Non-Coding RNA Search

Cow genome map


           Conread name:
           Lym2-sn16_A03.f
        

               Conread position:
               1-421
               

               Cow position:
               chr1:88267502-88267917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 53
               

               Conread position:
               1-444
               

               Cow position:
               chr1:4276239-4275784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 63
               

               Conread position:
               1-460
               

               Cow position:
               chr1:6771175-6770700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 191
               

               Conread position:
               1-465
               

               Cow position:
               chr1:21995394-21995876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-465
               

               Cow position:
               chr1:29365023-29364543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 59
               

               Conread position:
               1-465
               

               Cow position:
               chr1:40057731-40057249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               1-465
               

               Cow position:
               chr1:51876192-51876659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 20
               

               Conread position:
               1-465
               

               Cow position:
               chr1:73762978-73763462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 87
               

               Conread position:
               1-465
               

               Cow position:
               chr1:86545521-86546002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 206
               

               Conread position:
               1-470
               

               Cow position:
               chr1:102432405-102432894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               2-337
               

               Cow position:
               chr1:76702037-76702376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 53
               

               Conread position:
               2-364
               

               Cow position:
               chr1:57695022-57695411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               21, 98
               

               Conread position:
               2-364
               

               Cow position:
               chr1:69246449-69246082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               2-458
               

               Cow position:
               chr1:23098256-23097781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 133
               

               Conread position:
               2-461
               

               Cow position:
               chr1:101671734-101672196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 39
               

               Conread position:
               2-464
               

               Cow position:
               chr1:51481242-51481702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               311
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               15, 75
               

               Conread position:
               2-465
               

               Cow position:
               chr1:41518208-41518676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 65
               

               Conread position:
               2-465
               

               Cow position:
               chr1:77165089-77164623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 97
               

               Conread position:
               2-465
               

               Cow position:
               chr1:82368366-82367883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 185
               

               Conread position:
               2-465
               

               Cow position:
               chr1:98787810-98787316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 187
               

               Conread position:
               2-466
               

               Cow position:
               chr1:10011693-10012166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               92, 36
               

               Conread position:
               3-464
               

               Cow position:
               chr1:71451685-71451204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               308
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 381
               

               Conread position:
               4-352
               

               Cow position:
               chr1:31596595-31596234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 264
               

               Conread position:
               4-360
               

               Cow position:
               chr1:5504553-5504183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-368
               

               Cow position:
               chr1:57948676-57948301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 79
               

               Conread position:
               4-375
               

               Cow position:
               chr1:57525688-57525303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               18, 199
               

               Conread position:
               4-383
               

               Cow position:
               chr1:22631395-22631789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 111
               

               Conread position:
               4-461
               

               Cow position:
               chr1:26812458-26812926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 157
               

               Conread position:
               4-464
               

               Cow position:
               chr1:82655263-82654784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 243
               

               Conread position:
               4-465
               

               Cow position:
               chr1:3932630-3933119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:5300473-5300954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:8556299-8555823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr1:10725237-10724757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:15437306-15437784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 172
               

               Conread position:
               4-465
               

               Cow position:
               chr1:17033976-17034450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:20831466-20830988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 181
               

               Conread position:
               4-465
               

               Cow position:
               chr1:21090062-21089578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:22907489-22907003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 137
               

               Conread position:
               4-465
               

               Cow position:
               chr1:25054899-25054420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:26515762-26516235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               4-465
               

               Cow position:
               chr1:27310419-27310888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 116
               

               Conread position:
               4-465
               

               Cow position:
               chr1:28713655-28713175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:28875704-28875212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 436
               

               Conread position:
               4-465
               

               Cow position:
               chr1:30075488-30075014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 60
               

               Conread position:
               4-465
               

               Cow position:
               chr1:31363485-31363962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 102
               

               Conread position:
               4-465
               

               Cow position:
               chr1:32565315-32565788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 120
               

               Conread position:
               4-465
               

               Cow position:
               chr1:32962285-32961815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr1:33714705-33714224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 317
               

               Conread position:
               4-465
               

               Cow position:
               chr1:33898880-33898400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 136
               

               Conread position:
               4-465
               

               Cow position:
               chr1:39546394-39545913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 210
               

               Conread position:
               4-465
               

               Cow position:
               chr1:40510638-40511107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 116
               

               Conread position:
               4-465
               

               Cow position:
               chr1:40682116-40682602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr1:40965788-40966262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 120
               

               Conread position:
               4-465
               

               Cow position:
               chr1:48249516-48249038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:53310852-53310380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr1:55274423-55274901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:55328782-55329260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 198
               

               Conread position:
               4-465
               

               Cow position:
               chr1:56620852-56620371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:57363716-57364200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 125
               

               Conread position:
               4-465
               

               Cow position:
               chr1:59206456-59206937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 147
               

               Conread position:
               4-465
               

               Cow position:
               chr1:67000299-67000780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:71560130-71560608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:72184250-72184731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:73064722-73065203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:73439578-73440059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 413
               

               Conread position:
               4-465
               

               Cow position:
               chr1:74284059-74284538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 267
               

               Conread position:
               4-465
               

               Cow position:
               chr1:77747358-77746875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 235
               

               Conread position:
               4-465
               

               Cow position:
               chr1:79633939-79634414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:81779068-81778591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 154
               

               Conread position:
               4-465
               

               Cow position:
               chr1:85794585-85794102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 428
               

               Conread position:
               4-465
               

               Cow position:
               chr1:89493612-89494083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr1:90973566-90973086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr1:94662291-94661815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 45
               

               Conread position:
               4-465
               

               Cow position:
               chr1:98616182-98616650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr1:101833017-101832555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               315
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               5-421
               

               Cow position:
               chr1:28175590-28176024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 425
               

               Conread position:
               5-463
               

               Cow position:
               chr1:31400792-31401270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               5-465
               

               Cow position:
               chr1:41780486-41780969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 189
               

               Conread position:
               6-461
               

               Cow position:
               chr1:29949197-29949664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 135
               

               Conread position:
               7-389
               

               Cow position:
               chr1:33352141-33351760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 112
               

               Conread position:
               7-464
               

               Cow position:
               chr1:9377924-9378399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 47
               

               Conread position:
               7-465
               

               Cow position:
               chr1:40577548-40577064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 106
               

               Conread position:
               7-465
               

               Cow position:
               chr1:91672269-91672747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               7-465
               

               Cow position:
               chr1:91901632-91901166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 28
               

               Conread position:
               9-368
               

               Cow position:
               chr1:1827203-1827563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 89
               

               Conread position:
               10-465
               

               Cow position:
               chr1:30439455-30438980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               11-368
               

               Cow position:
               chr1:53422507-53422129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 142
               

               Conread position:
               14-383
               

               Cow position:
               chr1:18226982-18226605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               145, 10
               

               Conread position:
               15-465
               

               Cow position:
               chr1:53396126-53395649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 16
               

               Conread position:
               16-465
               

               Cow position:
               chr1:86507025-86507485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 207
               

               Conread position:
               17-460
               

               Cow position:
               chr1:66487829-66487367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 306
               

               Conread position:
               21-470
               

               Cow position:
               chr1:34695295-34694826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 51
               

               Conread position:
               23-481
               

               Cow position:
               chr1:38383919-38384342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               268, 12
               

               Conread position:
               25-362
               

               Cow position:
               chr1:64697694-64697349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               91, 38
               

               Conread position:
               26-391
               

               Cow position:
               chr1:86363055-86362691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 54
               

               Conread position:
               31-465
               

               Cow position:
               chr1:82910240-82910687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 97
               

               Conread position:
               39-465
               

               Cow position:
               chr1:98657361-98657785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               305, 227
               

               Conread position:
               41-465
               

               Cow position:
               chr1:19183730-19184169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 128
               

               Conread position:
               44-465
               

               Cow position:
               chr1:67911134-67910692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 0
               

               Conread position:
               52-467
               

               Cow position:
               chr1:65611871-65611456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 25
               

               Conread position:
               54-465
               

               Cow position:
               chr1:42738993-42738570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 169
               

               Conread position:
               57-463
               

               Cow position:
               chr1:69769148-69768719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 108
               

               Conread position:
               76-465
               

               Cow position:
               chr1:26585668-26585261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 162
               

               Conread position:
               79-462
               

               Cow position:
               chr1:30494479-30494089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 128
               

               Conread position:
               94-462
               

               Cow position:
               chr1:72138577-72138195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 150
               

               Conread position:
               97-461
               

               Cow position:
               chr1:22844988-22844618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               127, 39
               

               Conread position:
               97-465
               

               Cow position:
               chr1:47160871-47161264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 154
               

               Conread position:
               97-465
               

               Cow position:
               chr1:65570579-65570966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               98-465
               

               Cow position:
               chr1:69405535-69405149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 0
               

               Conread position:
               102-464
               

               Cow position:
               chr1:56166044-56165667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               265
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               137, 96
               

               Conread position:
               108-464
               

               Cow position:
               chr1:28676623-28676269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               252
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               243, 51
               

               Conread position:
               114-464
               

               Cow position:
               chr1:72996515-72996160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               171, 9
               

               Conread position:
               126-465
               

               Cow position:
               chr1:91448428-91448086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               39, 68
               

               Conread position:
               144-467
               

               Cow position:
               chr1:71739454-71739794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               137, 44
               

               Conread position:
               145-334
               

               Cow position:
               chr1:92554623-92554813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               156
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               145, 88
               

               Conread position:
               148-456
               

               Cow position:
               chr1:10030473-10030790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               140, 50
               

               Conread position:
               153-467
               

               Cow position:
               chr1:29040702-29040383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 35
               

               Conread position:
               159-393
               

               Cow position:
               chr1:82862977-82862728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               159-465
               

               Cow position:
               chr1:33549225-33549547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               129, 47
               

               Conread position:
               159-465
               

               Cow position:
               chr1:100593760-100594085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               129, 164
               

               Conread position:
               163-456
               

               Cow position:
               chr1:42890591-42890905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               127, 164
               

               Conread position:
               163-463
               

               Cow position:
               chr1:100605022-100605339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               121, 16
               

               Conread position:
               181-465
               

               Cow position:
               chr1:21306775-21306472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               224-465
               

               Cow position:
               chr1:17189244-17189504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               248-465
               

               Cow position:
               chr1:23754993-23755224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               294-464
               

               Cow position:
               chr1:88388708-88388534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               1-375
               

               Cow position:
               chr10:57987059-57987445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-421
               

               Cow position:
               chr10:39849583-39850035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-464
               

               Cow position:
               chr10:33424898-33425389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 210
               

               Conread position:
               1-465
               

               Cow position:
               chr10:16797345-16796854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               1-465
               

               Cow position:
               chr10:19842311-19841846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 29
               

               Conread position:
               1-465
               

               Cow position:
               chr10:40348017-40348495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 29
               

               Conread position:
               2-368
               

               Cow position:
               chr10:20268053-20268432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 138
               

               Conread position:
               2-368
               

               Cow position:
               chr10:38723915-38723537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 125
               

               Conread position:
               2-387
               

               Cow position:
               chr10:14855255-14854872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 96
               

               Conread position:
               2-421
               

               Cow position:
               chr10:15620743-15621177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 19
               

               Conread position:
               2-456
               

               Cow position:
               chr10:44670020-44670494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               319
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               137, 117
               

               Conread position:
               2-461
               

               Cow position:
               chr10:28528759-28529225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 170
               

               Conread position:
               2-464
               

               Cow position:
               chr10:20936222-20936700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               323
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               126, 93
               

               Conread position:
               2-464
               

               Cow position:
               chr10:26292847-26293329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               2-465
               

               Cow position:
               chr10:38543280-38543750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               2-465
               

               Cow position:
               chr10:53318148-53318624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 188
               

               Conread position:
               3-465
               

               Cow position:
               chr10:22574191-22574673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 42
               

               Conread position:
               3-465
               

               Cow position:
               chr10:33221196-33221663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               104, 18
               

               Conread position:
               4-338
               

               Cow position:
               chr10:22645673-22645355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               19, 78
               

               Conread position:
               4-368
               

               Cow position:
               chr10:50017725-50018096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 115
               

               Conread position:
               4-382
               

               Cow position:
               chr10:22618774-22619159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 111
               

               Conread position:
               4-383
               

               Cow position:
               chr10:21516372-21516764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 239
               

               Conread position:
               4-463
               

               Cow position:
               chr10:41160054-41159581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 102
               

               Conread position:
               4-464
               

               Cow position:
               chr10:17958721-17958242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 0
               

               Conread position:
               4-464
               

               Cow position:
               chr10:25340790-25340316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 27
               

               Conread position:
               4-465
               

               Cow position:
               chr10:1380139-1379661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:2118386-2118867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:5867923-5868395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:7895844-7896322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr10:8292767-8292290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 226
               

               Conread position:
               4-465
               

               Cow position:
               chr10:13851784-13851303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:14333204-14333682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:14865493-14865021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 188
               

               Conread position:
               4-465
               

               Cow position:
               chr10:19141967-19142451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 199
               

               Conread position:
               4-465
               

               Cow position:
               chr10:21489583-21489109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 188
               

               Conread position:
               4-465
               

               Cow position:
               chr10:22344116-22343629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 274
               

               Conread position:
               4-465
               

               Cow position:
               chr10:25563920-25564392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 102
               

               Conread position:
               4-465
               

               Cow position:
               chr10:29629632-29630099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 195
               

               Conread position:
               4-465
               

               Cow position:
               chr10:30682851-30683323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:30688637-30688146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:31526357-31525888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 187
               

               Conread position:
               4-465
               

               Cow position:
               chr10:32703403-32702922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:37127137-37127630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 213
               

               Conread position:
               4-465
               

               Cow position:
               chr10:38342724-38343211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:39210397-39209915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr10:39813754-39814235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr10:41569742-41569268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 186
               

               Conread position:
               4-465
               

               Cow position:
               chr10:51950459-51950934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 197
               

               Conread position:
               4-465
               

               Cow position:
               chr10:53172680-53173161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               5-456
               

               Cow position:
               chr10:41149104-41149553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               322
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               17, 52
               

               Conread position:
               8-465
               

               Cow position:
               chr10:25650784-25651253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 193
               

               Conread position:
               11-465
               

               Cow position:
               chr10:10584760-10584302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 152
               

               Conread position:
               13-351
               

               Cow position:
               chr10:42115878-42115538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 12
               

               Conread position:
               13-465
               

               Cow position:
               chr10:20381336-20381795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 92
               

               Conread position:
               14-466
               

               Cow position:
               chr10:6002939-6003414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               320
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               24, 152
               

               Conread position:
               16-465
               

               Cow position:
               chr10:57090643-57090186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               308
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               120, 179
               

               Conread position:
               24-465
               

               Cow position:
               chr10:48745195-48745651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 198
               

               Conread position:
               26-465
               

               Cow position:
               chr10:4500565-4500118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 22
               

               Conread position:
               31-360
               

               Cow position:
               chr10:31540975-31540636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               33-465
               

               Cow position:
               chr10:20368546-20368982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               254, 51
               

               Conread position:
               41-464
               

               Cow position:
               chr10:31738703-31738272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               295
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               189, 42
               

               Conread position:
               46-465
               

               Cow position:
               chr10:28948063-28947623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 11
               

               Conread position:
               68-450
               

               Cow position:
               chr10:37108965-37108570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 296
               

               Conread position:
               70-464
               

               Cow position:
               chr10:58600093-58599692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 17
               

               Conread position:
               77-349
               

               Cow position:
               chr10:53980363-53980649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               35, 97
               

               Conread position:
               87-465
               

               Cow position:
               chr10:12546541-12546144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 0
               

               Conread position:
               133-464
               

               Cow position:
               chr10:49185993-49186331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               155, 53
               

               Conread position:
               136-465
               

               Cow position:
               chr10:20373904-20374252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               78, 139
               

               Conread position:
               144-465
               

               Cow position:
               chr10:54128052-54127713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               148, 44
               

               Conread position:
               155-465
               

               Cow position:
               chr10:41654785-41654463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               128, 31
               

               Conread position:
               161-465
               

               Cow position:
               chr10:39937308-39937617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               176-465
               

               Cow position:
               chr10:36445167-36445461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               7, 213
               

               Conread position:
               181-465
               

               Cow position:
               chr10:42633375-42633080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 158
               

               Conread position:
               194-467
               

               Cow position:
               chr10:19720660-19720946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               94, 34
               

               Conread position:
               213-465
               

               Cow position:
               chr10:31022465-31022736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               294-465
               

               Cow position:
               chr10:58599524-58599344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               1-449
               

               Cow position:
               chr11:1487832-1488294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 205
               

               Conread position:
               1-461
               

               Cow position:
               chr11:9154911-9155376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 30
               

               Conread position:
               1-464
               

               Cow position:
               chr11:17105403-17105882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 206
               

               Conread position:
               1-465
               

               Cow position:
               chr11:19061796-19062272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 248
               

               Conread position:
               1-465
               

               Cow position:
               chr11:71331781-71331300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 206
               

               Conread position:
               2-368
               

               Cow position:
               chr11:12504576-12504946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 17
               

               Conread position:
               2-463
               

               Cow position:
               chr11:45107129-45106649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               2-464
               

               Cow position:
               chr11:26785532-26785058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 208
               

               Conread position:
               2-464
               

               Cow position:
               chr11:67863997-67864475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 37
               

               Conread position:
               2-465
               

               Cow position:
               chr11:10884575-10884090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 145
               

               Conread position:
               2-465
               

               Cow position:
               chr11:28393171-28392686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 97
               

               Conread position:
               2-465
               

               Cow position:
               chr11:39805993-39805527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 112
               

               Conread position:
               2-465
               

               Cow position:
               chr11:73467138-73467631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 62
               

               Conread position:
               2-465
               

               Cow position:
               chr11:85731738-85732233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 251
               

               Conread position:
               2-467
               

               Cow position:
               chr11:42364975-42364502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 125
               

               Conread position:
               3-465
               

               Cow position:
               chr11:9761502-9761977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               240, 88
               

               Conread position:
               4-349
               

               Cow position:
               chr11:37280406-37280761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 267
               

