Non-Coding RNA Search

Cow genome map


           Conread name:
           Lng1-LNG010086A07
        

               Conread position:
               289-525
               

               Cow position:
               chr1:82652358-82652595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               30, 174
               

               Conread position:
               294-749
               

               Cow position:
               chr1:88635105-88635573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 37
               

               Conread position:
               294-752
               

               Cow position:
               chr1:87244526-87245016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 121
               

               Conread position:
               294-753
               

               Cow position:
               chr1:99349291-99348831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 208
               

               Conread position:
               295-520
               

               Cow position:
               chr1:5501702-5501929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-534
               

               Cow position:
               chr1:88130485-88130724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               19, 228
               

               Conread position:
               295-648
               

               Cow position:
               chr1:17942085-17941715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               295-657
               

               Cow position:
               chr1:69922736-69922361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-712
               

               Cow position:
               chr1:3386279-3385845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 105
               

               Conread position:
               295-716
               

               Cow position:
               chr1:55775881-55776316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 164
               

               Conread position:
               295-750
               

               Cow position:
               chr1:102435301-102434835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-751
               

               Cow position:
               chr1:58335564-58336039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 342
               

               Conread position:
               295-751
               

               Cow position:
               chr1:100597655-100597169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 116
               

               Conread position:
               295-753
               

               Cow position:
               chr1:13645461-13645918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 36
               

               Conread position:
               295-753
               

               Cow position:
               chr1:22000230-21999751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr1:25180304-25179824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr1:28872804-28873280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 294
               

               Conread position:
               295-753
               

               Cow position:
               chr1:33550650-33551124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 120
               

               Conread position:
               295-753
               

               Cow position:
               chr1:42736184-42736659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 293
               

               Conread position:
               295-753
               

               Cow position:
               chr1:56144603-56144132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 130
               

               Conread position:
               295-753
               

               Cow position:
               chr1:56194204-56193725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 148
               

               Conread position:
               295-753
               

               Cow position:
               chr1:57367405-57366926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 178
               

               Conread position:
               295-753
               

               Cow position:
               chr1:57567677-57568158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr1:68607821-68607337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr1:69402719-69403186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 289
               

               Conread position:
               295-753
               

               Cow position:
               chr1:72187144-72186666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 111
               

               Conread position:
               295-753
               

               Cow position:
               chr1:76545813-76545333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 109
               

               Conread position:
               295-753
               

               Cow position:
               chr1:76623218-76622751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 109
               

               Conread position:
               295-753
               

               Cow position:
               chr1:79336077-79335598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 111
               

               Conread position:
               295-753
               

               Cow position:
               chr1:93854247-93854727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               297-753
               

               Cow position:
               chr1:59933284-59933746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               316
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               297-753
               

               Cow position:
               chr1:72656710-72657193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 38
               

               Conread position:
               298-525
               

               Cow position:
               chr1:43019855-43020082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               21, 157
               

               Conread position:
               298-666
               

               Cow position:
               chr1:59674222-59674594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 24
               

               Conread position:
               298-678
               

               Cow position:
               chr1:28801695-28801291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               298-751
               

               Cow position:
               chr1:52359545-52359073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 22
               

               Conread position:
               298-753
               

               Cow position:
               chr1:1461597-1461125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 319
               

               Conread position:
               298-753
               

               Cow position:
               chr1:33711792-33712270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 38
               

               Conread position:
               298-753
               

               Cow position:
               chr1:56489569-56490047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               298-753
               

               Cow position:
               chr1:78289612-78290070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 225
               

               Conread position:
               299-453
               

               Cow position:
               chr1:28722523-28722679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               299-748
               

               Cow position:
               chr1:99374704-99375158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               289
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               23, 307
               

               Conread position:
               300-499
               

               Cow position:
               chr1:76703635-76703444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 33
               

               Conread position:
               300-753
               

               Cow position:
               chr1:18244656-18244178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 256
               

               Conread position:
               300-753
               

               Cow position:
               chr1:38414541-38415004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 71
               

               Conread position:
               300-753
               

               Cow position:
               chr1:49974458-49973984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 157
               

               Conread position:
               300-753
               

               Cow position:
               chr1:52233366-52232909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               300-753
               

               Cow position:
               chr1:69536641-69537106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               300-753
               

               Cow position:
               chr1:87207679-87207221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 116
               

               Conread position:
               300-753
               

               Cow position:
               chr1:89899968-89899497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 65
               

               Conread position:
               300-753
               

               Cow position:
               chr1:97123566-97124013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 65
               

               Conread position:
               300-753
               

               Cow position:
               chr1:101858247-101857779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 76
               

               Conread position:
               301-486
               

               Cow position:
               chr1:29361741-29361928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-532
               

               Cow position:
               chr1:87449686-87449917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               18, 215
               

               Conread position:
               301-574
               

               Cow position:
               chr1:89809883-89809602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               121, 21
               

               Conread position:
               301-616
               

               Cow position:
               chr1:6708358-6708031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               18, 102
               

               Conread position:
               301-715
               

               Cow position:
               chr1:79920994-79920562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-749
               

               Cow position:
               chr1:56163064-56163529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 44
               

               Conread position:
               301-749
               

               Cow position:
               chr1:89425323-89425789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 141
               

               Conread position:
               301-753
               

               Cow position:
               chr1:8554061-8554535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr1:11292371-11291900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 347
               

               Conread position:
               301-753
               

               Cow position:
               chr1:13449924-13450413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 424
               

               Conread position:
               301-753
               

               Cow position:
               chr1:18880652-18880186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 121
               

               Conread position:
               301-753
               

               Cow position:
               chr1:33851012-33851485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 230
               

               Conread position:
               301-753
               

               Cow position:
               chr1:39543504-39543976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 349
               

               Conread position:
               301-753
               

               Cow position:
               chr1:40053092-40053562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 18
               

               Conread position:
               301-753
               

               Cow position:
               chr1:40684952-40684484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               301-753
               

               Cow position:
               chr1:59210401-59209932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 141
               

               Conread position:
               301-753
               

               Cow position:
               chr1:62925346-62925820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr1:80359432-80358974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 102
               

               Conread position:
               301-753
               

               Cow position:
               chr1:82564238-82564710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               301-753
               

               Cow position:
               chr1:85781044-85780574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 355
               

               Conread position:
               303-711
               

               Cow position:
               chr1:13879871-13880297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               303-751
               

               Cow position:
               chr1:62854093-62853641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 104
               

               Conread position:
               303-753
               

               Cow position:
               chr1:42290126-42290594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 281
               

               Conread position:
               304-695
               

               Cow position:
               chr1:29950571-29950176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               28, 138
               

               Conread position:
               304-753
               

               Cow position:
               chr1:55276749-55276278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               304-753
               

               Cow position:
               chr1:69766202-69766669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 68
               

               Conread position:
               305-477
               

               Cow position:
               chr1:53198530-53198704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               305-500
               

               Cow position:
               chr1:89478785-89478970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               305-753
               

               Cow position:
               chr1:17012998-17012532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 250
               

               Conread position:
               305-753
               

               Cow position:
               chr1:31366340-31365870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 164
               

               Conread position:
               305-753
               

               Cow position:
               chr1:33895417-33895886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               305-753
               

               Cow position:
               chr1:38387893-38387474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               313
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               305-753
               

               Cow position:
               chr1:57656298-57656751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 18
               

               Conread position:
               305-753
               

               Cow position:
               chr1:79637193-79636728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 77
               

               Conread position:
               305-753
               

               Cow position:
               chr1:85791430-85791893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 67
               

               Conread position:
               305-753
               

               Cow position:
               chr1:86699480-86699011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 332
               

               Conread position:
               305-753
               

               Cow position:
               chr1:91718898-91718432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 340
               

               Conread position:
               305-753
               

               Cow position:
               chr1:97226962-97226504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 119
               

               Conread position:
               306-448
               

               Cow position:
               chr1:72119891-72120034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               306-503
               

               Cow position:
               chr1:55323781-55323583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               11, 56
               

               Conread position:
               306-615
               

               Cow position:
               chr1:40953456-40953762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 12
               

               Conread position:
               306-709
               

               Cow position:
               chr1:52918876-52918465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               306-743
               

               Cow position:
               chr1:25549801-25550249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 311
               

               Conread position:
               306-753
               

               Cow position:
               chr1:63606045-63605575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               306-753
               

               Cow position:
               chr1:76752912-76752447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 100
               

               Conread position:
               306-753
               

               Cow position:
               chr1:89770944-89770478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 84
               

               Conread position:
               306-753
               

               Cow position:
               chr1:102548973-102549452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 24
               

               Conread position:
               307-647
               

               Cow position:
               chr1:87969090-87969442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 46
               

               Conread position:
               307-709
               

               Cow position:
               chr1:86608945-86609347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               275
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               245, 21
               

               Conread position:
               307-751
               

               Cow position:
               chr1:62244906-62244443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 49
               

               Conread position:
               307-753
               

               Cow position:
               chr1:30027800-30027340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 12
               

               Conread position:
               307-753
               

               Cow position:
               chr1:63501200-63501660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 95
               

               Conread position:
               308-639
               

               Cow position:
               chr1:40513756-40513415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               308-712
               

               Cow position:
               chr1:80556309-80555913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 86
               

               Conread position:
               308-753
               

               Cow position:
               chr1:79457226-79456766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 159
               

               Conread position:
               309-753
               

               Cow position:
               chr1:89740501-89740062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 107
               

               Conread position:
               310-651
               

               Cow position:
               chr1:62806063-62805707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               310-716
               

               Cow position:
               chr1:31331045-31330625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               61, 99
               

               Conread position:
               310-753
               

               Cow position:
               chr1:72981010-72981473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 327
               

               Conread position:
               311-753
               

               Cow position:
               chr1:25887399-25886954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               318
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 54
               

               Conread position:
               311-753
               

               Cow position:
               chr1:34689088-34689546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 8
               

               Conread position:
               312-753
               

               Cow position:
               chr1:61308747-61309209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               312-753
               

               Cow position:
               chr1:86548385-86547928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 12
               

               Conread position:
               313-525
               

               Cow position:
               chr1:31396162-31396372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               112, 90
               

               Conread position:
               313-753
               

               Cow position:
               chr1:17036812-17036350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               313-753
               

               Cow position:
               chr1:20828635-20829096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               313-753
               

               Cow position:
               chr1:67835392-67834933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 294
               

               Conread position:
               313-753
               

               Cow position:
               chr1:71562829-71562367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 92
               

               Conread position:
               313-753
               

               Cow position:
               chr1:91898746-91899203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               313-753
               

               Cow position:
               chr1:101149589-101150039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 91
               

               Conread position:
               314-753
               

               Cow position:
               chr1:8824809-8825257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 89
               

               Conread position:
               314-753
               

               Cow position:
               chr1:67286235-67286693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 139
               

               Conread position:
               315-753
               

               Cow position:
               chr1:30283788-30283336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 101
               

               Conread position:
               315-753
               

               Cow position:
               chr1:82918910-82918458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 126
               

               Conread position:
               316-749
               

               Cow position:
               chr1:40307816-40308265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 91
               

               Conread position:
               319-567
               

               Cow position:
               chr1:22864166-22863905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               331-685
               

               Cow position:
               chr1:82407576-82407211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               195, 72
               

               Conread position:
               335-751
               

               Cow position:
               chr1:98783822-98784254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 155
               

               Conread position:
               335-753
               

               Cow position:
               chr1:18406422-18405991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 189
               

               Conread position:
               338-753
               

               Cow position:
               chr1:45097479-45097903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 78
               

               Conread position:
               342-751
               

               Cow position:
               chr1:72136418-72136844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 60
               

               Conread position:
               345-753
               

               Cow position:
               chr1:56722933-56723361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 409
               

               Conread position:
               346-744
               

               Cow position:
               chr1:5318542-5318940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               266
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               74, 13
               

               Conread position:
               347-716
               

               Cow position:
               chr1:82355508-82355885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               85, 265
               

               Conread position:
               347-753
               

               Cow position:
               chr1:21087197-21087620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 25
               

               Conread position:
               350-525
               

               Cow position:
               chr1:85881525-85881701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               351-596
               

               Cow position:
               chr1:21541345-21541600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               70, 35
               

               Conread position:
               353-753
               

               Cow position:
               chr1:72080558-72080985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               356-753
               

               Cow position:
               chr1:79109086-79109488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               178, 52
               

               Conread position:
               365-753
               

               Cow position:
               chr1:91893313-91892917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 69
               

               Conread position:
               376-753
               

               Cow position:
               chr1:28710725-28711123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               386-716
               

               Cow position:
               chr1:19992855-19992517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               95, 21
               

               Conread position:
               388-679
               

               Cow position:
               chr1:15347764-15347456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               395-753
               

               Cow position:
               chr1:23050668-23051043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 186
               

               Conread position:
               396-748
               

               Cow position:
               chr1:37419916-37419552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               397-712
               

               Cow position:
               chr1:11863406-11863081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               400-753
               

               Cow position:
               chr1:99910784-99911165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               25, 264
               

               Conread position:
               406-746
               

               Cow position:
               chr1:12062355-12061997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 21
               

               Conread position:
               424-753
               

               Cow position:
               chr1:48245669-48246020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               488-753
               

               Cow position:
               chr1:60339236-60339512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               503-710
               

               Cow position:
               chr1:58201721-58201508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               68, 27
               

               Conread position:
               517-751
               

               Cow position:
               chr1:28722835-28723077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               517-753
               

               Cow position:
               chr1:29362259-29362503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr1:40574178-40574422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr1:58884105-58883861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr1:73071094-73070850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr1:77117628-77117380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               518-753
               

               Cow position:
               chr1:82924214-82923973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               55, 97
               

               Conread position:
               519-753
               

               Cow position:
               chr1:89479286-89479512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               139, 83
               

               Conread position:
               520-752
               

               Cow position:
               chr1:88130736-88130976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               522-753
               

               Cow position:
               chr1:67901953-67901724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               181, 46
               

               Conread position:
               523-753
               

               Cow position:
               chr1:31396659-31396897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               530-709
               

               Cow position:
               chr1:20988928-20989110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               537-753
               

               Cow position:
               chr1:82652636-82652860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               542-744
               

               Cow position:
               chr1:15025885-15026088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               117, 14
               

               Conread position:
               542-752
               

               Cow position:
               chr1:55323067-55322852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               116, 148
               

               Conread position:
               544-753
               

               Cow position:
               chr1:94659680-94659888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               114, 31
               

               Conread position:
               546-753
               

               Cow position:
               chr1:85881995-85882209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               31, 139
               

               Conread position:
               576-753
               

               Cow position:
               chr1:82913120-82912937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               593-753
               

               Cow position:
               chr1:95239410-95239576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               610-752
               

               Cow position:
               chr1:5501991-5502139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               290-753
               

               Cow position:
               chr10:39179529-39180013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 374
               

               Conread position:
               295-525
               

               Cow position:
               chr10:10581424-10581655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               19, 205
               

               Conread position:
               295-653
               

               Cow position:
               chr10:29846859-29846485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-742
               

               Cow position:
               chr10:8289721-8290201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 203
               

               Conread position:
               295-742
               

               Cow position:
               chr10:19511358-19511825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 68
               

               Conread position:
               295-750
               

               Cow position:
               chr10:22100992-22101459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 193
               

               Conread position:
               295-753
               

               Cow position:
               chr10:1375287-1375761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 293
               

               Conread position:
               295-753
               

               Cow position:
               chr10:19143587-19143108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 269
               

               Conread position:
               295-753
               

               Cow position:
               chr10:21486667-21487145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 261
               

               Conread position:
               295-753
               

               Cow position:
               chr10:37769573-37770051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr10:38345612-38345132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr10:39041554-39041072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 163
               

               Conread position:
               297-753
               

               Cow position:
               chr10:3543824-3543358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               298-443
               

               Cow position:
               chr10:50018301-50018159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               124, 15
               

               Conread position:
               298-656
               

               Cow position:
               chr10:42747858-42748217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               7, 39
               

               Conread position:
               298-751
               

               Cow position:
               chr10:276350-276817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 15
               

               Conread position:
               298-751
               

               Cow position:
               chr10:29633104-29632635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 111
               

               Conread position:
               298-752
               

               Cow position:
               chr10:41351990-41351531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               320
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               298-753
               

               Cow position:
               chr10:62778099-62778577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 15
               

               Conread position:
               300-525
               

               Cow position:
               chr10:61297087-61297309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               120, 135
               

               Conread position:
               300-751
               

               Cow position:
               chr10:24299090-24298626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               300-751
               

               Cow position:
               chr10:38546466-38545997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 245
               

               Conread position:
               301-716
               

               Cow position:
               chr10:24978371-24977950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               122, 17
               

               Conread position:
               301-749
               

               Cow position:
               chr10:51952845-51952392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 117
               

               Conread position:
               301-751
               

               Cow position:
               chr10:4192456-4192005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 104
               

               Conread position:
               301-753
               

               Cow position:
               chr10:280863-280391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr10:11685902-11685441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               301-753
               

               Cow position:
               chr10:14803592-14804066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 322
               

               Conread position:
               301-753
               

               Cow position:
               chr10:21740992-21740522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 105
               

               Conread position:
               301-753
               

               Cow position:
               chr10:32578060-32578519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 201
               

               Conread position:
               301-753
               

               Cow position:
               chr10:41566865-41567333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 107
               

               Conread position:
               301-753
               

               Cow position:
               chr10:41876674-41877148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr10:47906537-47907008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 105
               

               Conread position:
               302-712
               

               Cow position:
               chr10:38847130-38847543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 118
               

               Conread position:
               303-753
               

               Cow position:
               chr10:34318499-34318065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 25
               

               Conread position:
               304-658
               

               Cow position:
               chr10:19839914-19840282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 41
               

               Conread position:
               304-753
               

               Cow position:
               chr10:10478379-10477911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 14
               

               Conread position:
               305-709
               

               Cow position:
               chr10:57559785-57559366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 25
               

               Conread position:
               305-715
               

               Cow position:
               chr10:54059584-54059168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 18
               

               Conread position:
               305-753
               

               Cow position:
               chr10:21901433-21900975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               299
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               22, 116
               

               Conread position:
               305-753
               

               Cow position:
               chr10:29696004-29696465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 19
               

               Conread position:
               306-575
               

               Cow position:
               chr10:37060692-37060968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               8, 100
               

               Conread position:
               306-620
               

               Cow position:
               chr10:57990202-57989875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 271
               

               Conread position:
               306-675
               

               Cow position:
               chr10:60489426-60489802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 114
               

               Conread position:
               306-753
               

               Cow position:
               chr10:7282921-7282457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 167
               

               Conread position:
               306-753
               

               Cow position:
               chr10:21400905-21400441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 18
               

               Conread position:
               306-753
               

               Cow position:
               chr10:41157218-41157677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 18
               

               Conread position:
               306-753
               

               Cow position:
               chr10:62216369-62216836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 225
               

               Conread position:
               308-753
               

               Cow position:
               chr10:124072-124540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               311-753
               

               Cow position:
               chr10:32650501-32650963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 8
               

               Conread position:
               313-707
               

               Cow position:
               chr10:4499479-4499861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               170, 21
               

               Conread position:
               313-751
               

               Cow position:
               chr10:14859747-14860194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 193
               

               Conread position:
               313-753
               

               Cow position:
               chr10:25498126-25498582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 19
               

               Conread position:
               313-753
               

               Cow position:
               chr10:25565476-25565028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 258
               

               Conread position:
               313-753
               

               Cow position:
               chr10:34685666-34686123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 9
               

               Conread position:
               313-753
               

               Cow position:
               chr10:39817580-39817133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 141
               

               Conread position:
               313-753
               

               Cow position:
               chr10:62409082-62408627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               314-574
               

               Cow position:
               chr10:42628439-42628704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               110, 74
               

               Conread position:
               324-753
               

               Cow position:
               chr10:31523620-31524028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               284
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               300, 86
               

               Conread position:
               346-751
               

               Cow position:
               chr10:13366050-13365642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 179
               

               Conread position:
               350-753
               

               Cow position:
               chr10:46191181-46191588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 65
               

               Conread position:
               351-753
               

               Cow position:
               chr10:19496469-19496056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 44
               

               Conread position:
               397-731
               

               Cow position:
               chr10:44294697-44295035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               400-753
               

               Cow position:
               chr10:15862278-15861907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 132
               

               Conread position:
               406-658
               

               Cow position:
               chr10:39904789-39905055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               16, 176
               

               Conread position:
               408-753
               

               Cow position:
               chr10:46694516-46694146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               263
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               22, 128
               

               Conread position:
               412-753
               

               Cow position:
               chr10:10415299-10415628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               8, 69
               

               Conread position:
               421-748
               

               Cow position:
               chr10:39854136-39853785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               425-670
               

               Cow position:
               chr10:22842663-22842916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 138
               

               Conread position:
               436-751
               

               Cow position:
               chr10:14951794-14952097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               96, 11
               

               Conread position:
               439-709
               

               Cow position:
               chr10:66176004-66175727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               95, 46
               

               Conread position:
               440-753
               

               Cow position:
               chr10:38404610-38404279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               62, 67
               

               Conread position:
               445-753
               

               Cow position:
               chr10:16925437-16925766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr10:2123276-2123032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr10:40152468-40152225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               60, 152
               

               Conread position:
               529-753
               

               Cow position:
               chr10:55093240-55093469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               537-716
               

               Cow position:
               chr10:39445133-39444951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               538-744
               

               Cow position:
               chr10:11820340-11820555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               29, 58
               

               Conread position:
               542-657
               

               Cow position:
               chr10:25454601-25454718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               542-750
               

               Cow position:
               chr10:58377577-58377367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               568-753
               

               Cow position:
               chr10:19758390-19758578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               570-753
               

               Cow position:
               chr10:28931984-28931795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               594-753
               

               Cow position:
               chr10:8328209-8328039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               289-749
               

               Cow position:
               chr11:3492395-3492875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               289-753
               

               Cow position:
               chr11:28230366-28229885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 326
               

               Conread position:
               290-570
               

               Cow position:
               chr11:7687301-7687596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               35, 139
               

               Conread position:
               294-753
               

               Cow position:
               chr11:44861136-44860661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 244
               

               Conread position:
               295-731
               

               Cow position:
               chr11:54209016-54209463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 108
               

               Conread position:
               295-753
               

               Cow position:
               chr11:8244111-8244572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 82
               

               Conread position:
               295-753
               

               Cow position:
               chr11:11987508-11987976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr11:12359033-12358557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 294
               

               Conread position:
               295-753
               

               Cow position:
               chr11:19103097-19102618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 140
               

               Conread position:
               295-753
               

               Cow position:
               chr11:23876693-23877170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 357
               

               Conread position:
               295-753
               

               Cow position:
               chr11:24392715-24393185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 96
               

               Conread position:
               295-753
               

               Cow position:
               chr11:26125539-26125063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 111
               

               Conread position:
               295-753
               

               Cow position:
               chr11:28055205-28054732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 126
               

               Conread position:
               295-753
               

               Cow position:
               chr11:38836028-38835553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 396
               

               Conread position:
               295-753
               

               Cow position:
               chr11:41171304-41170824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr11:42428728-42429201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               295-753
               

               Cow position:
               chr11:43515240-43514762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               295-753
               

               Cow position:
               chr11:58133760-58134238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 110
               

               Conread position:
               295-753
               

               Cow position:
               chr11:72110570-72110097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               297-473
               

               Cow position:
               chr11:31925591-31925769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               298-753
               

               Cow position:
               chr11:4028159-4027695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 388
               

               Conread position:
               299-753
               

               Cow position:
               chr11:67449884-67450366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               300-525
               

               Cow position:
               chr11:31414841-31414616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               300-701
               

               Cow position:
               chr11:9659999-9659586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 105
               

               Conread position:
               300-753
               

               Cow position:
               chr11:37492249-37491777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 86
               

               Conread position:
               300-753
               

               Cow position:
               chr11:44157841-44157369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 105
               

               Conread position:
               301-464
               

               Cow position:
               chr11:33195217-33195059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               18, 100
               

               Conread position:
               301-752
               

               Cow position:
               chr11:20921351-20920878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-752
               

               Cow position:
               chr11:36744782-36744313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 104
               

               Conread position:
               301-753
               

               Cow position:
               chr11:17108291-17107818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 185
               

