Non-Coding RNA Search

Cow genome map


           Conread name:
           Mixn-0010d11
        

               Conread position:
               1-457
               

               Cow position:
               chr1:93110884-93110418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               2-182
               

               Cow position:
               chr1:88652371-88652568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               2-198
               

               Cow position:
               chr1:76470399-76470608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               12, 85
               

               Conread position:
               2-332
               

               Cow position:
               chr1:7609385-7609686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               160, 11
               

               Conread position:
               2-457
               

               Cow position:
               chr1:91066408-91065944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               12, 199
               

               Conread position:
               3-166
               

               Cow position:
               chr1:12678270-12678439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-196
               

               Cow position:
               chr1:31348167-31347964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               11, 113
               

               Conread position:
               3-198
               

               Cow position:
               chr1:3137675-3137882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               3-198
               

               Cow position:
               chr1:22448843-22448634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               3-198
               

               Cow position:
               chr1:39069210-39069002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 199
               

               Conread position:
               3-198
               

               Cow position:
               chr1:57635208-57635414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               11, 109
               

               Conread position:
               3-198
               

               Cow position:
               chr1:79844210-79844419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               11, 146
               

               Conread position:
               3-198
               

               Cow position:
               chr1:102647528-102647319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-200
               

               Cow position:
               chr1:33811675-33811884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               11, 104
               

               Conread position:
               3-201
               

               Cow position:
               chr1:68818055-68817843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               11, 196
               

               Conread position:
               3-206
               

               Cow position:
               chr1:57264245-57264036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               11, 104
               

               Conread position:
               3-405
               

               Cow position:
               chr1:74084448-74084054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               3-412
               

               Cow position:
               chr1:6941207-6941611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               11, 151
               

               Conread position:
               3-412
               

               Cow position:
               chr1:6958620-6959024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               288
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 150
               

               Conread position:
               3-444
               

               Cow position:
               chr1:70534193-70533757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               11, 170
               

               Conread position:
               3-445
               

               Cow position:
               chr1:12871266-12870809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               11, 200
               

               Conread position:
               4-153
               

               Cow position:
               chr1:3076649-3076490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               4-154
               

               Cow position:
               chr1:15028430-15028588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               4-191
               

               Cow position:
               chr1:25856433-25856627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               4-194
               

               Cow position:
               chr1:12596157-12595955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               4-196
               

               Cow position:
               chr1:31414215-31414010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               29, 196
               

               Conread position:
               4-198
               

               Cow position:
               chr1:79278692-79278494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               79, 15
               

               Conread position:
               4-203
               

               Cow position:
               chr1:58889551-58889337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               4-404
               

               Cow position:
               chr1:72141306-72141707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               288
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               10, 223
               

               Conread position:
               4-453
               

               Cow position:
               chr1:41735881-41735440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               328
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               32, 8
               

               Conread position:
               5-385
               

               Cow position:
               chr1:4032379-4032751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               28, 7
               

               Conread position:
               6-198
               

               Cow position:
               chr1:48444438-48444241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               8, 100
               

               Conread position:
               6-198
               

               Cow position:
               chr1:61564537-61564749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-198
               

               Cow position:
               chr1:94226802-94226599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-200
               

               Cow position:
               chr1:82378540-82378743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               14, 6
               

               Conread position:
               6-385
               

               Cow position:
               chr1:36874759-36875145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 167
               

               Conread position:
               6-437
               

               Cow position:
               chr1:80764791-80764361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               319
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               7, 152
               

               Conread position:
               8-339
               

               Cow position:
               chr1:44769363-44769036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               233
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               61, 203
               

               Conread position:
               8-452
               

               Cow position:
               chr1:33986771-33986333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               320
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               6, 169
               

               Conread position:
               10-454
               

               Cow position:
               chr1:10064229-10063794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               27, 93
               

               Conread position:
               12-185
               

               Cow position:
               chr1:81363745-81363923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               12-195
               

               Cow position:
               chr1:21835699-21835893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 185
               

               Conread position:
               12-196
               

               Cow position:
               chr1:98708193-98708391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               12-197
               

               Cow position:
               chr1:22467681-22467886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 199
               

               Conread position:
               12-198
               

               Cow position:
               chr1:24133304-24133106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               12-198
               

               Cow position:
               chr1:36931910-36932110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               25, 191
               

               Conread position:
               12-198
               

               Cow position:
               chr1:44136711-44136513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               21, 113
               

               Conread position:
               12-198
               

               Cow position:
               chr1:69264573-69264763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               25, 152
               

               Conread position:
               12-198
               

               Cow position:
               chr1:71045506-71045707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               25, 190
               

               Conread position:
               12-199
               

               Cow position:
               chr1:47658106-47658301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 104
               