               Conread position:
               4-357
               

               Cow position:
               chr11:67296733-67297097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               4-456
               

               Cow position:
               chr11:78791789-78792261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-463
               

               Cow position:
               chr11:56917728-56918189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 40
               

               Conread position:
               4-464
               

               Cow position:
               chr11:44254352-44253874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 159
               

               Conread position:
               4-465
               

               Cow position:
               chr11:418446-418926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 84
               

               Conread position:
               4-465
               

               Cow position:
               chr11:2834555-2834077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 92
               

               Conread position:
               4-465
               

               Cow position:
               chr11:3495254-3494779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 34
               

               Conread position:
               4-465
               

               Cow position:
               chr11:4033123-4033598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               4-465
               

               Cow position:
               chr11:8265804-8265317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 197
               

               Conread position:
               4-465
               

               Cow position:
               chr11:9732399-9732877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr11:11591245-11590763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:17548435-17547973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 125
               

               Conread position:
               4-465
               

               Cow position:
               chr11:20731947-20732428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr11:28227504-28227975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr11:30201414-30201890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr11:30254503-30254029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 45
               

               Conread position:
               4-465
               

               Cow position:
               chr11:32454337-32453856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:41168419-41168900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:47737270-47737743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr11:53429746-53430227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:63391200-63391681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:73135578-73135101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr11:75392528-75392047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr11:76371784-76372255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 37
               

               Conread position:
               4-465
               

               Cow position:
               chr11:84966389-84965912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr11:85391548-85392029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-470
               

               Cow position:
               chr11:67445966-67446451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               5-358
               

               Cow position:
               chr11:21471069-21470719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 43
               

               Conread position:
               5-465
               

               Cow position:
               chr11:66731431-66730956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 230
               

               Conread position:
               6-464
               

               Cow position:
               chr11:49237684-49238159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 24
               

               Conread position:
               7-465
               

               Cow position:
               chr11:42310175-42310636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 32
               

               Conread position:
               17-465
               

               Cow position:
               chr11:24395577-24395116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 189
               

               Conread position:
               18-464
               

               Cow position:
               chr11:261446-261884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 98
               

               Conread position:
               24-499
               

               Cow position:
               chr11:7720132-7720623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 55
               

               Conread position:
               41-363
               

               Cow position:
               chr11:40004045-40004365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               192, 69
               

               Conread position:
               50-465
               

               Cow position:
               chr11:29666359-29666789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 156
               

               Conread position:
               60-461
               

               Cow position:
               chr11:54482291-54482707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 21
               

               Conread position:
               77-348
               

               Cow position:
               chr11:31749438-31749712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               211, 145
               

               Conread position:
               108-349
               

               Cow position:
               chr11:67155807-67155559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               180, 124
               

               Conread position:
               120-465
               

               Cow position:
               chr11:49551979-49552342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               250
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               165, 126
               

               Conread position:
               125-465
               

               Cow position:
               chr11:1493576-1493934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               112, 60
               

               Conread position:
               127-465
               

               Cow position:
               chr11:27056407-27056759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 40
               

               Conread position:
               131-394
               

               Cow position:
               chr11:27659114-27658837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               23, 115
               

               Conread position:
               134-465
               

               Cow position:
               chr11:50948180-50948520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               148, 37
               

               Conread position:
               138-465
               

               Cow position:
               chr11:49557145-49557478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               157, 47
               

               Conread position:
               148-465
               

               Cow position:
               chr11:43512501-43512823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               142, 93
               

               Conread position:
               167-465
               

               Cow position:
               chr11:87137395-87137072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               205-465
               

               Cow position:
               chr11:58138497-58138219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               210-466
               

               Cow position:
               chr11:55484278-55484003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 249
               

               Conread position:
               225-465
               

               Cow position:
               chr11:35893846-35894110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               63, 205
               

               Conread position:
               1-465
               

               Cow position:
               chr12:12295103-12294612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               1-465
               

               Cow position:
               chr12:30686307-30685824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 177
               

               Conread position:
               1-465
               

               Cow position:
               chr12:34175919-34175436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 270
               

               Conread position:
               1-465
               

               Cow position:
               chr12:37561570-37561089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 117
               

               Conread position:
               2-456
               

               Cow position:
               chr12:36573486-36573945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               301
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               288, 42
               

               Conread position:
               2-465
               

               Cow position:
               chr12:21129599-21129125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 164
               

               Conread position:
               2-469
               

               Cow position:
               chr12:2284564-2284091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 33
               

               Conread position:
               3-355
               

               Cow position:
               chr12:27515222-27514865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 74
               

               Conread position:
               3-461
               

               Cow position:
               chr12:26922468-26922003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               129, 48
               

               Conread position:
               3-464
               

               Cow position:
               chr12:35632956-35633428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               285, 16
               

               Conread position:
               3-465
               

               Cow position:
               chr12:24432332-24432801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 151
               

               Conread position:
               4-363
               

               Cow position:
               chr12:1404831-1404462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 134
               

               Conread position:
               4-368
               

               Cow position:
               chr12:21483959-21483602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               18, 42
               

               Conread position:
               4-383
               

               Cow position:
               chr12:758009-757628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 32
               

               Conread position:
               4-464
               

               Cow position:
               chr12:17968347-17967886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               314
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               119, 31
               

               Conread position:
               4-465
               

               Cow position:
               chr12:1407395-1406913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr12:3179931-3179459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr12:3363504-3363025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 271
               

               Conread position:
               4-465
               

               Cow position:
               chr12:3717711-3718181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 387
               

               Conread position:
               4-465
               

               Cow position:
               chr12:12755596-12756077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr12:24993408-24993889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr12:27853388-27853877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr12:32656114-32655637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 186
               

               Conread position:
               4-469
               

               Cow position:
               chr12:20460662-20461144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               5-368
               

               Cow position:
               chr12:18467351-18466976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 113
               

               Conread position:
               5-383
               

               Cow position:
               chr12:8143076-8143436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               12, 56
               

               Conread position:
               5-465
               

               Cow position:
               chr12:21944677-21944218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 202
               

               Conread position:
               7-461
               

               Cow position:
               chr12:24980241-24979772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 200
               

               Conread position:
               9-465
               

               Cow position:
               chr12:21211229-21210752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               14-456
               

               Cow position:
               chr12:29446272-29445827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               16-465
               

               Cow position:
               chr12:21091190-21091645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 15
               

               Conread position:
               40-465
               

               Cow position:
               chr12:23100528-23100976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               42, 135
               

               Conread position:
               70-362
               

               Cow position:
               chr12:27930261-27930563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 136
               

               Conread position:
               80-465
               

               Cow position:
               chr12:14213685-14214089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               159-465
               

               Cow position:
               chr12:14659946-14660261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               129, 18
               

               Conread position:
               159-465
               

               Cow position:
               chr12:20845317-20844992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               128, 176
               

               Conread position:
               1-465
               

               Cow position:
               chr13:18330772-18331234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 68
               

               Conread position:
               1-465
               

               Cow position:
               chr13:20539512-20539972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 23
               

               Conread position:
               2-336
               

               Cow position:
               chr13:20377260-20376942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               131, 77
               

               Conread position:
               2-383
               

               Cow position:
               chr13:54239073-54239468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               2-464
               

               Cow position:
               chr13:44324601-44325090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               2-465
               

               Cow position:
               chr13:33930052-33930508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               323
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               15, 28
               

               Conread position:
               2-466
               

               Cow position:
               chr13:36105491-36105025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 192
               

               Conread position:
               2-466
               

               Cow position:
               chr13:49194367-49194841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               316
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               128, 32
               

               Conread position:
               2-467
               

               Cow position:
               chr13:22480355-22479882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               3-364
               

               Cow position:
               chr13:15883714-15884090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               4-342
               

               Cow position:
               chr13:5230598-5230939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 26
               

               Conread position:
               4-372
               

               Cow position:
               chr13:26846828-26846461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               4-383
               

               Cow position:
               chr13:30652934-30653325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 169
               

               Conread position:
               4-444
               

               Cow position:
               chr13:33333997-33334439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 195
               

               Conread position:
               4-465
               

               Cow position:
               chr13:680126-679650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 219
               

               Conread position:
               4-465
               

               Cow position:
               chr13:4733884-4733405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 210
               

               Conread position:
               4-465
               

               Cow position:
               chr13:4735628-4735149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 210
               

               Conread position:
               4-465
               

               Cow position:
               chr13:4943736-4943258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr13:6665783-6666266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr13:11827376-11827851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr13:15922107-15922585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr13:17310768-17310289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               4-465
               

               Cow position:
               chr13:30305543-30305068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               4-465
               

               Cow position:
               chr13:31728547-31729025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 143
               

               Conread position:
               4-465
               

               Cow position:
               chr13:32549110-32548630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 102
               

               Conread position:
               4-465
               

               Cow position:
               chr13:32734836-32735321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 166
               

               Conread position:
               4-465
               

               Cow position:
               chr13:32983047-32983526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr13:33523605-33524086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr13:34870313-34869834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 95
               

               Conread position:
               4-465
               

               Cow position:
               chr13:35539517-35539034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr13:49613189-49613663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr13:49976020-49975549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr13:50111820-50111333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr13:50191274-50191756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-469
               

               Cow position:
               chr13:11389558-11389074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               5-463
               

               Cow position:
               chr13:43591622-43591176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               5-465
               

               Cow position:
               chr13:3313976-3313508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               6-363
               

               Cow position:
               chr13:30240899-30240536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 179
               

               Conread position:
               6-465
               

               Cow position:
               chr13:11796357-11796839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 23
               

               Conread position:
               7-464
               

               Cow position:
               chr13:25381750-25381276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 80
               

               Conread position:
               7-465
               

               Cow position:
               chr13:15279442-15279919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 434
               

               Conread position:
               7-465
               

               Cow position:
               chr13:30470027-30470493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 206
               

               Conread position:
               7-465
               

               Cow position:
               chr13:34344261-34343781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               14-465
               

               Cow position:
               chr13:21837876-21838339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 21
               

               Conread position:
               15-440
               

               Cow position:
               chr13:47368506-47368071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 33
               

               Conread position:
               17-465
               

               Cow position:
               chr13:7049978-7049521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 190
               

               Conread position:
               18-465
               

               Cow position:
               chr13:34509473-34509937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 189
               

               Conread position:
               27-383
               

               Cow position:
               chr13:60425330-60424955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 223
               

               Conread position:
               53-465
               

               Cow position:
               chr13:47576393-47575969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 78
               

               Conread position:
               55-368
               

               Cow position:
               chr13:18976705-18977018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 114
               

               Conread position:
               59-465
               

               Cow position:
               chr13:20572801-20573219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 126
               

               Conread position:
               69-463
               

               Cow position:
               chr13:11762351-11762762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 90
               

               Conread position:
               71-463
               

               Cow position:
               chr13:34906244-34906649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 136
               

               Conread position:
               76-461
               

               Cow position:
               chr13:19044286-19044686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               281
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               45, 41
               

               Conread position:
               81-465
               

               Cow position:
               chr13:8068880-8069285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 0
               

               Conread position:
               81-465
               

               Cow position:
               chr13:21698551-21698149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 157
               

               Conread position:
               97-459
               

               Cow position:
               chr13:36868161-36867788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               100-368
               

               Cow position:
               chr13:9300136-9299861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               188, 103
               

               Conread position:
               123-465
               

               Cow position:
               chr13:31609563-31609920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               254
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               162, 83
               

               Conread position:
               144-368
               

               Cow position:
               chr13:32321366-32321601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               153-465
               

               Cow position:
               chr13:16921662-16921331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               167-465
               

               Cow position:
               chr13:10374262-10373932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               39, 59
               

               Conread position:
               192-458
               

               Cow position:
               chr13:12635075-12634797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               106, 6
               

               Conread position:
               1-343
               

               Cow position:
               chr14:28122801-28123136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               1-359
               

               Cow position:
               chr14:5531563-5531197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 206
               

               Conread position:
               1-465
               

               Cow position:
               chr14:11475067-11475545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 114
               

               Conread position:
               1-465
               

               Cow position:
               chr14:34668561-34669046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-465
               

               Cow position:
               chr14:45236737-45236273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 139
               

               Conread position:
               2-383
               

               Cow position:
               chr14:14421182-14421587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               2-424
               

               Cow position:
               chr14:37982069-37982522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               2-465
               

               Cow position:
               chr14:34054192-34053743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               316
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               38, 95
               

               Conread position:
               2-465
               

               Cow position:
               chr14:35363630-35364122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 213
               

               Conread position:
               2-465
               

               Cow position:
               chr14:35931590-35931120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 43
               

               Conread position:
               2-465
               

               Cow position:
               chr14:41411971-41411489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 62
               

               Conread position:
               2-465
               

               Cow position:
               chr14:45187612-45188074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 34
               

               Conread position:
               4-349
               

               Cow position:
               chr14:33679286-33678949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 84
               

               Conread position:
               4-375
               

               Cow position:
               chr14:16997814-16998196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 203
               

               Conread position:
               4-463
               

               Cow position:
               chr14:16917504-16917982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 196
               

               Conread position:
               4-463
               

               Cow position:
               chr14:50113590-50113114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 146
               

               Conread position:
               4-464
               

               Cow position:
               chr14:27065548-27066015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 157
               

               Conread position:
               4-464
               

               Cow position:
               chr14:44691404-44690924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 103
               

               Conread position:
               4-465
               

               Cow position:
               chr14:192276-191797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 186
               

               Conread position:
               4-465
               

               Cow position:
               chr14:1660676-1660206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 229
               

               Conread position:
               4-465
               

               Cow position:
               chr14:12740819-12741300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr14:15273328-15273807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 195
               

               Conread position:
               4-465
               

               Cow position:
               chr14:19326035-19326515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 179
               

               Conread position:
               4-465
               

               Cow position:
               chr14:22029248-22029724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 20
               

               Conread position:
               4-465
               

               Cow position:
               chr14:29045453-29045932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 147
               

               Conread position:
               4-465
               

               Cow position:
               chr14:32449185-32448704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr14:34904578-34904098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 183
               

               Conread position:
               4-465
               

               Cow position:
               chr14:37226393-37225904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr14:41271976-41272449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 75
               

               Conread position:
               4-465
               

               Cow position:
               chr14:46222306-46221825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 259
               

               Conread position:
               4-465
               

               Cow position:
               chr14:48827501-48827019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 105
               

               Conread position:
               5-450
               

               Cow position:
               chr14:8899507-8899049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               5-463
               

               Cow position:
               chr14:44554047-44553575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 133
               

               Conread position:
               5-465
               

               Cow position:
               chr14:13463651-13463182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 25
               

               Conread position:
               5-465
               

               Cow position:
               chr14:44229514-44229037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 89
               

               Conread position:
               7-465
               

               Cow position:
               chr14:46434837-46434368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 98
               

               Conread position:
               7-470
               

               Cow position:
               chr14:13861298-13861775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               8-465
               

               Cow position:
               chr14:2288477-2288012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 199
               

               Conread position:
               18-465
               

               Cow position:
               chr14:38149340-38148856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 349
               

               Conread position:
               21-465
               

               Cow position:
               chr14:7474555-7474098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 176
               

               Conread position:
               24-456
               

               Cow position:
               chr14:9849703-9850140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 95
               

               Conread position:
               31-465
               

               Cow position:
               chr14:42121380-42121836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               41-465
               

               Cow position:
               chr14:36908018-36908461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 0
               

               Conread position:
               48-460
               

               Cow position:
               chr14:26457311-26456881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 160
               

               Conread position:
               63-465
               

               Cow position:
               chr14:43557123-43556701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 183
               

               Conread position:
               64-465
               

               Cow position:
               chr14:30581958-30582374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 142
               

               Conread position:
               97-465
               

               Cow position:
               chr14:34763023-34763410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 0
               

               Conread position:
               102-338
               

               Cow position:
               chr14:30594080-30594325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 106
               

               Conread position:
               108-467
               

               Cow position:
               chr14:17768046-17768417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               21, 44
               

               Conread position:
               114-465
               

               Cow position:
               chr14:45208672-45208308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               19, 54
               

               Conread position:
               123-458
               

               Cow position:
               chr14:23933207-23932867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               138, 95
               

               Conread position:
               131-465
               

               Cow position:
               chr14:20784684-20784336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               247
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               153, 75
               

               Conread position:
               134-465
               

               Cow position:
               chr14:39299716-39299370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               154, 12
               

               Conread position:
               144-465
               

               Cow position:
               chr14:48706043-48705730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               228, 54
               

               Conread position:
               147-368
               

               Cow position:
               chr14:2296567-2296333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               85, 74
               

               Conread position:
               153-465
               

               Cow position:
               chr14:16807246-16807575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               130, 47
               

               Conread position:
               153-467
               

               Cow position:
               chr14:33713145-33712823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               135, 65
               

               Conread position:
               159-465
               

               Cow position:
               chr14:17688918-17688594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               159-467
               

               Cow position:
               chr14:33391860-33392180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               125, 25
               

               Conread position:
               163-465
               

               Cow position:
               chr14:41444395-41444073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               230
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               167-465
               

               Cow position:
               chr14:29582165-29581847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               61, 275
               

               Conread position:
               195-465
               

               Cow position:
               chr14:34999150-34998864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               213-465
               

               Cow position:
               chr14:46506603-46506872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               72, 128
               

               Conread position:
               226-463
               

               Cow position:
               chr14:16271323-16271576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               1-384
               

               Cow position:
               chr15:2806649-2807042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 206
               

               Conread position:
               1-446
               

               Cow position:
               chr15:29969130-29969582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 63
               

               Conread position:
               1-465
               

               Cow position:
               chr15:4387978-4387499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 29
               

               Conread position:
               1-465
               

               Cow position:
               chr15:6119641-6119166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               1-465
               

               Cow position:
               chr15:7236536-7236055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 29
               

               Conread position:
               1-466
               

               Cow position:
               chr15:4673473-4672986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 425
               

               Conread position:
               1-493
               

               Cow position:
               chr15:12365633-12365137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 19
               

               Conread position:
               2-421
               

               Cow position:
               chr15:8411262-8410831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 68
               