               Conread position:
               301-753
               

               Cow position:
               chr11:19064855-19064381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr11:32450262-32450735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 408
               

               Conread position:
               301-753
               

               Cow position:
               chr11:57628652-57628178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr11:67847172-67846703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               301-753
               

               Cow position:
               chr11:71329040-71329512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               302-753
               

               Cow position:
               chr11:63660185-63659713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 339
               

               Conread position:
               303-707
               

               Cow position:
               chr11:65162138-65161745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               285
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 88
               

               Conread position:
               303-751
               

               Cow position:
               chr11:8262298-8261837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 117
               

               Conread position:
               304-746
               

               Cow position:
               chr11:29234249-29233795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 116
               

               Conread position:
               304-751
               

               Cow position:
               chr11:4041663-4041210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 102
               

               Conread position:
               305-752
               

               Cow position:
               chr11:53288055-53287588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               305-753
               

               Cow position:
               chr11:8887750-8887290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 176
               

               Conread position:
               305-753
               

               Cow position:
               chr11:10210563-10210094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 114
               

               Conread position:
               305-753
               

               Cow position:
               chr11:37477716-37477251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 100
               

               Conread position:
               306-512
               

               Cow position:
               chr11:7073072-7072864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               13, 27
               

               Conread position:
               306-709
               

               Cow position:
               chr11:77729126-77728707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               306-748
               

               Cow position:
               chr11:44496186-44495732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 122
               

               Conread position:
               306-751
               

               Cow position:
               chr11:29669229-29668762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               306-752
               

               Cow position:
               chr11:10846845-10847309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 19
               

               Conread position:
               306-753
               

               Cow position:
               chr11:34020309-34020758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 97
               

               Conread position:
               306-753
               

               Cow position:
               chr11:37093662-37093193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 177
               

               Conread position:
               306-753
               

               Cow position:
               chr11:85394409-85393943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 306
               

               Conread position:
               307-695
               

               Cow position:
               chr11:28050380-28049987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               263
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               194, 112
               

               Conread position:
               307-715
               

               Cow position:
               chr11:15998300-15998719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 131
               

               Conread position:
               307-753
               

               Cow position:
               chr11:25526983-25527426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 83
               

               Conread position:
               308-481
               

               Cow position:
               chr11:8896048-8896219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               108, 20
               

               Conread position:
               308-709
               

               Cow position:
               chr11:30125840-30125428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 15
               

               Conread position:
               308-751
               

               Cow position:
               chr11:21466478-21466943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               309-480
               

               Cow position:
               chr11:12093164-12093329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 103
               

               Conread position:
               309-525
               

               Cow position:
               chr11:11126323-11126535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               193, 87
               

               Conread position:
               309-707
               

               Cow position:
               chr11:50029289-50028883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               45, 23
               

               Conread position:
               310-753
               

               Cow position:
               chr11:28063094-28063544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               311-718
               

               Cow position:
               chr11:35228613-35228208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               312-753
               

               Cow position:
               chr11:1496660-1496206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 38
               

               Conread position:
               313-520
               

               Cow position:
               chr11:40777324-40777115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               313-616
               

               Cow position:
               chr11:9736544-9736227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               109, 145
               

               Conread position:
               313-720
               

               Cow position:
               chr11:76375061-76374690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               304, 92
               

               Conread position:
               313-751
               

               Cow position:
               chr11:17220804-17220349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 174
               

               Conread position:
               313-753
               

               Cow position:
               chr11:9158013-9157565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 92
               

               Conread position:
               313-753
               

               Cow position:
               chr11:12351655-12351197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 124
               

               Conread position:
               315-520
               

               Cow position:
               chr11:17280825-17280629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               315-752
               

               Cow position:
               chr11:52418801-52419255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 90
               

               Conread position:
               318-620
               

               Cow position:
               chr11:77235174-77235495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               324-706
               

               Cow position:
               chr11:44895598-44895204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               100, 223
               

               Conread position:
               324-753
               

               Cow position:
               chr11:15983049-15983492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 57
               

               Conread position:
               326-748
               

               Cow position:
               chr11:75919842-75920276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 88
               

               Conread position:
               345-753
               

               Cow position:
               chr11:7113041-7113462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 98
               

               Conread position:
               345-753
               

               Cow position:
               chr11:30304689-30305099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 74
               

               Conread position:
               348-753
               

               Cow position:
               chr11:4271424-4271003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 55
               

               Conread position:
               353-750
               

               Cow position:
               chr11:9607127-9606714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 206
               

               Conread position:
               372-753
               

               Cow position:
               chr11:61401570-61401183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               53, 33
               

               Conread position:
               395-726
               

               Cow position:
               chr11:14730030-14729686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 303
               

               Conread position:
               396-751
               

               Cow position:
               chr11:45110851-45111235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 235
               

               Conread position:
               412-751
               

               Cow position:
               chr11:81853113-81852766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               93, 10
               

               Conread position:
               413-753
               

               Cow position:
               chr11:8282586-8282944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 194
               

               Conread position:
               423-753
               

               Cow position:
               chr11:10049643-10049988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               442-753
               

               Cow position:
               chr11:10089873-10090203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 103
               

               Conread position:
               462-753
               

               Cow position:
               chr11:66726023-66726332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               58, 153
               

               Conread position:
               516-669
               

               Cow position:
               chr11:47761307-47761148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               517-753
               

               Cow position:
               chr11:32684913-32685152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               142, 49
               

               Conread position:
               517-753
               

               Cow position:
               chr11:37065499-37065253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               57, 78
               

               Conread position:
               517-753
               

               Cow position:
               chr11:64045622-64045866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               520-753
               

               Cow position:
               chr11:40776915-40776674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               523-753
               

               Cow position:
               chr11:5343587-5343349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               548-753
               

               Cow position:
               chr11:31414267-31414058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               110, 33
               

               Conread position:
               553-753
               

               Cow position:
               chr11:73476968-73477176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               556-746
               

               Cow position:
               chr11:7688276-7688470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               102, 25
               

               Conread position:
               568-708
               

               Cow position:
               chr11:24243136-24243275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               91, 58
               

               Conread position:
               572-703
               

               Cow position:
               chr11:59370669-59370536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               88, 30
               

               Conread position:
               592-753
               

               Cow position:
               chr11:52886796-52886636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               67, 113
               

               Conread position:
               596-753
               

               Cow position:
               chr11:8519697-8519859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               7, 150
               

               Conread position:
               607-750
               

               Cow position:
               chr11:17280578-17280429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr12:21197508-21197734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               9, 110
               

               Conread position:
               295-746
               

               Cow position:
               chr12:11097917-11098390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr12:8678443-8677967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 109
               

               Conread position:
               295-753
               

               Cow position:
               chr12:14662934-14662478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 139
               

               Conread position:
               295-753
               

               Cow position:
               chr12:22206069-22205592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 101
               

               Conread position:
               295-753
               

               Cow position:
               chr12:27933270-27932790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               297-753
               

               Cow position:
               chr12:1402172-1402647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 115
               

               Conread position:
               297-753
               

               Cow position:
               chr12:42860136-42859672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 183
               

               Conread position:
               298-753
               

               Cow position:
               chr12:2282228-2282701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               298-753
               

               Cow position:
               chr12:28766334-28765864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 7
               

               Conread position:
               299-752
               

               Cow position:
               chr12:22332302-22332778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 97
               

               Conread position:
               300-753
               

               Cow position:
               chr12:2480-2954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               300-753
               

               Cow position:
               chr12:8310864-8311336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 317
               

               Conread position:
               301-746
               

               Cow position:
               chr12:21254973-21254508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 312
               

               Conread position:
               301-746
               

               Cow position:
               chr12:26141495-26141962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr12:3360595-3361059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 76
               

               Conread position:
               301-753
               

               Cow position:
               chr12:21207379-21207849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 112
               

               Conread position:
               301-753
               

               Cow position:
               chr12:32653229-32653699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 113
               

               Conread position:
               301-753
               

               Cow position:
               chr12:37558241-37558711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 112
               

               Conread position:
               301-753
               

               Cow position:
               chr12:45261298-45261778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               303-587
               

               Cow position:
               chr12:48404733-48405027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               15, 116
               

               Conread position:
               303-753
               

               Cow position:
               chr12:10483734-10484186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               304
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               25, 10
               

               Conread position:
               305-707
               

               Cow position:
               chr12:1137284-1137691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               279
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               176, 27
               

               Conread position:
               305-753
               

               Cow position:
               chr12:21941466-21941920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 95
               

               Conread position:
               306-753
               

               Cow position:
               chr12:6406960-6406493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 237
               

               Conread position:
               307-753
               

               Cow position:
               chr12:25101370-25100906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 100
               

               Conread position:
               308-647
               

               Cow position:
               chr12:13949800-13949471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               76, 68
               

               Conread position:
               308-716
               

               Cow position:
               chr12:15951566-15951150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 92
               

               Conread position:
               308-751
               

               Cow position:
               chr12:20998431-20997979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 377
               

               Conread position:
               310-709
               

               Cow position:
               chr12:14693349-14693734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               44, 13
               

               Conread position:
               313-753
               

               Cow position:
               chr12:252362-251902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 175
               

               Conread position:
               313-753
               

               Cow position:
               chr12:21426391-21426849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 92
               

               Conread position:
               313-753
               

               Cow position:
               chr12:43031688-43031230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 391
               

               Conread position:
               314-753
               

               Cow position:
               chr12:21901641-21902092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 298
               

               Conread position:
               319-484
               

               Cow position:
               chr12:601350-601184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               343-707
               

               Cow position:
               chr12:8982690-8982318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               396-749
               

               Cow position:
               chr12:26947202-26946841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               557-752
               

               Cow position:
               chr12:2838903-2838700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               562-753
               

               Cow position:
               chr12:18501001-18501189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               98, 150
               

               Conread position:
               295-575
               

               Cow position:
               chr13:4481931-4482219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               207
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-639
               

               Cow position:
               chr13:32544403-32544754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               24, 30
               

               Conread position:
               295-753
               

               Cow position:
               chr13:1593700-1593221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 324
               

               Conread position:
               295-753
               

               Cow position:
               chr13:4940541-4941022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr13:6668669-6668189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr13:15924928-15924450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr13:32738364-32737888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 105
               

               Conread position:
               295-753
               

               Cow position:
               chr13:33336868-33336408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 186
               

               Conread position:
               295-753
               

               Cow position:
               chr13:34042910-34042435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 294
               

               Conread position:
               296-753
               

               Cow position:
               chr13:2389338-2388884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 101
               

               Conread position:
               297-753
               

               Cow position:
               chr13:3654848-3654392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 25
               

               Conread position:
               298-749
               

               Cow position:
               chr13:31734622-31734155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               298-751
               

               Cow position:
               chr13:34143197-34142726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 15
               

               Conread position:
               298-753
               

               Cow position:
               chr13:30657502-30657042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 121
               

               Conread position:
               299-753
               

               Cow position:
               chr13:17307940-17308409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 120
               

               Conread position:
               299-753
               

               Cow position:
               chr13:35756700-35757175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               300-499
               

               Cow position:
               chr13:13046359-13046162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               98, 121
               

               Conread position:
               300-753
               

               Cow position:
               chr13:2908983-2908516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 120
               

               Conread position:
               300-753
               

               Cow position:
               chr13:20542900-20542441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 45
               

               Conread position:
               300-753
               

               Cow position:
               chr13:31612877-31612400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               300-753
               

               Cow position:
               chr13:34326215-34325741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 100
               

               Conread position:
               300-753
               

               Cow position:
               chr13:34692624-34693097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 58
               

               Conread position:
               301-525
               

               Cow position:
               chr13:3058532-3058306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               301-716
               

               Cow position:
               chr13:33825266-33824838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 113
               

               Conread position:
               301-753
               

               Cow position:
               chr13:4872540-4873011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 105
               

               Conread position:
               301-753
               

               Cow position:
               chr13:30245273-30244799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 231
               

               Conread position:
               301-753
               

               Cow position:
               chr13:32986585-32986122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               301-753
               

               Cow position:
               chr13:54284055-54284504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 17
               

               Conread position:
               302-753
               

               Cow position:
               chr13:31832069-31832534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 105
               

               Conread position:
               303-701
               

               Cow position:
               chr13:48356790-48357183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 121
               

               Conread position:
               303-753
               

               Cow position:
               chr13:3276621-3277088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               303-753
               

               Cow position:
               chr13:34187226-34186751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               303-753
               

               Cow position:
               chr13:62328118-62327650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 242
               

               Conread position:
               304-474
               

               Cow position:
               chr13:34027737-34027908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               304-753
               

               Cow position:
               chr13:9043974-9044435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 151
               

               Conread position:
               305-715
               

               Cow position:
               chr13:2297330-2296906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 45
               

               Conread position:
               305-753
               

               Cow position:
               chr13:21840729-21840260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               306-702
               

               Cow position:
               chr13:30302538-30302943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 69
               

               Conread position:
               306-746
               

               Cow position:
               chr13:15521048-15520588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               306-751
               

               Cow position:
               chr13:34911898-34911446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 17
               

               Conread position:
               306-753
               

               Cow position:
               chr13:23410529-23410072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               306-753
               

               Cow position:
               chr13:50108932-50109396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 100
               

               Conread position:
               307-670
               

               Cow position:
               chr13:34868238-34868619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 12
               

               Conread position:
               307-747
               

               Cow position:
               chr13:30140462-30140923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               305
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               112, 25
               

               Conread position:
               311-658
               

               Cow position:
               chr13:2232132-2232493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 8
               

               Conread position:
               313-612
               

               Cow position:
               chr13:30237644-30237953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 198
               

               Conread position:
               313-753
               

               Cow position:
               chr13:34936613-34937081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 10
               

               Conread position:
               315-748
               

               Cow position:
               chr13:2305979-2306423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               296
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               104, 113
               

               Conread position:
               324-464
               

               Cow position:
               chr13:32606689-32606548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               324-702
               

               Cow position:
               chr13:33928074-33927691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 91
               

               Conread position:
               333-753
               

               Cow position:
               chr13:31560687-31561121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               138, 48
               

               Conread position:
               335-504
               

               Cow position:
               chr13:47859949-47860114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               345-753
               

               Cow position:
               chr13:13324263-13324683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 69
               

               Conread position:
               350-752
               

               Cow position:
               chr13:56730762-56730353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 26
               

               Conread position:
               378-716
               

               Cow position:
               chr13:10115081-10114760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               41, 58
               

               Conread position:
               383-753
               

               Cow position:
               chr13:49973226-49973618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               386-753
               

               Cow position:
               chr13:22186172-22185801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               119, 25
               

               Conread position:
               389-751
               

               Cow position:
               chr13:23003966-23003584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 305
               

               Conread position:
               404-752
               

               Cow position:
               chr13:15080633-15080284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               407-708
               

               Cow position:
               chr13:2583734-2583421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               17, 91
               

               Conread position:
               460-673
               

               Cow position:
               chr13:15451863-15451649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 78
               

               Conread position:
               519-753
               

               Cow position:
               chr13:3567475-3567728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               522-751
               

               Cow position:
               chr13:34767581-34767354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               135, 33
               

               Conread position:
               537-753
               

               Cow position:
               chr13:47230276-47230053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               590-753
               

               Cow position:
               chr13:4178886-4178717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               290-753
               

               Cow position:
               chr14:22018731-22019203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 136
               

               Conread position:
               293-748
               

               Cow position:
               chr14:43034546-43034082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               318
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               190, 39
               

               Conread position:
               294-753
               

               Cow position:
               chr14:36967589-36968065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 151
               

               Conread position:
               295-455
               

               Cow position:
               chr14:13778195-13778357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-736
               

               Cow position:
               chr14:45079868-45080313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 34
               

               Conread position:
               295-750
               

               Cow position:
               chr14:35928516-35928986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 18
               

               Conread position:
               295-753
               

               Cow position:
               chr14:5528398-5528872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 106
               

               Conread position:
               295-753
               

               Cow position:
               chr14:7471707-7472184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr14:11154822-11154355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 186
               

               Conread position:
               295-753
               

               Cow position:
               chr14:13302362-13302838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 140
               

               Conread position:
               295-753
               

               Cow position:
               chr14:16920351-16919880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 144
               

               Conread position:
               295-753
               

               Cow position:
               chr14:17001724-17001244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr14:19328935-19328458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 109
               

               Conread position:
               295-753
               

               Cow position:
               chr14:22032351-22031877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr14:28994524-28994044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-753
               

               Cow position:
               chr14:37223233-37223712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 314
               

               Conread position:
               295-753
               

               Cow position:
               chr14:41755205-41755654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 63
               

               Conread position:
               297-749
               

               Cow position:
               chr14:45712641-45712180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 205
               

               Conread position:
               297-753
               

               Cow position:
               chr14:44685382-44685853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 322
               

               Conread position:
               298-688
               

               Cow position:
               chr14:31607583-31607187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               267
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               201, 117
               

               Conread position:
               298-753
               

               Cow position:
               chr14:23690889-23690419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 183
               

               Conread position:
               298-753
               

               Cow position:
               chr14:33394438-33393966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 24
               

               Conread position:
               298-753
               

               Cow position:
               chr14:45767339-45767812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 245
               

               Conread position:
               299-477
               

               Cow position:
               chr14:45916736-45916913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               5, 40
               

               Conread position:
               299-682
               

               Cow position:
               chr14:40170337-40169951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               37, 43
               

               Conread position:
               300-464
               

               Cow position:
               chr14:41085470-41085313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               300-647
               

               Cow position:
               chr14:45160202-45160546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 110
               

               Conread position:
               300-716
               

               Cow position:
               chr14:44130262-44130684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               300-753
               

               Cow position:
               chr14:14309727-14309266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 160
               

               Conread position:
               300-753
               

               Cow position:
               chr14:17684733-17685206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 62
               

               Conread position:
               300-753
               

               Cow position:
               chr14:20781793-20782266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 364
               

               Conread position:
               300-753
               

               Cow position:
               chr14:44856088-44855617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 126
               

               Conread position:
               301-716
               

               Cow position:
               chr14:13660644-13660219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 21
               

               Conread position:
               301-749
               

               Cow position:
               chr14:45672708-45672239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 461
               

               Conread position:
               301-753
               

               Cow position:
               chr14:9044902-9045376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               301-753
               

               Cow position:
               chr14:30585599-30585141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 141
               

               Conread position:
               302-753
               

               Cow position:
               chr14:29048559-29048093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 110
               

               Conread position:
               303-749
               

               Cow position:
               chr14:44225754-44226203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 92
               

               Conread position:
               303-750
               

               Cow position:
               chr14:40339048-40339489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 104
               

               Conread position:
               303-753
               

               Cow position:
               chr14:7831199-7830730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 340
               

               Conread position:
               303-753
               

               Cow position:
               chr14:35387790-35387339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 10
               
303-753UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:45850566-45851032 (view  custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 104
               
305-728UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:16273954-16273510 (view  custom track)

               
               
               
Alignm length: 445

               
               
               
Alignm identity: 315

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 120, 0
305-753UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:13272605-13273057 (view  custom track)

               
               
               
Alignm length: 459

               
               
               
Alignm identity: 320

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 120, 17

               
               
               Conread position:305-753
               
               
               Cow position:chr14:23256703-23257169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 111

               
               
               Conread position:306-706
               
               
               Cow position:chr14:44376780-44377188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:306-709
               
               
               Cow position:chr14:11467941-11468348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:306-716
               
               
               Cow position:chr14:34924896-34925320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:306-750
               
               
               Cow position:chr14:30597026-30596576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:306-753
               
               
               Cow position:chr14:44421900-44422364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:306-753
               
               
               Cow position:chr14:50109922-50110376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 327

               
               
               Conread position:307-717
               
               
               Cow position:chr14:47589217-47589641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:307-748
               
               
               Cow position:chr14:38532953-38532487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 64

               
               
               Conread position:307-749
               
               
               Cow position:chr14:12608555-12608988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:308-706
               
               
               Cow position:chr14:44261748-44261334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 247

               
               
               Conread position:309-750
               
               
               Cow position:chr14:46083972-46084424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:311-753
               
               
               Cow position:chr14:47623917-47624370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 294

               
               
               Conread position:312-753
               
               
               Cow position:chr14:45205422-45205888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 95

               
               
               Conread position:313-749
               
               
               Cow position:chr14:749919-750376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr14:17492107-17491646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:314-753
               
               
               Cow position:chr14:48254961-48254505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:319-477
               
               
               Cow position:chr14:34774952-34775109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:327-753
               
               
               Cow position:chr14:45833528-45833964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:333-525
               
               
               Cow position:chr14:47921376-47921569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:338-753
               
               
               Cow position:chr14:42151699-42152133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:345-644
               
               
               Cow position:chr14:13622228-13621915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:347-753
               
               
               Cow position:chr14:45303976-45303554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 74

               
               
               Conread position:353-709
               
               
               Cow position:chr14:47654141-47654497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:372-753
               
               
               Cow position:chr14:45029704-45029313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 285

               
               
               Conread position:377-753
               
               
               Cow position:chr14:41407262-41407631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:383-753
               
               
               Cow position:chr14:23901381-23900990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:387-750
               
               
               Cow position:chr14:50134496-50134881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:388-753
               
               
               Cow position:chr14:2283764-2284149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 226

               
               
               Conread position:396-753
               
               
               Cow position:chr14:46464503-46464883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 241

               
               
               Conread position:400-753
               
               
               Cow position:chr14:48824053-48824393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:449-752
               
               
               Cow position:chr14:41085296-41084976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:517-750
               
               
               Cow position:chr14:13864517-13864275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr14:13480161-13479924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:517-753
               
               
               Cow position:chr14:45916983-45917228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:519-753
               
               
               Cow position:chr14:37414320-37414076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:537-746
               
               
               Cow position:chr14:19619812-19620023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:568-752
               
               
               Cow position:chr14:44551504-44551691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:572-753
               
               
               Cow position:chr14:5511446-5511632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:594-753
               
               
               Cow position:chr14:38146228-38146385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:602-753
               
               
               Cow position:chr14:42198245-42198399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:289-753
               
               
               Cow position:chr15:6472584-6472105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 351

               
               
               Conread position:292-750
               
               
               Cow position:chr15:35648883-35648427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 32

               
               
               Conread position:295-455
               
               
               Cow position:chr15:2923847-2924010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:295-685
               
               
               Cow position:chr15:316997-316613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 173

               
               
               Conread position:295-709
               
               
               Cow position:chr15:44828147-44828572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:295-715
               
               
               Cow position:chr15:10479358-10478927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:295-728
               
               
               Cow position:chr15:4921480-4921930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 108

               
               
               Conread position:295-751
               
               
               Cow position:chr15:12421831-12421356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr15:525520-525038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr15:2075989-2076459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-753
               
               
               Cow position:chr15:4384607-4385079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr15:4670756-4671240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:295-753
               
               
               Cow position:chr15:4764547-4765017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:295-753
               
               
               Cow position:chr15:6156628-6156142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:295-753
               
               
               Cow position:chr15:6554520-6554043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 172

               
               
               Conread position:295-753
               
               
               Cow position:chr15:8098818-8099298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:295-753
               
               
               Cow position:chr15:18333495-18333017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 395

               
               
               Conread position:295-753
               
               
               Cow position:chr15:19738719-19738242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:295-753
               
               
               Cow position:chr15:24294423-24294903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 343

               
               
               Conread position:295-753
               
               
               Cow position:chr15:38979250-38979731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr15:42490537-42491015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 324

               
               
               Conread position:295-753
               
               
               Cow position:chr15:51215926-51216400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:296-753
               
               
               Cow position:chr15:32722844-32722375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):206, 107

               
               
               Conread position:297-715
               
               
               Cow position:chr15:13428381-13428809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 22

               
               
               Conread position:297-752
               
               
               Cow position:chr15:28490809-28490330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:297-753
               
               
               Cow position:chr15:324283-324748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 98

               
               
               Conread position:297-753
               
               
               Cow position:chr15:17272034-17271585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:297-753
               
               
               Cow position:chr15:42936049-42936525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:298-568
               
               
               Cow position:chr15:50144842-50145121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 143

               
               
               Conread position:298-598
               
               
               Cow position:chr15:490817-490510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):204, 104

               
               
               Conread position:298-750
               
               
               Cow position:chr15:4960999-4961440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:298-751
               
