position:chrX:30011886-30012322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:8-550
               
               
               Cow position:chrX:5335598-5335050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:9-502
               
               
               Cow position:chrX:24134371-24133909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:10-452
               
               
               Cow position:chrX:28561003-28560571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:11-456
               
               
               Cow position:chrX:1834709-1835136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:12-437
               
               
               Cow position:chrX:28650661-28650247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:14-456
               
               
               Cow position:chrX:7752794-7753231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:14-456
               
               
               Cow position:chrX:9009232-9009662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:16-413
               
               
               Cow position:chrX:26578569-26578951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:16-456
               
               
               Cow position:chrX:3084242-3083814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:16-456
               
               
               Cow position:chrX:16811548-16811122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:16-458
               
               
               Cow position:chrX:5322830-5322402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:17-380
               
               
               Cow position:chrX:7482530-7482882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:17-452
               
               
               Cow position:chrX:37813050-37813471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-454
               
               
               Cow position:chrX:674306-673884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chrX:3375012-3374586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chrX:12480890-12481320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:17-456
               
               
               Cow position:chrX:14595744-14596170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-456
               
               
               Cow position:chrX:30201835-30201414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:17-456
               
               
               Cow position:chrX:35530749-35531178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:17-462
               
               
               Cow position:chrX:3467750-3467315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:18-345
               
               
               Cow position:chrX:29778613-29778301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:19-290
               
               
               Cow position:chrX:22618411-22618151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:20-391
               
               
               Cow position:chrX:5308840-5308491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):269, 21

               
               
               Conread position:22-428
               
               
               Cow position:chrX:20695916-20695532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:23-456
               
               
               Cow position:chrX:21644006-21643579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:24-446
               
               
               Cow position:chrX:27390298-27389888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:27-456
               
               
               Cow position:chrX:21491061-21491482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 36

               
               
               Conread position:28-386
               
               
               Cow position:chrX:15486862-15486525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:28-450
               
               
               Cow position:chrX:26426673-26426277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:34-456
               
               
               Cow position:chrX:28521683-28521282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:38-465
               
               
               Cow position:chrX:46235659-46236075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:44-456
               
               
               Cow position:chrX:27083889-27084291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:53-456
               
               
               Cow position:chrX:18451910-18452304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:63-430
               
               
               Cow position:chrX:47396590-47396234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:67-396
               
               
               Cow position:chrX:17609378-17609053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:73-430
               
               
               Cow position:chrX:2535117-2534770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 77

               
               
               Conread position:75-456
               
               
               Cow position:chrX:5356869-5356502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 75

               
               
               Conread position:77-445
               
               
               Cow position:chrX:3621259-3621620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 74

               
               
               Conread position:82-456
               
               
               Cow position:chrX:24771902-24771539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):143, 68

               
               
               Conread position:112-456
               
               
               Cow position:chrX:20035412-20035077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:112-456
               
               
               Cow position:chrX:26399138-26398803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:117-450
               
               
               Cow position:chrX:16684841-16684519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:117-456
               
               
               Cow position:chrX:13447831-13447503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:175-458
               
               
               Cow position:chrX:23072212-23072487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:186-456
               
               
               Cow position:chrX:21753376-21753115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:186-456
               
               
               Cow position:chrX:32123113-32123379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:189-396
               
               
               Cow position:chrX:24112462-24112249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 162

               
               
               Conread position:194-456
               
               
               Cow position:chrX:28506213-28505946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:194-456
               
               
               Cow position:chrX:28757589-28757321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 218

               
               
               Conread position:202-397
               
               
               Cow position:chrX:8938694-8938492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:205-428
               
               
               Cow position:chrX:39694716-39694942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 207

               
               
               Conread position:205-594
               
               
               Cow position:chrX:4330228-4329855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:208-433
               
               
               Cow position:chrX:22567183-22566954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):17, 205

               
               
               Conread position:209-456
               
               
               Cow position:chrX:22816912-22817162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 193

               
               
               Conread position:211-452
               
               
               Cow position:chrX:12284019-12284254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:213-452
               
               
               Cow position:chrX:36251236-36250995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:221-432
               
               
               Cow position:chrX:23343533-23343317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 199

               
               
               Conread position:226-452
               
               
               Cow position:chrX:31510719-31510937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:231-451
               