               Conread position:
               2-461
               

               Cow position:
               chr15:2670971-2671436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               2-465
               

               Cow position:
               chr15:9432157-9431679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               2-465
               

               Cow position:
               chr15:13679615-13679152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 33
               

               Conread position:
               2-465
               

               Cow position:
               chr15:16788552-16789034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 125
               

               Conread position:
               3-389
               

               Cow position:
               chr15:4917423-4917027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               4-383
               

               Cow position:
               chr15:8101682-8101289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 119
               

               Conread position:
               4-383
               

               Cow position:
               chr15:10825695-10825304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 110
               

               Conread position:
               4-456
               

               Cow position:
               chr15:14579921-14580393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               4-464
               

               Cow position:
               chr15:2014725-2014255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 189
               

               Conread position:
               4-465
               

               Cow position:
               chr15:59861-59403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               312
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               18, 84
               

               Conread position:
               4-465
               

               Cow position:
               chr15:1784559-1784081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 268
               

               Conread position:
               4-465
               

               Cow position:
               chr15:2645421-2645902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:4727431-4726948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 204
               

               Conread position:
               4-465
               

               Cow position:
               chr15:4948730-4948249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:5009411-5009890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 189
               

               Conread position:
               4-465
               

               Cow position:
               chr15:5497281-5496800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 183
               

               Conread position:
               4-465
               

               Cow position:
               chr15:5939443-5939918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 178
               

               Conread position:
               4-465
               

               Cow position:
               chr15:6080930-6080457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr15:6551538-6552018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 74
               

               Conread position:
               4-465
               

               Cow position:
               chr15:6615242-6614764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr15:7262850-7262361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr15:7565227-7564743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 145
               

               Conread position:
               4-465
               

               Cow position:
               chr15:13430048-13429568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 267
               

               Conread position:
               4-465
               

               Cow position:
               chr15:15344879-15345360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:16189544-16190025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:18229290-18228809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:18265537-18266015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 203
               

               Conread position:
               4-465
               

               Cow position:
               chr15:20412823-20412341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 134
               

               Conread position:
               4-465
               

               Cow position:
               chr15:21533904-21534377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 226
               

               Conread position:
               4-465
               

               Cow position:
               chr15:24297419-24296938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:25132180-25131699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:25204781-25205261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:28487902-28488379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr15:32713431-32712951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 111
               

               Conread position:
               4-465
               

               Cow position:
               chr15:33123607-33123126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:35738004-35737542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 69
               

               Conread position:
               4-465
               

               Cow position:
               chr15:36330234-36330714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 26
               

               Conread position:
               4-465
               

               Cow position:
               chr15:36623440-36623915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 181
               

               Conread position:
               4-465
               

               Cow position:
               chr15:42532146-42531665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               4-465
               

               Cow position:
               chr15:51219966-51219488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 230
               

               Conread position:
               4-469
               

               Cow position:
               chr15:32696391-32695892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               4-470
               

               Cow position:
               chr15:50149547-50149061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               5-438
               

               Cow position:
               chr15:2927470-2927029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 19
               

               Conread position:
               5-465
               

               Cow position:
               chr15:7940655-7940180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 113
               

               Conread position:
               5-465
               

               Cow position:
               chr15:51911318-51911790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 117
               

               Conread position:
               7-465
               

               Cow position:
               chr15:17397945-17397488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 205
               

               Conread position:
               7-465
               

               Cow position:
               chr15:35751074-35751553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 42
               

               Conread position:
               14-465
               

               Cow position:
               chr15:610033-610496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 63
               

               Conread position:
               16-421
               

               Cow position:
               chr15:25553215-25552783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               16-465
               

               Cow position:
               chr15:24796098-24795636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 101
               

               Conread position:
               22-464
               

               Cow position:
               chr15:13538655-13539106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               264, 18
               

               Conread position:
               26-385
               

               Cow position:
               chr15:16509066-16508694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 133
               

               Conread position:
               27-463
               

               Cow position:
               chr15:17215944-17216393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 170
               

               Conread position:
               45-459
               

               Cow position:
               chr15:4107131-4107573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               60, 162
               

               Conread position:
               68-421
               

               Cow position:
               chr15:25490429-25490069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               220, 132
               

               Conread position:
               69-364
               

               Cow position:
               chr15:29331766-29332066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               219, 53
               

               Conread position:
               78-451
               

               Cow position:
               chr15:2212382-2212770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 145
               

               Conread position:
               87-465
               

               Cow position:
               chr15:9736767-9737157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               276
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               201, 50
               

               Conread position:
               96-460
               

               Cow position:
               chr15:49522740-49522371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 21
               

               Conread position:
               98-444
               

               Cow position:
               chr15:36669764-36669429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               250, 23
               

               Conread position:
               98-465
               

               Cow position:
               chr15:19735912-19736298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 225
               

               Conread position:
               102-465
               

               Cow position:
               chr15:42318673-42319037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               12, 89
               

               Conread position:
               152-465
               

               Cow position:
               chr15:4814655-4814329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               142, 62
               
152-465UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr15:39447480-39447811 (view  custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               118, 34
               
158-470UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:1669490-1669181 (view  custom track)

               
               
               
Alignm length: 323

               
               
               
Alignm identity: 218

               
               
               
Alignm E-value: 1e-26

               
               
               
Alignm gaps (pig, cow): 5, 32
159-465UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:314012-314334 (view  custom track)

               
               
               
Alignm length: 324

               
               
               
Alignm identity: 226

               
               
               
Alignm E-value: 1e-37

               
               
               
Alignm gaps (pig, cow): 116, 171

               
               
               Conread position:159-465
               
               
               Cow position:chr15:4824465-4824150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:159-465
               
               
               Cow position:chr15:9002160-9002479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):129, 238

               
               
               Conread position:160-464
               
               
               Cow position:chr15:36279894-36280199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 217

               
               
               Conread position:228-465
               
               
               Cow position:chr15:2019129-2018876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 238

               
               
               Conread position:1-363
               
               
               Cow position:chr16:3348687-3348312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 191

               
               
               Conread position:1-448
               
               
               Cow position:chr16:46521170-46521637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:1-465
               
               
               Cow position:chr16:1434077-1433593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 249

               
               
               Conread position:1-465
               
               
               Cow position:chr16:5487650-5487164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr16:21189114-21188630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr16:27731502-27731975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr16:29048910-29048426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr16:37478981-37479452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:1-465
               
               
               Cow position:chr16:41164880-41165356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:1-465
               
               
               Cow position:chr16:47403263-47402782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:2-349
               
               
               Cow position:chr16:20408298-20408642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:2-390
               
               
               Cow position:chr16:29207333-29207742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:2-459
               
               
               Cow position:chr16:25935031-25934566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:2-465
               
               
               Cow position:chr16:41573285-41572806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 75

               
               
               Conread position:2-467
               
               
               Cow position:chr16:39615128-39614654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:2-493
               
               
               Cow position:chr16:28023145-28023647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:3-349
               
               
               Cow position:chr16:47475896-47475542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:3-465
               
               
               Cow position:chr16:28194422-28194904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-352
               
               
               Cow position:chr16:34505574-34505217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 203

               
               
               Conread position:4-368
               
               
               Cow position:chr16:51086659-51086285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-463
               
               
               Cow position:chr16:15980509-15980984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-463
               
               
               Cow position:chr16:42734751-42735215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 18

               
               
               Conread position:4-464
               
               
               Cow position:chr16:839160-838686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr16:2409018-2409492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:4-465
               
               
               Cow position:chr16:2725343-2725824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:4-465
               
               
               Cow position:chr16:3331787-3331321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 139

               
               
               Conread position:4-465
               
               
               Cow position:chr16:3770134-3770613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr16:5891882-5891410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:4-465
               
               
               Cow position:chr16:7674582-7675059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 412

               
               
               Conread position:4-465
               
               
               Cow position:chr16:10373805-10374282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 239

               
               
               Conread position:4-465
               
               
               Cow position:chr16:10440119-10439647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-465
               
               
               Cow position:chr16:16230189-16229704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:4-465
               
               
               Cow position:chr16:16268017-16268486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:4-465
               
               
               Cow position:chr16:23250111-23250580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:4-465
               
               
               Cow position:chr16:23365035-23365509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 20

               
               
               Conread position:4-465
               
               
               Cow position:chr16:25343853-25343373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr16:25455585-25456062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr16:26665593-26665130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:4-465
               
               
               Cow position:chr16:26991071-26991547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 184

               
               
               Conread position:4-465
               
               
               Cow position:chr16:28168441-28168921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr16:39034826-39035295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr16:41161593-41162068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr16:42162620-42162143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:4-465
               
               
               Cow position:chr16:43895386-43895865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr16:47787835-47787354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-486
               
               
               Cow position:chr16:2236893-2237400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 189

               
               
               Conread position:6-465
               
               
               Cow position:chr16:29035772-29035298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:7-394
               
               
               Cow position:chr16:41564258-41563860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 129

               
               
               Conread position:7-449
               
               
               Cow position:chr16:1565803-1566256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 23

               
               
               Conread position:7-461
               
               
               Cow position:chr16:46102836-46103303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:19-465
               
               
               Cow position:chr16:16992899-16992450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 25

               
               
               Conread position:21-465
               
               
               Cow position:chr16:12536087-12536550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:28-464
               
               
               Cow position:chr16:49254400-49254848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 92

               
               
               Conread position:28-470
               
               
               Cow position:chr16:25948460-25948903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 7

               
               
               Conread position:31-465
               
               
               Cow position:chr16:23876675-23877127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:31-466
               
               
               Cow position:chr16:20667048-20666599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:42-465
               
               
               Cow position:chr16:2890674-2891116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:43-342
               
               
               Cow position:chr16:27980536-27980843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):241, 99

               
               
               Conread position:45-465
               
               
               Cow position:chr16:39645487-39645056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:48-425
               
               
               Cow position:chr16:28269234-28269619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 144

               
               
               Conread position:59-420
               
               
               Cow position:chr16:56915288-56915662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):229, 49

               
               
               Conread position:77-465
               
               
               Cow position:chr16:25463105-25463505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 63

               
               
               Conread position:83-383
               
               
               Cow position:chr16:25126755-25127066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):205, 78

               
               
               Conread position:87-463
               
               
               Cow position:chr16:43845425-43845816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:98-465
               
               
               Cow position:chr16:48910051-48910428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:108-465
               
               
               Cow position:chr16:25443404-25443029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):180, 90

               
               
               Conread position:115-465
               
               
               Cow position:chr16:4798953-4799314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:119-465
               
               
               Cow position:chr16:5663601-5663243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):169, 52

               
               
               Conread position:120-448
               
               
               Cow position:chr16:21017495-21017147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:159-465
               
               
               Cow position:chr16:15568976-15568655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:160-465
               
               
               Cow position:chr16:41626530-41626209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:173-463
               
               
               Cow position:chr16:25259512-25259206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:185-461
               
               
               Cow position:chr16:23789839-23789544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 162

               
               
               Conread position:198-461
               
               
               Cow position:chr16:25742553-25742283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:1-369
               
               
               Cow position:chr17:1569941-1570319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 203

               
               
               Conread position:1-456
               
               
               Cow position:chr17:2176429-2175949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 368

               
               
               Conread position:1-463
               
               
               Cow position:chr17:7561511-7561989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 20

               
               
               Conread position:2-347
               
               
               Cow position:chr17:14233160-14233518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:2-389
               
               
               Cow position:chr17:43146129-43146526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:2-460
               
               
               Cow position:chr17:9752237-9751783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 191

               
               
               Conread position:2-465
               
               
               Cow position:chr17:14294102-14294577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 39

               
               
               Conread position:2-465
               
               
               Cow position:chr17:18590872-18590399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 142

               
               
               Conread position:2-465
               
               
               Cow position:chr17:21420393-21419911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 76

               
               
               Conread position:2-469
               
               
               Cow position:chr17:604620-605097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:4-363
               
               
               Cow position:chr17:11380745-11381119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 237

               
               
               Conread position:4-458
               
               
               Cow position:chr17:3284316-3283863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:4-461
               
               
               Cow position:chr17:3742605-3742128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-463
               
               
               Cow position:chr17:15140901-15141370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr17:5307294-5307774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-464
               
               
               Cow position:chr17:25738742-25738262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr17:137084-136604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 239

               
               
               Conread position:4-465
               
               
               Cow position:chr17:1705842-1705365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:4-465
               
               
               Cow position:chr17:1882711-1882237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:4-465
               
               
               Cow position:chr17:8211096-8210618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr17:14214592-14215061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:4-465
               
               
               Cow position:chr17:15709548-15710029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr17:16855653-16856137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr17:17257960-17257482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr17:18124495-18124964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:4-465
               
               
               Cow position:chr17:19979685-19980161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:4-465
               
               
               Cow position:chr17:20085334-20085805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:4-465
               
               
               Cow position:chr17:21768670-21769147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 195

               
               
               Conread position:4-465
               
               
               Cow position:chr17:22107201-22107682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr17:24784611-24784136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:4-465
               
               
               Cow position:chr17:27792338-27792805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 189

               
               
               Conread position:4-467
               
               
               Cow position:chr17:15438240-15437760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 318

               
               
               Conread position:4-470
               
               
               Cow position:chr17:15853165-15852666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:5-368
               
               
               Cow position:chr17:20079442-20079815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:5-456
               
               
               Cow position:chr17:10322403-10321957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:5-464
               
               
               Cow position:chr17:8204370-8203905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 201

               
               
               Conread position:6-461
               
               
               Cow position:chr17:2032675-2032204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:7-464
               
               
               Cow position:chr17:6070974-6070508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 23

               
               
               Conread position:7-465
               
               
               Cow position:chr17:6262302-6261826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:7-465
               
               
               Cow position:chr17:33282901-33283369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:8-467
               
               
               Cow position:chr17:1458833-1458354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:13-440
               
               
               Cow position:chr17:4210447-4210004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 161

               
               
               Conread position:16-363
               
               
               Cow position:chr17:2245617-2245970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 22

               
               
               Conread position:17-464
               
               
               Cow position:chr17:15327713-15327256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 24

               
               
               Conread position:18-465
               
               
               Cow position:chr17:18593659-18593196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:19-465
               
               
               Cow position:chr17:2553832-2554297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 0

               
               
               Conread position:24-463
               
               
               Cow position:chr17:1785586-1786032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 40

               
               
               Conread position:31-465
               
               
               Cow position:chr17:29825548-29826001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 0

               
               
               Conread position:41-445
               
               
               Cow position:chr17:2005501-2005098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:44-465
               
               
               Cow position:chr17:34575162-34574721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:55-461
               
               
               Cow position:chr17:3236336-3235929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:62-465
               
               
               Cow position:chr17:28026105-28026529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:110-465
               
               
               Cow position:chr17:43990839-43990472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:131-465
               
               
               Cow position:chr17:19216393-19216741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:132-465
               
               
               Cow position:chr17:14897275-14896928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:147-463
               
               
               Cow position:chr17:33791064-33790732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:153-465
               
               
               Cow position:chr17:14376531-14376216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:156-465
               
               
               Cow position:chr17:36284327-36283998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:159-465
               
               
               Cow position:chr17:22562192-22561873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:201-363
               
               
               Cow position:chr17:35990371-35990539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:202-464
               
               
               Cow position:chr17:23721522-23721239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:242-465
               
               
               Cow position:chr17:39050647-39050405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:291-456
               
               
               Cow position:chr17:3706669-3706839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:1-465
               
               
               Cow position:chr18:14418640-14418154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-368
               
               
               Cow position:chr18:12994662-12994287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:2-461
               
               
               Cow position:chr18:4979139-4979612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:2-465
               
               
               Cow position:chr18:16135987-16136492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:3-352
               
               
               Cow position:chr18:29120691-29120342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:3-463
               
               
               Cow position:chr18:16151174-16150710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:317
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:3-467
               
               
               Cow position:chr18:33344780-33344320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:4-338
               
               
               Cow position:chr18:14128627-14128961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:4-363
               
               
               Cow position:chr18:23801683-23801313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:4-363
               
               
               Cow position:chr18:28969626-28969996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-444
               
               
               Cow position:chr18:36775936-36775473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:4-450
               
               
               Cow position:chr18:55417385-55416925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-463
               
               
               Cow position:chr18:52655473-52654998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:4-465
               
               
               Cow position:chr18:603804-604273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr18:19355022-19354549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:4-465
               
               
               Cow position:chr18:22182868-22183340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr18:23702422-23702901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr18:25353909-25353432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr18:27168295-27167810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr18:27835424-27835903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 185

               
               
               Conread position:4-465
               
               
               Cow position:chr18:29863945-29864425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 171

               
               
               Conread position:4-465
               
               
               Cow position:chr18:30762297-30762778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr18:32437441-32437922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr18:36511281-36510803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr18:37508625-37508148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:4-465
               
               
               Cow position:chr18:51344765-51344282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 214

               
               
               Conread position:4-472
               
               
               Cow position:chr18:52630598-52631072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:5-337
               
               
               Cow position:chr18:17323062-17322724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 25

               
               
               Conread position:7-464
               
               
               Cow position:chr18:1047005-1046535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 118

               
               
               Conread position:7-465
               
               
               Cow position:chr18:37700836-37701306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 23

               
               
               Conread position:7-469
               
               
               Cow position:chr18:48390602-48390137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:8-456
               
               
               Cow position:chr18:37156086-37156556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 13

               
               
               Conread position:16-465
               
               
               Cow position:chr18:16146381-16146828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:21-464
               
               
               Cow position:chr18:40483648-40483191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 39

               
               
               Conread position:24-465
               
               
               Cow position:chr18:18853844-18853402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:31-465
               
               
               Cow position:chr18:16464228-16464675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 139

               
               
               Conread position:31-465
               
               
               Cow position:chr18:43129033-43128590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:38-469
               
               
               Cow position:chr18:15853240-15852799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:56-465
               
               
               Cow position:chr18:23441219-23441637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:60-465
               
               
               Cow position:chr18:25941507-25941083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:64-465
               
               
               Cow position:chr18:9661315-9660899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 6

               
               
               Conread position:76-480
               
               
               Cow position:chr18:19457457-19457032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 254