               
               Cow position:chr15:4733202-4733668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr15:4630570-4630104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr15:6078070-6078552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:298-753
               
               
               Cow position:chr15:7894863-7894418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:298-753
               
               
               Cow position:chr15:21960849-21961319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:298-753
               
               
               Cow position:chr15:36641972-36642426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr15:41365519-41365991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 140

               
               
               Conread position:299-753
               
               
               Cow position:chr15:2006878-2007349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:299-753
               
               
               Cow position:chr15:36970260-36970736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:300-610
               
               
               Cow position:chr15:685503-685827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 283

               
               
               Conread position:300-630
               
               
               Cow position:chr15:327746-328095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:300-747
               
               
               Cow position:chr15:1763430-1763896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 151

               
               
               Conread position:300-749
               
               
               Cow position:chr15:6277917-6277452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 250

               
               
               Conread position:300-750
               
               
               Cow position:chr15:32692899-32693351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 121

               
               
               Conread position:300-751
               
               
               Cow position:chr15:4795020-4795486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:300-753
               
               
               Cow position:chr15:18576062-18576525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 350

               
               
               Conread position:301-524
               
               
               Cow position:chr15:35754485-35754264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:301-647
               
               
               Cow position:chr15:11598773-11598414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:301-715
               
               
               Cow position:chr15:22204775-22204343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-743
               
               
               Cow position:chr15:21878015-21877555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:301-752
               
               
               Cow position:chr15:50124595-50124128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 17

               
               
               Conread position:301-753
               
               
               Cow position:chr15:1771840-1772310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:302-753
               
               
               Cow position:chr15:1519803-1519338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:302-753
               
               
               Cow position:chr15:14583261-14582806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 96

               
               
               Conread position:303-591
               
               
               Cow position:chr15:6371500-6371206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:303-708
               
               
               Cow position:chr15:3843481-3843064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:303-753
               
               
               Cow position:chr15:4681563-4682044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:304-753
               
               
               Cow position:chr15:7927974-7928431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 98

               
               
               Conread position:305-594
               
               
               Cow position:chr15:44069135-44069440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:305-716
               
               
               Cow position:chr15:40104815-40105235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:305-717
               
               
               Cow position:chr15:7544223-7544653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-729
               
               
               Cow position:chr15:10887953-10888397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 299

               
               
               Conread position:305-753
               
               
               Cow position:chr15:1781599-1782066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:305-753
               
               
               Cow position:chr15:3038176-3037702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:305-753
               
               
               Cow position:chr15:20748759-20749227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr15:35734803-35735267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 102

               
               
               Conread position:306-584
               
               
               Cow position:chr15:10787746-10787460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:306-591
               
               
               Cow position:chr15:7933321-7933609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:306-746
               
               
               Cow position:chr15:8407911-8408360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:306-753
               
               
               Cow position:chr15:3262061-3261603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:306-753
               
               
               Cow position:chr15:4677842-4678289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:306-753
               
               
               Cow position:chr15:7259971-7260437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr15:15347777-15347308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr15:17039908-17039442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:306-753
               
               
               Cow position:chr15:32495042-32494574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr15:37391851-37392308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:307-691
               
               
               Cow position:chr15:45886150-45886535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:307-702
               
               
               Cow position:chr15:17219521-17219117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:307-749
               
               
               Cow position:chr15:2648312-2647848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:307-749
               
               
               Cow position:chr15:42321071-42320613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:307-750
               
               
               Cow position:chr15:24793401-24793856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:308-752
               
               
               Cow position:chr15:370311-369871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 226

               
               
               Conread position:308-753
               
               
               Cow position:chr15:7836588-7837055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:308-753
               
               
               Cow position:chr15:8000895-8000420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 20

               
               
               Conread position:308-753
               
               
               Cow position:chr15:8749779-8750238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 233

               
               
               Conread position:309-525
               
               
               Cow position:chr15:6594478-6594262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):5, 178

               
               
               Conread position:309-752
               
               
               Cow position:chr15:4649183-4649637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 310

               
               
               Conread position:310-709
               
               
               Cow position:chr15:1662732-1663130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):164, 77

               
               
               Conread position:310-753
               
               
               Cow position:chr15:23157479-23157019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 170

               
               
               Conread position:310-753
               
               
               Cow position:chr15:36648262-36648719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 104

               
               
               Conread position:311-706
               
               
               Cow position:chr15:49676378-49676772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:311-750
               
               
               Cow position:chr15:7233660-7234110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 321

               
               
               Conread position:311-750
               
               
               Cow position:chr15:53338389-53338832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:312-525
               
               
               Cow position:chr15:32709895-32710109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:312-753
               
               
               Cow position:chr15:4195813-4196275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:313-716
               
               
               Cow position:chr15:21816396-21815974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:313-750
               
               
               Cow position:chr15:2011436-2011891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:313-753
               
               
               Cow position:chr15:443960-444421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr15:17080834-17080390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:313-753
               
               
               Cow position:chr15:17291807-17292250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:313-753
               
               
               Cow position:chr15:18268636-18268175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr15:22920477-22920937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:313-753
               
               
               Cow position:chr15:35747647-35748105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 313

               
               
               Conread position:313-753
               
               
               Cow position:chr15:51800092-51800536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:314-678
               
               
               Cow position:chr15:55553-55934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:314-752
               
               
               Cow position:chr15:12614419-12614878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:314-753
               
               
               Cow position:chr15:32680193-32679745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 55

               
               
               Conread position:315-648
               
               
               Cow position:chr15:2593454-2593114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:316-750
               
               
               Cow position:chr15:690157-690598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 54

               
               
               Conread position:324-753
               
               
               Cow position:chr15:4170329-4169887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 100

               
               
               Conread position:333-749
               
               
               Cow position:chr15:15266283-15265854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:345-600
               
               
               Cow position:chr15:3903654-3903909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):144, 130

               
               
               Conread position:345-753
               
               
               Cow position:chr15:21666363-21665935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 272

               
               
               Conread position:346-748
               
               
               Cow position:chr15:7788979-7788564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):159, 243

               
               
               Conread position:350-753
               
               
               Cow position:chr15:7523116-7522681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 280

               
               
               Conread position:351-753
               
               
               Cow position:chr15:36627257-36626859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:372-610
               
               
               Cow position:chr15:13871175-13871428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:372-748
               
               
               Cow position:chr15:20357850-20357478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 55

               
               
               Conread position:378-750
               
               
               Cow position:chr15:4811739-4812129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:384-751
               
               
               Cow position:chr15:17787735-17787357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:386-753
               
               
               Cow position:chr15:29009267-29009651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 312

               
               
               Conread position:402-753
               
               
               Cow position:chr15:3010411-3010039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:413-706
               
               
               Cow position:chr15:51671807-51672108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:450-753
               
               
               Cow position:chr15:16542161-16542481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:469-752
               
               
               Cow position:chr15:25186423-25186138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:488-746
               
               
               Cow position:chr15:4143287-4143012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr15:1834892-1834649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:517-753
               
               
               Cow position:chr15:7922073-7921830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr15:25789400-25789157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:524-753
               
               
               Cow position:chr15:3888455-3888691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:530-753
               
               
               Cow position:chr15:1236907-1237130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:537-700
               
               
               Cow position:chr15:9428563-9428729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:538-753
               
               
               Cow position:chr15:24715819-24716036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:538-753
               
               
               Cow position:chr15:44069516-44069734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:565-751
               
               
               Cow position:chr15:10787512-10787319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:568-749
               
               
               Cow position:chr15:50146699-50146886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:581-750
               
               
               Cow position:chr15:6593309-6593136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:590-753
               
               
               Cow position:chr15:2924533-2924697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:289-749
               
               
               Cow position:chr16:5660840-5661310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 294

               
               
               Conread position:292-753
               
               
               Cow position:chr16:29046003-29046486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-497
               
               
               Cow position:chr16:7676708-7676507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:295-497
               
               
               Cow position:chr16:9777117-9777321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:295-616
               
               
               Cow position:chr16:24881701-24881369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:295-751
               
               
               Cow position:chr16:15491693-15492171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-751
               
               
               Cow position:chr16:23982297-23982773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 252

               
               
               Conread position:295-751
               
               
               Cow position:chr16:40887273-40886798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:295-753
               
               
               Cow position:chr16:408046-407567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr16:1568464-1567990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:295-753
               
               
               Cow position:chr16:2411984-2411505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 348

               
               
               Conread position:295-753
               
               
               Cow position:chr16:2484151-2483678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr16:8817119-8816640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:295-753
               
               
               Cow position:chr16:10204429-10203966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:295-753
               
               
               Cow position:chr16:10437243-10437707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:295-753
               
               
               Cow position:chr16:15565736-15566209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 187

               
               
               Conread position:295-753
               
               
               Cow position:chr16:23253517-23253043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:295-753
               
               
               Cow position:chr16:25340957-25341429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr16:27734819-27734338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr16:28472110-28471637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 357

               
               
               Conread position:295-753
               
               
               Cow position:chr16:31592920-31592440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr16:40297189-40296714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:295-753
               
               
               Cow position:chr16:43898283-43897804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:297-564
               
               
               Cow position:chr16:44965048-44965320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:297-751
               
               
               Cow position:chr16:12538936-12538462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 389

               
               
               Conread position:300-658
               
               
               Cow position:chr16:25152775-25153126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:300-750
               
               
               Cow position:chr16:25157225-25156763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 124

               
               
               Conread position:300-751
               
               
               Cow position:chr16:20255315-20254849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:300-753
               
               
               Cow position:chr16:6549529-6549060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:300-753
               
               
               Cow position:chr16:9929547-9930004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:316
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:300-753
               
               
               Cow position:chr16:19713856-19713425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 103

               
               
               Conread position:300-753
               
               
               Cow position:chr16:26662742-26663213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:301-472
               
               
               Cow position:chr16:14422707-14422881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:301-583
               
               
               Cow position:chr16:16687862-16688146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 202

               
               
               Conread position:301-697
               
               
               Cow position:chr16:32605819-32606233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-709
               
               
               Cow position:chr16:6942614-6943040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-716
               
               
               Cow position:chr16:4303478-4303054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:301-753
               
               
               Cow position:chr16:5918477-5918947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 323

               
               
               Conread position:303-750
               
               
               Cow position:chr16:49257571-49257122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:305-630
               
               
               Cow position:chr16:9457524-9457841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:305-684
               
               
               Cow position:chr16:18688128-18687734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:305-693
               
               
               Cow position:chr16:1430224-1430623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 182

               
               
               Conread position:305-750
               
               
               Cow position:chr16:42740425-42739962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:305-753
               
               
               Cow position:chr16:28171362-28170899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 162

               
               
               Conread position:306-493
               
               
               Cow position:chr16:29031913-29032100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 164

               
               
               Conread position:306-527
               
               
               Cow position:chr16:2728316-2728095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:306-658
               
               
               Cow position:chr16:29676308-29675947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 317

               
               
               Conread position:306-751
               
               
               Cow position:chr16:15183803-15184265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:306-753
               
               
               Cow position:chr16:2239733-2239268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:306-753
               
               
               Cow position:chr16:7905640-7906083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:306-753
               
               
               Cow position:chr16:25084618-25085085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr16:49236116-49235687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:307-685
               
               
               Cow position:chr16:47562693-47563073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:307-753
               
               
               Cow position:chr16:25440619-25441082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:307-753
               
               
               Cow position:chr16:25458470-25458007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:308-724
               
               
               Cow position:chr16:5888488-5888898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:310-753
               
               
               Cow position:chr16:41559678-41560122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:313-499
               
               
               Cow position:chr16:32935146-32935327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:313-524
               
               
               Cow position:chr16:10376266-10376057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:313-695
               
               
               Cow position:chr16:54647332-54647719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:313-716
               
               
               Cow position:chr16:11052177-11052585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:313-753
               
               
               Cow position:chr16:31757-32202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 10

               
               
               Conread position:313-753
               
               
               Cow position:chr16:36232600-36232151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 104

               
               
               Conread position:315-753
               
               
               Cow position:chr16:36282405-36282861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 234

               
               
               Conread position:324-753
               
               
               Cow position:chr16:11111918-11111478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:338-753
               
               
               Cow position:chr16:36362318-36361899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 85

               
               
               Conread position:340-753
               
               
               Cow position:chr16:25187673-25188106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 411

               
               
               Conread position:342-707
               
               
               Cow position:chr16:16276471-16276092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 212

               
               
               Conread position:347-753
               
               
               Cow position:chr16:51685482-51685901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 57

               
               
               Conread position:350-750
               
               
               Cow position:chr16:56551170-56551581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 241

               
               
               Conread position:350-753
               
               
               Cow position:chr16:10808208-10808614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:364-753
               
               
               Cow position:chr16:39820694-39821094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 50

               
               
               Conread position:365-525
               
               
               Cow position:chr16:56320894-56321055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:375-753
               
               
               Cow position:chr16:836097-836493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:396-751
               
               
               Cow position:chr16:34529413-34529783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 185

               
               
               Conread position:402-753
               
               
               Cow position:chr16:335395-335755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:405-753
               
               
               Cow position:chr16:5483418-5483787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:413-753
               
               
               Cow position:chr16:42051267-42050923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:424-753
               
               
               Cow position:chr16:14666714-14666365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:517-709
               
               
               Cow position:chr16:32935380-32935575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:517-718
               
               
               Cow position:chr16:2728080-2727875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:558-753
               
               
               Cow position:chr16:44966436-44966632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:596-753
               
               
               Cow position:chr16:53045654-53045818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:289-753
               
               
               Cow position:chr17:15143814-15143325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:295-525
               
               
               Cow position:chr17:2579123-2579352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:295-751
               
               
               Cow position:chr17:19269802-19269326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:295-753
               
               
               Cow position:chr17:4081217-4081674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 23

               
               
               Conread position:295-753
               
               
               Cow position:chr17:11088158-11087682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 108

               
               
               Conread position:295-753
               
               
               Cow position:chr17:13857211-13856727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr17:25737226-25737705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:297-751
               
               
               Cow position:chr17:18104115-18103640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 340

               
               
               Conread position:299-753
               
               
               Cow position:chr17:2587903-2588348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:300-455
               
               
               Cow position:chr17:32024627-32024472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 102

               
               
               Conread position:300-738
               
               
               Cow position:chr17:20401250-20401700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:300-753
               
               
               Cow position:chr17:14325925-14325465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 95

               
               
               Conread position:300-753
               
               
               Cow position:chr17:15370648-15371092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:300-753
               
               
               Cow position:chr17:16859988-16859519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 437

               
               
               Conread position:300-753
               
               
               Cow position:chr17:16889695-16890166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:300-753
               
               
               Cow position:chr17:23857468-23856992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:301-594
               
               
               Cow position:chr17:11782939-11783234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-715
               
               
               Cow position:chr17:22160484-22160916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr17:1383243-1382772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr17:2249013-2248542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 269

               
               
               Conread position:301-753
               
               
               Cow position:chr17:6089593-6089119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr17:8208679-8209148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:301-753
               
               
               Cow position:chr17:9653881-9653414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr17:14217456-14216981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr17:15435361-15435833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:301-753
               
               
               Cow position:chr17:15849968-15850438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:301-753
               
               
               Cow position:chr17:20666158-20665684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr17:24633525-24633996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:301-753
               
               
               Cow position:chr17:24780616-24781090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-753
               
               
               Cow position:chr17:27345378-27345841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:302-753
               
               
               Cow position:chr17:39933262-39933697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 39

               
               
               Conread position:305-753
               
               
               Cow position:chr17:1879665-1880136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 124

               
               
               Conread position:306-534
               
               
               Cow position:chr17:2737952-2738179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 217

               
               
               Conread position:306-753
               
               
               Cow position:chr17:2286950-2287428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 134

               
               
               Conread position:306-753
               
               
               Cow position:chr17:22429908-22429452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:307-608
               
               
               Cow position:chr17:28109663-28109974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:307-753
               
               
               Cow position:chr17:14893738-14894195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:308-594
               
               
               Cow position:chr17:40803971-40804270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 282

               
               
               Conread position:308-751
               
               
               Cow position:chr17:14308728-14308273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:308-753
               
               
               Cow position:chr17:42264102-42264546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:297
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:309-694
               
               
               Cow position:chr17:15322407-15322788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:309-748
               
               
               Cow position:chr17:228725-228271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 222

               
               
               Conread position:309-752
               
               
               Cow position:chr17:13929244-13929709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:309-753
               
               
               Cow position:chr17:2146787-2147212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:310-708
               
               
               Cow position:chr17:18849290-18849691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:310-753
               
               
               Cow position:chr17:2173455-2173920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:310-753
               
               
               Cow position:chr17:3643258-3642794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:311-661
               
               
               Cow position:chr17:1284179-1283844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:312-716
               
               
               Cow position:chr17:152884-152480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 51

               
               
               Conread position:313-749
               
               
               Cow position:chr17:2261691-2262144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 328

               
               
               Conread position:313-749
               
               
               Cow position:chr17:15157378-15156926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 106

               
               
               Conread position:314-753
               
               
               Cow position:chr17:44853346-44852890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):139, 74

               
               
               Conread position:315-753
               
               
               Cow position:chr17:4294961-4295387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 80

               
               
               Conread position:318-753
               
               
               Cow position:chr17:20183640-20183189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:324-753
               
               
               Cow position:chr17:35591807-35592255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 223

               
               
               Conread position:332-749
               
               
               Cow position:chr17:23324841-23324416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 150

               
               
               Conread position:345-753
               
               
               Cow position:chr17:1946589-1947012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 360

               
               
               Conread position:347-753
               
               
               Cow position:chr17:18185909-18185490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:396-753
               
               
               Cow position:chr17:22131898-22132270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 149

               
               
               Conread position:397-753
               
               
               Cow position:chr17:6259510-6259887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:406-753
               
               
               Cow position:chr17:20088056-20087702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 241

               
               
               Conread position:517-753
               
               
               Cow position:chr17:2555921-2556164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr17:18026959-18026715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:544-751
               
               
               Cow position:chr17:2579457-2579665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:568-753
               
               
               Cow position:chr17:31199792-31199608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:590-753
               
               
               Cow position:chr17:40804689-40804858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:294-753
               
               
               Cow position:chr18:27838534-27838066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 332

               
               
               Conread position:295-525
               
               
               Cow position:chr18:32651766-32651997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:295-620
               
               
               Cow position:chr18:27986799-27987138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:295-753
               
               
               Cow position:chr18:14415749-14416226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr18:23797421-23797897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:295-753
               
               
               Cow position:chr18:28974128-28973653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:295-753
               
               
               Cow position:chr18:37504836-37505314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 108

               
               
               Conread position:295-753
               
               
               Cow position:chr18:40478153-40478633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 298

               
               
               Conread position:295-753
               
               
               Cow position:chr18:51689398-51689874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 119

               
               
               Conread position:297-658
               
               
               Cow position:chr18:44621532-44621908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:297-750
               
               
               Cow position:chr18:16877258-16877717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:297-753
               
               
               Cow position:chr18:6869482-6869009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 102

               
               
               Conread position:297-753
               
               
               Cow position:chr18:36508106-36508582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 340

               
               
               Conread position:298-753
               
               
               Cow position:chr18:33268615-33269075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:298-753
               
               
               Cow position:chr18:35335264-35335729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:298-753
               
               
               Cow position:chr18:43147149-43146676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:300-525
               
               
               Cow position:chr18:25349812-25350041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:300-670
               
               
               Cow position:chr18:17992785-17992402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 89

               
               
               Conread position:300-716
               
               
               Cow position:chr18:16660228-16659809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 184

               
               
               Conread position:300-753
               
               
               Cow position:chr18:19352163-19352635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:300-753
               
               
               Cow position:chr18:33358644-33359115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:300-753
               
               
               Cow position:chr18:39748358-39748828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 120

               
               
               Conread position:300-753
               
               
               Cow position:chr18:48221654-48222129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:301-753
               
               
               Cow position:chr18:16078479-16078967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:301-753
               
               
               Cow position:chr18:22602263-22602737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr18:33953791-33953319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:301-753
               
               
               Cow position:chr18:47741794-47742268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:303-418
               
               
               Cow position:chr18:14130071-14130188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:303-741
               
               
               Cow position:chr18:32293554-32294005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 375

               
               
               Conread position:305-753
               
               
               Cow position:chr18:23944591-23944125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 239

               
               
               Conread position:305-753
               
               
               Cow position:chr18:41841044-41840575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr18:55089144-55088675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:306-712
               
               
               Cow position:chr18:1520911-1521333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 260

               
               
               Conread position:306-750
               
               
               Cow position:chr18:33335653-33336109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 101

               
               
               Conread position:306-750
               
               
               Cow position:chr18:54172062-54171613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 320

               
               
               Conread position:306-753
               
               
               Cow position:chr18:16176825-16176364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:306-753
               
               
               Cow position:chr18:51480621-51481089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:306-753
               
               
               Cow position:chr18:54024574-54024110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:307-751
               
               
               Cow position:chr18:16533766-16534226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:308-753
               
               
               Cow position:chr18:47719781-47719334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 111

               
               
               Conread position:313-520
               
               
               Cow position:chr18:19540086-19539878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 96

               
               
               Conread position:313-572
               
               
               Cow position:chr18:51660206-51660478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr18:2019889-2019435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:313-753
               
               
               Cow position:chr18:11275306-11274856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:313-753
               
               
               Cow position:chr18:43200855-43201304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:313-753
               
               
               Cow position:chr18:51257772-51258233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 228

               
               
               Conread position:313-753
               
               
               Cow position:chr18:51310372-51310835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 134

               
               
               Conread position:328-517
               
               
               Cow position:chr18:54269274-54269460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:328-753
               
               
               Cow position:chr18:53785644-53786089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:353-750
               
               
               Cow position:chr18:29236647-29237055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:367-683
               
               
               Cow position:chr18:35288373-35288714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:383-753
               
               
               Cow position:chr18:2887164-2886772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:396-702
               
               
               Cow position:chr18:54044829-54044513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:399-749
               
               
               Cow position:chr18:51341561-51341932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr18:114401-114639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:520-753
               
               
               Cow position:chr18:25350673-25350915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:523-753
               
               
               Cow position:chr18:24040721-24040483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:527-753
               
               
               Cow position:chr18:51463059-51462828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:537-753
               
               
               Cow position:chr18:19539554-19539330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:542-753
               
               
               Cow position:chr18:32652251-32652469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:586-753
               
               
               Cow position:chr18:18089396-18089223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:295-716
               
               
               Cow position:chr19:55078520-55078959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-752
               
               
               Cow position:chr19:171985-172464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr19:203737-204215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:295-753
               
               
               Cow position:chr19:7488087-7488567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 190

               
               
               Conread position:295-753
               
               
               Cow position:chr19:10672532-10672052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr19:33941386-33941863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 453

               
               
               Conread position:295-753
               
               
               Cow position:chr19:40852656-40852184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 234

               
               
               Conread position:297-712
               
               
               Cow position:chr19:42299719-42299288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:297-753
               
               
               Cow position:chr19:416430-416915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 250

               
               
               Conread position:297-753
               
               
               Cow position:chr19:772376-772853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:297-753
               
               
               Cow position:chr19:32223654-32223195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 108

               
               
               Conread position:298-658
               
               
               Cow position:chr19:29209343-29209712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:298-753
               
               
               Cow position:chr19:4385261-4385734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:298-753
               
               
               Cow position:chr19:30754954-30755434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:299-477
               
               
               Cow position:chr19:32238086-32237899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:299-716
               
               
               Cow position:chr19:378093-377689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 51

               
               
               Conread position:299-753
               
               
               Cow position:chr19:39390298-39390762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:300-577
               
               
               Cow position:chr19:4252577-4252289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:300-634
               
               
               Cow position:chr19:4532960-4532625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 13

               
               
               Conread position:300-753
               
               
               Cow position:chr19:32665313-32665779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 142

               
               
               Conread position:301-637
               
               
               Cow position:chr19:32193356-32193711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr19:76454-76015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 63

               
               
               Conread position:301-753
               
               
               Cow position:chr19:31341499-31341976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:301-753
               
               
               Cow position:chr19:32244460-32244938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:303-608
               
               
               Cow position:chr19:561713-561418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:305-753
               
               
               Cow position:chr19:170955-170493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 287

               
               
               Conread position:305-753
               
               
               Cow position:chr19:7341858-7342322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:305-753
               