               Conread position:
               12-201
               

               Cow position:
               chr1:14379779-14379579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               25, 109
               

               Conread position:
               12-201
               

               Cow position:
               chr1:82936831-82936636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               21, 168
               

               Conread position:
               12-384
               

               Cow position:
               chr1:43505274-43505647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               30, 192
               

               Conread position:
               12-386
               

               Cow position:
               chr1:21092842-21093235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               30, 194
               

               Conread position:
               12-394
               

               Cow position:
               chr1:52039388-52039763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               25, 175
               

               Conread position:
               12-421
               

               Cow position:
               chr1:57900990-57900572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 160
               

               Conread position:
               12-451
               

               Cow position:
               chr1:26688727-26688284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               21, 197
               

               Conread position:
               12-451
               

               Cow position:
               chr1:63504090-63504521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               324
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               25, 147
               

               Conread position:
               12-455
               

               Cow position:
               chr1:39418367-39417920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               314
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               25, 190
               

               Conread position:
               12-456
               

               Cow position:
               chr1:66355957-66355521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 155
               

               Conread position:
               12-457
               

               Cow position:
               chr1:31390833-31390398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               317
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               22, 18
               

               Conread position:
               12-457
               

               Cow position:
               chr1:35170088-35170521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               26, 142
               

               Conread position:
               13-198
               

               Cow position:
               chr1:75967188-75967384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               24, 84
               

               Conread position:
               13-198
               

               Cow position:
               chr1:97806544-97806741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               24, 188
               

               Conread position:
               13-201
               

               Cow position:
               chr1:47233723-47233523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               15-195
               

               Cow position:
               chr1:71325493-71325297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 190
               

               Conread position:
               15-198
               

               Cow position:
               chr1:51531527-51531719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               22, 101
               

               Conread position:
               16-194
               

               Cow position:
               chr1:84239352-84239164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               16-198
               

               Cow position:
               chr1:84240655-84240845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 100
               

               Conread position:
               19-457
               

               Cow position:
               chr1:25281918-25281464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               18, 198
               

               Conread position:
               21-200
               

               Cow position:
               chr1:95056815-95057010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               14, 186
               

               Conread position:
               21-386
               

               Cow position:
               chr1:29916175-29916531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               265
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               16, 5
               

               Conread position:
               32-198
               

               Cow position:
               chr1:78809656-78809833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               37, 163
               

               Conread position:
               41-199
               

               Cow position:
               chr1:14981337-14981166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               48-199
               

               Cow position:
               chr1:68763885-68763729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               76-450
               

               Cow position:
               chr1:42545958-42545594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               32, 117
               

               Conread position:
               79-451
               

               Cow position:
               chr1:24188061-24188407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               18, 85
               

               Conread position:
               80-385
               

               Cow position:
               chr1:73196396-73196110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               180, 15
               

               Conread position:
               80-417
               

               Cow position:
               chr1:75347455-75347778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               84, 15
               

               Conread position:
               81-385
               

               Cow position:
               chr1:43872495-43872201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               92, 14
               

               Conread position:
               95-385
               

               Cow position:
               chr1:86578799-86579081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               110-445
               

               Cow position:
               chr1:72731902-72732218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               57, 80
               

               Conread position:
               110-457
               

               Cow position:
               chr1:70389299-70389643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               99, 46
               

               Conread position:
               136-435
               

               Cow position:
               chr1:26427972-26427689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               35, 54
               

               Conread position:
               157-457
               

               Cow position:
               chr1:20581838-20582135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               56, 13
               

               Conread position:
               223-456
               

               Cow position:
               chr1:75998517-75998278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               36, 122
               

               Conread position:
               230-380
               

               Cow position:
               chr1:95215233-95215076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               24, 49
               

               Conread position:
               230-421
               

               Cow position:
               chr1:65909475-65909660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               76, 46
               

               Conread position:
               230-450
               

               Cow position:
               chr1:541748-541981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 124
               

               Conread position:
               247-457
               

               Cow position:
               chr1:88910922-88910711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               14, 120
               

               Conread position:
               250-417
               

               Cow position:
               chr1:75933251-75933416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               250-447
               

               Cow position:
               chr1:11021000-11021204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               16, 54
               

               Conread position:
               259-453
               

               Cow position:
               chr1:96929031-96929220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               49, 59
               

               Conread position:
               260-452
               

               Cow position:
               chr1:30441950-30442138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               138, 165
               

               Conread position:
               260-457
               

               Cow position:
               chr1:57119354-57119153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 77
               

               Conread position:
               261-438
               

               Cow position:
               chr1:24406903-24406720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               47, 135
               

               Conread position:
               261-453
               

               Cow position:
               chr1:54289198-54289001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               261-454
               