               
               
               Conread position:90-368
               
               
               Cow position:chr18:17998874-17999168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:101-465
               
               
               Cow position:chr18:28767364-28766982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:108-465
               
               
               Cow position:chr18:14132951-14132570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:132-465
               
               
               Cow position:chr18:47744027-47743677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 189

               
               
               Conread position:143-383
               
               
               Cow position:chr18:37664921-37664668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:151-450
               
               
               Cow position:chr18:52713547-52713240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:199-461
               
               
               Cow position:chr18:32259472-32259749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 225

               
               
               Conread position:230-457
               
               
               Cow position:chr18:9723043-9722797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr19:4388250-4387784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:1-465
               
               
               Cow position:chr19:39393180-39392698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:2-410
               
               
               Cow position:chr19:33649520-33649944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 23

               
               
               Conread position:2-464
               
               
               Cow position:chr19:191235-190758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:2-465
               
               
               Cow position:chr19:3088653-3089137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:2-465
               
               
               Cow position:chr19:12775792-12775310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 429

               
               
               Conread position:4-410
               
               
               Cow position:chr19:5732169-5731756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:4-462
               
               
               Cow position:chr19:41000-40547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:4-465
               
               
               Cow position:chr19:257977-257500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:4-465
               
               
               Cow position:chr19:7481270-7481747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 369

               
               
               Conread position:4-465
               
               
               Cow position:chr19:7490765-7490287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr19:15445198-15445674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 219

               
               
               Conread position:4-465
               
               
               Cow position:chr19:16317943-16318423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:4-465
               
               
               Cow position:chr19:20610999-20610518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr19:22511113-22511587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr19:39182872-39183353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr19:40849820-40850299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 248

               
               
               Conread position:5-465
               
               
               Cow position:chr19:1586589-1587053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:6-383
               
               
               Cow position:chr19:44758132-44758514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:6-465
               
               
               Cow position:chr19:33876080-33875602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 208

               
               
               Conread position:6-465
               
               
               Cow position:chr19:39665886-39666365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:8-470
               
               
               Cow position:chr19:42581619-42582101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 190

               
               
               Conread position:25-465
               
               
               Cow position:chr19:30757866-30757432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 118

               
               
               Conread position:26-358
               
               
               Cow position:chr19:24727036-24727374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 137

               
               
               Conread position:31-465
               
               
               Cow position:chr19:165484-165929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 167

               
               
               Conread position:44-465
               
               
               Cow position:chr19:5248159-5248602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:100-469
               
               
               Cow position:chr19:28789450-28789824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:119-465
               
               
               Cow position:chr19:2271567-2271929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):169, 87

               
               
               Conread position:139-465
               
               
               Cow position:chr19:5898977-5899319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:161-459
               
               
               Cow position:chr19:29086172-29085857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):47, 201

               
               
               Conread position:170-465
               
               
               Cow position:chr19:343744-343438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 40

               
               
               Conread position:195-467
               
               
               Cow position:chr19:174730-174447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:203-418
               
               
               Cow position:chr19:39690249-39690019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:224-467
               
               
               Cow position:chr19:3418304-3418044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 252

               
               
               Conread position:290-456
               
               
               Cow position:chr19:30452984-30453158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-363
               
               
               Cow position:chr2:5296388-5296024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:1-383
               
               
               Cow position:chr2:16321042-16320656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 122

               
               
               Conread position:1-434
               
               
               Cow position:chr2:3833404-3833844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:1-460
               
               
               Cow position:chr2:11685116-11684655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 162

               
               
               Conread position:1-465
               
               
               Cow position:chr2:28647505-28647985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr2:32063936-32064416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr2:52620890-52620419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr2:53331916-53331431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr2:73195095-73194618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 160

               
               
               Conread position:2-338
               
               
               Cow position:chr2:54695749-54695407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 208

               
               
               Conread position:2-389
               
               
               Cow position:chr2:1957065-1956679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):285, 19

               
               
               Conread position:2-401
               
               
               Cow position:chr2:18160833-18161234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:2-426
               
               
               Cow position:chr2:74860088-74859653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:2-463
               
               
               Cow position:chr2:4725092-4724607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:2-463
               
               
               Cow position:chr2:85691252-85690788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:315
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:2-465
               
               
               Cow position:chr2:72738498-72738969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:2-466
               
               
               Cow position:chr2:44057921-44058393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:2-467
               
               
               Cow position:chr2:43106442-43105953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:2-493
               
               
               Cow position:chr2:20918053-20918510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:3-349
               
               
               Cow position:chr2:6291022-6290671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 116

               
               
               Conread position:3-368
               
               
               Cow position:chr2:19766771-19767148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:3-461
               
               
               Cow position:chr2:16333019-16332555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:3-465
               
               
               Cow position:chr2:85080828-85081290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:4-363
               
               
               Cow position:chr2:11704707-11704351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:4-450
               
               
               Cow position:chr2:16329186-16328749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 201

               
               
               Conread position:4-456
               
               
               Cow position:chr2:50079672-50079203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-462
               
               
               Cow position:chr2:54739593-54739119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:4-464
               
               
               Cow position:chr2:3839380-3838928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr2:24687788-24687316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:974263-974740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr2:2182159-2182638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr2:4452480-4451999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr2:9956961-9957438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:9962961-9963438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:12478151-12478628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 153

               
               
               Conread position:4-465
               
               
               Cow position:chr2:13067894-13068363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:25886445-25886920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr2:41156300-41155825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:4-465
               
               
               Cow position:chr2:42668597-42669071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:43757530-43758010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:4-465
               
               
               Cow position:chr2:44093476-44093003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-465
               
               
               Cow position:chr2:46183425-46183905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr2:50981041-50981516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 182

               
               
               Conread position:4-465
               
               
               Cow position:chr2:53542047-53541570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr2:57338069-57337591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 333

               
               
               Conread position:4-465
               
               
               Cow position:chr2:65936113-65936594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-469
               
               
               Cow position:chr2:44477720-44477238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-470
               
               
               Cow position:chr2:245785-246268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-485
               
               
               Cow position:chr2:57053674-57053177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:5-363
               
               
               Cow position:chr2:48360059-48359690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 167

               
               
               Conread position:5-368
               
               
               Cow position:chr2:62816264-62815903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 145

               
               
               Conread position:5-456
               
               
               Cow position:chr2:2205699-2206167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 441

               
               
               Conread position:5-465
               
               
               Cow position:chr2:16306191-16305730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:6-461
               
               
               Cow position:chr2:70709650-70709182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:7-465
               
               
               Cow position:chr2:7369781-7369310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:7-465
               
               
               Cow position:chr2:25027189-25027673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:15-465
               
               
               Cow position:chr2:10263318-10263782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 207

               
               
               Conread position:23-465
               
               
               Cow position:chr2:50325295-50324846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 13

               
               
               Conread position:24-465
               
               
               Cow position:chr2:11971203-11971645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):296, 15

               
               
               Conread position:25-465
               
               
               Cow position:chr2:50406078-50405630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 34

               
               
               Conread position:27-465
               
               
               Cow position:chr2:4385490-4385050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 64

               
               
               Conread position:29-464
               
               
               Cow position:chr2:11731968-11731515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 334

               
               
               Conread position:32-465
               
               
               Cow position:chr2:20896253-20896680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 89

               
               
               Conread position:33-465
               
               
               Cow position:chr2:52064839-52064389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:37-465
               
               
               Cow position:chr2:42330771-42331224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 40

               
               
               Conread position:41-465
               
               
               Cow position:chr2:55482118-55482549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 378

               
               
               Conread position:44-465
               
               
               Cow position:chr2:20890760-20891199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 178

               
               
               Conread position:44-465
               
               
               Cow position:chr2:67189663-67189224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 61

               
               
               Conread position:49-464
               
               
               Cow position:chr2:40455297-40454868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 184

               
               
               Conread position:57-465
               
               
               Cow position:chr2:36995778-36995391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):291, 62

               
               
               Conread position:70-383
               
               
               Cow position:chr2:66597079-66596752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:81-374
               
               
               Cow position:chr2:53972398-53972699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):198, 106

               
               
               Conread position:90-383
               
               
               Cow position:chr2:8747122-8747428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 133

               
               
               Conread position:108-465
               
               
               Cow position:chr2:28612084-28612453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):184, 91

               
               
               Conread position:108-465
               
               
               Cow position:chr2:60673818-60674194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 322

               
               
               Conread position:109-465
               
               
               Cow position:chr2:16023087-16023446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 83

               
               
               Conread position:109-465
               
               
               Cow position:chr2:26903774-26904146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 97

               
               
               Conread position:119-421
               
               
               Cow position:chr2:1846180-1846484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:122-465
               
               
               Cow position:chr2:11157135-11157492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:125-465
               
               
               Cow position:chr2:6640796-6640437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:131-465
               
               
               Cow position:chr2:35357975-35357624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):163, 108

               
               
               Conread position:138-465
               
               
               Cow position:chr2:34500440-34500786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:144-465
               
               
               Cow position:chr2:363096-363436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:146-374
               
               
               Cow position:chr2:58473704-58473940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:146-382
               
               
               Cow position:chr2:36048297-36048545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:148-465
               
               
               Cow position:chr2:12988072-12987752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):140, 41

               
               
               Conread position:148-465
               
               
               Cow position:chr2:81259140-81258811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):140, 50

               
               
               Conread position:156-465
               
               
               Cow position:chr2:280734-281061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 303

               
               
               Conread position:158-461
               
               
               Cow position:chr2:4923605-4923918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 161

               
               
               Conread position:159-465
               
               
               Cow position:chr2:32640899-32640573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:169-465
               
               
               Cow position:chr2:26872000-26871682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:171-450
               
               
               Cow position:chr2:12329572-12329283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:174-463
               
               
               Cow position:chr2:44988665-44988955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):170, 8

               
               
               Conread position:206-465
               
               
               Cow position:chr2:59423419-59423141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:224-465
               
               
               Cow position:chr2:48816159-48815898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr20:10867153-10867638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 199

               
               
               Conread position:1-465
               
               
               Cow position:chr20:23801523-23801039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr20:25332311-25332774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 18

               
               
               Conread position:1-465
               
               
               Cow position:chr20:27345335-27345796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 30

               
               
               Conread position:2-464
               
               
               Cow position:chr20:870375-870850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:2-465
               
               
               Cow position:chr20:14867752-14868217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:2-465
               
               
               Cow position:chr20:22696416-22696872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:3-465
               
               
               Cow position:chr20:8754226-8753763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:4-465
               
               
               Cow position:chr20:5537557-5537080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:4-465
               
               
               Cow position:chr20:12047143-12046663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:4-465
               
               
               Cow position:chr20:12435768-12436245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr20:13765525-13765046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:4-465
               
               
               Cow position:chr20:14721750-14722232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:4-465
               
               
               Cow position:chr20:15294596-15294133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 215

               
               
               Conread position:4-465
               
               
               Cow position:chr20:19440543-19440066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:4-465
               
               
               Cow position:chr20:27876110-27875632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:4-465
               
               
               Cow position:chr20:30430900-30430419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr20:30578516-30578039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr20:30688201-30687725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:4-465
               
               
               Cow position:chr20:35127299-35126815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 210

               
               
               Conread position:4-469
               
               
               Cow position:chr20:24542054-24541572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 329

               
               
               Conread position:5-421
               
               
               Cow position:chr20:16177137-16177561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 208

               
               
               Conread position:7-461
               
               
               Cow position:chr20:23467038-23467512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:17-464
               
               
               Cow position:chr20:7598243-7598702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 78

               
               
               Conread position:24-465
               
               
               Cow position:chr20:19424653-19424212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:31-383
               
               
               Cow position:chr20:20185357-20185002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:38-460
               
               
               Cow position:chr20:28280409-28279969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:56-465
               
               
               Cow position:chr20:33599009-33598592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 239

               
               
               Conread position:64-465
               
               
               Cow position:chr20:39881909-39881501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 275

               
               
               Conread position:78-461
               
               
               Cow position:chr20:28481150-28480752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:138-376
               
               
               Cow position:chr20:6014390-6014643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):103, 210

               
               
               Conread position:144-464
               
               
               Cow position:chr20:1535489-1535168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):156, 69

               
               
               Conread position:153-363
               
               
               Cow position:chr20:28756435-28756224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 62

               
               
               Conread position:171-465
               
               
               Cow position:chr20:8214810-8215118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:181-465
               
               
               Cow position:chr20:13794463-13794166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:213-465
               
               
               Cow position:chr20:6905932-6906203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-435
               
               
               Cow position:chr21:41966-41514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:1-465
               
               
               Cow position:chr21:1195281-1194805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:1-465
               
               
               Cow position:chr21:27031985-27031520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:1-465
               
               
               Cow position:chr21:27148810-27149295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 333

               
               
               Conread position:1-470
               
               
               Cow position:chr21:2513590-2513108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 23

               
               
               Conread position:2-465
               
               
               Cow position:chr21:22943359-22942876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 189

               
               
               Conread position:2-465
               
               
               Cow position:chr21:34072833-34073316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 367

               
               
               Conread position:3-368
               
               
               Cow position:chr21:24647559-24647193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:3-467
               
               
               Cow position:chr21:46291121-46290651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:324
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:4-363
               
               
               Cow position:chr21:2665399-2665771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:4-460
               
               
               Cow position:chr21:26699924-26700394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 389

               
               
               Conread position:4-463
               
               
               Cow position:chr21:37373965-37373488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr21:34902646-34903111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 20

               
               
               Conread position:4-465
               
               
               Cow position:chr21:4092074-4091598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 167

               
               
               Conread position:4-465
               
               
               Cow position:chr21:4482037-4481573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 266

               
               
               Conread position:4-465
               
               
               Cow position:chr21:5019886-5019406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:4-465
               
               
               Cow position:chr21:11291429-11290949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:4-465
               
               
               Cow position:chr21:26634418-26634897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:4-465
               
               
               Cow position:chr21:27068220-27068701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 268

               
               
               Conread position:4-465
               
               
               Cow position:chr21:27286185-27285709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 225

               
               
               Conread position:4-465
               
               
               Cow position:chr21:28615058-28614579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:4-465
               
               
               Cow position:chr21:32397310-32397791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr21:34656701-34656213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:4-465
               
               
               Cow position:chr21:36375729-36375253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 441

               
               
               Conread position:4-465
               
               
               Cow position:chr21:39225320-39225797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr21:44763221-44763696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr21:47648076-47647597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 210

               
               
               Conread position:4-470
               
               
               Cow position:chr21:2418941-2418461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:5-414
               
               
               Cow position:chr21:4078787-4078373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:5-464
               
               
               Cow position:chr21:7155071-7154598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:5-465
               
               
               Cow position:chr21:21171566-21172034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:8-465
               
               
               Cow position:chr21:4036982-4036513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:14-465
               
               
               Cow position:chr21:38024821-38024361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 100

               
               
               Conread position:15-465
               
               
               Cow position:chr21:21026210-21025733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:17-465
               
               
               Cow position:chr21:49091714-49092178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 102

               
               
               Conread position:22-467
               
               
               Cow position:chr21:4595893-4596346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 65

               
               
               Conread position:24-465
               
               
               Cow position:chr21:36978188-36978642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 92

               
               
               Conread position:25-465
               
               
               Cow position:chr21:28987853-28987404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 92

               
               
               Conread position:27-465
               
               
               Cow position:chr21:6966750-6967199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 162

               
               
               Conread position:31-465
               
               
               Cow position:chr21:3805639-3805186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 75

               
               
               Conread position:50-465
               
               
               Cow position:chr21:9894843-9894408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:87-465
               
               
               Cow position:chr21:4738334-4737925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):146, 80

               
               
               Conread position:91-349
               
               
               Cow position:chr21:34551498-34551763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:97-365
               
               
               Cow position:chr21:47976483-47976205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:97-465
               
               
               Cow position:chr21:27610095-27610481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 375

               
               
               Conread position:119-465
               
               
               Cow position:chr21:29949340-29949703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:138-465
               
               
               Cow position:chr21:28258021-28257679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):138, 104

               
               
               Conread position:154-464
               
               
               Cow position:chr21:31640495-31640175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:154-465
               
               
               Cow position:chr21:11508200-11507871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):100, 108

               
               
               Conread position:159-465
               
               
               Cow position:chr21:40269087-40269409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:163-465
               
               
               Cow position:chr21:362312-361989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:171-427
               
               
               Cow position:chr21:35403319-35403586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:171-464
               
               
               Cow position:chr21:31584-31284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:226-465
               
               
               Cow position:chr21:469416-469165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 209

               
               
               Conread position:229-465
               
               
               Cow position:chr21:11470239-11470020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):189, 9

               
               
               Conread position:234-465
               
               
               Cow position:chr21:30564175-30563927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:298-465
               
               
               Cow position:chr21:34158474-34158644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:1-358
               
               
               Cow position:chr22:10933655-10934021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 177

               
               
               Conread position:1-363
               
               
               Cow position:chr22:11035859-11035497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:1-363
               
               
               Cow position:chr22:13775075-13774711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 184

               
               
               Conread position:1-459
               
               
               Cow position:chr22:21591995-21591521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:1-465
               
               
               Cow position:chr22:11609212-11608730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:1-465
               
               
               Cow position:chr22:28555597-28556080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-382
               
               
               Cow position:chr22:10620835-10620441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:2-421
               
               
               Cow position:chr22:3297165-3297592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 192

               
               
               Conread position:2-463
               
               
               Cow position:chr22:841498-841017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:2-464
               
               
               Cow position:chr22:15871368-15870885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:2-465
               
               
               Cow position:chr22:2390970-2391445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:2-465
               
               
               Cow position:chr22:13208966-13208502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:2-465
               
               
               Cow position:chr22:36544385-36544862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:3-383
               
               
               Cow position:chr22:7279110-7278721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:3-465
               
               
               Cow position:chr22:94846-95325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:3-465
               
               
               Cow position:chr22:36585274-36585755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 0

               
               
               Conread position:3-465
               
               
               Cow position:chr22:44605374-44605849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:4-337
               
               
               Cow position:chr22:34822575-34822908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:4-368
               