               
               Cow position:chr19:28593065-28593531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:305-753
               
               
               Cow position:chr19:43143502-43143970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:306-524
               
               
               Cow position:chr19:35376340-35376563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:306-675
               
               
               Cow position:chr19:548181-548536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:306-716
               
               
               Cow position:chr19:30372068-30372487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:306-750
               
               
               Cow position:chr19:39688330-39688779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:306-753
               
               
               Cow position:chr19:893817-893361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:307-716
               
               
               Cow position:chr19:34211-34629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:307-742
               
               
               Cow position:chr19:35979055-35979508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:307-753
               
               
               Cow position:chr19:1031897-1032329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 25

               
               
               Conread position:308-712
               
               
               Cow position:chr19:20125412-20125812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:308-753
               
               
               Cow position:chr19:28581864-28581405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:309-752
               
               
               Cow position:chr19:40887858-40887403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:313-519
               
               
               Cow position:chr19:52152463-52152261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:313-642
               
               
               Cow position:chr19:26984153-26983834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:313-753
               
               
               Cow position:chr19:37693-38149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 88

               
               
               Conread position:314-750
               
               
               Cow position:chr19:261232-261694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:324-753
               
               
               Cow position:chr19:39546432-39546877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 95

               
               
               Conread position:331-721
               
               
               Cow position:chr19:15953673-15954070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:340-651
               
               
               Cow position:chr19:27052943-27052623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 68

               
               
               Conread position:350-747
               
               
               Cow position:chr19:359672-359260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:357-716
               
               
               Cow position:chr19:543790-543413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:359-610
               
               
               Cow position:chr19:28376370-28376627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):63, 179

               
               
               Conread position:364-716
               
               
               Cow position:chr19:10517258-10516898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:376-753
               
               
               Cow position:chr19:42248671-42249058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:397-753
               
               
               Cow position:chr19:33873304-33873680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:400-712
               
               
               Cow position:chr19:7450119-7449815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):129, 9

               
               
               Conread position:423-753
               
               
               Cow position:chr19:6553517-6553856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 152

               
               
               Conread position:463-716
               
               
               Cow position:chr19:32237736-32237469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:515-753
               
               
               Cow position:chr19:20104721-20104967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:523-753
               
               
               Cow position:chr19:687082-687318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:524-753
               
               
               Cow position:chr19:52151814-52151576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:568-744
               
               
               Cow position:chr19:35376850-35377032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:581-753
               
               
               Cow position:chr19:352917-352739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:290-653
               
               
               Cow position:chr2:12224937-12224556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:290-753
               
               
               Cow position:chr2:54649585-54649126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 152

               
               
               Conread position:293-702
               
               
               Cow position:chr2:2357240-2356833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:294-753
               
               
               Cow position:chr2:72109302-72108834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 193

               
               
               Conread position:295-525
               
               
               Cow position:chr2:24921563-24921794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-709
               
               
               Cow position:chr2:72682911-72682484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:295-710
               
               
               Cow position:chr2:976054-975628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:295-746
               
               
               Cow position:chr2:6959962-6960434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:295-746
               
               
               Cow position:chr2:45214039-45213600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 253

               
               
               Conread position:295-750
               
               
               Cow position:chr2:50984011-50983535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-752
               
               
               Cow position:chr2:19009451-19009927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:295-753
               
               
               Cow position:chr2:10269440-10268964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:295-753
               
               
               Cow position:chr2:11159910-11159431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 414

               
               
               Conread position:295-753
               
               
               Cow position:chr2:13046461-13046009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:295-753
               
               
               Cow position:chr2:16899462-16899945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr2:24145495-24145966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:295-753
               
               
               Cow position:chr2:28651008-28650535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr2:42672167-42671692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:295-753
               
               
               Cow position:chr2:50076821-50077291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 290

               
               
               Conread position:295-753
               
               
               Cow position:chr2:65939230-65938754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 340

               
               
               Conread position:297-616
               
               
               Cow position:chr2:25888984-25888652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 108

               
               
               Conread position:297-753
               
               
               Cow position:chr2:53328971-53329442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 108

               
               
               Conread position:298-450
               
               
               Cow position:chr2:2363377-2363527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):126, 15

               
               
               Conread position:298-624
               
               
               Cow position:chr2:1491199-1490867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:298-731
               
               
               Cow position:chr2:32458787-32458335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 407

               
               
               Conread position:298-753
               
               
               Cow position:chr2:176310-175832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:298-753
               
               
               Cow position:chr2:16077076-16076599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:300-750
               
               
               Cow position:chr2:16288478-16288918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:300-751
               
               
               Cow position:chr2:6772939-6772477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 57

               
               
               Conread position:300-752
               
               
               Cow position:chr2:44992057-44991586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 50

               
               
               Conread position:300-752
               
               
               Cow position:chr2:82166840-82167304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:300-752
               
               
               Cow position:chr2:85356544-85356076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 116

               
               
               Conread position:300-753
               
               
               Cow position:chr2:422288-422762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 370

               
               
               Conread position:300-753
               
               
               Cow position:chr2:5871106-5870658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:300-753
               
               
               Cow position:chr2:10844113-10843654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 140

               
               
               Conread position:300-753
               
               
               Cow position:chr2:39420817-39421274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:300-753
               
               
               Cow position:chr2:52061890-52062363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:300-753
               
               
               Cow position:chr2:52152629-52152167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 277

               
               
               Conread position:300-753
               
               
               Cow position:chr2:52655696-52656162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 119

               
               
               Conread position:300-753
               
               
               Cow position:chr2:81256028-81256501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 413

               
               
               Conread position:301-525
               
               
               Cow position:chr2:27816999-27817225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-631
               
               
               Cow position:chr2:5519767-5519419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-749
               
               
               Cow position:chr2:3325344-3324872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-752
               
               
               Cow position:chr2:57334427-57334892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:301-753
               
               
               Cow position:chr2:213001-212523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:301-753
               
               
               Cow position:chr2:2185034-2184560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr2:11969534-11969073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:301-753
               
               
               Cow position:chr2:41656311-41656779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:301-753
               
               
               Cow position:chr2:41685736-41686212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr2:51991307-51990834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:301-753
               
               
               Cow position:chr2:52615694-52616169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr2:57142464-57141990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-753
               
               
               Cow position:chr2:5481411-5480973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:303-710
               
               
               Cow position:chr2:61775456-61775865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 16

               
               
               Conread position:303-715
               
               
               Cow position:chr2:6877719-6878132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 176

               
               
               Conread position:303-753
               
               
               Cow position:chr2:14560422-14560882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 223

               
               
               Conread position:303-753
               
               
               Cow position:chr2:22077015-22077487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:304-498
               
               
               Cow position:chr2:54736850-54737045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:305-631
               
               
               Cow position:chr2:67421614-67421276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):173, 107

               
               
               Conread position:305-710
               
               
               Cow position:chr2:20028021-20028437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:305-749
               
               
               Cow position:chr2:49471474-49471939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr2:35352610-35353063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:305-753
               
               
               Cow position:chr2:78741363-78741826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:306-668
               
               
               Cow position:chr2:41149281-41149650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:306-673
               
               
               Cow position:chr2:782501-782140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:306-702
               
               
               Cow position:chr2:10733601-10733200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:306-708
               
               
               Cow position:chr2:3729963-3730374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 393

               
               
               Conread position:306-752
               
               
               Cow position:chr2:26865311-26864860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:306-752
               
               
               Cow position:chr2:26920924-26921391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 319

               
               
               Conread position:306-753
               
               
               Cow position:chr2:283465-282996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr2:32654580-32655031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 77

               
               
               Conread position:306-753
               
               
               Cow position:chr2:42334039-42333592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 200

               
               
               Conread position:306-753
               
               
               Cow position:chr2:44345943-44346412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr2:49603959-49604412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:306-753
               
               
               Cow position:chr2:56438491-56438035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:307-702
               
               
               Cow position:chr2:38589414-38589797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):191, 97

               
               
               Conread position:307-716
               
               
               Cow position:chr2:52174083-52173671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:307-722
               
               
               Cow position:chr2:20921550-20921126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:307-753
               
               
               Cow position:chr2:2380357-2380807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:307-753
               
               
               Cow position:chr2:47810243-47810707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:308-563
               
               
               Cow position:chr2:51305674-51305424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:308-750
               
               
               Cow position:chr2:44935844-44935394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:308-753
               
               
               Cow position:chr2:202421-201969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 308

               
               
               Conread position:308-753
               
               
               Cow position:chr2:5905617-5905165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 239

               
               
               Conread position:309-503
               
               
               Cow position:chr2:75250995-75251183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:309-608
               
               
               Cow position:chr2:47604563-47604263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:309-750
               
               
               Cow position:chr2:1673416-1672974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:309-753
               
               
               Cow position:chr2:80956411-80955940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 131

               
               
               Conread position:310-753
               
               
               Cow position:chr2:2413565-2413100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:312-753
               
               
               Cow position:chr2:47039174-47038716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 90

               
               
               Conread position:313-525
               
               
               Cow position:chr2:8117488-8117699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):112, 189

               
               
               Conread position:313-750
               
               
               Cow position:chr2:28621587-28621134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:313-753
               
               
               Cow position:chr2:9907149-9907609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:313-753
               
               
               Cow position:chr2:10186986-10186537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 82

               
               
               Conread position:313-753
               
               
               Cow position:chr2:25031239-25030780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:313-753
               
               
               Cow position:chr2:44090535-44090996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr2:63293337-63292870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr2:72922593-72922135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:313-753
               
               
               Cow position:chr2:78761723-78762169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 41

               
               
               Conread position:314-753
               
               
               Cow position:chr2:46945909-46946364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 106

               
               
               Conread position:317-753
               
               
               Cow position:chr2:10712189-10711740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:323-701
               
               
               Cow position:chr2:47851869-47851490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:324-709
               
               
               Cow position:chr2:50321547-50321926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):337, 18

               
               
               Conread position:331-709
               
               
               Cow position:chr2:67014911-67014524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:332-753
               
               
               Cow position:chr2:4405093-4404651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:333-709
               
               
               Cow position:chr2:769133-768748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:333-753
               
               
               Cow position:chr2:59414424-59413984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 263

               
               
               Conread position:338-748
               
               
               Cow position:chr2:34565665-34565238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:340-716
               
               
               Cow position:chr2:26868538-26868923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:341-657
               
               
               Cow position:chr2:20844664-20844984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 5

               
               
               Conread position:343-753
               
               
               Cow position:chr2:41171955-41172374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:347-753
               
               
               Cow position:chr2:43958895-43959302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:351-716
               
               
               Cow position:chr2:7901557-7901938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:353-751
               
               
               Cow position:chr2:4235452-4235856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 259

               
               
               Conread position:355-750
               
               
               Cow position:chr2:7210983-7211393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 68

               
               
               Conread position:365-753
               
               
               Cow position:chr2:44106794-44106413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:366-752
               
               
               Cow position:chr2:2102176-2101775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:373-709
               
               
               Cow position:chr2:10294429-10294775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:377-753
               
               
               Cow position:chr2:61130986-61130629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:378-750
               
               
               Cow position:chr2:5814108-5813704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:381-656
               
               
               Cow position:chr2:40245363-40245649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:393-751
               
               
               Cow position:chr2:28643803-28643437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:396-753
               
               
               Cow position:chr2:10730236-10729861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:396-753
               
               
               Cow position:chr2:28792565-28792947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 245

               
               
               Conread position:396-753
               
               
               Cow position:chr2:36979699-36980071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:404-753
               
               
               Cow position:chr2:28746801-28747157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:406-716
               
               
               Cow position:chr2:53473827-53473502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:469-750
               
               
               Cow position:chr2:36054243-36053959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:516-656
               
               
               Cow position:chr2:3837743-3837885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:517-750
               
               
               Cow position:chr2:39621746-39621982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:517-753
               
               
               Cow position:chr2:14821962-14822197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:519-751
               
               
               Cow position:chr2:2363652-2363878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:557-746
               
               
               Cow position:chr2:8118055-8118252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:559-751
               
               
               Cow position:chr2:36031241-36031040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:562-753
               
               
               Cow position:chr2:10612130-10611930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:568-753
               
               
               Cow position:chr2:51305229-51305034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:295-688
               
               
               Cow position:chr20:21393304-21393706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:295-751
               
               
               Cow position:chr20:7116739-7116260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr20:3270454-3270915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:295-753
               
               
               Cow position:chr20:5534673-5535148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr20:12439030-12438550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr20:13762637-13763115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr20:21914057-21914539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr20:25851259-25850780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 270

               
               
               Conread position:295-753
               
               
               Cow position:chr20:27868928-27869408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr20:28565869-28565385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:297-752
               
               
               Cow position:chr20:28160515-28160980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 115

               
               
               Conread position:297-753
               
               
               Cow position:chr20:23469926-23469455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 437

               
               
               Conread position:298-645
               
               
               Cow position:chr20:4799910-4799554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 117

               
               
               Conread position:298-751
               
               
               Cow position:chr20:5483927-5484398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:299-753
               
               
               Cow position:chr20:15098133-15097666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 25

               
               
               Conread position:299-753
               
               
               Cow position:chr20:24614286-24614745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 120

               
               
               Conread position:299-753
               
               
               Cow position:chr20:35119310-35119781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 182

               
               
               Conread position:300-753
               
               
               Cow position:chr20:23798617-23799097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:301-573
               
               
               Cow position:chr20:19192391-19192105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr20:5560978-5560504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:303-605
               
               
               Cow position:chr20:28593485-28593795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:303-656
               
               
               Cow position:chr20:22717949-22717586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:305-716
               
               
               Cow position:chr20:30684081-30684505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-751
               
               
               Cow position:chr20:15064511-15064975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 346

               
               
               Conread position:305-753
               
               
               Cow position:chr20:22206285-22206747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:312
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:306-414
               
               
               Cow position:chr20:8004771-8004663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:306-525
               
               
               Cow position:chr20:35119067-35119287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 176

               
               
               Conread position:306-615
               
               
               Cow position:chr20:10846336-10846010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:306-646
               
               
               Cow position:chr20:10102803-10102461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:306-753
               
               
               Cow position:chr20:3252390-3251923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 235

               
               
               Conread position:306-753
               
               
               Cow position:chr20:8313691-8313229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:309-650
               
               
               Cow position:chr20:35973666-35973307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:309-653
               
               
               Cow position:chr20:29572435-29572088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):220, 21

               
               
               Conread position:313-712
               
               
               Cow position:chr20:18315830-18315428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:313-749
               
               
               Cow position:chr20:19437708-19438154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr20:822501-822978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:314-473
               
               
               Cow position:chr20:3032689-3032840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:324-751
               
               
               Cow position:chr20:9954208-9953777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 8

               
               
               Conread position:331-731
               
               
               Cow position:chr20:11679342-11678921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:335-753
               
               
               Cow position:chr20:13665418-13664999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):223, 37

               
               
               Conread position:358-568
               
               
               Cow position:chr20:24390168-24390382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:383-753
               
               
               Cow position:chr20:29948338-29948710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:397-753
               
               
               Cow position:chr20:8004392-8004015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 298

               
               
               Conread position:399-753
               
               
               Cow position:chr20:15291854-15292221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:450-753
               
               
               Cow position:chr20:25960991-25961314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:463-753
               
               
               Cow position:chr20:3032965-3033272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:517-750
               
               
               Cow position:chr20:13680089-13679850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:517-753
               
               
               Cow position:chr20:3684518-3684277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):57, 145

               
               
               Conread position:289-753
               
               
               Cow position:chr21:26638619-26638135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:294-709
               
               
               Cow position:chr21:23860635-23861068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:295-497
               
               
               Cow position:chr21:40271963-40271766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:295-746
               
               
               Cow position:chr21:145770-146246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:295-749
               
               
               Cow position:chr21:10566529-10566999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:295-750
               
               
               Cow position:chr21:48115958-48116429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr21:3778618-3779096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:295-753
               
               
               Cow position:chr21:10849930-10850410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr21:30600065-30599596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:296-753
               
               
               Cow position:chr21:4090503-4090979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:297-658
               
               
               Cow position:chr21:26819163-26818792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:297-751
               
               
               Cow position:chr21:33755152-33755629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:298-753
               
               
               Cow position:chr21:2530272-2529797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:298-753
               
               
               Cow position:chr21:3426340-3426815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:299-713
               
               
               Cow position:chr21:47035064-47034644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:299-753
               
               
               Cow position:chr21:2510509-2510981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:299-753
               
               
               Cow position:chr21:36714493-36714960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:300-656
               
               
               Cow position:chr21:3615150-3615519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 57

               
               
               Conread position:300-709
               
               
               Cow position:chr21:9891467-9891874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 110

               
               
               Conread position:300-709
               
               
               Cow position:chr21:21031596-21032009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:300-753
               
               
               Cow position:chr21:2883881-2883418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 108

               
               
               Conread position:300-753
               
               
               Cow position:chr21:4222829-4222363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:301-629
               
               
               Cow position:chr21:27708618-27708963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr21:2476654-2476197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:301-753
               
               
               Cow position:chr21:11453797-11453326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr21:12056141-12055671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr21:46915448-46915918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 21

               
               
               Conread position:303-753
               
               
               Cow position:chr21:216168-216618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:305-708
               
               
               Cow position:chr21:7267675-7267263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 105

               
               
               Conread position:306-525
               
               
               Cow position:chr21:1190903-1191130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-525
               
               
               Cow position:chr21:28529681-28529462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:306-701
               
               
               Cow position:chr21:2674776-2674354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 193

               
               
               Conread position:306-706
               
               
               Cow position:chr21:358878-359299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 187

               
               
               Conread position:306-750
               
               
               Cow position:chr21:2501799-2502213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:306-753
               
               
               Cow position:chr21:4183399-4183848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:306-753
               
               
               Cow position:chr21:13124132-13123676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 12

               
               
               Conread position:306-753
               
               
               Cow position:chr21:20744884-20744435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:306-753
               
               
               Cow position:chr21:30561663-30562132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr21:34292880-34293346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:306-753
               
               
               Cow position:chr21:47939340-47939801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 210

               
               
               Conread position:307-712
               
               
               Cow position:chr21:6699697-6699293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:307-716
               
               
               Cow position:chr21:11505449-11505876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:307-753
               
               
               Cow position:chr21:2541552-2541082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 298

               
               
               Conread position:308-753
               
               
               Cow position:chr21:39424926-39425393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 307

               
               
               Conread position:309-750
               
               
               Cow position:chr21:1292306-1291864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 23

               
               
               Conread position:310-630
               
               
               Cow position:chr21:21517072-21517391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:311-753
               
               
               Cow position:chr21:2416106-2416555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:311-753
               
               
               Cow position:chr21:31559788-31559326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 257

               
               
               Conread position:313-503
               
               
               Cow position:chr21:27624-27805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:313-700
               
               
               Cow position:chr21:34259343-34258957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:313-753
               
               
               Cow position:chr21:4076717-4077169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 92

               
               
               Conread position:324-684
               
               
               Cow position:chr21:2716798-2716425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:324-753
               
               
               Cow position:chr21:35596252-35596698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:325-753
               
               
               Cow position:chr21:4456710-4457156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:333-716
               
               
               Cow position:chr21:2769573-2769172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:333-750
               
               
               Cow position:chr21:47947998-47948435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 428

               
               
               Conread position:340-753
               
               
               Cow position:chr21:37044809-37045240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 284

               
               
               Conread position:364-753
               
               
               Cow position:chr21:2789071-2788662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:376-749
               
               
               Cow position:chr21:26823295-26822906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:400-753
               
               
               Cow position:chr21:21914241-21914615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:405-746
               
               
               Cow position:chr21:4590029-4589668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:406-752
               
               
               Cow position:chr21:23811838-23812204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:435-753
               
               
               Cow position:chr21:6339558-6339896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:435-753
               
               
               Cow position:chr21:8678368-8678030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr21:40271591-40271347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:538-753
               
               
               Cow position:chr21:1191270-1191493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:542-753
               
               
               Cow position:chr21:3798260-3798041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:606-753
               
               
               Cow position:chr21:26650218-26650371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:293-641
               
               
               Cow position:chr22:1285254-1284894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:294-716
               
               
               Cow position:chr22:8136514-8136088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:295-498
               
               
               Cow position:chr22:44456991-44457198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 155

               
               
               Conread position:295-499
               
               
               Cow position:chr22:46585634-46585428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:295-519
               
               
               Cow position:chr22:44395459-44395684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-751
               
               
               Cow position:chr22:17329062-17328584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-752
               
               
               Cow position:chr22:39469840-39469367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr22:561022-560549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 173

               
               
               Conread position:295-753
               
               
               Cow position:chr22:18816704-18816228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr22:19144020-19143542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:295-753
               
               
               Cow position:chr22:21589010-21589481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 303

               
               
               Conread position:295-753
               
               
               Cow position:chr22:31313022-31313498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:295-753
               
               
               Cow position:chr22:31335355-31334878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 410

               
               
               Conread position:295-753
               
               
               Cow position:chr22:34168009-34168489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr22:36861853-36861373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:298-453
               
               
               Cow position:chr22:36534281-36534126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:298-499
               
               
               Cow position:chr22:37067228-37067031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:298-750
               
               
               Cow position:chr22:41420001-41419540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr22:118134-117685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 118

               
               
               Conread position:298-753
               
               
               Cow position:chr22:1319077-1319554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 244

               
               
               Conread position:299-753
               
               
               Cow position:chr22:1270815-1270378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):227, 34

               
               
               Conread position:299-753
               
               
               Cow position:chr22:3278672-3278197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:299-753
               
               
               Cow position:chr22:5233619-5233148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:300-753
               
               
               Cow position:chr22:5672422-5672894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:301-643
               
               
               Cow position:chr22:6984938-6985296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-746
               
               
               Cow position:chr22:46636012-46635564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:301-750
               
               
               Cow position:chr22:46853036-46853495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):28, 35

               
               
               Conread position:301-753
               
               
               Cow position:chr22:10546334-10546802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:301-753
               
               
               Cow position:chr22:16200178-16200631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:301-753
               
               
               Cow position:chr22:24949513-24949987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr22:44489574-44490044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:302-708
               
               
               Cow position:chr22:37265140-37265562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:302-750
               
               
               Cow position:chr22:37131335-37131798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:302-751
               
               
               Cow position:chr22:33350855-33351323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 127

               
               
               Conread position:305-753
               
               
               Cow position:chr22:1321304-1321752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:305-753
               
               
               Cow position:chr22:34598366-34598822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:306-701
               
               
               Cow position:chr22:1293803-1293395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:306-749
               
               
               Cow position:chr22:37073479-37073060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:306-752
               
               
               Cow position:chr22:7277211-7277677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 223

               
               
               Conread position:306-753
               
               
               Cow position:chr22:327460-327013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:306-753
               
               
               Cow position:chr22:27310088-27309616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr22:36736462-36736915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:306-753
               
               
               Cow position:chr22:42990860-42991329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr22:44933668-44934136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 314

               
               
               Conread position:307-750
               
               
               Cow position:chr22:44353256-44352804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:308-716
               
               
               Cow position:chr22:3307030-3306628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 28

               
               
               Conread position:308-753
               
               
               Cow position:chr22:158219-157750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 308

               
               
               Conread position:309-751
               
               
               Cow position:chr22:5307809-5308258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:309-753
               
               
               Cow position:chr22:35672664-35672199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 333

               
               
               Conread position:310-752
               
               
               Cow position:chr22:5933286-5932840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 110

               
               
               Conread position:313-578
               
               
               Cow position:chr22:10077051-10076784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:313-716
               
               
               Cow position:chr22:36267073-36267476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:313-753
               
               
               Cow position:chr22:693329-693783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:313-753
               
               
               Cow position:chr22:32485636-32485195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 90

               
               
               Conread position:313-753
               
               
               Cow position:chr22:39882476-39882019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:313-753
               
               
               Cow position:chr22:44369921-44369467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 92

               
               
               Conread position:314-750
               
               
               Cow position:chr22:15851039-15851478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 47

               
               
               Conread position:314-751
               
               
               Cow position:chr22:6503973-6503522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 231

               
               
               Conread position:333-499
               
               
               Cow position:chr22:1047096-1047260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:336-753
               
               
               Cow position:chr22:11030679-11031117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:346-753
               
               
               Cow position:chr22:44475008-44475401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):74, 80