               
               Cow position:chrX:16700797-16701013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:240-460
               
               
               Cow position:chrX:25071373-25071154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 154

               
               
               Conread position:254-550
               
               
               Cow position:chrX:23133310-23133608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:255-456
               
               
               Cow position:chrX:20333440-20333238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:256-456
               
               
               Cow position:chrX:20019004-20019205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:271-456
               
               
               Cow position:chrX:5393710-5393524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:280-456
               
               
               Cow position:chrX:37850277-37850454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:290-456
               
               
               Cow position:chrX:37957897-37957732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:292-595
               
               
               Cow position:chrX:10415010-10414699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 178

               
               
               Conread position:297-595
               
               
               Cow position:chrX:6249407-6249110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 117
Conread position:	1-311
Cow position:	chr1:102813323-102813620 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	211
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	16, 51
Conread position:	1-322
Cow position:	chr1:57569094-57569404 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	229
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	23, 44
Conread position:	1-360
Cow position:	chr1:30519723-30520070 (view UCSC Genome Browser custom track)
Alignm length:	364
Alignm identity:	259
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 41
Conread position:	1-386
Cow position:	chr1:24652404-24652766 (view UCSC Genome Browser custom track)
Alignm length:	387
Alignm identity:	269
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	66, 40
Conread position:	1-396
Cow position:	chr1:57697034-57696651 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	65, 40
Conread position:	1-400
Cow position:	chr1:81777560-81777942 (view UCSC Genome Browser custom track)
Alignm length:	403
Alignm identity:	276
Alignm E-value:	7.00649e-44
Alignm gaps (pig, cow):	287, 33
Conread position:	1-430
Cow position:	chr1:86611262-86611675 (view UCSC Genome Browser custom track)
Alignm length:	436
Alignm identity:	305
Alignm E-value:	0
Alignm gaps (pig, cow):	63, 41
Conread position:	1-437
Cow position:	chr1:89495091-89494660 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	302
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	63, 28
Conread position:	1-452
Cow position:	chr1:26517761-26517324 (view UCSC Genome Browser custom track)
Alignm length:	459
Alignm identity:	330
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 33
Conread position:	1-454
Cow position:	chr1:55155875-55155444 (view UCSC Genome Browser custom track)
Alignm length:	461
Alignm identity:	311
Alignm E-value:	6.00036e-42
Alignm gaps (pig, cow):	66, 41
Conread position:	1-455
Cow position:	chr1:33713195-33713639 (view UCSC Genome Browser custom track)
Alignm length:	463
Alignm identity:	340
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 33
Conread position:	1-456
Cow position:	chr1:3934132-3933688 (view UCSC Genome Browser custom track)
Alignm length:	458
Alignm identity:	324
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 44
Conread position:	1-589
Cow position:	chr1:7409259-7408712 (view UCSC Genome Browser custom track)
Alignm length:	595
Alignm identity:	382
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	66, 28
Conread position:	1-590
Cow position:	chr1:30063492-30064060 (view UCSC Genome Browser custom track)
Alignm length:	604
Alignm identity:	407
Alignm E-value:	0
Alignm gaps (pig, cow):	63, 46
Conread position:	2-382
Cow position:	chr1:31359536-31359899 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	265
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	62, 11
Conread position:	2-452
Cow position:	chr1:47162503-47162069 (view UCSC Genome Browser custom track)
Alignm length:	461
Alignm identity:	317
Alignm E-value:	0
Alignm gaps (pig, cow):	40, 145
Conread position:	2-456
Cow position:	chr1:13581853-13581419 (view UCSC Genome Browser custom track)
Alignm length:	460
Alignm identity:	324
Alignm E-value:	0
Alignm gaps (pig, cow):	286, 39
Conread position:	3-456
Cow position:	chr1:73197896-73197463 (view UCSC Genome Browser custom track)
Alignm length:	460
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	61, 38
Conread position:	6-456
Cow position:	chr1:56193036-56192595 (view UCSC Genome Browser custom track)
Alignm length:	457
Alignm identity:	321
Alignm E-value:	0
Alignm gaps (pig, cow):	46, 131
Conread position:	7-452
Cow position:	chr1:79455822-79455388 (view UCSC Genome Browser custom track)
Alignm length:	449
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 38