               
               Cow position:chr22:1482981-1482606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:4-369
               
               
               Cow position:chr22:34604787-34604411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-375
               
               
               Cow position:chr22:3434397-3434763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 220

               
               
               Conread position:4-383
               
               
               Cow position:chr22:10907633-10908021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-451
               
               
               Cow position:chr22:39039411-39039872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 26

               
               
               Conread position:4-463
               
               
               Cow position:chr22:6334378-6333905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:4-465
               
               
               Cow position:chr22:558136-558615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr22:980856-980377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 145

               
               
               Conread position:4-465
               
               
               Cow position:chr22:1324694-1324224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:4-465
               
               
               Cow position:chr22:1518461-1518941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:4-465
               
               
               Cow position:chr22:8132221-8132695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr22:8735151-8735627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:4-465
               
               
               Cow position:chr22:11802481-11802962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr22:13722175-13722645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:4-465
               
               
               Cow position:chr22:13767893-13767426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:4-465
               
               
               Cow position:chr22:18029842-18029361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 150

               
               
               Conread position:4-465
               
               
               Cow position:chr22:18614842-18614373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 159

               
               
               Conread position:4-465
               
               
               Cow position:chr22:20238267-20238747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr22:28784686-28784205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 329

               
               
               Conread position:4-465
               
               
               Cow position:chr22:29854422-29853946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr22:30676163-30676621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr22:32205627-32205156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:4-465
               
               
               Cow position:chr22:34170909-34170428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr22:35669097-35669578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr22:37536907-37537386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:4-465
               
               
               Cow position:chr22:39466945-39467422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:4-465
               
               
               Cow position:chr22:40372975-40372498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:4-465
               
               
               Cow position:chr22:42993743-42993263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:4-465
               
               
               Cow position:chr22:44100774-44101241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:4-465
               
               
               Cow position:chr22:46579161-46579629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 31

               
               
               Conread position:4-467
               
               
               Cow position:chr22:2562178-2562676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:5-359
               
               
               Cow position:chr22:30067901-30068270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 212

               
               
               Conread position:5-465
               
               
               Cow position:chr22:34596300-34595828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:5-465
               
               
               Cow position:chr22:43046799-43047266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:6-465
               
               
               Cow position:chr22:29038236-29037766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:6-465
               
               
               Cow position:chr22:44366912-44367389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-465
               
               
               Cow position:chr22:44399001-44398528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 312

               
               
               Conread position:7-383
               
               
               Cow position:chr22:50604-50213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:7-462
               
               
               Cow position:chr22:11780409-11780874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:7-463
               
               
               Cow position:chr22:17325917-17326390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:7-465
               
               
               Cow position:chr22:27307402-27307878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:9-465
               
               
               Cow position:chr22:23799466-23799926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:15-467
               
               
               Cow position:chr22:38552401-38551942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 19

               
               
               Conread position:16-466
               
               
               Cow position:chr22:43303715-43304169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:17-465
               
               
               Cow position:chr22:36858998-36859459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 23

               
               
               Conread position:20-368
               
               
               Cow position:chr22:35918607-35918255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):268, 172

               
               
               Conread position:21-464
               
               
               Cow position:chr22:15309408-15309864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 201

               
               
               Conread position:24-360
               
               
               Cow position:chr22:35935972-35935647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):257, 83

               
               
               Conread position:27-465
               
               
               Cow position:chr22:3275805-3276262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 0

               
               
               Conread position:33-446
               
               
               Cow position:chr22:9274900-9274489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):255, 51

               
               
               Conread position:54-465
               
               
               Cow position:chr22:5888662-5889093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 258

               
               
               Conread position:69-465
               
               
               Cow position:chr22:10549145-10548733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 137

               
               
               Conread position:121-465
               
               
               Cow position:chr22:11806303-11806661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:138-465
               
               
               Cow position:chr22:36573584-36573934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:142-467
               
               
               Cow position:chr22:43767916-43768262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):146, 284

               
               
               Conread position:158-465
               
               
               Cow position:chr22:30172623-30172314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:164-465
               
               
               Cow position:chr22:24429628-24429949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:190-465
               
               
               Cow position:chr22:2849214-2849507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:190-465
               
               
               Cow position:chr22:12755358-12755078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 30

               
               
               Conread position:224-464
               
               
               Cow position:chr22:41417756-41418014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:1-465
               
               
               Cow position:chr23:1049961-1050445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:1-465
               
               
               Cow position:chr23:2024520-2024993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr23:11781360-11780877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 211

               
               
               Conread position:1-468
               
               
               Cow position:chr23:2438742-2439222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 390

               
               
               Conread position:1-470
               
               
               Cow position:chr23:3878527-3879003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 162

               
               
               Conread position:2-450
               
               
               Cow position:chr23:16612236-16612698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 32

               
               
               Conread position:2-465
               
               
               Cow position:chr23:30238827-30238356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:4-368
               
               
               Cow position:chr23:38583506-38583143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:4-421
               
               
               Cow position:chr23:14971386-14971817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 198

               
               
               Conread position:4-465
               
               
               Cow position:chr23:1011268-1011751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:4-465
               
               
               Cow position:chr23:2760461-2759989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:4-465
               
               
               Cow position:chr23:3708963-3708489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:4-465
               
               
               Cow position:chr23:4308615-4309096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 315

               
               
               Conread position:4-465
               
               
               Cow position:chr23:4436216-4435742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr23:7313531-7314012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr23:14960389-14960867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr23:19492119-19491638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr23:20153660-20154133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:4-465
               
               
               Cow position:chr23:22144740-22145217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:4-465
               
               
               Cow position:chr23:25350918-25350437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr23:28221268-28220788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr23:36028819-36029300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr23:37199956-37200435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 195

               
               
               Conread position:4-470
               
               
               Cow position:chr23:4891253-4890770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:5-465
               
               
               Cow position:chr23:16056301-16055848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:7-383
               
               
               Cow position:chr23:4516099-4515708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:7-465
               
               
               Cow position:chr23:5625020-5625487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:10-465
               
               
               Cow position:chr23:11713303-11713778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:11-464
               
               
               Cow position:chr23:3452200-3452651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:315
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:20-465
               
               
               Cow position:chr23:15179612-15179149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 186

               
               
               Conread position:30-465
               
               
               Cow position:chr23:609266-608801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:31-465
               
               
               Cow position:chr23:8099821-8099376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:65-465
               
               
               Cow position:chr23:13513563-13513159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):228, 41

               
               
               Conread position:78-465
               
               
               Cow position:chr23:37652400-37651997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 360

               
               
               Conread position:98-465
               
               
               Cow position:chr23:30635382-30635753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 108

               
               
               Conread position:99-448
               
               
               Cow position:chr23:41568641-41568290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:110-465
               
               
               Cow position:chr23:7043463-7043836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 49

               
               
               Conread position:125-465
               
               
               Cow position:chr23:31165268-31164908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:131-465
               
               
               Cow position:chr23:32350327-32350677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:132-486
               
               
               Cow position:chr23:15040155-15040513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):141, 29

               
               
               Conread position:137-465
               
               
               Cow position:chr23:34256573-34256914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):141, 69

               
               
               Conread position:147-464
               
               
               Cow position:chr23:7357649-7357322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):141, 73

               
               
               Conread position:153-465
               
               
               Cow position:chr23:617064-617393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):135, 80

               
               
               Conread position:159-465
               
               
               Cow position:chr23:2318772-2319092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:192-465
               
               
               Cow position:chr23:21792096-21792388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr24:19884949-19884465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-358
               
               
               Cow position:chr24:41231259-41230899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):277, 99

               
               
               Conread position:2-383
               
               
               Cow position:chr24:22818496-22818102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:2-465
               
               
               Cow position:chr24:38004286-38004768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 162

               
               
               Conread position:4-338
               
               
               Cow position:chr24:14377004-14377348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:4-465
               
               
               Cow position:chr24:6440405-6439924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 426

               
               
               Conread position:4-465
               
               
               Cow position:chr24:11691347-11691825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr24:14195210-14195687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr24:16081835-16082315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 445

               
               
               Conread position:4-465
               
               
               Cow position:chr24:20367018-20366532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 426

               
               
               Conread position:4-465
               
               
               Cow position:chr24:23093392-23093852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr24:23096130-23096590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr24:40467765-40468233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:4-465
               
               
               Cow position:chr24:40551276-40550798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr24:41005132-41004667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 26

               
               
               Conread position:4-466
               
               
               Cow position:chr24:14759533-14759057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 462

               
               
               Conread position:4-470
               
               
               Cow position:chr24:13234892-13234406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:5-465
               
               
               Cow position:chr24:36724718-36724226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:6-364
               
               
               Cow position:chr24:6463620-6463259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 233

               
               
               Conread position:6-437
               
               
               Cow position:chr24:14723089-14722659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:7-375
               
               
               Cow position:chr24:33936552-33936188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:7-465
               
               
               Cow position:chr24:6657607-6658080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 183

               
               
               Conread position:7-466
               
               
               Cow position:chr24:18267838-18268313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:8-465
               
               
               Cow position:chr24:16559656-16560132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:16-465
               
               
               Cow position:chr24:11150485-11150951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 190

               
               
               Conread position:16-465
               
               
               Cow position:chr24:42583133-42583591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:17-465
               
               
               Cow position:chr24:19836046-19835579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:72-465
               
               
               Cow position:chr24:6472663-6472261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:113-462
               
               
               Cow position:chr24:6678583-6678219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:132-464
               
               
               Cow position:chr24:4413034-4413380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):156, 74

               
               
               Conread position:146-465
               
               
               Cow position:chr24:29086014-29085681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:158-465
               
               
               Cow position:chr24:14276505-14276826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 62

               
               
               Conread position:158-465
               
               
               Cow position:chr24:17454633-17454959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:162-469
               
               
               Cow position:chr24:17312238-17312553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:170-425
               
               
               Cow position:chr24:12267311-12267048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:181-467
               
               
               Cow position:chr24:30895263-30894961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 247

               
               
               Conread position:194-472
               
               
               Cow position:chr24:33029641-33029353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 139

               
               
               Conread position:199-467
               
               
               Cow position:chr24:16647470-16647752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:291-470
               
               
               Cow position:chr24:19673943-19673759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 170

               
               
               Conread position:294-465
               
               
               Cow position:chr24:18212718-18212538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr25:15366500-15366037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:1-465
               
               
               Cow position:chr25:18489375-18488889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:1-465
               
               
               Cow position:chr25:19923169-19922687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:1-465
               
               
               Cow position:chr25:20632245-20631764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 205

               
               
               Conread position:1-477
               
               
               Cow position:chr25:28862222-28861735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 139

               
               
               Conread position:2-460
               
               
               Cow position:chr25:12835215-12835692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:3-465
               
               
               Cow position:chr25:29359381-29358901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 205

               
               
               Conread position:4-375
               
               
               Cow position:chr25:13785202-13784817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 235

               
               
               Conread position:4-395
               
               
               Cow position:chr25:11665022-11664614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:4-461
               
               
               Cow position:chr25:41308528-41308987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:305
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:4-465
               
               
               Cow position:chr25:13352320-13351838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 427

               
               
               Conread position:4-465
               
               
               Cow position:chr25:14537312-14537787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 343

               
               
               Conread position:4-465
               
               
               Cow position:chr25:17656995-17656537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:4-465
               
               
               Cow position:chr25:18191039-18191515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:4-465
               
               
               Cow position:chr25:18887119-18887603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:4-465
               
               
               Cow position:chr25:19337972-19338452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr25:20772982-20773469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr25:26900886-26900409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 205

               
               
               Conread position:4-465
               
               
               Cow position:chr25:26930219-26929732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:4-465
               
               
               Cow position:chr25:27019981-27020457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr25:34505464-34505944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:4-466
               
               
               Cow position:chr25:11042971-11042494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:5-339
               
               
               Cow position:chr25:10136046-10135712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 32

               
               
               Conread position:5-487
               
               
               Cow position:chr25:26456046-26455570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:7-465
               
               
               Cow position:chr25:29803432-29803907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:12-465
               
               
               Cow position:chr25:12939833-12940301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:17-456
               
               
               Cow position:chr25:11930207-11930636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:22-434
               
               
               Cow position:chr25:18250315-18250758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:38-463
               
               
               Cow position:chr25:40138486-40138921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:119-465
               
               
               Cow position:chr25:26354838-26354474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 335

               
               
               Conread position:131-464
               
               
               Cow position:chr25:25509193-25508844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 72

               
               
               Conread position:132-420
               
               
               Cow position:chr25:21966465-21966164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):152, 55

               
               
               Conread position:132-465
               
               
               Cow position:chr25:36635237-36635593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:172-465
               
               
               Cow position:chr25:39555396-39555703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:190-459
               
               
               Cow position:chr25:7577106-7577392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:223-465
               
               
               Cow position:chr25:22149950-22149694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr26:17429895-17430365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 371

               
               
               Conread position:2-368
               
               
               Cow position:chr26:9483687-9483313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:2-465
               
               
               Cow position:chr26:14365624-14366089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:2-465
               
               
               Cow position:chr26:32051156-32051608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:4-383
               
               
               Cow position:chr26:33878078-33877694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:4-463
               
               
               Cow position:chr26:6497008-6497476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:4-465
               
               
               Cow position:chr26:367237-366756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr26:899009-898540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 376

               
               
               Conread position:4-465
               
               
               Cow position:chr26:2349567-2350047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:4-465
               
               
               Cow position:chr26:2417791-2418272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr26:9841799-9842265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 182

               
               
               Conread position:4-465
               
               
               Cow position:chr26:12585932-12586403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:4-465
               
               
               Cow position:chr26:17394287-17394764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr26:23889016-23888540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:4-465
               
               
               Cow position:chr26:30586741-30587221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 450

               
               
               Conread position:4-465
               
               
               Cow position:chr26:30785379-30784896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr26:34014300-34013814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr26:35561810-35561332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:7-465
               
               
               Cow position:chr26:19348893-19349367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:16-383
               
               
               Cow position:chr26:6792798-6792426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:57-383
               
               
               Cow position:chr26:3703588-3703254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 115

               
               
               Conread position:133-463
               
               
               Cow position:chr26:35335722-35336068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 27

               
               
               Conread position:159-464
               
               
               Cow position:chr26:4602703-4603024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:176-465
               
               
               Cow position:chr26:6080749-6081038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:214-465
               
               
               Cow position:chr26:21008565-21008294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1-352
               
               
               Cow position:chr27:1535748-1535394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:1-386
               
               
               Cow position:chr27:25801611-25802009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 169

               
               
               Conread position:1-465
               
               
               Cow position:chr27:15273511-15273991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:2-341
               
               
               Cow position:chr27:25965386-25965751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:2-348
               
               
               Cow position:chr27:12262878-12263217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:2-363
               
               
               Cow position:chr27:28923568-28923174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 259

               
               
               Conread position:2-450
               
               
               Cow position:chr27:23294112-23293663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:4-383
               
               
               Cow position:chr27:27729914-27730297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):284, 15

               
               
               Conread position:4-465
               
               
               Cow position:chr27:3991573-3991087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:4-465
               
               
               Cow position:chr27:8200366-8199889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:4-465
               
               
               Cow position:chr27:11433682-11433206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr27:13900456-13899984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 192

               
               
               Conread position:4-465
               
               
               Cow position:chr27:15034533-15035016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr27:16031838-16032311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:4-465
               
               
               Cow position:chr27:19524153-19524631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr27:22742827-22743301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr27:26327621-26327145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr27:26552863-26553348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:4-465
               
               
               Cow position:chr27:27289060-27288587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 337

               
               
               Conread position:4-465
               
               
               Cow position:chr27:27665570-27665086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:7-375
               
               
               Cow position:chr27:5913495-5913112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:7-465
               
               
               Cow position:chr27:15634776-15635250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:8-465
               
               
               Cow position:chr27:13352852-13352395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 243

               
               
               Conread position:17-465
               
               
               Cow position:chr27:9990666-9991125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 172

               
               
               Conread position:45-456
               
               
               Cow position:chr27:25059636-25059230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:53-362
               
               
               Cow position:chr27:30536502-30536194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 169

               
               
               Conread position:147-363
               
               
               Cow position:chr27:27235552-27235340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:151-465
               
               
               Cow position:chr27:66392-66725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:169-463
               
               
               Cow position:chr27:25884507-25884828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 264

               
               
               Conread position:202-464
               
               
               Cow position:chr27:1211731-1211450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:208-465
               
               
               Cow position:chr27:6374908-6375167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:226-465
               
               
               Cow position:chr27:4802849-4803107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:227-465
               
               
               Cow position:chr27:21453767-21453510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr28:5210730-5210249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr28:8381655-8381174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 29

               
               
               Conread position:1-465
               
               
               Cow position:chr28:8718363-8718832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr28:33254931-33254447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-351
               
               
               Cow position:chr28:28441361-28441010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:2-461
               
               
               Cow position:chr28:21323684-21323208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 209

               
               
               Conread position:2-464
               
               
               Cow position:chr28:23024790-23024345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:2-465
               
               
               Cow position:chr28:29760020-29760499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:2-470
               
               
               Cow position:chr28:22579346-22578857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:3-464
               
               
               Cow position:chr28:917948-918442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:323
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:3-464
               
               
               Cow position:chr28:933640-934135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:4-363
               
               
               Cow position:chr28:22230723-22231088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 230

               
               
               Conread position:4-450
               
               
               Cow position:chr28:30534456-30534921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 458

               
               
               Conread position:4-456
               
               
               Cow position:chr28:21568512-21568042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:4-460
               
               
               Cow position:chr28:1955974-1955501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr28:24885466-24884984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr28:1165280-1165760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:4-465
               
               
               Cow position:chr28:1215225-1215703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr28:1384833-1385304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:4-465
               
               
               Cow position:chr28:2087070-2086599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 192

               
               
               Conread position:4-465
               
               
               Cow position:chr28:5636435-5635966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 202

               
               
               Conread position:4-465
               
               
               Cow position:chr28:10302444-10301969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 25

               
               
               Conread position:4-465
               
               
               Cow position:chr28:12407608-12408085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr28:21379142-21378664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 188