               
               
               Conread position:349-753
               
               
               Cow position:chr22:27283781-27284188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 321

               
               
               Conread position:350-731
               
               
               Cow position:chr22:27386698-27386296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:351-753
               
               
               Cow position:chr22:11782797-11782371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 57

               
               
               Conread position:359-748
               
               
               Cow position:chr22:44609356-44609742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:378-753
               
               
               Cow position:chr22:536862-537258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:386-753
               
               
               Cow position:chr22:871086-870709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):161, 223

               
               
               Conread position:396-698
               
               
               Cow position:chr22:12732065-12731753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:398-753
               
               
               Cow position:chr22:6020452-6020819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:400-753
               
               
               Cow position:chr22:13917287-13917660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:410-753
               
               
               Cow position:chr22:525881-525536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:446-753
               
               
               Cow position:chr22:36533907-36533586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:517-679
               
               
               Cow position:chr22:13772891-13773053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:517-751
               
               
               Cow position:chr22:46547751-46547509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr22:10909925-10909676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:519-753
               
               
               Cow position:chr22:1048326-1048560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):123, 136

               
               
               Conread position:523-753
               
               
               Cow position:chr22:20240922-20240684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:537-753
               
               
               Cow position:chr22:44396384-44396607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:542-748
               
               
               Cow position:chr22:8874929-8875141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:542-753
               
               
               Cow position:chr22:45975915-45976126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:560-753
               
               
               Cow position:chr22:309738-309935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:568-700
               
               
               Cow position:chr22:1860845-1860711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:295-520
               
               
               Cow position:chr23:2716029-2716252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 186

               
               
               Conread position:295-753
               
               
               Cow position:chr23:967670-967193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 421

               
               
               Conread position:295-753
               
               
               Cow position:chr23:2574243-2574693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:295-753
               
               
               Cow position:chr23:2795884-2795408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr23:4815752-4816232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr23:15525291-15525767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr23:19489218-19489699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:295-753
               
               
               Cow position:chr23:22147581-22147093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr23:27399181-27399661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 194

               
               
               Conread position:295-753
               
               
               Cow position:chr23:30636624-30636145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 411

               
               
               Conread position:297-499
               
               
               Cow position:chr23:31595496-31595294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:298-752
               
               
               Cow position:chr23:28216972-28217446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 307

               
               
               Conread position:298-753
               
               
               Cow position:chr23:5875090-5874622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 122

               
               
               Conread position:299-500
               
               
               Cow position:chr23:1330603-1330405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:300-571
               
               
               Cow position:chr23:8980805-8980525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):205, 119

               
               
               Conread position:300-705
               
               
               Cow position:chr23:16481667-16481268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:300-709
               
               
               Cow position:chr23:2340084-2340501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 162

               
               
               Conread position:300-751
               
               
               Cow position:chr23:988957-988493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 287

               
               
               Conread position:300-752
               
               
               Cow position:chr23:5779404-5778931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 318

               
               
               Conread position:300-753
               
               
               Cow position:chr23:1025367-1024903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:300-753
               
               
               Cow position:chr23:4276642-4277112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:300-753
               
               
               Cow position:chr23:7273344-7273788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:301-749
               
               
               Cow position:chr23:20301895-20302366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 330

               
               
               Conread position:301-753
               
               
               Cow position:chr23:31446498-31446972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:304-584
               
               
               Cow position:chr23:19017398-19017676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:304-750
               
               
               Cow position:chr23:16617163-16616692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:305-749
               
               
               Cow position:chr23:19950895-19950430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 300

               
               
               Conread position:305-751
               
               
               Cow position:chr23:4751701-4752143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:306-750
               
               
               Cow position:chr23:28913101-28913551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 198

               
               
               Conread position:306-753
               
               
               Cow position:chr23:2313549-2313083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 324

               
               
               Conread position:306-753
               
               
               Cow position:chr23:3882006-3881548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 97

               
               
               Conread position:306-753
               
               
               Cow position:chr23:22875940-22875518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:306-753
               
               
               Cow position:chr23:36031681-36031216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:307-747
               
               
               Cow position:chr23:19332705-19332257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 25

               
               
               Conread position:308-498
               
               
               Cow position:chr23:16616173-16615986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:310-753
               
               
               Cow position:chr23:15220204-15219734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 332

               
               
               Conread position:311-753
               
               
               Cow position:chr23:4434158-4434617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 344

               
               
               Conread position:313-716
               
               
               Cow position:chr23:3013331-3013762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:313-753
               
               
               Cow position:chr23:4359526-4359987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:314-753
               
               
               Cow position:chr23:2027418-2026962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 93

               
               
               Conread position:314-753
               
               
               Cow position:chr23:4640927-4640467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 329

               
               
               Conread position:314-753
               
               
               Cow position:chr23:15176772-15177231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 375

               
               
               Conread position:317-716
               
               
               Cow position:chr23:11778186-11778586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 199

               
               
               Conread position:324-499
               
               
               Cow position:chr23:2765669-2765495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:331-598
               
               
               Cow position:chr23:7750107-7750388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 197

               
               
               Conread position:333-746
               
               
               Cow position:chr23:4888397-4888823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 233

               
               
               Conread position:366-753
               
               
               Cow position:chr23:2524446-2524040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:396-753
               
               
               Cow position:chr23:14965967-14965595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 225

               
               
               Conread position:400-753
               
               
               Cow position:chr23:20156450-20156060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:423-753
               
               
               Cow position:chr23:38578099-38578434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:472-753
               
               
               Cow position:chr23:2716259-2716545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:517-753
               
               
               Cow position:chr23:2757507-2757751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr23:25684141-25683904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:518-753
               
               
               Cow position:chr23:29474639-29474400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:519-753
               
               
               Cow position:chr23:31591893-31591645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:542-709
               
               
               Cow position:chr23:10903467-10903637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:549-753
               
               
               Cow position:chr23:31595292-31595079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:564-753
               
               
               Cow position:chr23:19450221-19450412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:290-454
               
               
               Cow position:chr24:35990894-35990737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:294-750
               
               
               Cow position:chr24:6335458-6335923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:294-753
               
               
               Cow position:chr24:12161641-12162118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:295-544
               
               
               Cow position:chr24:13181574-13181336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr24:12085963-12086441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr24:12131718-12131243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:295-753
               
               
               Cow position:chr24:14384848-14384372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:295-753
               
               
               Cow position:chr24:19833147-19833628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:296-716
               
               
               Cow position:chr24:6351961-6352387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):127, 225

               
               
               Conread position:297-749
               
               
               Cow position:chr24:9188966-9188492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:297-749
               
               
               Cow position:chr24:16084894-16084421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:297-753
               
               
               Cow position:chr24:33933134-33933609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 126

               
               
               Conread position:298-716
               
               
               Cow position:chr24:38635517-38635956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:299-678
               
               
               Cow position:chr24:7060870-7061264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 230

               
               
               Conread position:300-448
               
               
               Cow position:chr24:37216496-37216651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:300-684
               
               
               Cow position:chr24:17187315-17187710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 220

               
               
               Conread position:300-753
               
               
               Cow position:chr24:4415753-4415286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:300-753
               
               
               Cow position:chr24:35838857-35838373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:301-658
               
               
               Cow position:chr24:2635889-2636260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 333

               
               
               Conread position:301-752
               
               
               Cow position:chr24:33739573-33739095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:301-753
               
               
               Cow position:chr24:6025327-6024853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr24:6083786-6084260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr24:6434010-6434483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 389

               
               
               Conread position:301-753
               
               
               Cow position:chr24:12114261-12113803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 18

               
               
               Conread position:301-753
               
               
               Cow position:chr24:22792946-22793415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:301-753
               
               
               Cow position:chr24:44017315-44017789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-751
               
               
               Cow position:chr24:36707630-36708087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:303-620
               
               
               Cow position:chr24:12288949-12288624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):199, 16

               
               
               Conread position:305-753
               
               
               Cow position:chr24:12236831-12237297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:306-709
               
               
               Cow position:chr24:12224705-12224268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:306-709
               
               
               Cow position:chr24:14390947-14390540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:306-753
               
               
               Cow position:chr24:12485543-12485074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr24:12797984-12797525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:306-753
               
               
               Cow position:chr24:35841838-35841380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 167

               
               
               Conread position:307-481
               
               
               Cow position:chr24:6057450-6057625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:307-670
               
               
               Cow position:chr24:6645193-6645569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:307-745
               
               
               Cow position:chr24:8029926-8030386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:307-753
               
               
               Cow position:chr24:6537337-6537784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:307-753
               
               
               Cow position:chr24:16649524-16649074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 216

               
               
               Conread position:308-753
               
               
               Cow position:chr24:15392527-15392096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:308-753
               
               
               Cow position:chr24:36560302-36559844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:309-630
               
               
               Cow position:chr24:13531753-13531422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:313-716
               
               
               Cow position:chr24:13187970-13188387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 99

               
               
               Conread position:316-452
               
               
               Cow position:chr24:37301292-37301159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:319-729
               
               
               Cow position:chr24:39678220-39678628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 105

               
               
               Conread position:323-716
               
               
               Cow position:chr24:14873549-14873148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):100, 166

               
               
               Conread position:331-753
               
               
               Cow position:chr24:1447370-1447799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:360-751
               
               
               Cow position:chr24:17303767-17303371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:362-753
               
               
               Cow position:chr24:14584926-14585319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:383-753
               
               
               Cow position:chr24:148763-148376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:383-753
               
               
               Cow position:chr24:22951988-22952379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:385-752
               
               
               Cow position:chr24:9092419-9092040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 222

               
               
               Conread position:388-753
               
               
               Cow position:chr24:40548731-40549117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 238

               
               
               Conread position:424-645
               
               
               Cow position:chr24:35987454-35987228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:424-708
               
               
               Cow position:chr24:40654283-40654582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:445-753
               
               
               Cow position:chr24:37216919-37217243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 230

               
               
               Conread position:523-742
               
               
               Cow position:chr24:17696964-17696741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):135, 52

               
               
               Conread position:524-709
               
               
               Cow position:chr24:6660600-6660414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:542-753
               
               
               Cow position:chr24:12335750-12335531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:550-753
               
               
               Cow position:chr24:29187319-29187526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:556-753
               
               
               Cow position:chr24:7091555-7091348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:558-753
               
               
               Cow position:chr24:13524145-13524347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:266-716
               
               
               Cow position:chr25:14015868-14016323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:294-749
               
               
               Cow position:chr25:20777176-20776702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:295-619
               
               
               Cow position:chr25:26866943-26867272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 259

               
               
               Conread position:295-753
               
               
               Cow position:chr25:13780756-13781229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:295-753
               
               
               Cow position:chr25:18890295-18889817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 357

               
               
               Conread position:295-753
               
               
               Cow position:chr25:20629297-20629770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 382

               
               
               Conread position:295-753
               
               
               Cow position:chr25:22147215-22147694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:295-753
               
               
               Cow position:chr25:25506370-25506848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 344

               
               
               Conread position:295-753
               
               
               Cow position:chr25:26278986-26279456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 160

               
               
               Conread position:297-753
               
               
               Cow position:chr25:19288624-19288141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):202, 122

               
               
               Conread position:299-753
               
               
               Cow position:chr25:19916808-19917283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:300-751
               
               
               Cow position:chr25:34656719-34656249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:300-753
               
               
               Cow position:chr25:11375620-11375149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 124

               
               
               Conread position:300-753
               
               
               Cow position:chr25:12759868-12759398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:301-687
               
               
               Cow position:chr25:17560869-17560476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:301-715
               
               
               Cow position:chr25:33991329-33990902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 156

               
               
               Conread position:301-749
               
               
               Cow position:chr25:17589817-17589359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:301-749
               
               
               Cow position:chr25:26921957-26922412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:301-753
               
               
               Cow position:chr25:35362693-35362230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:303-753
               
               
               Cow position:chr25:18092747-18093209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 166

               
               
               Conread position:304-751
               
               
               Cow position:chr25:18255626-18255171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:305-752
               
               
               Cow position:chr25:18276094-18275636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 447

               
               
               Conread position:305-753
               
               
               Cow position:chr25:32579695-32580165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:306-503
               
               
               Cow position:chr25:24171761-24171957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):164, 110

               
               
               Conread position:306-753
               
               
               Cow position:chr25:8674646-8675115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr25:36240284-36240755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:313-753
               
               
               Cow position:chr25:11933783-11933331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):118, 50

               
               
               Conread position:314-753
               
               
               Cow position:chr25:33243596-33244019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:316-567
               
               
               Cow position:chr25:18411550-18411283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:318-716
               
               
               Cow position:chr25:18060842-18060442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 296

               
               
               Conread position:319-753
               
               
               Cow position:chr25:17468947-17468499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:321-753
               
               
               Cow position:chr25:18027882-18027426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:425-753
               
               
               Cow position:chr25:12942849-12942501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):111, 211

               
               
               Conread position:517-751
               
               
               Cow position:chr25:33665909-33665676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:523-716
               
               
               Cow position:chr25:18421630-18421825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:524-753
               
               
               Cow position:chr25:27022604-27022367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:530-753
               
               
               Cow position:chr25:18195130-18194899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:590-753
               
               
               Cow position:chr25:18303431-18303600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:295-594
               
               
               Cow position:chr26:6850433-6850119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr26:5674908-5675379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:295-753
               
               
               Cow position:chr26:9563617-9563138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 410

               
               
               Conread position:298-749
               
               
               Cow position:chr26:4605435-4604971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:298-753
               
               
               Cow position:chr26:11254314-11253836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:298-753
               
               
               Cow position:chr26:12574651-12574189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:300-656
               
               
               Cow position:chr26:11537086-11536719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:301-499
               
               
               Cow position:chr26:23605153-23604951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-520
               
               
               Cow position:chr26:9112213-9112434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr26:3031062-3030609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:301-753
               
               
               Cow position:chr26:3691558-3692017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:301-753
               
               
               Cow position:chr26:8869624-8870102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr26:12588816-12588343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:301-753
               
               
               Cow position:chr26:15145010-15144540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:301-753
               
               
               Cow position:chr26:30782516-30782963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:305-716
               
               
               Cow position:chr26:20254823-20255233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:306-753
               
               
               Cow position:chr26:19351761-19351294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:307-708
               
               
               Cow position:chr26:3074285-3074671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:307-753
               
               
               Cow position:chr26:17397176-17396711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr26:2198387-2198846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 295

               
               
               Conread position:313-753
               
               
               Cow position:chr26:2352598-2352140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 391

               
               
               Conread position:313-753
               
               
               Cow position:chr26:18854848-18855308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 438

               
               
               Conread position:345-753
               
               
               Cow position:chr26:30589577-30589150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 41

               
               
               Conread position:356-520
               
               
               Cow position:chr26:6602009-6602175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:396-750
               
               
               Cow position:chr26:12656138-12656492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:523-753
               
               
               Cow position:chr26:8918833-8919070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:537-753
               
               
               Cow position:chr26:18852216-18852439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 201

               
               
               Conread position:556-752
               
               
               Cow position:chr26:12666123-12666325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:556-753
               
               
               Cow position:chr26:9112753-9112958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:556-753
               
               
               Cow position:chr26:23603751-23603547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:557-750
               
               
               Cow position:chr26:9845558-9845361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:560-751
               
               
               Cow position:chr26:9849902-9849708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:560-751
               
               
               Cow position:chr26:9853412-9853219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:573-715
               
               
               Cow position:chr26:4806507-4806364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:576-749
               
               
               Cow position:chr26:4334182-4334361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:295-702
               
               
               Cow position:chr27:23334841-23335264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-746
               
               
               Cow position:chr27:14460778-14460306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:295-750
               
               
               Cow position:chr27:25805203-25804741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 376

               
               
               Conread position:295-752
               
               
               Cow position:chr27:26324492-26324971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr27:1209030-1209508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:295-753
               
               
               Cow position:chr27:27662572-27663057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:298-503
               
               
               Cow position:chr27:27051346-27051552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:298-753
               
               
               Cow position:chr27:15278383-15277913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 315

               
               
               Conread position:300-716
               
               
               Cow position:chr27:28890417-28890841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:301-748
               
               
               Cow position:chr27:25160380-25160845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:301-749
               
               
               Cow position:chr27:16034708-16034241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:301-753
               
               
               Cow position:chr27:15541012-15541486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr27:26226989-26227450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):200, 96

               
               
               Conread position:305-753
               
               
               Cow position:chr27:26556287-26555847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:306-751
               
               
               Cow position:chr27:892901-893362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:306-753
               
               
               Cow position:chr27:2364440-2364907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr27:5910556-5911020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:306-753
               
               
               Cow position:chr27:25002837-25002379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 113

               
               
               Conread position:307-683
               
               
               Cow position:chr27:21288521-21288154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:309-520
               
               
               Cow position:chr27:13897887-13898096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 172

               
               
               Conread position:311-651
               
               
               Cow position:chr27:25999361-25999018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:311-753
               
               
               Cow position:chr27:9993505-9993048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:313-523
               
               
               Cow position:chr27:25116943-25117151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:313-753
               
               
               Cow position:chr27:16439027-16439485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 90

               
               
               Conread position:488-753
               
               
               Cow position:chr27:16432297-16432573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 247

               
               
               Conread position:517-731
               
               
               Cow position:chr27:27051595-27051811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:517-753
               
               
               Cow position:chr27:27753283-27753039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:523-709
               
               
               Cow position:chr27:26035136-26034946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:537-722
               
               
               Cow position:chr27:27197436-27197247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:295-497
               
               
               Cow position:chr28:13522449-13522653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr28:34593565-34593793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 186

               
               
               Conread position:295-591
               
               
               Cow position:chr28:29819292-29819602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-729
               
               
               Cow position:chr28:26426550-26426104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:295-751
               
               
               Cow position:chr28:5565583-5566053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 422

               
               
               Conread position:295-751
               
               
               Cow position:chr28:10582263-10581787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 361

               
               
               Conread position:295-752
               
               
               Cow position:chr28:14705949-14705471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:295-753
               
               
               Cow position:chr28:782120-782596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:295-753
               
               
               Cow position:chr28:1815145-1814666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:295-753
               
               
               Cow position:chr28:2083326-2083798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 208

               
               
               Conread position:295-753
               
               
               Cow position:chr28:12150044-12150506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr28:17388203-17388683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr28:17667790-17667312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:295-753
               
               
               Cow position:chr28:22261429-22260949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr28:32792657-32792178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 342

               
               
               Conread position:297-552
               
               
               Cow position:chr28:1168439-1168174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 161

               
               
               Conread position:297-753
               
               
               Cow position:chr28:1952863-1953331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:297-753
               
               
               Cow position:chr28:7001713-7002191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:298-629
               
               
               Cow position:chr28:15681619-15681951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 116

               
               
               Conread position:298-753
               
               
               Cow position:chr28:9155558-9155079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:298-753
               
               
               Cow position:chr28:34648663-34649144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:300-612
               
               
               Cow position:chr28:17330793-17330472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:300-750
               
               
               Cow position:chr28:8721715-8721249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:300-750
               
               
               Cow position:chr28:21358748-21359200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 103

               
               
               Conread position:300-751
               
               
               Cow position:chr28:21325517-21325990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 133

               
               
               Conread position:300-753
               
               
               Cow position:chr28:9953863-9954334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 315

               
               
               Conread position:300-753
               
               
               Cow position:chr28:13459699-13460171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:301-715
               
               
               Cow position:chr28:15950709-15951139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 249

               
               
               Conread position:301-753
               
               
               Cow position:chr28:13441149-13440675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr28:14750276-14750748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 264

               
               
               Conread position:305-716
               
               
               Cow position:chr28:18520728-18520303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 309

               
               
               Conread position:306-520
               
               
               Cow position:chr28:5796555-5796764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:306-712
               
               
               Cow position:chr28:7816967-7817360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:306-753
               
               
               Cow position:chr28:1387657-1387198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:306-753
               
               
               Cow position:chr28:5812442-5812893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:307-753
               
               
               Cow position:chr28:6780593-6780132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:308-517
               
               
               Cow position:chr28:3774098-3773891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:308-753
               
               
               Cow position:chr28:7901092-7901556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 13

               
               
               Conread position:309-751
               
               
               Cow position:chr28:10619363-10618915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:311-753
               
               
               Cow position:chr28:7821993-7822459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr28:2591662-2592116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:313-753
               
               
               Cow position:chr28:15920725-15920263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr28:24587174-24587636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:314-753
               
               
               Cow position:chr28:8378309-8378770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:335-753
               
               
               Cow position:chr28:4381054-4380643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 81

               
               
               Conread position:336-561
               
               
               Cow position:chr28:2846729-2846508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:345-525
               
               
               Cow position:chr28:5752104-5751922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:345-699
               
               
               Cow position:chr28:24652064-24652427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 247

               
               
               Conread position:345-752
               
               
               Cow position:chr28:2989909-2989516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 72

               
               
               Conread position:345-753
               
               
               Cow position:chr28:1504628-1505053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 183

               
               
               Conread position:345-753
               
               
               Cow position:chr28:3193018-3192590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 238

               
               
               Conread position:345-753
               
               
               Cow position:chr28:15378219-15377791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 406

               
               
               Conread position:369-753
               
               
               Cow position:chr28:24667378-24667781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:377-525
               
               
               Cow position:chr28:12648934-12648785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:387-753
               
               
               Cow position:chr28:12410395-12410024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:407-753
               
               
               Cow position:chr28:12233141-12232800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:412-708
               
               
               Cow position:chr28:23727290-23727003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:417-753
               
               
               Cow position:chr28:7740340-7740687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:429-753
               
               
               Cow position:chr28:7790440-7790083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:444-753
               
               
               Cow position:chr28:9137179-9136850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:517-753
               
               
               Cow position:chr28:2724933-2724689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:537-753
               
               
               Cow position:chr28:22065759-22065539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:542-753
               
               
               Cow position:chr28:5751724-5751505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:542-753
               
               
               Cow position:chr28:34593961-34594180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:581-753
               
               
               Cow position:chr28:29819757-29819935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:595-750
               
               
               Cow position:chr28:5797470-5797630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:602-753
               
               
               Cow position:chr28:1931940-1931783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:295-431
               
               
               Cow position:chr29:45587610-45587472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-745
               
               
               Cow position:chr29:48788-48319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 274

               
               
               Conread position:295-751
               
               
               Cow position:chr29:20250847-20251324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 465

               
               
               Conread position:295-753
               
               
               Cow position:chr29:2689593-2690068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr29:2841677-2841206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr29:5957291-5957771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:295-753
               
               
               Cow position:chr29:6266804-6266334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:295-753
               
               
               Cow position:chr29:7431528-7431048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr29:10648557-10648084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr29:10824269-10823802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:295-753
               
               
               Cow position:chr29:23975520-23976007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr29:25932856-25932377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 193

               
               
               Conread position:295-753
               
               
               Cow position:chr29:26165134-26164655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr29:34800118-34799641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr29:38226682-38227147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-753
               
               
               Cow position:chr29:39080018-39079545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 294

               
               
               Conread position:295-753
               
               
               Cow position:chr29:40503291-40502813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr29:45459407-45459880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:296-686
               
               
               Cow position:chr29:21427365-21426962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 344

               
               
               Conread position:297-750
               
               
               Cow position:chr29:13853330-13852861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:297-753
               
               
               Cow position:chr29:43322250-43322722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 438

               
               
               Conread position:298-708
               
               
               Cow position:chr29:4635269-4634857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:298-753
               
               
               Cow position:chr29:803634-803182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:298-753
               
               
               Cow position:chr29:10848423-10847925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr29:11048976-11049445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr29:21543680-21543202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:299-746
               
               
               Cow position:chr29:16109420-16109887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 245

               
               
               Conread position:300-750
               
               
               Cow position:chr29:2750689-2750253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 39

               
               
               Conread position:301-706
               
               
               Cow position:chr29:28060972-28060548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-741
               
               
               Cow position:chr29:15969454-15968996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 141

               
               
               Conread position:301-753
               
               
               Cow position:chr29:15895154-15894683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr29:32315734-32316208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr29:35296571-35297041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:303-753
               
               
               Cow position:chr29:15950481-15950024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 10

               
               
               Conread position:304-710
               
               
               Cow position:chr29:16017436-16017030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:305-477
               
               
               Cow position:chr29:2468241-2468058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:305-694
               