               
               
               Conread position:4-465
               
               
               Cow position:chr28:23310708-23311178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr28:25702301-25702759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 27

               
               
               Conread position:4-465
               
               
               Cow position:chr28:29822793-29822330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr28:34582529-34582048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr28:34596852-34596385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 388

               
               
               Conread position:4-485
               
               
               Cow position:chr28:33639175-33638676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 482

               
               
               Conread position:5-465
               
               
               Cow position:chr28:15686011-15685541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:8-465
               
               
               Cow position:chr28:7004609-7004134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 230

               
               
               Conread position:9-465
               
               
               Cow position:chr28:30960214-30959743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:17-383
               
               
               Cow position:chr28:18517553-18517931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 246

               
               
               Conread position:23-465
               
               
               Cow position:chr28:17371979-17372410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:25-461
               
               
               Cow position:chr28:32303634-32304101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 189

               
               
               Conread position:27-463
               
               
               Cow position:chr28:25040859-25041302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 25

               
               
               Conread position:27-465
               
               
               Cow position:chr28:7829074-7828626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 92

               
               
               Conread position:33-465
               
               
               Cow position:chr28:15352524-15352955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:48-465
               
               
               Cow position:chr28:12152920-12152487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:55-465
               
               
               Cow position:chr28:22040840-22041265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 178

               
               
               Conread position:68-463
               
               
               Cow position:chr28:24670141-24669728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 185

               
               
               Conread position:68-465
               
               
               Cow position:chr28:3013427-3013839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 15

               
               
               Conread position:94-467
               
               
               Cow position:chr28:30920769-30921147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:105-465
               
               
               Cow position:chr28:8785943-8785564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 297

               
               
               Conread position:108-465
               
               
               Cow position:chr28:26423761-26424127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):171, 95

               
               
               Conread position:123-465
               
               
               Cow position:chr28:25675513-25675879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):165, 199

               
               
               Conread position:142-465
               
               
               Cow position:chr28:5568617-5568287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):143, 80

               
               
               Conread position:144-439
               
               
               Cow position:chr28:5815842-5815539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):139, 80

               
               
               Conread position:153-465
               
               
               Cow position:chr28:30806229-30805898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:181-465
               
               
               Cow position:chr28:34730362-34730059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:186-466
               
               
               Cow position:chr28:10293893-10293602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):100, 47

               
               
               Conread position:194-465
               
               
               Cow position:chr28:1460523-1460233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:211-465
               
               
               Cow position:chr28:22258745-22259016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 173

               
               
               Conread position:1-465
               
               
               Cow position:chr29:45881-46360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:1-465
               
               
               Cow position:chr29:8624617-8625090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 29

               
               
               Conread position:1-465
               
               
               Cow position:chr29:13019267-13018792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:1-465
               
               
               Cow position:chr29:16346785-16346302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 272

               
               
               Conread position:1-465
               
               
               Cow position:chr29:19620689-19621165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 29

               
               
               Conread position:2-366
               
               
               Cow position:chr29:42806304-42805929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:2-465
               
               
               Cow position:chr29:132098-131623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:4-462
               
               
               Cow position:chr29:21430281-21430754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-463
               
               
               Cow position:chr29:608057-608528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr29:15624122-15624605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 322

               
               
               Conread position:4-464
               
               
               Cow position:chr29:15995803-15996282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr29:107633-107168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 124

               
               
               Conread position:4-465
               
               
               Cow position:chr29:408686-409160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr29:5785389-5784908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:6263424-6263905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr29:7428535-7429020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 321

               
               
               Conread position:4-465
               
               
               Cow position:chr29:7846967-7846490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr29:10644835-10645309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr29:13057328-13056846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:4-465
               
               
               Cow position:chr29:13899242-13898761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:13923083-13922602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:15260413-15260894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:15966977-15967458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:16036837-16037310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 329

               
               
               Conread position:4-465
               
               
               Cow position:chr29:16171531-16172011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:4-465
               
               
               Cow position:chr29:19525713-19526190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:4-465
               
               
               Cow position:chr29:19890149-19889675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr29:23979287-23978804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:31095010-31095490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 211

               
               
               Conread position:4-465
               
               
               Cow position:chr29:32557169-32557650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:35274443-35274912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 388

               
               
               Conread position:4-465
               
               
               Cow position:chr29:39424562-39425043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr29:40470988-40470520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:4-465
               
               
               Cow position:chr29:40500412-40500914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 350

               
               
               Conread position:4-465
               
               
               Cow position:chr29:45207088-45206609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 186

               
               
               Conread position:4-467
               
               
               Cow position:chr29:39077140-39077618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:5-358
               
               
               Cow position:chr29:6219224-6219574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:5-363
               
               
               Cow position:chr29:14500441-14500070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:5-464
               
               
               Cow position:chr29:9640200-9640679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:5-465
               
               
               Cow position:chr29:253492-253017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:5-465
               
               
               Cow position:chr29:6873297-6873774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 202

               
               
               Conread position:5-465
               
               
               Cow position:chr29:17407714-17407227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-465
               
               
               Cow position:chr29:32961891-32961414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:6-465
               
               
               Cow position:chr29:27260547-27261018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:7-372
               
               
               Cow position:chr29:32288957-32288583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:8-392
               
               
               Cow position:chr29:648392-648000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:8-465
               
               
               Cow position:chr29:26162264-26162735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 130

               
               
               Conread position:10-465
               
               
               Cow position:chr29:25929946-25930417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 430

               
               
               Conread position:16-465
               
               
               Cow position:chr29:7750292-7750751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 20

               
               
               Conread position:16-465
               
               
               Cow position:chr29:10845520-10845054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 191

               
               
               Conread position:18-465
               
               
               Cow position:chr29:5980158-5980618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 189

               
               
               Conread position:25-461
               
               
               Cow position:chr29:13075966-13075503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:66-465
               
               
               Cow position:chr29:18524219-18524623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 21

               
               
               Conread position:69-465
               
               
               Cow position:chr29:5960383-5959971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 137

               
               
               Conread position:70-465
               
               
               Cow position:chr29:21267174-21266787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):151, 80

               
               
               Conread position:131-465
               
               
               Cow position:chr29:10021877-10022230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:152-428
               
               
               Cow position:chr29:9330404-9330114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:161-465
               
               
               Cow position:chr29:1477587-1477259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:169-465
               
               
               Cow position:chr29:5237428-5237117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):119, 188

               
               
               Conread position:198-465
               
               
               Cow position:chr29:31123218-31122933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:1-342
               
               
               Cow position:chr3:7326752-7326413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 34

               
               
               Conread position:1-460
               
               
               Cow position:chr3:18861936-18861457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-463
               
               
               Cow position:chr3:35885844-35886330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 29

               
               
               Conread position:1-463
               
               
               Cow position:chr3:40102310-40102777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 20

               
               
               Conread position:1-463
               
               
               Cow position:chr3:57742019-57741543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:1-465
               
               
               Cow position:chr3:596614-596143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:1-465
               
               
               Cow position:chr3:10243147-10242671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:1-465
               
               
               Cow position:chr3:18814000-18813522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:1-465
               
               
               Cow position:chr3:19946736-19946260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 229

               
               
               Conread position:1-465
               
               
               Cow position:chr3:24443601-24444085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr3:37971545-37971064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr3:70889769-70889299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 30

               
               
               Conread position:1-465
               
               
               Cow position:chr3:73303998-73303534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:1-467
               
               
               Cow position:chr3:3983129-3982643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 429

               
               
               Conread position:2-465
               
               
               Cow position:chr3:19782189-19781715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 91

               
               
               Conread position:2-470
               
               
               Cow position:chr3:38496270-38495791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 210

               
               
               Conread position:3-351
               
               
               Cow position:chr3:38254235-38253878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:3-463
               
               
               Cow position:chr3:50124507-50124980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 17

               
               
               Conread position:4-334
               
               
               Cow position:chr3:64812953-64813294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:4-363
               
               
               Cow position:chr3:53048289-53048666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:4-363
               
               
               Cow position:chr3:61676186-61675820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:4-456
               
               
               Cow position:chr3:21004306-21003840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:4-460
               
               
               Cow position:chr3:49003661-49003185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-463
               
               
               Cow position:chr3:56337461-56337943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:2708380-2708852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:4-465
               
               
               Cow position:chr3:3525518-3525051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:4-465
               
               
               Cow position:chr3:7156225-7156701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-465
               
               
               Cow position:chr3:13036180-13035699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:16225371-16224903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr3:18113195-18113677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:19754471-19754945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr3:19798662-19799143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:19941406-19940939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:4-465
               
               
               Cow position:chr3:26743381-26743862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:27865665-27865189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:4-465
               
               
               Cow position:chr3:29574630-29575103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr3:30616447-30616925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:4-465
               
               
               Cow position:chr3:30989754-30990235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:32620551-32621032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:40337653-40338130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:4-465
               
               
               Cow position:chr3:41082657-41082183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr3:46505056-46504580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:4-465
               
               
               Cow position:chr3:48525237-48524748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr3:48602743-48602267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr3:49563500-49563024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:64025640-64026120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:66622706-66622228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr3:66969390-66969871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:68697477-68697958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:68871259-68871739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:72389452-72388968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 206

               
               
               Conread position:4-465
               
               
               Cow position:chr3:75039355-75039838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr3:78024942-78025421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:5-358
               
               
               Cow position:chr3:3790127-3789765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:5-464
               
               
               Cow position:chr3:4030237-4029747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:6-421
               
               
               Cow position:chr3:25689136-25688732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 8

               
               
               Conread position:7-465
               
               
               Cow position:chr3:14862693-14862211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 343

               
               
               Conread position:7-465
               
               
               Cow position:chr3:49135073-49135547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:7-465
               
               
               Cow position:chr3:49542714-49543193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 236

               
               
               Conread position:8-465
               
               
               Cow position:chr3:27920934-27920460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:16-465
               
               
               Cow position:chr3:13724239-13724705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 19

               
               
               Conread position:17-465
               
               
               Cow position:chr3:46858808-46859275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:25-465
               
               
               Cow position:chr3:77366595-77367048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:30-465
               
               
               Cow position:chr3:2871260-2870806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 399

               
               
               Conread position:31-467
               
               
               Cow position:chr3:25998683-25999134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):256, 48

               
               
               Conread position:45-461
               
               
               Cow position:chr3:75185803-75185371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:54-451
               
               
               Cow position:chr3:49742903-49742486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:55-456
               
               
               Cow position:chr3:64214657-64215063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 32

               
               
               Conread position:57-465
               
               
               Cow position:chr3:19590273-19590700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 149

               
               
               Conread position:59-311
               
               
               Cow position:chr3:77452719-77452475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:69-368
               
               
               Cow position:chr3:32361849-32361544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):134, 8

               
               
               Conread position:76-375
               
               
               Cow position:chr3:34040158-34040468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):212, 130

               
               
               Conread position:76-465
               
               
               Cow position:chr3:15053298-15053698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 43

               
               
               Conread position:77-486
               
               
               Cow position:chr3:27583260-27582849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):214, 66

               
               
               Conread position:78-465
               
               
               Cow position:chr3:36862039-36862439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 235

               
               
               Conread position:80-364
               
               
               Cow position:chr3:18205246-18205539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):201, 50

               
               
               Conread position:97-342
               
               
               Cow position:chr3:77426101-77425861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):149, 101

               
               
               Conread position:98-447
               
               
               Cow position:chr3:33325516-33325146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:105-465
               
               
               Cow position:chr3:46752021-46751639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:108-464
               
               
               Cow position:chr3:63001223-63001594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):142, 63

               
               
               Conread position:108-465
               
               
               Cow position:chr3:21180312-21180685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 98

               
               
               Conread position:114-465
               
               
               Cow position:chr3:13477724-13477358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:119-465
               
               
               Cow position:chr3:28670463-28670099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 114

               
               
               Conread position:119-465
               
               
               Cow position:chr3:37644662-37644303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):169, 60

               
               
               Conread position:123-465
               
               
               Cow position:chr3:54773295-54772957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):226, 48

               
               
               Conread position:128-352
               
               
               Cow position:chr3:80479131-80479353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 111

               
               
               Conread position:131-465
               
               
               Cow position:chr3:21103101-21103438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:136-465
               
               
               Cow position:chr3:4288441-4288102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:143-465
               
               
               Cow position:chr3:5951836-5952175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 226

               
               
               Conread position:144-467
               
               
               Cow position:chr3:66044601-66044930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):138, 54

               
               
               Conread position:148-465
               
               
               Cow position:chr3:30329786-30330126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:157-467
               
               
               Cow position:chr3:15657204-15657528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 8

               
               
               Conread position:159-465
               
               
               Cow position:chr3:2919968-2919636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:159-465
               
               
               Cow position:chr3:58035353-58035042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:165-349
               
               
               Cow position:chr3:69434706-69434901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:224-465
               
               
               Cow position:chr3:64013560-64013821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1-349
               
               
               Cow position:chr4:43869749-43869393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:1-389
               
               
               Cow position:chr4:36811626-36811250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:1-465
               
               
               Cow position:chr4:6488071-6488546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 51

               
               
               Conread position:1-465
               
               
               Cow position:chr4:25597188-25597665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 205

               
               
               Conread position:1-465
               
               
               Cow position:chr4:41957061-41956585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 29

               
               
               Conread position:1-465
               
               
               Cow position:chr4:43317349-43317829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 331

               
               
               Conread position:1-467
               
               
               Cow position:chr4:38931667-38931178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:327
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:2-421
               
               
               Cow position:chr4:59356557-59356970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):286, 19

               
               
               Conread position:2-456
               
               
               Cow position:chr4:60044751-60045225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:2-465
               
               
               Cow position:chr4:21973362-21973847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:2-465
               
               
               Cow position:chr4:23890055-23890533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:2-465
               
               
               Cow position:chr4:44900575-44900093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:3-465
               
               
               Cow position:chr4:9483527-9483990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:4-361
               
               
               Cow position:chr4:23305044-23305403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 186

               
               
               Conread position:4-383
               
               
               Cow position:chr4:14141413-14141024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:4-421
               
               
               Cow position:chr4:12606584-12607015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:4-461
               
               
               Cow position:chr4:10055244-10054779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 24

               
               
               Conread position:4-462
               
               
               Cow position:chr4:25877698-25877236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:4-464
               
               
               Cow position:chr4:3069224-3068759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr4:6863936-6864410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 26

               
               
               Conread position:4-464
               
               
               Cow position:chr4:17034206-17034681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 226

               
               
               Conread position:4-464
               
               
               Cow position:chr4:44594069-44594540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-464
               
               
               Cow position:chr4:61241577-61241103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr4:1047956-1048443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 235

               
               
               Conread position:4-465
               
               
               Cow position:chr4:3355665-3356145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 195

               
               
               Conread position:4-465
               
               
               Cow position:chr4:4418345-4417871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:4-465
               
               
               Cow position:chr4:5611697-5612176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 421

               
               
               Conread position:4-465
               
               
               Cow position:chr4:6266917-6267397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr4:16061577-16061096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr4:16640907-16640429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr4:21361819-21361349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr4:27336233-27335753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr4:28174785-28175262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:4-465
               
               
               Cow position:chr4:41473546-41474025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr4:41961193-41960721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 31

               
               
               Conread position:4-465
               
               
               Cow position:chr4:58622230-58622711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-469
               
               
               Cow position:chr4:57986315-57985829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 377

               
               
               Conread position:4-470
               
               
               Cow position:chr4:11108775-11109249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:5-465
               
               
               Cow position:chr4:963036-963515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 414

               
               
               Conread position:5-465
               
               
               Cow position:chr4:34182409-34182878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:5-465
               
               
               Cow position:chr4:68109269-68109730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:7-372
               
               
               Cow position:chr4:34176690-34177069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:7-465
               
               
               Cow position:chr4:15459112-15459590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:14-465
               
               
               Cow position:chr4:2115714-2115252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:14-465
               
               
               Cow position:chr4:39234593-39235050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 126

               
               
               Conread position:17-463
               
               
               Cow position:chr4:6568661-6568201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 240

               
               
               Conread position:21-465
               
               
               Cow position:chr4:10883820-10883358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 188

               
               
               Conread position:21-465
               
               
               Cow position:chr4:56961219-56960757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 178

               
               
               Conread position:26-465
               
               
               Cow position:chr4:29033250-29032806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:65-463
               
               
               Cow position:chr4:67468215-67467817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:77-465
               
               
               Cow position:chr4:54971665-54971267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):208, 10

               
               
               Conread position:112-465
               
               
               Cow position:chr4:44779042-44779405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:119-467
               
               
               Cow position:chr4:10392104-10391752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:123-389
               
               
               Cow position:chr4:47748926-47748655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:130-465
               
               
               Cow position:chr4:34222907-34222556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):158, 123

               
               
               Conread position:131-360
               
               
               Cow position:chr4:12458177-12458416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:131-375
               
               
               Cow position:chr4:13265420-13265671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:131-461
               
               
               Cow position:chr4:9133090-9133434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:131-465
               
               
               Cow position:chr4:30473382-30473034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 75

               
               
               Conread position:131-465
               
               
               Cow position:chr4:68836825-68837174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 80

               
               
               Conread position:151-465
               
               
               Cow position:chr4:12239094-12239419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):139, 55

               
               
               Conread position:151-465
               
               
               Cow position:chr4:60650588-60650267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):137, 55

               
               
               Conread position:154-465
               
               
               Cow position:chr4:17091719-17092049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:166-461
               
               
               Cow position:chr4:28833860-28833550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:166-465
               
               
               Cow position:chr4:15460126-15460444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:166-465
               
               
               Cow position:chr4:60262045-60262357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:224-465
               
               
               Cow position:chr4:51859560-51859300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:228-465
               
               
               Cow position:chr4:9648362-9648125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:1-369
               
               
               Cow position:chr5:4387620-4387252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:1-464
               
               
               Cow position:chr5:46792250-46791767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-464
               
               
               Cow position:chr5:62203961-62203490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 33

               
               
               Conread position:1-465
               
               
               Cow position:chr5:5925562-5926046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr5:12730311-12730795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr5:27196681-27197161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:2-375
               
               
               Cow position:chr5:47080675-47080311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:2-422
               
               
               Cow position:chr5:25902071-25902498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:2-465
               
               
               Cow position:chr5:7583610-7584072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 21

               
               
               Conread position:3-465
               
               
               Cow position:chr5:1229183-1228707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 186

               
               
               Conread position:4-378
               
               
               Cow position:chr5:73486525-73486913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-456
               
               
               Cow position:chr5:26625807-26626283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:4-464
               
               
               Cow position:chr5:21523409-21523896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 243

               
               
               Conread position:4-464
               
               
               Cow position:chr5:34191329-34190855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-464
               
               
               Cow position:chr5:64779608-64780088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr5:1339526-1340005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 235

               
               
               Conread position:4-465
               
               
               Cow position:chr5:4963977-4964453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr5:10854420-10854899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr5:10921239-10920760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:4-465
               
               
               Cow position:chr5:14543905-14544381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 245

               
               
               Conread position:4-465
               
               
               Cow position:chr5:23957931-23958406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:4-465
               
               
               Cow position:chr5:29031669-29031188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr5:45702717-45702238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr5:49222100-49222582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:4-465
               
               
               Cow position:chr5:54786712-54787198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr5:54928517-54928997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:4-465
               
               
               Cow position:chr5:58190358-58190839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr5:58244425-58244903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:4-465
               
               
               Cow position:chr5:59063038-59062559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:4-465
               
               
               Cow position:chr5:59145770-59145288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-469
               
               
               Cow position:chr5:6152495-6152977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:5-363
               
               
               Cow position:chr5:46626871-46627234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:5-463
               
               
               Cow position:chr5:58550384-58549928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 25

               
               
               Conread position:7-470
               
               
               Cow position:chr5:49521111-49520627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:13-465
               
               
               Cow position:chr5:14657108-14657577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 179

               
               
               Conread position:14-464
               
               
               Cow position:chr5:48226192-48226652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 70

               
               
               Conread position:17-465
               
               
               Cow position:chr5:7276215-7275749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:20-464
               
               
               Cow position:chr5:57001882-57001412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 91

               
               
               Conread position:21-465
               
               
               Cow position:chr5:58198401-58197941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 185

               
               
               Conread position:43-465
               
               
               Cow position:chr5:10773901-10774339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 0

               
               
               Conread position:51-465
               
               
               Cow position:chr5:10841044-10841457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 155

               
               
               Conread position:81-464
               
               
               Cow position:chr5:32775095-32774695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:99-465
               
               
               Cow position:chr5:13407898-13407514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 51

               
               
               Conread position:100-348
               
               
               Cow position:chr5:49909926-49909672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):133, 13

               
               
               Conread position:109-465
               
               
               Cow position:chr5:4683507-4683881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 204

               
               
               Conread position:122-421
               
               
               Cow position:chr5:47358997-47358684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:137-465
               
               
               Cow position:chr5:39392828-39393169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:139-465
               
               
               Cow position:chr5:41066442-41066097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:144-465
               
               
               Cow position:chr5:16101821-16102150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:153-465
               
               
               Cow position:chr5:3823134-3822811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):140, 53

               
               
               Conread position:153-465
               
               
               Cow position:chr5:9056909-9056578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:153-469
               
               
               Cow position:chr5:11288681-11289009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:159-465
               
               
               Cow position:chr5:5665359-5665677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:167-375
               
               
               Cow position:chr5:12680587-12680806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:172-461
               
               
               Cow position:chr5:280421-280115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 283

               
               
               Conread position:183-368
               
               
               Cow position:chr5:47470007-47469812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:185-368
               
               
               Cow position:chr5:29768338-29768143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:202-465
               
               
               Cow position:chr5:76097251-76096978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1-439
               
               
               Cow position:chr6:40158964-40159412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 154

               
               
               Conread position:1-465
               
               
               Cow position:chr6:59618603-59618142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:2-383
               
               
               Cow position:chr6:41676475-41676081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:2-465
               
               
               Cow position:chr6:66746918-66746421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 150

               
               
               Conread position:2-465
               
               
               Cow position:chr6:66838648-66838169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:2-465
               
               
               Cow position:chr6:67266809-67266312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 150

               
               
               Conread position:3-421
               
               
               Cow position:chr6:6162661-6162236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:4-368
               
               
               Cow position:chr6:29479529-29479147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 204

               
               
               Conread position:4-375
               
               
               Cow position:chr6:8536759-8537152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-383
               
               
               Cow position:chr6:37478756-37478369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:4-398
               
               
               Cow position:chr6:29281832-29281435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):237, 17

               
               
               Conread position:4-421
               
               
               Cow position:chr6:2580954-2580531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:4-457
               
               
               Cow position:chr6:18986554-18986096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 201

               
               
               Conread position:4-463
               
               
               Cow position:chr6:38874124-38874599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-464
               
               
               Cow position:chr6:19104375-19104851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr6:49038-49517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 225

               
               
               Conread position:4-465
               
               
               Cow position:chr6:183008-183481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 185

               
               
               Conread position:4-465
               
               
               Cow position:chr6:1275459-1275941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 239

               
               
               Conread position:4-465
               
               
               Cow position:chr6:1536242-1535767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 442

               
               
               Conread position:4-465
               
               
               Cow position:chr6:1820092-1820567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:4-465
               
               
               Cow position:chr6:2377238-2376761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 230

               
               
               Conread position:4-465
               
               
               Cow position:chr6:3151763-3151289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:4-465
               
               
               Cow position:chr6:6094768-6094292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr6:7138801-7139279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr6:11722660-11723140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 328

               
               
               Conread position:4-465
               
               
               Cow position:chr6:13308851-13309325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr6:13849609-13849131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 16

               
               
               Conread position:4-465
               
               
               Cow position:chr6:13979297-13978811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 258

               
               
               Conread position:4-465
               
               
               Cow position:chr6:15138632-15139112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 235

               
               
               Conread position:4-465
               
               
               Cow position:chr6:16767300-16767781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:4-465
               
               
               Cow position:chr6:17048843-17048371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr6:17595751-17596234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr6:18514072-18513611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr6:18912940-18913422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 388

               
               
               Conread position:4-465
               
               
               Cow position:chr6:20351555-20352036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr6:30272353-30272835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr6:33465500-33465028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr6:35874175-35874655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:4-465
               
               
               Cow position:chr6:37387116-37386638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr6:38274106-38273637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:4-465
               
               
               Cow position:chr6:43620265-43619792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:4-465
               
               
               Cow position:chr6:43791038-43791523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 242

               
               
               Conread position:4-465
               
               
               Cow position:chr6:51717080-51716600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr6:55238229-55237747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr6:64813494-64813958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:4-467
               
               
               Cow position:chr6:47040664-47041133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:4-470
               
               
               Cow position:chr6:16592507-16592024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:5-465
               
               
               Cow position:chr6:39331997-39332472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 25

               
               
               Conread position:13-393
               
               
               Cow position:chr6:16624348-16623975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):279, 72

               
               
               Conread position:15-465
               
               
               Cow position:chr6:44148028-44148489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 306

               
               
               Conread position:18-364
               
               
               Cow position:chr6:50655490-50655133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):112, 176

               
               
               Conread position:21-464
               
               
               Cow position:chr6:22931398-22931862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 163

               
               
               Conread position:24-464
               
               
               Cow position:chr6:58603993-58603548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 110

               
               
               Conread position:25-493
               
               
               Cow position:chr6:10611353-10610874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:31-465
               
               
               Cow position:chr6:11870419-11870874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:31-465
               
               
               Cow position:chr6:40277580-40277123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 60

               
               
               Conread position:42-465
               
               
               Cow position:chr6:33810135-33809693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:76-465
               
               
               Cow position:chr6:57472270-57471858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):212, 28

               
               
               Conread position:87-426
               
               
               Cow position:chr6:13696860-13697218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:87-465
               
               
               Cow position:chr6:22999952-22999552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:87-465
               
               
               Cow position:chr6:65844073-65843668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:125-465
               
               
               Cow position:chr6:27171988-27171640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:133-465
               
               
               Cow position:chr6:15895389-15895739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):155, 75

               
               
               Conread position:158-463
               
               
               Cow position:chr6:27347058-27346765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 65

               
               
               Conread position:162-465
               
               
               Cow position:chr6:67212525-67212839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):126, 63

               
               
               Conread position:181-465
               
               
               Cow position:chr6:21890609-21890311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:181-465
               
               
               Cow position:chr6:46479488-46479185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:192-465
               
               
               Cow position:chr6:32633168-32632876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:201-461
               
               
               Cow position:chr6:39956186-39955918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:228-465
               
               
               Cow position:chr6:55785953-55785697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:290-465
               
               
               Cow position:chr6:60514293-60514108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:294-465
               
               
               Cow position:chr6:43431117-43431297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-349
               
               
               Cow position:chr7:20368489-20368846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:1-361
               
               
               Cow position:chr7:33069871-33070241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 206

               
               
               Conread position:1-383
               
               
               Cow position:chr7:49071379-49071776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 198

               
               
               Conread position:1-456
               
               
               Cow position:chr7:39596707-39597179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:1-464
               
               
               Cow position:chr7:39794485-39794003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr7:113246-112759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:1-465
               
               
               Cow position:chr7:1368066-1368534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:1-465
               
               
               Cow position:chr7:14212774-14213235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:1-465
               
               
               Cow position:chr7:21232377-21232858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 29

               
               
               Conread position:1-465
               
               
               Cow position:chr7:24805858-24806337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 250

               
               
               Conread position:1-465
               
               
               Cow position:chr7:57025425-57025902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:2-450
               
               
               Cow position:chr7:99934-100402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:2-461
               
               
               Cow position:chr7:62393144-62392679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:326
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:2-465
               
               
               Cow position:chr7:21314518-21314048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 22

               
               
               Conread position:2-467
               
               
               Cow position:chr7:22760258-22759787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:3-465
               
               
               Cow position:chr7:37165490-37165014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 187

               
               
               Conread position:3-465
               
               
               Cow position:chr7:67491265-67490822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:4-352
               
               
               Cow position:chr7:24932931-24933287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 203

               
               
               Conread position:4-462
               
               
               Cow position:chr7:64354644-64354170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:13282-13764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:5260312-5260785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr7:6626748-6627228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:4-465
               
               
               Cow position:chr7:7261150-7260669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:10428795-10429274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr7:11461502-11461983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:13531279-13531756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr7:20151090-20151567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr7:20796831-20797301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr7:25442398-25441929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr7:26927546-26928027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:27458106-27458589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:34151572-34151092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:34414429-34414908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 168

               
               
               Conread position:4-465
               
               
               Cow position:chr7:34488542-34488066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:4-465
               
               
               Cow position:chr7:42225169-42225648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr7:46748612-46748135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:4-465
               
               
               Cow position:chr7:55039852-55040334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr7:60727830-60728304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:4-465
               
               
               Cow position:chr7:61577507-61577981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 204

               
               
               Conread position:4-465
               
               
               Cow position:chr7:65813464-65812984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-467
               
               
               Cow position:chr7:537215-537694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:4-467
               
               
               Cow position:chr7:39132205-39132685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 27

               
               
               Conread position:6-450
               
               
               Cow position:chr7:58336398-58336861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:6-465
               
               
               Cow position:chr7:38146097-38146581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:7-465
               
               
               Cow position:chr7:42302839-42303305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 23

               
               
               Conread position:7-465
               
               
               Cow position:chr7:58642932-58643402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 124

               
               
               Conread position:7-465
               
               
               Cow position:chr7:59773938-59773461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 325

               
               
               Conread position:8-370
               
               
               Cow position:chr7:45953332-45952955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 271

               
               
               Conread position:14-465
               
               
               Cow position:chr7:8564-8098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 226

               
               
               Conread position:15-465
               
               
               Cow position:chr7:33403266-33403734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:17-427
               
               
               Cow position:chr7:59682022-59681576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:18-465
               
               
               Cow position:chr7:54697907-54697468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:23-465
               
               
               Cow position:chr7:29473062-29472603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 188

               
               
               Conread position:33-465
               
               
               Cow position:chr7:20062071-20061624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 196

               
               
               Conread position:38-465
               
               
               Cow position:chr7:20771993-20772436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 180

               
               
               Conread position:45-465
               
               
               Cow position:chr7:1601363-1601775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 104

               
               
               Conread position:57-467
               
               
               Cow position:chr7:21878088-21878522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:60-455
               
               
               Cow position:chr7:46900019-46900433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:71-466
               
               
               Cow position:chr7:51921663-51921273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:91-456
               
               
               Cow position:chr7:59140211-59139834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:99-426
               
               
               Cow position:chr7:20785505-20785175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):167, 101

               
               
               Conread position:127-466
               
               
               Cow position:chr7:1816110-1816457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:130-465
               
               
               Cow position:chr7:950709-950352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 72

               
               
               Conread position:132-465
               
               
               Cow position:chr7:52764785-52764437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:143-368
               
               
               Cow position:chr7:28624587-28624352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 189

               
               
               Conread position:144-465
               
               
               Cow position:chr7:3127827-3127490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 62

               
               
               Conread position:146-419
               
               
               Cow position:chr7:66572521-66572805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:155-465
               
               
               Cow position:chr7:67677546-67677219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:159-463
               
               
               Cow position:chr7:42427319-42426998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:159-501
               
               
               Cow position:chr7:901647-902008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:200-463
               
               
               Cow position:chr7:527380-527102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 189

               
               
               Conread position:214-465
               
               
               Cow position:chr7:18425624-18425885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:288-463
               
               
               Cow position:chr7:31866454-31866274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 141

               
               
               Conread position:1-375
               
               
               Cow position:chr8:11373876-11374252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 94

               
               
               Conread position:1-465
               
               
               Cow position:chr8:13372716-13372233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 322

               
               
               Conread position:1-465
               
               
               Cow position:chr8:14926073-14926547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:1-465
               
               
               Cow position:chr8:17313852-17313371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chr8:23773450-23772971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:1-465
               
               
               Cow position:chr8:25773824-25774309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:2-368
               
               
               Cow position:chr8:46216789-46217176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:2-386
               
               
               Cow position:chr8:27536050-27536437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:2-449
               
               
               Cow position:chr8:2233928-2234389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 115

               
               
               Conread position:2-465
               
               
               Cow position:chr8:24869687-24870153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 39

               
               
               Conread position:2-465
               
               
               Cow position:chr8:44109883-44109430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 168

               
               
               Conread position:3-465
               
               
               Cow position:chr8:11804619-11804154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:4-363
               
               
               Cow position:chr8:38044320-38044690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:4-363
               
               
               Cow position:chr8:38589544-38589906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:4-363
               
               
               Cow position:chr8:49285250-49285624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-368
               
               
               Cow position:chr8:5244603-5244965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:4-368
               
               
               Cow position:chr8:8553907-8554278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 26

               
               
               Conread position:4-374
               
               
               Cow position:chr8:21154536-21154914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-421
               
               
               Cow position:chr8:1934876-1935304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 172

               
               
               Conread position:4-447
               
               
               Cow position:chr8:46801099-46801566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 214

               
               
               Conread position:4-461
               
               
               Cow position:chr8:26393008-26393490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 220

               
               
               Conread position:4-464
               
               
               Cow position:chr8:8399305-8399766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:4-465
               
               
               Cow position:chr8:43231-43710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:4-465
               
               
               Cow position:chr8:1151472-1151938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:4-465
               
               
               Cow position:chr8:1501472-1501939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:4-465
               
               
               Cow position:chr8:3333843-3333361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 257

               
               
               Conread position:4-465
               
               
               Cow position:chr8:3955850-3955385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:4-465
               
               
               Cow position:chr8:5019824-5019343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:6465689-6465208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:8913535-8913059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:4-465
               
               
               Cow position:chr8:11835344-11834864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:12446596-12447071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:4-465
               
               
               Cow position:chr8:12451865-12451379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 328

               
               
               Conread position:4-465
               
               
               Cow position:chr8:12805587-12805101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:14257895-14257418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 27

               
               
               Conread position:4-465
               
               
               Cow position:chr8:14589063-14589539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr8:17382302-17382780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr8:19333386-19332908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr8:21252053-21251571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:4-465
               
               
               Cow position:chr8:24873773-24874226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:4-465
               
               
               Cow position:chr8:24913478-24913955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:4-465
               
               
               Cow position:chr8:25413431-25412956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:4-465
               
               
               Cow position:chr8:29922555-29923006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:4-465
               
               
               Cow position:chr8:30156914-30156438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 202

               
               
               Conread position:4-465
               
               
               Cow position:chr8:35472109-35471638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 177

               
               
               Conread position:4-465
               
               
               Cow position:chr8:38393445-38392962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:39193105-39193587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:42486719-42486244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:4-465
               
               
               Cow position:chr8:44240880-44241354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:4-465
               
               
               Cow position:chr8:47888673-47888184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 200

               
               
               Conread position:4-465
               
               
               Cow position:chr8:49219755-49219272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr8:53837752-53837279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:4-465
               
               
               Cow position:chr8:55271718-55272193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 33

               
               
               Conread position:4-465
               
               
               Cow position:chr8:58183825-58184286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:4-465
               
               
               Cow position:chr8:59260129-59260613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:5-364
               
               
               Cow position:chr8:41970250-41970618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 229

               
               
               Conread position:5-461
               
               
               Cow position:chr8:11777465-11776998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 58

               
               
               Conread position:5-463
               
               
               Cow position:chr8:51701137-51700654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:5-465
               
               
               Cow position:chr8:4273082-4272604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:5-469
               
               
               Cow position:chr8:8225806-8226279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:314
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:6-364
               
               
               Cow position:chr8:27819716-27819350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:7-465
               
               
               Cow position:chr8:2167709-2168183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 227

               
               
               Conread position:7-465
               
               
               Cow position:chr8:4689209-4688740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 393

               
               
               Conread position:7-465
               
               
               Cow position:chr8:6062664-6063144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 23

               
               
               Conread position:7-465
               
               
               Cow position:chr8:10751152-10750680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:8-404
               
               
               Cow position:chr8:45069746-45069334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:8-431
               