               
               Cow position:chr29:21246267-21246674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-709
               
               
               Cow position:chr29:36599612-36599212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):160, 109

               
               
               Conread position:305-750
               
               
               Cow position:chr29:9644023-9643592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:305-753
               
               
               Cow position:chr29:610913-610445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:306-564
               
               
               Cow position:chr29:12796765-12796503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:306-572
               
               
               Cow position:chr29:31121507-31121784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:306-751
               
               
               Cow position:chr29:19623545-19623082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:306-753
               
               
               Cow position:chr29:7840498-7840963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:306-753
               
               
               Cow position:chr29:19652807-19653275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr29:32539510-32539977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 386

               
               
               Conread position:307-753
               
               
               Cow position:chr29:14073239-14072780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:307-753
               
               
               Cow position:chr29:27250634-27250175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 404

               
               
               Conread position:308-753
               
               
               Cow position:chr29:104280-104734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:308-753
               
               
               Cow position:chr29:16022236-16022697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:309-700
               
               
               Cow position:chr29:39313888-39313481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 119

               
               
               Conread position:310-753
               
               
               Cow position:chr29:1714954-1715409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:313-678
               
               
               Cow position:chr29:31180830-31181212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-751
               
               
               Cow position:chr29:43366289-43365827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:313-753
               
               
               Cow position:chr29:2099551-2100012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chr29:16769839-16770290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 285

               
               
               Conread position:313-753
               
               
               Cow position:chr29:27041053-27040602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 107

               
               
               Conread position:324-753
               
               
               Cow position:chr29:30811253-30811695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:324-753
               
               
               Cow position:chr29:35196394-35196831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:331-753
               
               
               Cow position:chr29:42650052-42650451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:331-753
               
               
               Cow position:chr29:42801912-42802311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:346-751
               
               
               Cow position:chr29:17662661-17663069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 179

               
               
               Conread position:365-753
               
               
               Cow position:chr29:19884829-19885237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:393-753
               
               
               Cow position:chr29:27981127-27980750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:450-675
               
               
               Cow position:chr29:5983335-5983095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:482-753
               
               
               Cow position:chr29:45587469-45587193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:517-753
               
               
               Cow position:chr29:14585851-14586089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):60, 129

               
               
               Conread position:520-753
               
               
               Cow position:chr29:13581998-13582236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:523-753
               
               
               Cow position:chr29:670127-669890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:523-753
               
               
               Cow position:chr29:18857015-18856777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:556-753
               
               
               Cow position:chr29:12796400-12796198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:581-753
               
               
               Cow position:chr29:410536-410358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:290-753
               
               
               Cow position:chr3:18357272-18356802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):212, 46

               
               
               Conread position:292-750
               
               
               Cow position:chr3:51940801-51940339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 27

               
               
               Conread position:293-753
               
               
               Cow position:chr3:42580360-42579882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 168

               
               
               Conread position:294-709
               
               
               Cow position:chr3:17936457-17936027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:295-663
               
               
               Cow position:chr3:32842822-32842443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:295-707
               
               
               Cow position:chr3:21945797-21945372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 114

               
               
               Conread position:295-751
               
               
               Cow position:chr3:30314166-30314649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-752
               
               
               Cow position:chr3:48061216-48060748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:295-753
               
               
               Cow position:chr3:594195-594661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:295-753
               
               
               Cow position:chr3:2711352-2710877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:295-753
               
               
               Cow position:chr3:5883146-5883624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr3:10239258-10239734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr3:18542802-18542323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 188

               
               
               Conread position:295-753
               
               
               Cow position:chr3:18811109-18811588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:295-753
               
               
               Cow position:chr3:21183076-21182599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr3:23291799-23291322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 386

               
               
               Conread position:295-753
               
               
               Cow position:chr3:34031291-34030814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 185

               
               
               Conread position:295-753
               
               
               Cow position:chr3:36882306-36881837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr3:38866014-38866480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:295-753
               
               
               Cow position:chr3:40822994-40823472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 341

               
               
               Conread position:295-753
               
               
               Cow position:chr3:43040086-43039621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:295-753
               
               
               Cow position:chr3:49545567-49545122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr3:56340814-56340342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:295-753
               
               
               Cow position:chr3:59860971-59861451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr3:64017758-64017279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr3:69933003-69933479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr3:72629677-72630155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr3:78027805-78027325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:296-719
               
               
               Cow position:chr3:18729523-18729094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:297-753
               
               
               Cow position:chr3:56320918-56321400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 318

               
               
               Conread position:298-716
               
               
               Cow position:chr3:3980000-3980434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 15

               
               
               Conread position:298-751
               
               
               Cow position:chr3:57499900-57499447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 21

               
               
               Conread position:298-753
               
               
               Cow position:chr3:5047572-5047099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr3:45869588-45869132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):181, 59

               
               
               Conread position:298-753
               
               
               Cow position:chr3:55230084-55229616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 311

               
               
               Conread position:299-731
               
               
               Cow position:chr3:15989421-15988972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:299-753
               
               
               Cow position:chr3:6685072-6685546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:299-753
               
               
               Cow position:chr3:22335503-22335973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 376

               
               
               Conread position:300-700
               
               
               Cow position:chr3:14634487-14634084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 95

               
               
               Conread position:300-753
               
               
               Cow position:chr3:3054224-3054681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 109

               
               
               Conread position:300-753
               
               
               Cow position:chr3:5830017-5829544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 247

               
               
               Conread position:300-753
               
               
               Cow position:chr3:9716423-9716899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 133

               
               
               Conread position:300-753
               
               
               Cow position:chr3:50128261-50127795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 5

               
               
               Conread position:300-753
               
               
               Cow position:chr3:64358552-64358085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:300-753
               
               
               Cow position:chr3:70084031-70083567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 68

               
               
               Conread position:300-753
               
               
               Cow position:chr3:77474374-77474846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 137

               
               
               Conread position:301-477
               
               
               Cow position:chr3:7168216-7168393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):18, 108

               
               
               Conread position:301-648
               
               
               Cow position:chr3:72704809-72705172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-716
               
               
               Cow position:chr3:37968696-37969123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-749
               
               
               Cow position:chr3:46678301-46677833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr3:2917074-2917546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr3:6782002-6782469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr3:7159131-7158648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 431

               
               
               Conread position:301-753
               
               
               Cow position:chr3:17829035-17828564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr3:24314090-24314554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 319

               
               
               Conread position:301-753
               
               
               Cow position:chr3:32146473-32146005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr3:41212126-41211652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr3:45032353-45032826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 243

               
               
               Conread position:301-753
               
               
               Cow position:chr3:47179592-47179118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 409

               
               
               Conread position:301-753
               
               
               Cow position:chr3:57856348-57856822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr3:64028471-64028001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:301-753
               
               
               Cow position:chr3:64650244-64650710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 282

               
               
               Conread position:302-753
               
               
               Cow position:chr3:46861685-46861218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:303-520
               
               
               Cow position:chr3:52865132-52864917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:303-753
               
               
               Cow position:chr3:2653724-2654192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:303-753
               
               
               Cow position:chr3:57485109-57484644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:305-753
               
               
               Cow position:chr3:14440111-14439676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:305-753
               
               
               Cow position:chr3:26949133-26949597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:305-753
               
               
               Cow position:chr3:42431849-42432316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr3:49614360-49613892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:306-499
               
               
               Cow position:chr3:39326308-39326499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:306-525
               
               
               Cow position:chr3:40340344-40340126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:306-525
               
               
               Cow position:chr3:49677379-49677596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:306-684
               
               
               Cow position:chr3:24591993-24591628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:306-753
               
               
               Cow position:chr3:5954570-5954101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr3:19757343-19756874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 179

               
               
               Conread position:306-753
               
               
               Cow position:chr3:19878279-19878743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 238

               
               
               Conread position:306-753
               
               
               Cow position:chr3:19938530-19938970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 218

               
               
               Conread position:306-753
               
               
               Cow position:chr3:31354636-31354180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:306-753
               
               
               Cow position:chr3:32623386-32622950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:306-753
               
               
               Cow position:chr3:66119276-66119740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:307-573
               
               
               Cow position:chr3:56650645-56650371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):194, 83

               
               
               Conread position:307-750
               
               
               Cow position:chr3:50914924-50915388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:307-753
               
               
               Cow position:chr3:3522632-3523106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:307-753
               
               
               Cow position:chr3:45775450-45775012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:308-674
               
               
               Cow position:chr3:63005530-63005144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:309-673
               
               
               Cow position:chr3:4285506-4285887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:309-753
               
               
               Cow position:chr3:58947077-58947543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:310-655
               
               
               Cow position:chr3:7322938-7323292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):103, 175

               
               
               Conread position:310-702
               
               
               Cow position:chr3:80871529-80871925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 104

               
               
               Conread position:311-750
               
               
               Cow position:chr3:48231359-48230930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:311-751
               
               
               Cow position:chr3:207538-207078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 182

               
               
               Conread position:311-753
               
               
               Cow position:chr3:31898350-31897892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 192

               
               
               Conread position:311-753
               
               
               Cow position:chr3:47082034-47081573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:313-525
               
               
               Cow position:chr3:36691564-36691355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:313-572
               
               
               Cow position:chr3:17951985-17952258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:313-716
               
               
               Cow position:chr3:53410548-53410957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:313-753
               
               
               Cow position:chr3:472163-472617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:313-753
               
               
               Cow position:chr3:54865066-54864614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:313-753
               
               
               Cow position:chr3:66891336-66890878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:315-753
               
               
               Cow position:chr3:2633555-2634010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 112

               
               
               Conread position:323-753
               
               
               Cow position:chr3:3805994-3806424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 96

               
               
               Conread position:323-753
               
               
               Cow position:chr3:18463941-18463507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 66

               
               
               Conread position:331-753
               
               
               Cow position:chr3:60210533-60210093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:332-753
               
               
               Cow position:chr3:4026919-4027357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:333-753
               
               
               Cow position:chr3:75041518-75041083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:336-753
               
               
               Cow position:chr3:66990451-66990871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 131

               
               
               Conread position:343-750
               
               
               Cow position:chr3:19943720-19944132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:343-753
               
               
               Cow position:chr3:15177967-15178396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:345-753
               
               
               Cow position:chr3:66638396-66638825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:354-753
               
               
               Cow position:chr3:14754627-14754212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:355-753
               
               
               Cow position:chr3:56097207-56097610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):180, 84

               
               
               Conread position:359-708
               
               
               Cow position:chr3:49333072-49333423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):207, 57

               
               
               Conread position:370-503
               
               
               Cow position:chr3:2909412-2909278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:370-708
               
               
               Cow position:chr3:63242040-63241719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):146, 56

               
               
               Conread position:388-574
               
               
               Cow position:chr3:57900915-57901114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:393-753
               
               
               Cow position:chr3:7168498-7168878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):6, 173

               
               
               Conread position:396-750
               
               
               Cow position:chr3:29594911-29595276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:396-753
               
               
               Cow position:chr3:54783251-54783629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:414-753
               
               
               Cow position:chr3:34093697-34093364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:415-753
               
               
               Cow position:chr3:18859149-18859500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:427-753
               
               
               Cow position:chr3:53515359-53515698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):82, 6

               
               
               Conread position:445-746
               
               
               Cow position:chr3:66619936-66620251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):77, 144

               
               
               Conread position:452-750
               
               
               Cow position:chr3:19802423-19802733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):6, 192

               
               
               Conread position:517-753
               
               
               Cow position:chr3:23214220-23213977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:517-753
               
               
               Cow position:chr3:26822652-26822424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:518-750
               
               
               Cow position:chr3:52864631-52864384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:537-725
               
               
               Cow position:chr3:13518420-13518228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:537-746
               
               
               Cow position:chr3:49137679-49137462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:539-750
               
               
               Cow position:chr3:2908489-2908275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:541-750
               
               
               Cow position:chr3:39326584-39326799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:541-753
               
               
               Cow position:chr3:49677652-49677871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:561-751
               
               
               Cow position:chr3:45895673-45895475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:561-751
               
               
               Cow position:chr3:45974382-45974580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:568-753
               
               
               Cow position:chr3:40157611-40157421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:573-716
               
               
               Cow position:chr3:68700070-68699925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:594-753
               
               
               Cow position:chr3:77423601-77423760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:293-753
               
               
               Cow position:chr4:6215144-6214669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:294-753
               
               
               Cow position:chr4:29532304-29531825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 411

               
               
               Conread position:295-451
               
               
               Cow position:chr4:46712931-46712773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-607
               
               
               Cow position:chr4:1050210-1049881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-688
               
               
               Cow position:chr4:31668727-31669129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:295-751
               
               
               Cow position:chr4:44724493-44724971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr4:355325-355799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:295-753
               
               
               Cow position:chr4:4905563-4906036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 204

               
               
               Conread position:295-753
               
               
               Cow position:chr4:6490936-6490475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 208

               
               
               Conread position:295-753
               
               
               Cow position:chr4:12241810-12241328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr4:13491986-13492465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 457

               
               
               Conread position:295-753
               
               
               Cow position:chr4:16359302-16359773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr4:17926844-17926365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr4:24445789-24445311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:295-753
               
               
               Cow position:chr4:36895784-36896259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 314

               
               
               Conread position:295-753
               
               
               Cow position:chr4:43320226-43319756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 381

               
               
               Conread position:295-753
               
               
               Cow position:chr4:43880520-43880998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:295-753
               
               
               Cow position:chr4:45049885-45049408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr4:48025812-48026287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 233

               
               
               Conread position:297-752
               
               
               Cow position:chr4:41330853-41331326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 292

               
               
               Conread position:298-642
               
               
               Cow position:chr4:11383831-11384177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:298-753
               
               
               Cow position:chr4:496521-496068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:300
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):226, 6

               
               
               Conread position:299-749
               
               
               Cow position:chr4:16056018-16056487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:300-572
               
               
               Cow position:chr4:10408193-10408482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:300-753
               
               
               Cow position:chr4:8598715-8598267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 89

               
               
               Conread position:300-753
               
               
               Cow position:chr4:21338564-21338113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 58

               
               
               Conread position:301-571
               
               
               Cow position:chr4:23114760-23114476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:301-709
               
               
               Cow position:chr4:3125197-3125619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 264

               
               
               Conread position:301-716
               
               
               Cow position:chr4:33493227-33493657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 314

               
               
               Conread position:301-753
               
               
               Cow position:chr4:602413-602883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr4:1931204-1930734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 337

               
               
               Conread position:301-753
               
               
               Cow position:chr4:13547444-13547919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr4:47764754-47764281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 454

               
               
               Conread position:301-753
               
               
               Cow position:chr4:65224118-65223644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr4:528414-528883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr4:18425096-18424635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 98

               
               
               Conread position:305-753
               
               
               Cow position:chr4:30308032-30307569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 97

               
               
               Conread position:305-753
               
               
               Cow position:chr4:32211588-32212057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr4:3961016-3961481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:306-753
               
               
               Cow position:chr4:11393910-11393456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:306-753
               
               
               Cow position:chr4:18516317-18516786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr4:66925426-66925886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:307-708
               
               
               Cow position:chr4:40824823-40824412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:307-716
               
               
               Cow position:chr4:1464498-1464076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:307-753
               
               
               Cow position:chr4:101507-101043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 277

               
               
               Conread position:307-753
               
               
               Cow position:chr4:39272516-39272046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:308-753
               
               
               Cow position:chr4:34185434-34184990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:310-748
               
               
               Cow position:chr4:46663629-46664076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 116

               
               
               Conread position:313-524
               
               
               Cow position:chr4:27442518-27442731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:313-750
               
               
               Cow position:chr4:28830468-28830916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:313-753
               
               
               Cow position:chr4:5879607-5880055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 35

               
               
               Conread position:313-753
               
               
               Cow position:chr4:6269199-6268738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 218

               
               
               Conread position:315-753
               
               
               Cow position:chr4:66179554-66179098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 17

               
               
               Conread position:324-525
               
               
               Cow position:chr4:54190302-54190497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:331-753
               
               
               Cow position:chr4:157963-158405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 101

               
               
               Conread position:335-525
               
               
               Cow position:chr4:1371559-1371373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:341-573
               
               
               Cow position:chr4:12608044-12607803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:347-753
               
               
               Cow position:chr4:25600148-25599729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:356-753
               
               
               Cow position:chr4:27332926-27333325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 52

               
               
               Conread position:359-503
               
               
               Cow position:chr4:33630524-33630670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:371-753
               
               
               Cow position:chr4:26887356-26886973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:373-753
               
               
               Cow position:chr4:47718120-47717717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:381-707
               
               
               Cow position:chr4:969542-969204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:383-709
               
               
               Cow position:chr4:40406085-40405754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:385-716
               
               
               Cow position:chr4:24198696-24198365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:387-748
               
               
               Cow position:chr4:1497249-1496874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 164

               
               
               Conread position:396-753
               
               
               Cow position:chr4:11618374-11618743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:396-753
               
               
               Cow position:chr4:57979143-57979518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):29, 227

               
               
               Conread position:397-753
               
               
               Cow position:chr4:33073584-33073220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:403-708
               
               
               Cow position:chr4:21564667-21564961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:441-709
               
               
               Cow position:chr4:30283221-30283492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:459-753
               
               
               Cow position:chr4:60264984-60264678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:491-753
               
               
               Cow position:chr4:23493363-23493626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:517-751
               
               
               Cow position:chr4:41119659-41119901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:537-753
               
               
               Cow position:chr4:12586964-12587188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:543-753
               
               
               Cow position:chr4:61256568-61256781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 179

               
               
               Conread position:568-716
               
               
               Cow position:chr4:4176128-4176278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:568-753
               
               
               Cow position:chr4:9355072-9354881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:290-714
               
               
               Cow position:chr5:63480363-63479937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:295-490
               
               
               Cow position:chr5:12185165-12185362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:295-608
               
               
               Cow position:chr5:4384734-4385060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:295-657
               
               
               Cow position:chr5:23227768-23228138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):186, 24

               
               
               Conread position:295-674
               
               
               Cow position:chr5:34696089-34696484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:295-712
               
               
               Cow position:chr5:7273371-7273791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:295-753
               
               
               Cow position:chr5:2430627-2430148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:295-753
               
               
               Cow position:chr5:2913955-2914435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:3785316-3785774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr5:10918302-10918782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:24098152-24098633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:30578827-30579306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 269

               
               
               Conread position:295-753
               
               
               Cow position:chr5:32945385-32945858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:37731850-37732330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:48809209-48808731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:295-753
               
               
               Cow position:chr5:49119773-49119297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr5:57483042-57482562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr5:64782512-64782034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:297-752
               
               
               Cow position:chr5:46739077-46738602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 308

               
               
               Conread position:297-753
               
               
               Cow position:chr5:1342288-1341811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 189

               
               
               Conread position:298-749
               
               
               Cow position:chr5:31706082-31706554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 412

               
               
               Conread position:298-753
               
               
               Cow position:chr5:26090316-26089847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:298-753
               
               
               Cow position:chr5:45699789-45700250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 160

               
               
               Conread position:298-753
               
               
               Cow position:chr5:46630918-46630457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 192

               
               
               Conread position:299-525
               
               
               Cow position:chr5:35299572-35299800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:299-689
               
               
               Cow position:chr5:46005873-46005460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:300-495
               
               
               Cow position:chr5:52804845-52805041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 172

               
               
               Conread position:300-503
               
               
               Cow position:chr5:23716434-23716236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:300-524
               
               
               Cow position:chr5:29123285-29123066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:300-750
               
               
               Cow position:chr5:41530059-41529612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:300-751
               
               
               Cow position:chr5:6158686-6158215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 339

               
               
               Conread position:300-753
               
               
               Cow position:chr5:416211-415738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 114

               
               
               Conread position:300-753
               
               
               Cow position:chr5:24329806-24330258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:300-753
               
               
               Cow position:chr5:27652478-27651998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 50

               
               
               Conread position:300-753
               
               
               Cow position:chr5:29008872-29009339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 28

               
               
               Conread position:300-753
               
               
               Cow position:chr5:34202458-34202919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:300-753
               
               
               Cow position:chr5:39165287-39164816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:300-753
               
               
               Cow position:chr5:46644220-46644671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:300-753
               
               
               Cow position:chr5:49593948-49593471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:301-447
               
               
               Cow position:chr5:23960597-23960451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:301-658
               
               
               Cow position:chr5:10844364-10843991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-695
               
               
               Cow position:chr5:53714767-53715176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-716
               
               
               Cow position:chr5:16104250-16103835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:301-746
               
               
               Cow position:chr5:59481766-59482231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:301-751
               
               
               Cow position:chr5:46659237-46659697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:301-753
               
               
               Cow position:chr5:2530785-2531255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 21

               
               
               Conread position:301-753
               
               
               Cow position:chr5:4019688-4019214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr5:10776742-10776280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:301-753
               
               
               Cow position:chr5:24576424-24576899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr5:26079708-26079234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr5:27909757-27909288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:301-753
               
               
               Cow position:chr5:29042022-29042495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 417

               
               
               Conread position:301-753
               
               
               Cow position:chr5:32771992-32772466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr5:41551414-41550943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:301-753
               
               
               Cow position:chr5:44458993-44459467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr5:48468764-48468295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:301-753
               
               
               Cow position:chr5:54932707-54932234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-622
               
               
               Cow position:chr5:27569667-27570001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:303-463
               
               
               Cow position:chr5:58747403-58747559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:303-525
               
               
               Cow position:chr5:28570211-28570434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:303-753
               
               
               Cow position:chr5:32733731-32733268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 180

               
               
               Conread position:304-716
               
               
               Cow position:chr5:26769333-26769753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:304-753
               
               
               Cow position:chr5:46775600-46776064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:305-749
               
               
               Cow position:chr5:46663516-46663983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:305-753
               
               
               Cow position:chr5:58195518-58195986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 156

               
               
               Conread position:305-753
               
               
               Cow position:chr5:59060140-59060602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 100

               
               
               Conread position:306-504
               
               
               Cow position:chr5:59282278-59282478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-750
               
               
               Cow position:chr5:18665477-18665940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 452

               
               
               Conread position:306-753
               
               
               Cow position:chr5:3504731-3504266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 278

               
               
               Conread position:306-753
               
               
               Cow position:chr5:9686895-9686444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 24

               
               
               Conread position:306-753
               
               
               Cow position:chr5:32674219-32673756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:307-477
               
               
               Cow position:chr5:6519412-6519575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:307-601
               
               
               Cow position:chr5:27488542-27488844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:307-626
               
               
               Cow position:chr5:51771828-51771493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 151

               
               
               Conread position:307-712
               
               
               Cow position:chr5:26054286-26054697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:307-753
               
               
               Cow position:chr5:51162433-51162883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:307-753
               
               
               Cow position:chr5:61020325-61019865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:316
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:308-517
               
               
               Cow position:chr5:12681990-12681789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:308-568
               
               
               Cow position:chr5:12644352-12644095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:309-716
               
               
               Cow position:chr5:31102077-31101654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 250

               
               
               Conread position:309-753
               
               
               Cow position:chr5:55627523-55627971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:313-749
               
               
               Cow position:chr5:14379686-14380143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-750
               
               
               Cow position:chr5:61273644-61273206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:313-753
               
               
               Cow position:chr5:3963994-3964448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 292

               
               
               Conread position:313-753
               
               
               Cow position:chr5:45182578-45182119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 92

               
               
               Conread position:313-753
               
               
               Cow position:chr5:47831577-47831127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:314-748
               
               
               Cow position:chr5:55097172-55096733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:314-751
               
               
               Cow position:chr5:4068515-4068972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 158

               
               
               Conread position:315-533
               
               
               Cow position:chr5:30088192-30087976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):214, 8

               
               
               Conread position:316-728
               
               
               Cow position:chr5:28006746-28007159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 55

               
               
               Conread position:324-753
               
               
               Cow position:chr5:49181816-49182252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 79

               
               
               Conread position:331-472
               
               
               Cow position:chr5:57976892-57977038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:331-748
               
               
               Cow position:chr5:23756038-23755640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):248, 79

               
               
               Conread position:335-746
               
               
               Cow position:chr5:47073457-47073880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:345-747
               
               
               Cow position:chr5:25207183-25206762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 62

               
               
               Conread position:345-753
               
               
               Cow position:chr5:28031041-28031461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:350-753
               
               
               Cow position:chr5:49518227-49518642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 57

               
               
               Conread position:373-562
               
               
               Cow position:chr5:23767882-23768078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:392-702
               
               
               Cow position:chr5:58061234-58060911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 300

               
               
               Conread position:399-751
               
               
               Cow position:chr5:14659479-14659113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):79, 165

               
               
               Conread position:405-753
               
               
               Cow position:chr5:6589406-6589037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:406-753
               
               
               Cow position:chr5:20972388-20972061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:412-751
               
               
               Cow position:chr5:41962612-41962256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:416-753
               
               
               Cow position:chr5:4088430-4088789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:432-753
               
               
               Cow position:chr5:25001004-25000659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:441-753
               
               
               Cow position:chr5:26069061-26068738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 146

               
               
               Conread position:517-753
               
               
               Cow position:chr5:5318016-5317773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:523-753
               
               
               Cow position:chr5:58819888-58819650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:534-716
               
               
               Cow position:chr5:52805124-52805309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:537-749
               
               
               Cow position:chr5:52433735-52433947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:547-708
               
               
               Cow position:chr5:39247606-39247448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:547-716
               
               
               Cow position:chr5:5786829-5786664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:556-693
               
               
               Cow position:chr5:27060465-27060323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:558-708
               
               
               Cow position:chr5:29436185-29436034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:558-753
               
               
               Cow position:chr5:57977037-57977242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:590-753
               
               
               Cow position:chr5:27489063-27489231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:623-753
               
               
               Cow position:chr5:17774192-17774056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:290-587
               
               
               Cow position:chr6:10054258-10054567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:293-702
               
               
               Cow position:chr6:68362669-68362251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:294-568
               
               
               Cow position:chr6:21686541-21686821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:295-435
               
               
               Cow position:chr6:51870-51730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:295-525
               
               
               Cow position:chr6:64714762-64714994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-575
               
               
               Cow position:chr6:47043785-47043491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-639
               
               
               Cow position:chr6:39437290-39437647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:295-684
               
               
               Cow position:chr6:50497806-50497405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:295-716
               
               
               Cow position:chr6:36525689-36526128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:295-751
               
               
               Cow position:chr6:6566259-6566729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 289

               
               
               Conread position:295-751
               
               
               Cow position:chr6:20561462-20560988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:295-753
               
               
               Cow position:chr6:701600-702081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr6:3889840-3889353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:295-753
               
               
               Cow position:chr6:8201379-8201863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 343

               
               
               Conread position:295-753
               
               
               Cow position:chr6:8761654-8761178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 294

               
               
               Conread position:295-753
               
               
               Cow position:chr6:15141528-15141054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr6:15280896-15280426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:295-753
               
               
               Cow position:chr6:17045711-17046181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr6:24238694-24239191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr6:29311142-29311617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:295-753
               
               
               Cow position:chr6:30275536-30275052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr6:35877070-35876592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:295-753
               
               
               Cow position:chr6:55544680-55544201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 267

               
               
               Conread position:296-753
               
               
               Cow position:chr6:65927586-65928062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:297-693
               
               
               Cow position:chr6:10640779-10641188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:297-751
               
               
               Cow position:chr6:34893360-34892882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 308

               
               
               Conread position:297-753
               
               
               Cow position:chr6:58409261-58408786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:299-709
               
               
               Cow position:chr6:40554934-40554516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:299-753
               
               
               Cow position:chr6:331814-331343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 185

               
               
               Conread position:300-638
               
               
               Cow position:chr6:1823596-1823245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:300-753
               
               
               Cow position:chr6:10558988-10558534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:300-753
               
               
               Cow position:chr6:17598624-17598153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:301-573
               
               
               Cow position:chr6:13978175-13978458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 241

               
               
               Conread position:301-753
               
               
               Cow position:chr6:1405584-1405112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 249

               
               
               Conread position:301-753
               
               
               Cow position:chr6:13103711-13104184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:301-753
               
               
               Cow position:chr6:26671207-26670732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 102

               
               
               Conread position:301-753
               
               
               Cow position:chr6:27169229-27169703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr6:28491861-28491388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr6:34127004-34127479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:301-753
               
               
               Cow position:chr6:43617369-43617841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 305

               
               
               Conread position:301-753
               
               
               Cow position:chr6:44028703-44029169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr6:44150904-44150430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr6:57870351-57869877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 264

               
               
               Conread position:305-749
               
               
               Cow position:chr6:13943572-13944031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 97

               
               
               Conread position:305-752
               
               
               Cow position:chr6:34203171-34203623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:305-753
               
               
               Cow position:chr6:38231932-38232403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:305-753
               
               
               Cow position:chr6:65841247-65841710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 223

               
               
               Conread position:305-753
               
               
               Cow position:chr6:68026440-68026918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 107

               
               
               Conread position:306-525
               
               
               Cow position:chr6:913290-913507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:306-638
               
               
               Cow position:chr6:65900252-65899916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:306-708
               
               
               Cow position:chr6:42927045-42927460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 110

               
               
               Conread position:306-709
               
               
               Cow position:chr6:42723262-42722849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:306-712
               
               
               Cow position:chr6:35433202-35433615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:306-748
               
               
               Cow position:chr6:66231473-66231914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:306-750
               
               
               Cow position:chr6:27468916-27469374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:306-753
               
               
               Cow position:chr6:2554365-2554832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 322

               
               
               Conread position:306-753
               
               
               Cow position:chr6:3278293-3277824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr6:5951579-5951120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 283

               
               
               Conread position:306-753
               
               
               Cow position:chr6:11278038-11277570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:306-753
               
               
               Cow position:chr6:12093197-12092766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 30

               
               
               Conread position:306-753
               
               
               Cow position:chr6:19453586-19454042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:306-753
               
               
               Cow position:chr6:21971331-21971812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr6:27530341-27529881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:306-753
               
               
               Cow position:chr6:59919622-59919159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 415

               
               
               Conread position:306-753
               
               
               Cow position:chr6:65822468-65822000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr6:65880524-65880993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:307-525
               
               
               Cow position:chr6:42564604-42564822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:307-692
               
               
               Cow position:chr6:7141811-7141410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:308-478
               
               
               Cow position:chr6:2401912-2402083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):165, 81

               
               
               Conread position:308-716
               
               
               Cow position:chr6:37115799-37116224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:308-751
               
               
               Cow position:chr6:3488742-3488274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:308-751
               
               
               Cow position:chr6:35420908-35420483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 11

               
               
               Conread position:308-753
               
               
               Cow position:chr6:7180007-7179570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 13

               
               
               Conread position:309-750
               
               
               Cow position:chr6:30478760-30479222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:309-753
               
               
               Cow position:chr6:2374369-2374826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:310-597
               
               
               Cow position:chr6:42360016-42359716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:310-753
               
               
               Cow position:chr6:6476790-6476363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:313-498
               
               
               Cow position:chr6:39907815-39908001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr6:65007508-65007690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:313-559
               
               
               Cow position:chr6:52804082-52804332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:315-753
               
               
               Cow position:chr6:16672052-16672506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:315-753
               
               
               Cow position:chr6:28063009-28063462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 102

               
               
               Conread position:316-591
               
               
               Cow position:chr6:65909095-65909382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:323-669
               
               
               Cow position:chr6:2885898-2886246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:331-707
               
               
               Cow position:chr6:62396853-62397232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):151, 15

               
               
               Conread position:331-716
               
               
               Cow position:chr6:33388520-33388915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:338-753
               
               
               Cow position:chr6:59741358-59740932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 77

               
               
               Conread position:353-731
               
               
               Cow position:chr6:37642105-37642500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:355-750
               
               
               Cow position:chr6:13317776-13317366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 52

               
               
               Conread position:359-701
               
               
               Cow position:chr6:28474422-28474771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:388-750
               
               
               Cow position:chr6:13276543-13276923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:392-753
               
               
               Cow position:chr6:16051631-16052006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:394-753
               
               
               Cow position:chr6:13846792-13847161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 184

               
               
               Conread position:396-753
               
               
               Cow position:chr6:33459612-33459989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 242

               
               
               Conread position:431-753
               
               
               Cow position:chr6:32330993-32330664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:439-753
               
               
               Cow position:chr6:43793965-43793643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:457-753
               
               
               Cow position:chr6:25214078-25214384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 41

               
               
               Conread position:515-753
               
               
               Cow position:chr6:7866871-7866625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:523-753
               
               
               Cow position:chr6:1412050-1411814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:535-753
               
               
               Cow position:chr6:3148905-3149130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:542-751
               
               
               Cow position:chr6:64715138-64715353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:547-753
               
               
               Cow position:chr6:39908441-39908653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-716
               
               
               Cow position:chr6:47043271-47043119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:590-750
               
               
               Cow position:chr6:40315014-40315176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:292-716
               
               
               Cow position:chr7:993969-994410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 198

               
               
               Conread position:294-710
               
               
               Cow position:chr7:32189733-32189338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:294-751
               
               
               Cow position:chr7:750660-751130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:294-753
               
               
               Cow position:chr7:19925076-19924607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:295-525
               
               
               Cow position:chr7:522108-521876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-620
               
               
               Cow position:chr7:51911615-51911274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:295-702
               
               
               Cow position:chr7:27144078-27144486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:295-716
               
               
               Cow position:chr7:64242200-64241773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:295-746
               
               
               Cow position:chr7:34485646-34486122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 235

               
               
               Conread position:295-753
               
               
               Cow position:chr7:1372913-1372436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr7:1400618-1400144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:295-753
               
               
               Cow position:chr7:1449231-1449700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:295-753
               
               
               Cow position:chr7:8145501-8145028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 251

               
               
               Conread position:295-753
               
               
               Cow position:chr7:14139860-14139385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr7:21127914-21127446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr7:27786368-27786839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:295-753
               
               
               Cow position:chr7:34148846-34149314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:295-753
               
               
               Cow position:chr7:45949411-45948934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr7:46902340-46901864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 297

               
               
               Conread position:295-753
               
               
               Cow position:chr7:54602586-54603067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr7:55538180-55537701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:295-753
               
               
               Cow position:chr7:67798588-67799067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 331

               
               
               Conread position:298-499
               
               
               Cow position:chr7:29469612-29469806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):187, 34

               
               
               Conread position:298-753
               
               
               Cow position:chr7:23835862-23836336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:298-753
               
               
               Cow position:chr7:36085072-36085552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 191

               
               
               Conread position:298-753
               
               
               Cow position:chr7:41870186-41869730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:299-753
               
               
               Cow position:chr7:11446297-11446772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:299-753
               
               
               Cow position:chr7:27102370-27101898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:300-499
               
               
               Cow position:chr7:67426162-67426361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:300-688
               
               
               Cow position:chr7:68436304-68435898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 319

               
               
               Conread position:300-716
               
               
               Cow position:chr7:21975993-21975562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 245

               
               
               Conread position:300-750
               
               
               Cow position:chr7:3154524-3154979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 153

               
               
               Conread position:300-752
               
               
               Cow position:chr7:27125912-27126371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 117

               
               
               Conread position:300-753
               
               
               Cow position:chr7:21235271-21234796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:300-753
               
               
               Cow position:chr7:35287815-35287344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 118

               
               
               Conread position:300-753
               
               
               Cow position:chr7:48633148-48633593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 103

               
               
               Conread position:300-753
               
               
               Cow position:chr7:67416783-67417260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:301-706
               
               
               Cow position:chr7:47374739-47375162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr7:17130-16656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr7:3234941-3234467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr7:6643130-6642661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:301-753
               
               
               Cow position:chr7:6648911-6648439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 262

               
               
               Conread position:301-753
               
               
               Cow position:chr7:23816224-23815754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:301-753
               
               
               Cow position:chr7:54515371-54514907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:301-753
               
               
               Cow position:chr7:61558955-61559429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-753
               
               
               Cow position:chr7:68858350-68857897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:303-752
               
               
               Cow position:chr7:63020599-63021063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:303-753
               
               
               Cow position:chr7:5662123-5662590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:303-753
               
               
               Cow position:chr7:6489563-6489103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 121

               
               
               Conread position:303-753
               
               
               Cow position:chr7:26025783-26026251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:304-753
               
               
               Cow position:chr7:11466988-11466523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 137

               
               
               Conread position:305-753
               
               
               Cow position:chr7:3301407-3300938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr7:51084371-51084818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):231, 96

               
               
               Conread position:306-472
               
               
               Cow position:chr7:35297847-35297683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:306-484
               
               
               Cow position:chr7:39108967-39108791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:306-693
               
               
               Cow position:chr7:20307040-20306655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:306-753
               
               
               Cow position:chr7:1357919-1357470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:306-753
               
               
               Cow position:chr7:21309958-21310421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:306-753
               
               
               Cow position:chr7:21985147-21985615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:306-753
               
               
               Cow position:chr7:24808721-24808251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr7:26890554-26891022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:306-753
               
               
               Cow position:chr7:38536274-38536724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 17

               
               
               Conread position:307-691
               
               
               Cow position:chr7:26883879-26884275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:307-709
               
               
               Cow position:chr7:102853-102436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 146

               
               
               Conread position:307-709
               
               
               Cow position:chr7:24056041-24056447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):170, 25

               
               
               Conread position:307-753
               
               
               Cow position:chr7:59136179-59136623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:308-753
               
               
               Cow position:chr7:446885-446415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:311-753
               
               
               Cow position:chr7:20799676-20799226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:311-753
               
               
               Cow position:chr7:51013716-51014168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 101

               
               
               Conread position:312-746
               
               
               Cow position:chr7:25439283-25439715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:313-477
               
               
               Cow position:chr7:38396983-38397141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:313-686
               
               
               Cow position:chr7:68778623-68778231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 277

               
               
               Conread position:313-753
               
               
               Cow position:chr7:1611445-1610995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 86

               
               
               Conread position:314-525
               
               
               Cow position:chr7:39791493-39791708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:323-695
               
               
               Cow position:chr7:61349798-61349429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:324-709
               
               
               Cow position:chr7:53990511-53990896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:324-753
               
               
               Cow position:chr7:33406477-33406026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 422

               
               
               Conread position:331-753
               
               
               Cow position:chr7:20555492-20555930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:331-753
               
               
               Cow position:chr7:39556314-39555880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):133, 64

               
               
               Conread position:333-753
               
               
               Cow position:chr7:10431649-10431202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:346-753
               
               
               Cow position:chr7:26893538-26893966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:350-749
               
               
               Cow position:chr7:20528882-20528463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:376-525
               
               
               Cow position:chr7:21241974-21241828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:376-749
               
               
               Cow position:chr7:7257026-7257407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:376-751
               
               
               Cow position:chr7:52120262-52119871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:377-753
               
               
               Cow position:chr7:41489938-41490327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:383-753
               
               
               Cow position:chr7:21319981-21320372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:395-753
               
               
               Cow position:chr7:47050540-47050899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:396-753
               
               
               Cow position:chr7:13537745-13537367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:397-750
               
               
               Cow position:chr7:68907686-68908040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:398-716
               
               
               Cow position:chr7:65496956-65496640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):159, 210

               
               
               Conread position:400-749
               
               
               Cow position:chr7:62442908-62442534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:402-656
               
               
               Cow position:chr7:545058-545323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:404-753
               
               
               Cow position:chr7:68479013-68479383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:408-753
               
               
               Cow position:chr7:26925185-26924823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:427-753
               
               
               Cow position:chr7:29370709-29370367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:435-716
               
               
               Cow position:chr7:68328559-68328847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:454-753
               
               
               Cow position:chr7:35297374-35297055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr7:33878393-33878155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:518-753
               
               
               Cow position:chr7:68778173-68777937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:537-750
               
               
               Cow position:chr7:39108236-39108027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:542-753
               
               
               Cow position:chr7:39791752-39791971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:551-716
               
               
               Cow position:chr7:30302055-30302221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:599-753
               
               
               Cow position:chr7:60463205-60463365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:270-753
               
               
               Cow position:chr8:44693191-44693687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 273

               
               
               Conread position:294-753
               
               
               Cow position:chr8:39196292-39195813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 365

               
               
               Conread position:295-494
               
               
               Cow position:chr8:61198191-61197991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-518
               
               
               Cow position:chr8:29440903-29440678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-520
               
               
               Cow position:chr8:19173844-19173619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:295-525
               
               
               Cow position:chr8:14592263-14592039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-525
               
               
               Cow position:chr8:60060128-60060359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:295-598
               
               
               Cow position:chr8:19328879-19329198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-600
               
               
               Cow position:chr8:45795819-45795499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:295-716
               
               
               Cow position:chr8:8402275-8401837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:295-746
               
               
               Cow position:chr8:32319623-32319153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-746
               
               
               Cow position:chr8:36636618-36636147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 272

               
               
               Conread position:295-746
               
               
               Cow position:chr8:36637733-36637262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 272

               
               
               Conread position:295-751
               
               
               Cow position:chr8:2171455-2170978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:295-753
               
               
               Cow position:chr8:4686319-4686796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:295-753
               
               
               Cow position:chr8:8229860-8229378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr8:10743700-10743227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 62

               
               
               Conread position:295-753
               
               
               Cow position:chr8:11801159-11801637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 254

               
               
               Conread position:295-753
               
               
               Cow position:chr8:13735580-13736048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 18

               
               
               Conread position:295-753
               
               
               Cow position:chr8:17310942-17311421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr8:19050411-19050879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 186

               
               
               Conread position:295-753
               
               
               Cow position:chr8:23770564-23771038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr8:38390292-38390771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:295-753
               
               
               Cow position:chr8:44244651-44244170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr8:49214353-49214830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:296-673
               
               
               Cow position:chr8:44077092-44076724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:297-565
               
               
               Cow position:chr8:12664084-12663826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):251, 26

               
               
               Conread position:297-751
               
               
               Cow position:chr8:3857085-3856613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 47

               
               
               Conread position:297-753
               
               
               Cow position:chr8:1318976-1319448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 129

               
               
               Conread position:297-753
               
               
               Cow position:chr8:14929065-14928590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 65

               
               
               Conread position:297-753
               
               
               Cow position:chr8:25407375-25407848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:297-753
               
               
               Cow position:chr8:47662399-47661922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 108

               
               
               Conread position:298-751
               
               
               Cow position:chr8:59262967-59262492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:298-753
               
               
               Cow position:chr8:23766457-23765995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:298-753
               
               
               Cow position:chr8:27983869-27983392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:299-588
               
               
               Cow position:chr8:46945197-46944897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:299-753
               
               
               Cow position:chr8:27578340-27578805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:300-499
               
               
               Cow position:chr8:23216685-23216870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:300-753
               
               
               Cow position:chr8:42483854-42484315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 319

               
               
               Conread position:300-753
               
               
               Cow position:chr8:45317192-45316722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:300-753
               
               
               Cow position:chr8:50289223-50288748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 268

               
               
               Conread position:300-753
               
               
               Cow position:chr8:50993719-50994191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:301-439
               
               
               Cow position:chr8:8595963-8595824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:301-479
               
               
               Cow position:chr8:27925056-27925236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:301-498
               
               
               Cow position:chr8:32439511-32439313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:301-525
               
               
               Cow position:chr8:26006832-26006611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:301-525
               
               
               Cow position:chr8:37931226-37931450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 200

               
               
               Conread position:301-597
               
               
               Cow position:chr8:12504931-12505239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:301-753
               
               
               Cow position:chr8:1154378-1153904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr8:9274952-9275414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr8:9735178-9735650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr8:11821247-11821716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 251

               
               
               Conread position:303-716
               
               
               Cow position:chr8:9540557-9540131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:303-753
               
               
               Cow position:chr8:53427261-53427724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 137

               
               
               Conread position:305-753
               
               
               Cow position:chr8:22572360-22571892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 322

               
               
               Conread position:305-753
               
               
               Cow position:chr8:24916402-24915934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 331

               
               
               Conread position:305-753
               
               
               Cow position:chr8:47069872-47069402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:306-750
               
               
               Cow position:chr8:33429851-33430325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 300

               
               
               Conread position:306-750
               
               
               Cow position:chr8:47884962-47885434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:306-753
               
               
               Cow position:chr8:25522333-25522804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr8:32930447-32930913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:306-753
               
               
               Cow position:chr8:33588313-33588777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 370

               
               
               Conread position:306-753
               
               
               Cow position:chr8:46091924-46091466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:307-525
               
               
               Cow position:chr8:8904577-8904368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:307-751
               
               
               Cow position:chr8:8316691-8316241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:307-753
               
               
               Cow position:chr8:5016118-5016584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:307-753
               
               
               Cow position:chr8:10748322-10748778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 16

               
               
               Conread position:307-753
               
               
               Cow position:chr8:46222389-46221929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:308-716
               
               
               Cow position:chr8:12716300-12716700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):218, 30

               
               
               Conread position:309-753
               
               
               Cow position:chr8:11970624-11970188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:311-753
               
               
               Cow position:chr8:8910169-8910624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:312-750
               
               
               Cow position:chr8:38607562-38607124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 178

               
               
               Conread position:313-455
               
               
               Cow position:chr8:6065780-6065637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-498
               
               
               Cow position:chr8:37657324-37657142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 90

               
               
               Conread position:313-749
               
               
               Cow position:chr8:32632080-32631628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 128

               
               
               Conread position:313-750
               
               
               Cow position:chr8:47074211-47074668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:313-751
               
               
               Cow position:chr8:47670401-47670861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:313-753
               
               
               Cow position:chr8:2885688-2886154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:313-753
               
               
               Cow position:chr8:8518637-8518180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 199

               
               
               Conread position:313-753
               
               
               Cow position:chr8:8557193-8556745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 89

               
               
               Conread position:313-753
               
               
               Cow position:chr8:45161416-45160971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:313-753
               
               
               Cow position:chr8:45448395-45448860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 101

               
               
               Conread position:324-752
               
               
               Cow position:chr8:61035408-61034966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:342-742
               
               
               Cow position:chr8:15688179-15687766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:345-752
               
               
               Cow position:chr8:12544035-12543644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:346-693
               
               
               Cow position:chr8:30490761-30490401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 243

               
               
               Conread position:346-752
               
               
               Cow position:chr8:45189069-45189486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 203

               
               
               Conread position:346-753
               
               
               Cow position:chr8:44036791-44036376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 30

               
               
               Conread position:350-753
               
               
               Cow position:chr8:3784690-3785113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:358-584
               
               
               Cow position:chr8:36292158-36292397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:376-709
               
               
               Cow position:chr8:11055881-11056217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:378-750
               
               
               Cow position:chr8:24420519-24420138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 319

               
               
               Conread position:392-656
               
               
               Cow position:chr8:29581969-29582244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:396-748
               
               
               Cow position:chr8:13808628-13808999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 184

               
               
               Conread position:400-753
               
               
               Cow position:chr8:25776635-25776270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:402-753
               
               
               Cow position:chr8:11831729-11832103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:406-753
               
               
               Cow position:chr8:50934158-50934504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:410-753
               
               
               Cow position:chr8:45693585-45693226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):101, 286

               
               
               Conread position:425-748
               
               
               Cow position:chr8:11761358-11761677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):152, 63

               
               
               Conread position:428-750
               
               
               Cow position:chr8:42161662-42161326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):93, 152

               
               
               Conread position:429-753
               
               
               Cow position:chr8:61067180-61066843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):87, 150

               
               
               Conread position:431-751
               
               
               Cow position:chr8:42759025-42759345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):227, 96

               
               
               Conread position:438-709
               
               
               Cow position:chr8:1349176-1348890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:517-750
               
               
               Cow position:chr8:21158657-21158418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr8:6065609-6065365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:517-753
               
               
               Cow position:chr8:27925484-27925718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:523-753
               
               
               Cow position:chr8:60060547-60060785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:530-749
               
               
               Cow position:chr8:26005426-26005199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 206

               
               
               Conread position:543-751
               
               
               Cow position:chr8:25542687-25542903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:568-727
               
               
               Cow position:chr8:9264036-9263870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:581-753
               
               
               Cow position:chr8:47491608-47491428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:582-753
               
               
               Cow position:chr8:42467551-42467728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:590-753
               
               
               Cow position:chr8:19329970-19330139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:596-753
               
               
               Cow position:chr8:12449188-12449351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:290-753
               
               
               Cow position:chr9:31020380-31020877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:293-716
               
               
               Cow position:chr9:35657540-35657965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:295-468
               
               
               Cow position:chr9:51183132-51182960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:295-484
               