               
               Cow position:chr8:9640703-9640262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:13-465
               
               
               Cow position:chr8:49414869-49414405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:18-465
               
               
               Cow position:chr8:46059163-46059618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 20

               
               
               Conread position:20-464
               
               
               Cow position:chr8:11764750-11764286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 207

               
               
               Conread position:23-465
               
               
               Cow position:chr8:42153506-42153964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:24-428
               
               
               Cow position:chr8:5680373-5680781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 106

               
               
               Conread position:25-465
               
               
               Cow position:chr8:36786004-36786465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 0

               
               
               Conread position:27-470
               
               
               Cow position:chr8:11791587-11791146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):5, 208

               
               
               Conread position:35-465
               
               
               Cow position:chr8:9738313-9737868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 151

               
               
               Conread position:46-383
               
               
               Cow position:chr8:51697684-51698020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):242, 75

               
               
               Conread position:49-465
               
               
               Cow position:chr8:61099512-61099947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 99

               
               
               Conread position:55-465
               
               
               Cow position:chr8:21041864-21042293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 0

               
               
               Conread position:62-465
               
               
               Cow position:chr8:40890556-40890961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:64-465
               
               
               Cow position:chr8:16733540-16733134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):226, 128

               
               
               Conread position:69-352
               
               
               Cow position:chr8:56752148-56751853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:72-465
               
               
               Cow position:chr8:43541804-43542218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 250

               
               
               Conread position:74-463
               
               
               Cow position:chr8:42470418-42470015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:76-465
               
               
               Cow position:chr8:29009344-29008939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:77-465
               
               
               Cow position:chr8:11604971-11604559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:80-465
               
               
               Cow position:chr8:41642949-41643351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):208, 44

               
               
               Conread position:87-384
               
               
               Cow position:chr8:28881402-28881090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:102-467
               
               
               Cow position:chr8:11566442-11566066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 175

               
               
               Conread position:109-463
               
               
               Cow position:chr8:36810846-36810477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 97

               
               
               Conread position:130-349
               
               
               Cow position:chr8:45988457-45988228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:130-465
               
               
               Cow position:chr8:45157855-45158205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):107, 232

               
               
               Conread position:144-465
               
               
               Cow position:chr8:10740968-10741308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:145-465
               
               
               Cow position:chr8:11147597-11147924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:153-465
               
               
               Cow position:chr8:18291335-18291661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 66

               
               
               Conread position:153-465
               
               
               Cow position:chr8:50996451-50996124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:154-465
               
               
               Cow position:chr8:9943053-9943375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:155-461
               
               
               Cow position:chr8:13555891-13555587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):215, 21

               
               
               Conread position:181-420
               
               
               Cow position:chr8:17995582-17995835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:193-465
               
               
               Cow position:chr8:51068690-51068399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-465
               
               
               Cow position:chr8:1346655-1346912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1-465
               
               
               Cow position:chr9:18507360-18507842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-470
               
               
               Cow position:chr9:51179705-51180194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-460
               
               
               Cow position:chr9:40416551-40417039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:2-463
               
               
               Cow position:chr9:2551955-2552432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:2-464
               
               
               Cow position:chr9:27098813-27098325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 192

               
               
               Conread position:2-464
               
               
               Cow position:chr9:33950743-33951212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 201

               
               
               Conread position:2-465
               
               
               Cow position:chr9:12726923-12726442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:2-465
               
               
               Cow position:chr9:35681874-35681396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 244

               
               
               Conread position:2-465
               
               
               Cow position:chr9:35708040-35707562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 244

               
               
               Conread position:4-363
               
               
               Cow position:chr9:34770620-34770259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:4-464
               
               
               Cow position:chr9:28024273-28023793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 168

               
               
               Conread position:4-464
               
               
               Cow position:chr9:31810042-31809569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr9:202827-203303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 198

               
               
               Conread position:4-465
               
               
               Cow position:chr9:649586-650057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:4-465
               
               
               Cow position:chr9:2806893-2807374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chr9:5534754-5535234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 235

               
               
               Conread position:4-465
               
               
               Cow position:chr9:10939187-10938715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr9:14002503-14002046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr9:16178058-16177578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 317

               
               
               Conread position:4-465
               
               
               Cow position:chr9:17303505-17303981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:4-465
               
               
               Cow position:chr9:19156821-19157297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-465
               
               
               Cow position:chr9:21411773-21411296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 195

               
               
               Conread position:4-465
               
               
               Cow position:chr9:22320240-22320714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr9:27037575-27037094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 236

               
               
               Conread position:4-465
               
               
               Cow position:chr9:42312156-42311678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chr9:43667117-43666660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:4-465
               
               
               Cow position:chr9:45875983-45875503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 335

               
               
               Conread position:4-465
               
               
               Cow position:chr9:47005206-47004724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 420

               
               
               Conread position:4-467
               
               
               Cow position:chr9:2213609-2213129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:5-368
               
               
               Cow position:chr9:28357027-28356652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:5-462
               
               
               Cow position:chr9:59508705-59509180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 19

               
               
               Conread position:6-469
               
               
               Cow position:chr9:25212339-25211855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 231

               
               
               Conread position:7-465
               
               
               Cow position:chr9:3311079-3310608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 426

               
               
               Conread position:7-465
               
               
               Cow position:chr9:6251731-6251245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-465
               
               
               Cow position:chr9:9015535-9015056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 362

               
               
               Conread position:7-465
               
               
               Cow position:chr9:47044431-47043953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-481
               
               
               Cow position:chr9:38678590-38678102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 28

               
               
               Conread position:17-468
               
               
               Cow position:chr9:59480399-59480858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 329

               
               
               Conread position:18-465
               
               
               Cow position:chr9:31091633-31091167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 102

               
               
               Conread position:20-465
               
               
               Cow position:chr9:13473333-13473799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 129

               
               
               Conread position:21-465
               
               
               Cow position:chr9:37160368-37160828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 185

               
               
               Conread position:30-384
               
               
               Cow position:chr9:20180987-20181346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:69-465
               
               
               Cow position:chr9:49301840-49302247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 107

               
               
               Conread position:76-383
               
               
               Cow position:chr9:33593529-33593208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:78-462
               
               
               Cow position:chr9:23420991-23420602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):208, 144

               
               
               Conread position:79-465
               
               
               Cow position:chr9:35936621-35937029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:99-463
               
               
               Cow position:chr9:22437318-22436940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:101-364
               
               
               Cow position:chr9:44820706-44820427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:108-468
               
               
               Cow position:chr9:59538463-59538084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:109-465
               
               
               Cow position:chr9:128833-129207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:114-465
               
               
               Cow position:chr9:18833974-18834342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:138-465
               
               
               Cow position:chr9:5198976-5199317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:144-375
               
               
               Cow position:chr9:1999520-1999759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):96, 62

               
               
               Conread position:156-465
               
               
               Cow position:chr9:6978631-6978314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:168-465
               
               
               Cow position:chr9:45898052-45897737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:169-465
               
               
               Cow position:chr9:1994112-1994421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:184-470
               
               
               Cow position:chr9:10109663-10109362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:198-465
               
               
               Cow position:chr9:2607912-2607626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:213-463
               
               
               Cow position:chr9:3961372-3961636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:224-465
               
               
               Cow position:chr9:50792966-50792706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:228-465
               
               
               Cow position:chr9:22406814-22407061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:234-465
               
               
               Cow position:chr9:6300820-6300569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-383
               
               
               Cow position:chrX:17890918-17890526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 29

               
               
               Conread position:1-425
               
               
               Cow position:chrX:21388959-21388518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:1-465
               
               
               Cow position:chrX:2480253-2480735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:1-465
               
               
               Cow position:chrX:23279402-23278921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chrX:30167700-30168180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-465
               
               
               Cow position:chrX:39561557-39562040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:2-368
               
               
               Cow position:chrX:302476-302096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):144, 8

               
               
               Conread position:2-368
               
               
               Cow position:chrX:387512-387135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:2-368
               
               
               Cow position:chrX:24807179-24807552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):282, 52

               
               
               Conread position:2-383
               
               
               Cow position:chrX:22126400-22126787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:2-389
               
               
               Cow position:chrX:3143212-3142821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 261

               
               
               Conread position:2-437
               
               
               Cow position:chrX:26623429-26623887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 197

               
               
               Conread position:2-461
               
               
               Cow position:chrX:34008159-34007683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 233

               
               
               Conread position:2-465
               
               
               Cow position:chrX:20133779-20134253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 19

               
               
               Conread position:2-465
               
               
               Cow position:chrX:20732623-20732143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:2-465
               
               
               Cow position:chrX:21317843-21317378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:2-465
               
               
               Cow position:chrX:27645435-27644971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:2-465
               
               
               Cow position:chrX:36839095-36838609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:3-467
               
               
               Cow position:chrX:5668370-5668819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:330
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):290, 44

               
               
               Conread position:4-375
               
               
               Cow position:chrX:15040171-15040554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 353

               
               
               Conread position:4-460
               
               
               Cow position:chrX:2047458-2046992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:4-461
               
               
               Cow position:chrX:32328586-32328110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 198

               
               
               Conread position:4-463
               
               
               Cow position:chrX:5360381-5359905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-463
               
               
               Cow position:chrX:23388176-23388652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:4-463
               
               
               Cow position:chrX:31727848-31727369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 219

               
               
               Conread position:4-464
               
               
               Cow position:chrX:2273674-2273204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:4-464
               
               
               Cow position:chrX:18221787-18221316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 26

               
               
               Conread position:4-464
               
               
               Cow position:chrX:38149971-38149490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 423

               
               
               Conread position:4-465
               
               
               Cow position:chrX:1549353-1548874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chrX:2814105-2814586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chrX:3082766-3083240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 20

               
               
               Conread position:4-465
               
               
               Cow position:chrX:3360196-3359722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:4-465
               
               
               Cow position:chrX:3418846-3419327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 258

               
               
               Conread position:4-465
               
               
               Cow position:chrX:7095871-7095388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:8481823-8481346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:4-465
               
               
               Cow position:chrX:9095018-9094540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:9127457-9126976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chrX:10529415-10529893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:11146967-11147436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:13929362-13929836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chrX:15177062-15177538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 189

               
               
               Conread position:4-465
               
               
               Cow position:chrX:15261245-15261718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:15978580-15979052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 316

               
               
               Conread position:4-465
               
               
               Cow position:chrX:18657433-18657910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 26

               
               
               Conread position:4-465
               
               
               Cow position:chrX:19398148-19397668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:19474777-19475260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:4-465
               
               
               Cow position:chrX:20034034-20034508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:4-465
               
               
               Cow position:chrX:22818446-22817968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 26

               
               
               Conread position:4-465
               
               
               Cow position:chrX:24412401-24411925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:4-465
               
               
               Cow position:chrX:24770483-24770962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:26443919-26443446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 26

               
               
               Conread position:4-465
               
               
               Cow position:chrX:29094943-29095428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chrX:29098798-29098327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:4-465
               
               
               Cow position:chrX:30013367-30012903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-465
               
               
               Cow position:chrX:30229740-30230216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:4-465
               
               
               Cow position:chrX:31495108-31494625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chrX:34093455-34093936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-465
               
               
               Cow position:chrX:35532231-35531753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:4-467
               
               
               Cow position:chrX:9010705-9010232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:4-470
               
               
               Cow position:chrX:30137483-30137966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 272

               
               
               Conread position:4-477
               
               
               Cow position:chrX:31200929-31200442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 37

               
               
               Conread position:4-499
               
               
               Cow position:chrX:16781657-16781143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 161

               
               
               Conread position:5-465
               
               
               Cow position:chrX:5649863-5650333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:5-465
               
               
               Cow position:chrX:17665425-17665905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 357

               
               
               Conread position:5-465
               
               
               Cow position:chrX:30072253-30071791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):203, 14

               
               
               Conread position:7-368
               
               
               Cow position:chrX:23453683-23454054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 232

               
               
               Conread position:7-460
               
               
               Cow position:chrX:28520232-28520700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 23

               
               
               Conread position:7-465
               
               
               Cow position:chrX:2578790-2578317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 28

               
               
               Conread position:7-465
               
               
               Cow position:chrX:16809515-16809993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-465
               
               
               Cow position:chrX:21831884-21831405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-465
               
               
               Cow position:chrX:22810264-22809789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:8-486
               
               
               Cow position:chrX:15143833-15144327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:9-389
               
               
               Cow position:chrX:43790779-43791178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:14-464
               
               
               Cow position:chrX:42382015-42382462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):275, 99

               
               
               Conread position:17-465
               
               
               Cow position:chrX:29909067-29909528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 136

               
               
               Conread position:18-464
               
               
               Cow position:chrX:17524388-17524828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):333, 147

               
               
               Conread position:20-348
               
               
               Cow position:chrX:503665-504016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:26-465
               
               
               Cow position:chrX:27978468-27978922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 180

               
               
               Conread position:41-364
               
               
               Cow position:chrX:12312644-12312982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 233

               
               
               Conread position:48-465
               
               
               Cow position:chrX:8513610-8513188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 91

               
               
               Conread position:51-465
               
               
               Cow position:chrX:29948294-29948720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 101

               
               
               Conread position:68-465
               
               
               Cow position:chrX:26397811-26398228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:71-363
               
               
               Cow position:chrX:40642491-40642203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 9

               
               
               Conread position:108-390
               
               
               Cow position:chrX:41848947-41849233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:109-465
               
               
               Cow position:chrX:672936-673309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):130, 97

               
               
               Conread position:113-465
               
               
               Cow position:chrX:31511875-31511502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 219

               
               
               Conread position:119-464
               
               
               Cow position:chrX:28505004-28505371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):169, 213

               
               
               Conread position:120-466
               
               
               Cow position:chrX:14783222-14783584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 86

               
               
               Conread position:131-465
               
               
               Cow position:chrX:28559627-28559979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:131-486
               
               
               Cow position:chrX:3373674-3374047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 360

               
               
               Conread position:132-465
               
               
               Cow position:chrX:15622247-15622599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:158-465
               
               
               Cow position:chrX:39565102-39565410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 66

               
               
               Conread position:159-465
               
               
               Cow position:chrX:3466424-3466749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):129, 269

               
               
               Conread position:159-481
               
               
               Cow position:chrX:28607876-28608216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 301

               
               
               Conread position:168-386
               
               
               Cow position:chrX:34220708-34220482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:203-465
               
               
               Cow position:chrX:21581664-21581384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 274

               
               
               Conread position:225-465
               
               
               Cow position:chrX:13432186-13432444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:234-465
               
               
               Cow position:chrX:18536537-18536296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:294-465
               
               
               Cow position:chrX:28550593-28550413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 0
Conread position:	1-421
Cow position:	chr1:88267502-88267917 (view UCSC Genome Browser custom track)
Alignm length:	434
Alignm identity:	298
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	19, 53
Conread position:	1-444
Cow position:	chr1:4276239-4275784 (view UCSC Genome Browser custom track)
Alignm length:	464
Alignm identity:	337
Alignm E-value:	0
Alignm gaps (pig, cow):	17, 63
Conread position:	1-460
Cow position:	chr1:6771175-6770700 (view UCSC Genome Browser custom track)
Alignm length:	479
Alignm identity:	325
Alignm E-value:	0
Alignm gaps (pig, cow):	16, 191
Conread position:	1-465
Cow position:	chr1:21995394-21995876 (view UCSC Genome Browser custom track)
Alignm length:	483
Alignm identity:	345
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 0
Conread position:	1-470
Cow position:	chr1:102432405-102432894 (view UCSC Genome Browser custom track)
Alignm length:	490
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 0
Conread position:	2-337
Cow position:	chr1:76702037-76702376 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	250
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 53
Conread position:	2-364
Cow position:	chr1:57695022-57695411 (view UCSC Genome Browser custom track)
Alignm length:	392
Alignm identity:	266
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	21, 98
Conread position:	2-458
Cow position:	chr1:23098256-23097781 (view UCSC Genome Browser custom track)
Alignm length:	483
Alignm identity:	332
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 133
Conread position:	2-461
Cow position:	chr1:101671734-101672196 (view UCSC Genome Browser custom track)
Alignm length:	480
Alignm identity:	331
Alignm E-value:	0
Alignm gaps (pig, cow):	155, 39
Conread position:	2-464
Cow position:	chr1:51481242-51481702 (view UCSC Genome Browser custom track)
Alignm length:	476
Alignm identity:	311
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	15, 75
Conread position:	2-465
Cow position:	chr1:41518208-41518676 (view UCSC Genome Browser custom track)
Alignm length:	474
Alignm identity:	342
Alignm E-value:	0
Alignm gaps (pig, cow):	15, 65
Conread position:	2-466
Cow position:	chr1:10011693-10012166 (view UCSC Genome Browser custom track)
Alignm length:	486
Alignm identity:	317
Alignm E-value:	7e-35
Alignm gaps (pig, cow):	92, 36
Conread position:	3-464
Cow position:	chr1:71451685-71451204 (view UCSC Genome Browser custom track)
Alignm length:	484
Alignm identity:	308
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	22, 381
Conread position:	4-352
Cow position:	chr1:31596595-31596234 (view UCSC Genome Browser custom track)
Alignm length:	363
Alignm identity:	262
Alignm E-value:	0
Alignm gaps (pig, cow):	28, 264
Conread position:	4-360
Cow position:	chr1:5504553-5504183 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	278
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 0
Conread position:	4-368
Cow position:	chr1:57948676-57948301 (view UCSC Genome Browser custom track)
Alignm length:	380
Alignm identity:	276
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 79
Conread position:	4-375
Cow position:	chr1:57525688-57525303 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	284
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	18, 199
Conread position:	4-383
Cow position:	chr1:22631395-22631789 (view UCSC Genome Browser custom track)
Alignm length:	399
Alignm identity:	302
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 111
Conread position:	4-461
Cow position:	chr1:26812458-26812926 (view UCSC Genome Browser custom track)
Alignm length:	477
Alignm identity:	333
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 157
Conread position:	4-464
Cow position:	chr1:82655263-82654784 (view UCSC Genome Browser custom track)
Alignm length:	481
Alignm identity:	350
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 243