               
               Cow position:chr9:18510148-18509957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-616
               
               
               Cow position:chr9:22650731-22651057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-716
               
               
               Cow position:chr9:3567277-3566838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 314

               
               
               Conread position:295-728
               
               
               Cow position:chr9:2199687-2200137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-734
               
               
               Cow position:chr9:6830968-6830525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-743
               
               
               Cow position:chr9:29028653-29028183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-746
               
               
               Cow position:chr9:1996344-1995865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 418

               
               
               Conread position:295-751
               
               
               Cow position:chr9:10321398-10321863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 255

               
               
               Conread position:295-751
               
               
               Cow position:chr9:59174581-59174107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 313

               
               
               Conread position:295-753
               
               
               Cow position:chr9:2170634-2171113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:295-753
               
               
               Cow position:chr9:3548594-3548117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr9:4532067-4532546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 297

               
               
               Conread position:295-753
               
               
               Cow position:chr9:5003589-5004054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:295-753
               
               
               Cow position:chr9:9012684-9013162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr9:16175344-16175822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:295-753
               
               
               Cow position:chr9:28021123-28021606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:295-753
               
               
               Cow position:chr9:29629171-29628691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr9:30671946-30672423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 270

               
               
               Conread position:295-753
               
               
               Cow position:chr9:31807116-31807589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:295-753
               
               
               Cow position:chr9:37163232-37162751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chr9:42568449-42568927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chr9:59456023-59455543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 255

               
               
               Conread position:295-753
               
               
               Cow position:chr9:59535675-59536150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:295-753
               
               
               Cow position:chr9:60278446-60277967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:296-673
               
               
               Cow position:chr9:7002131-7002524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 196

               
               
               Conread position:297-440
               
               
               Cow position:chr9:12401822-12401967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:297-701
               
               
               Cow position:chr9:37129960-37129538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:297-708
               
               
               Cow position:chr9:131616-131194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:297-753
               
               
               Cow position:chr9:1076621-1076142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:298-477
               
               
               Cow position:chr9:31776526-31776707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:298-570
               
               
               Cow position:chr9:1294234-1293951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:298-709
               
               
               Cow position:chr9:222967-222544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:298-753
               
               
               Cow position:chr9:10314962-10315421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:299-711
               
               
               Cow position:chr9:870450-870039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):203, 33

               
               
               Conread position:299-753
               
               
               Cow position:chr9:15072095-15072569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 311

               
               
               Conread position:300-592
               
               
               Cow position:chr9:1979528-1979827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):226, 110

               
               
               Conread position:300-716
               
               
               Cow position:chr9:6757152-6757587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):58, 128

               
               
               Conread position:300-753
               
               
               Cow position:chr9:792925-792459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:301-455
               
               
               Cow position:chr9:33834691-33834535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-750
               
               
               Cow position:chr9:59443440-59443903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 42

               
               
               Conread position:301-753
               
               
               Cow position:chr9:163908-163448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:301-753
               
               
               Cow position:chr9:1252385-1251920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 306

               
               
               Conread position:301-753
               
               
               Cow position:chr9:4672189-4672663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr9:16267942-16268427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr9:25755621-25755168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:301-753
               
               
               Cow position:chr9:28677557-28678028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 317

               
               
               Conread position:301-753
               
               
               Cow position:chr9:31194585-31194111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 264

               
               
               Conread position:301-753
               
               
               Cow position:chr9:36724083-36724557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chr9:46626217-46625744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:303-730
               
               
               Cow position:chr9:2052039-2052471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:305-498
               
               
               Cow position:chr9:34107131-34106937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 141

               
               
               Conread position:305-588
               
               
               Cow position:chr9:2697348-2697047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 265

               
               
               Conread position:305-600
               
               
               Cow position:chr9:13219907-13220221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:305-703
               
               
               Cow position:chr9:17064806-17064395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:305-752
               
               
               Cow position:chr9:4984362-4984821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:305-753
               
               
               Cow position:chr9:7062520-7062037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr9:25483459-25483929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:305-753
               
               
               Cow position:chr9:27933681-27934146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 395

               
               
               Conread position:306-616
               
               
               Cow position:chr9:26712730-26712415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:306-750
               
               
               Cow position:chr9:2500708-2500242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr9:781214-780749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr9:27034295-27034756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 152

               
               
               Conread position:306-753
               
               
               Cow position:chr9:34243011-34242542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-753
               
               
               Cow position:chr9:37971620-37971155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 310

               
               
               Conread position:306-753
               
               
               Cow position:chr9:45872941-45873404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:306-753
               
               
               Cow position:chr9:47001793-47002244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:306-753
               
               
               Cow position:chr9:59483082-59482617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:307-472
               
               
               Cow position:chr9:60651875-60651709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:308-753
               
               
               Cow position:chr9:52570256-52570706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:309-455
               
               
               Cow position:chr9:50789157-50789304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:309-746
               
               
               Cow position:chr9:6051450-6051001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:309-753
               
               
               Cow position:chr9:42309273-42309738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 156

               
               
               Conread position:310-503
               
               
               Cow position:chr9:829966-829774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:310-691
               
               
               Cow position:chr9:831840-831444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 105

               
               
               Conread position:313-499
               
               
               Cow position:chr9:2488376-2488189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:313-525
               
               
               Cow position:chr9:32968337-32968549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:313-753
               
               
               Cow position:chr9:28626433-28625985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 17

               
               
               Conread position:314-622
               
               
               Cow position:chr9:54360203-54360521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:314-709
               
               
               Cow position:chr9:2185560-2185969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 51

               
               
               Conread position:324-654
               
               
               Cow position:chr9:20310125-20309788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 117

               
               
               Conread position:337-750
               
               
               Cow position:chr9:64118448-64118879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 92

               
               
               Conread position:342-753
               
               
               Cow position:chr9:25023677-25023246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:345-658
               
               
               Cow position:chr9:8969296-8968968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:345-753
               
               
               Cow position:chr9:3155659-3156078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 202

               
               
               Conread position:345-753
               
               
               Cow position:chr9:3356345-3355937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 39

               
               
               Conread position:346-753
               
               
               Cow position:chr9:9055438-9055010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:356-753
               
               
               Cow position:chr9:39992558-39992974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:365-707
               
               
               Cow position:chr9:64158770-64159121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 276

               
               
               Conread position:385-751
               
               
               Cow position:chr9:6111307-6110943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):147, 38

               
               
               Conread position:388-753
               
               
               Cow position:chr9:3542480-3542862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 200

               
               
               Conread position:399-716
               
               
               Cow position:chr9:59425369-59425690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:414-716
               
               
               Cow position:chr9:37064100-37063782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:416-753
               
               
               Cow position:chr9:30826379-30826737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:439-753
               
               
               Cow position:chr9:34992105-34992448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:444-749
               
               
               Cow position:chr9:3006519-3006194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:478-750
               
               
               Cow position:chr9:2001630-2001356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:519-753
               
               
               Cow position:chr9:18836823-18837064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:537-742
               
               
               Cow position:chr9:13477376-13477175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:537-751
               
               
               Cow position:chr9:1979811-1980032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:542-751
               
               
               Cow position:chr9:3586205-3586423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:547-709
               
               
               Cow position:chr9:2064834-2064669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:548-752
               
               
               Cow position:chr9:43662810-43663007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:548-753
               
               
               Cow position:chr9:51182348-51182139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:553-753
               
               
               Cow position:chr9:32968815-32969024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:556-691
               
               
               Cow position:chr9:829372-829233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:570-753
               
               
               Cow position:chr9:34719837-34720028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:595-753
               
               
               Cow position:chr9:40191785-40191621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:290-634
               
               
               Cow position:chrX:8963579-8963224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:294-624
               
               
               Cow position:chrX:39717280-39717624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 128

               
               
               Conread position:294-727
               
               
               Cow position:chrX:31192281-31191873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):288, 69

               
               
               Conread position:294-751
               
               
               Cow position:chrX:26767712-26767239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:295-476
               
               
               Cow position:chrX:25187141-25187324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:295-520
               
               
               Cow position:chrX:38145542-38145768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:295-657
               
               
               Cow position:chrX:31198083-31198467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-711
               
               
               Cow position:chrX:15309768-15309344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:295-746
               
               
               Cow position:chrX:2483158-2482684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-751
               
               
               Cow position:chrX:23392120-23391640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-751
               
               
               Cow position:chrX:26759109-26758646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 297

               
               
               Conread position:295-753
               
               
               Cow position:chrX:319953-320429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 333

               
               
               Conread position:295-753
               
               
               Cow position:chrX:1546416-1546896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chrX:12478203-12478682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-753
               
               
               Cow position:chrX:15127761-15127281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 405

               
               
               Conread position:295-753
               
               
               Cow position:chrX:15598411-15598891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chrX:16698783-16699261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:295-753
               
               
               Cow position:chrX:18955033-18954561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-753
               
               
               Cow position:chrX:21222409-21222889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 343

               
               
               Conread position:295-753
               
               
               Cow position:chrX:21829008-21829485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:295-753
               
               
               Cow position:chrX:23456089-23455617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 290

               
               
               Conread position:295-753
               
               
               Cow position:chrX:27494186-27494671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:295-753
               
               
               Cow position:chrX:28634930-28634455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 118

               
               
               Conread position:295-753
               
               
               Cow position:chrX:30232622-30232147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 293

               
               
               Conread position:295-753
               
               
               Cow position:chrX:30710836-30711316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:297-750
               
               
               Cow position:chrX:2537283-2536822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:297-752
               
               
               Cow position:chrX:31080017-31080478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):8, 157

               
               
               Conread position:297-753
               
               
               Cow position:chrX:982149-982599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 173

               
               
               Conread position:297-753
               
               
               Cow position:chrX:13077208-13076736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:297-753
               
               
               Cow position:chrX:13097782-13097310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:297-753
               
               
               Cow position:chrX:20426435-20426890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:297-753
               
               
               Cow position:chrX:23018817-23019286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 103

               
               
               Conread position:297-753
               
               
               Cow position:chrX:26504680-26505145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 64

               
               
               Conread position:298-464
               
               
               Cow position:chrX:3376738-3376571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:298-753
               
               
               Cow position:chrX:20698790-20698339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:299-503
               
               
               Cow position:chrX:26628831-26628629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:299-750
               
               
               Cow position:chrX:24484921-24484454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:299-753
               
               
               Cow position:chrX:18532492-18532951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 126

               
               
               Conread position:299-753
               
               
               Cow position:chrX:22526116-22525643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:300-500
               
               
               Cow position:chrX:21586524-21586723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:300-716
               
               
               Cow position:chrX:17668793-17668370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 36

               
               
               Conread position:300-753
               
               
               Cow position:chrX:11668948-11668481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 112

               
               
               Conread position:300-753
               
               
               Cow position:chrX:20803627-20804087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:300-753
               
               
               Cow position:chrX:21289997-21289530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 61

               
               
               Conread position:300-753
               
               
               Cow position:chrX:21602376-21602840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 154

               
               
               Conread position:300-753
               
               
               Cow position:chrX:21633094-21632626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:300-753
               
               
               Cow position:chrX:22777803-22778273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 120

               
               
               Conread position:300-753
               
               
               Cow position:chrX:24122430-24121959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 264

               
               
               Conread position:300-753
               
               
               Cow position:chrX:24275159-24275631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 268

               
               
               Conread position:300-753
               
               
               Cow position:chrX:30174173-30173710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:301-473
               
               
               Cow position:chrX:29174109-29173939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):121, 89

               
               
               Conread position:301-476
               
               
               Cow position:chrX:22610798-22610973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:301-477
               
               
               Cow position:chrX:28604312-28604136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:301-715
               
               
               Cow position:chrX:30666451-30666020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 314

               
               
               Conread position:301-716
               
               
               Cow position:chrX:8479193-8479621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:301-746
               
               
               Cow position:chrX:12280768-12280315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 280

               
               
               Conread position:301-753
               
               
               Cow position:chrX:2603535-2604010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:5284238-5283774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:301-753
               
               
               Cow position:chrX:5395475-5395001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:301-753
               
               
               Cow position:chrX:7481094-7481564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:301-753
               
               
               Cow position:chrX:8454243-8454713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:8586582-8587055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:301-753
               
               
               Cow position:chrX:9007831-9008299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:301-753
               
               
               Cow position:chrX:9193157-9192683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:12655266-12654799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:301-753
               
               
               Cow position:chrX:16363635-16363163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:17479035-17478561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:301-753
               
               
               Cow position:chrX:21339890-21340361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 140

               
               
               Conread position:301-753
               
               
               Cow position:chrX:22619826-22619348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:23046633-23047107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 184

               
               
               Conread position:301-753
               
               
               Cow position:chrX:27426829-27426355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-753
               
               
               Cow position:chrX:39521394-39521868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-658
               
               
               Cow position:chrX:12341687-12342053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 187

               
               
               Conread position:303-710
               
               
               Cow position:chrX:17614905-17614499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:303-750
               
               
               Cow position:chrX:22813891-22814340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:303-753
               
               
               Cow position:chrX:13007143-13006664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:304-750
               
               
               Cow position:chrX:21489724-21490187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:304-753
               
               
               Cow position:chrX:5862889-5863359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:305-745
               
               
               Cow position:chrX:7093095-7093551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:305-749
               
               
               Cow position:chrX:20316561-20316098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:305-749
               
               
               Cow position:chrX:24088895-24089359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:305-750
               
               
               Cow position:chrX:29951073-29950615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 99

               
               
               Conread position:305-751
               
               
               Cow position:chrX:16236825-16237268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 57

               
               
               Conread position:305-753
               
               
               Cow position:chrX:2860306-2859840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 115

               
               
               Conread position:305-753
               
               
               Cow position:chrX:3085409-3084941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 389

               
               
               Conread position:305-753
               
               
               Cow position:chrX:5299710-5299262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 89

               
               
               Conread position:305-753
               
               
               Cow position:chrX:6873580-6873110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:305-753
               
               
               Cow position:chrX:7029683-7030149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-753
               
               
               Cow position:chrX:8670087-8670553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:305-753
               
               
               Cow position:chrX:11465504-11465041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:305-753
               
               
               Cow position:chrX:15179936-15179470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 96

               
               
               Conread position:305-753
               
               
               Cow position:chrX:26400974-26400506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 41

               
               
               Conread position:305-753
               
               
               Cow position:chrX:29794631-29794153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 253

               
               
               Conread position:305-753
               
               
               Cow position:chrX:30056165-30056606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:305-753
               
               
               Cow position:chrX:31187741-31187284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 201

               
               
               Conread position:306-444
               
               
               Cow position:chrX:24276013-24275873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:306-520
               
               
               Cow position:chrX:28522203-28521989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:306-525
               
               
               Cow position:chrX:25332587-25332802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:306-525
               
               
               Cow position:chrX:41151720-41151940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:306-584
               
               
               Cow position:chrX:29092997-29093278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 256

               
               
               Conread position:306-597
               
               
               Cow position:chrX:24325653-24325346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-701
               
               
               Cow position:chrX:6909842-6909425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:306-709
               
               
               Cow position:chrX:27990279-27989874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:306-726
               
               
               Cow position:chrX:7533592-7534005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:306-749
               
               
               Cow position:chrX:24136902-24136442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:306-753
               
               
               Cow position:chrX:13398621-13398159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:306-753
               
               
               Cow position:chrX:22583220-22582739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:306-753
               
               
               Cow position:chrX:29854071-29853605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 300

               
               
               Conread position:306-753
               
               
               Cow position:chrX:32466747-32467213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:306-753
               
               
               Cow position:chrX:37848505-37848975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:307-511
               
               
               Cow position:chrX:12182694-12182899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:307-675
               
               
               Cow position:chrX:4795411-4795806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:307-753
               
               
               Cow position:chrX:10532065-10531597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:308-749
               
               
               Cow position:chrX:30142896-30142437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 331

               
               
               Conread position:308-750
               
               
               Cow position:chrX:30179497-30179037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 343

               
               
               Conread position:308-753
               
               
               Cow position:chrX:970259-970728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:309-748
               
               
               Cow position:chrX:19185451-19185012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 14

               
               
               Conread position:309-753
               
               
               Cow position:chrX:1833331-1833789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 96

               
               
               Conread position:309-753
               
               
               Cow position:chrX:22487684-22488142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 276

               
               
               Conread position:309-753
               
               
               Cow position:chrX:30184392-30183933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:310-526
               
               
               Cow position:chrX:28651625-28651414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:310-749
               
               
               Cow position:chrX:29873060-29872600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:310-753
               
               
               Cow position:chrX:32095461-32095005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 95

               
               
               Conread position:311-564
               
               
               Cow position:chrX:5834666-5834406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):194, 94

               
               
               Conread position:312-745
               
               
               Cow position:chrX:7751398-7751853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:312-753
               
               
               Cow position:chrX:12804360-12803903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 100

               
               
               Conread position:313-484
               
               
               Cow position:chrX:11534987-11535153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:313-614
               
               
               Cow position:chrX:30046614-30046300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:313-749
               
               
               Cow position:chrX:28759125-28758684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 317

               
               
               Conread position:313-753
               
               
               Cow position:chrX:2101362-2101820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:313-753
               
               
               Cow position:chrX:5324215-5323762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 10

               
               
               Conread position:313-753
               
               
               Cow position:chrX:12289441-12288975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chrX:14787372-14786911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chrX:16275185-16275638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:313-753
               
               
               Cow position:chrX:18218897-18219358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chrX:26527476-26527937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:313-753
               
               
               Cow position:chrX:40057561-40057104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:315-753
               
               
               Cow position:chrX:2142806-2143243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:319-753
               
               
               Cow position:chrX:2563351-2562896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:324-484
               
               
               Cow position:chrX:28553587-28553744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:324-752
               
               
               Cow position:chrX:12998049-12997618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:333-667
               
               
               Cow position:chrX:37757301-37757644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):149, 61

               
               
               Conread position:333-753
               
               
               Cow position:chrX:21270661-21270235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):208, 95

               
               
               Conread position:342-658
               
               
               Cow position:chrX:6276061-6275733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 74

               
               
               Conread position:342-709
               
               
               Cow position:chrX:26428496-26428132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):237, 63

               
               
               Conread position:345-753
               
               
               Cow position:chrX:21794632-21795056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:345-753
               
               
               Cow position:chrX:28562678-28562253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 67

               
               
               Conread position:346-753
               
               
               Cow position:chrX:6283546-6283131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:352-753
               
               
               Cow position:chrX:35017356-35017769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:353-716
               
               
               Cow position:chrX:17632282-17631904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:372-753
               
               
               Cow position:chrX:35529420-35529821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:382-716
               
               
               Cow position:chrX:28875834-28875503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):149, 78

               
               
               Conread position:393-626
               
               
               Cow position:chrX:16935975-16935727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:396-753
               
               
               Cow position:chrX:18660198-18659822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:396-753
               
               
               Cow position:chrX:23041532-23041162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:397-753
               
               
               Cow position:chrX:2593365-2593017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:400-712
               
               
               Cow position:chrX:24114577-24114271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:400-753
               
               
               Cow position:chrX:5839925-5840293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:400-753
               
               
               Cow position:chrX:29285022-29285378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 137

               
               
               Conread position:402-753
               
               
               Cow position:chrX:9124948-9125320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:403-752
               
               
               Cow position:chrX:30369408-30369058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):129, 9

               
               
               Conread position:405-753
               
               
               Cow position:chrX:21304946-21304565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:422-753
               
               
               Cow position:chrX:12670248-12669903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:422-753
               
               
               Cow position:chrX:41411410-41411060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:452-749
               
               
               Cow position:chrX:39564289-39563974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:517-729
               
               
               Cow position:chrX:21586884-21587102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:517-753
               
               
               Cow position:chrX:26628315-26628071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:517-753
               
               
               Cow position:chrX:28603738-28603497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):141, 85

               
               
               Conread position:517-753
               
               
               Cow position:chrX:29947424-29947668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:517-753
               
               
               Cow position:chrX:37811879-37812123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:519-753
               
               
               Cow position:chrX:12973512-12973267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:520-753
               
               
               Cow position:chrX:28584700-28584941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:525-753
               
               
               Cow position:chrX:35390368-35390136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:530-753
               
               
               Cow position:chrX:1943313-1943083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:530-753
               
               
               Cow position:chrX:40247578-40247353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:537-753
               
               
               Cow position:chrX:16461414-16461638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:543-753
               
               
               Cow position:chrX:38146048-38146266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:549-753
               
               
               Cow position:chrX:29757908-29758122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:552-753
               
               
               Cow position:chrX:5834212-5834003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:556-750
               
               
               Cow position:chrX:44386229-44386434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:581-753
               
               
               Cow position:chrX:29998576-29998752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:582-753
               
               
               Cow position:chrX:38576039-38575858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:585-753
               
               
               Cow position:chrX:11663718-11663544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:593-748
               
               
               Cow position:chrX:31724821-31724982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:607-753
               
               
               Cow position:chrX:39719246-39719399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0
Conread position:	289-525
Cow position:	chr1:82652358-82652595 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	167
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	30, 174
Conread position:	294-749
Cow position:	chr1:88635105-88635573 (view UCSC Genome Browser custom track)
Alignm length:	476
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	222, 37
Conread position:	294-752
Cow position:	chr1:87244526-87245016 (view UCSC Genome Browser custom track)
Alignm length:	496
Alignm identity:	353
Alignm E-value:	0
Alignm gaps (pig, cow):	211, 121
Conread position:	294-753
Cow position:	chr1:99349291-99348831 (view UCSC Genome Browser custom track)
Alignm length:	468
Alignm identity:	337
Alignm E-value:	0
Alignm gaps (pig, cow):	128, 208
Conread position:	295-520
Cow position:	chr1:5501702-5501929 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	172
Alignm E-value:	8.96831e-44
Alignm gaps (pig, cow):	19, 0
Conread position:	295-534
Cow position:	chr1:88130485-88130724 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	175
Alignm E-value:	5e-38
Alignm gaps (pig, cow):	19, 228
Conread position:	295-648
Cow position:	chr1:17942085-17941715 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	256
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 0
Conread position:	295-657
Cow position:	chr1:69922736-69922361 (view UCSC Genome Browser custom track)
Alignm length:	376
Alignm identity:	266
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 0
Conread position:	295-712
Cow position:	chr1:3386279-3385845 (view UCSC Genome Browser custom track)
Alignm length:	436
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 105
Conread position:	295-716
Cow position:	chr1:55775881-55776316 (view UCSC Genome Browser custom track)
Alignm length:	440
Alignm identity:	319
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 164
Conread position:	295-750
Cow position:	chr1:102435301-102434835 (view UCSC Genome Browser custom track)
Alignm length:	467
Alignm identity:	345
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 0
Conread position:	295-751
Cow position:	chr1:58335564-58336039 (view UCSC Genome Browser custom track)
Alignm length:	478
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	130, 342
Conread position:	295-753
Cow position:	chr1:13645461-13645918 (view UCSC Genome Browser custom track)
Alignm length:	468
Alignm identity:	322
Alignm E-value:	0
Alignm gaps (pig, cow):	127, 36
Conread position:	297-753
Cow position:	chr1:59933284-59933746 (view UCSC Genome Browser custom track)
Alignm length:	476
Alignm identity:	316
Alignm E-value:	5e-39
Alignm gaps (pig, cow):	41, 33
Conread position:	298-525
Cow position:	chr1:43019855-43020082 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	169
Alignm E-value:	5e-38
Alignm gaps (pig, cow):	21, 157
Conread position:	298-666
Cow position:	chr1:59674222-59674594 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	261
Alignm E-value:	0
Alignm gaps (pig, cow):	127, 24
Conread position:	298-678
Cow position:	chr1:28801695-28801291 (view UCSC Genome Browser custom track)
Alignm length:	405
Alignm identity:	294
Alignm E-value:	0
Alignm gaps (pig, cow):	120, 0
Conread position:	298-751
Cow position:	chr1:52359545-52359073 (view UCSC Genome Browser custom track)
Alignm length:	475
Alignm identity:	335
Alignm E-value:	0
Alignm gaps (pig, cow):	55, 22
Conread position:	298-753
Cow position:	chr1:1461597-1461125 (view UCSC Genome Browser custom track)
Alignm length:	478
Alignm identity:	349
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 319
Conread position:	299-453
Cow position:	chr1:28722523-28722679 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	125
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	16, 0