               Cow position:
               chr1:20099363-20099557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               160, 44
               

               Conread position:
               261-454
               

               Cow position:
               chr1:39183833-39183632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 144
               

               Conread position:
               261-456
               

               Cow position:
               chr1:64218432-64218236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               137, 46
               

               Conread position:
               261-457
               

               Cow position:
               chr1:18414472-18414276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               48, 74
               

               Conread position:
               261-457
               

               Cow position:
               chr1:50634262-50634066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               137, 41
               

               Conread position:
               263-446
               

               Cow position:
               chr1:39224930-39224737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               264-447
               

               Cow position:
               chr1:95229334-95229146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               153
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               265-447
               

               Cow position:
               chr1:60281371-60281552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 133
               

               Conread position:
               265-451
               

               Cow position:
               chr1:38205472-38205658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               43, 160
               

               Conread position:
               265-454
               

               Cow position:
               chr1:23759779-23759975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               43, 65
               

               Conread position:
               265-454
               

               Cow position:
               chr1:51565534-51565720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               133, 21
               

               Conread position:
               265-454
               

               Cow position:
               chr1:85141732-85141544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               133, 38
               

               Conread position:
               266-380
               

               Cow position:
               chr1:61542919-61542805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               269-455
               

               Cow position:
               chr1:46205817-46206001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               129, 34
               

               Conread position:
               269-457
               

               Cow position:
               chr1:64624828-64624635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               12, 118
               

               Conread position:
               274-453
               

               Cow position:
               chr1:5347070-5347245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               275-453
               

               Cow position:
               chr1:46821976-46822159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               280-412
               

               Cow position:
               chr1:70416747-70416615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               28, 117
               

               Conread position:
               285-454
               

               Cow position:
               chr1:29337933-29338108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               23, 61
               

               Conread position:
               288-454
               

               Cow position:
               chr1:33921259-33921088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 56
               

               Conread position:
               290-456
               

               Cow position:
               chr1:19416853-19416687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 29
               

               Conread position:
               290-457
               

               Cow position:
               chr1:43789879-43790047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               109, 41
               

               Conread position:
               293-450
               

               Cow position:
               chr1:83926413-83926574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               15, 151
               

               Conread position:
               298-454
               

               Cow position:
               chr1:44169684-44169845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               308-453
               

               Cow position:
               chr1:34920940-34921088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               321-454
               

               Cow position:
               chr1:10674004-10674141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               339-457
               

               Cow position:
               chr1:65671491-65671610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               59, 87
               

               Conread position:
               1-437
               

               Cow position:
               chr10:32583626-32584057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               307
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               1-457
               

               Cow position:
               chr10:65072402-65071952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               13, 146
               

               Conread position:
               2-383
               

               Cow position:
               chr10:49169347-49168947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               12, 209
               

               Conread position:
               3-191
               

               Cow position:
               chr10:52296208-52296415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-194
               

               Cow position:
               chr10:25699376-25699569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               3-197
               

               Cow position:
               chr10:32774825-32775029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-198
               

               Cow position:
               chr10:12314877-12315079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               11, 110
               

               Conread position:
               3-198
               

               Cow position:
               chr10:37235841-37235627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 205
               

               Conread position:
               3-201
               

               Cow position:
               chr10:1351645-1351862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 163
               

               Conread position:
               3-201
               

               Cow position:
               chr10:22786611-22786823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 200
               

               Conread position:
               3-201
               

               Cow position:
               chr10:39227867-39228071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               11, 101
               

               Conread position:
               3-201
               

               Cow position:
               chr10:58259805-58259592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 201
               

               Conread position:
               3-203
               

               Cow position:
               chr10:34554378-34554161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               11, 202
               

               Conread position:
               3-203
               

               Cow position:
               chr10:38014083-38014294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               11, 196
               

               Conread position:
               3-206
               

               Cow position:
               chr10:51779317-51779108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               3-206
               

               Cow position:
               chr10:59675894-59675678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               3-207
               

               Cow position:
               chr10:40256245-40256454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 137
               

               Conread position:
               3-377
               

               Cow position:
               chr10:16599321-16598935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 174
               

               Conread position:
               3-395
               

               Cow position:
               chr10:42636941-42637331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               36, 76
               

               Conread position:
               3-452
               

               Cow position:
               chr10:57461078-57461531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               330
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               4-140
               

               Cow position:
               chr10:23329777-23329918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               62, 15
               

               Conread position:
               4-149
               

               Cow position:
               chr10:2407397-2407243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               4-172
               

               Cow position:
               chr10:42230376-42230556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               4-187
               

               Cow position:
               chr10:51696464-51696655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 112
               

               Conread position:
               4-196
               

               Cow position:
               chr10:20505255-20505460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               66, 7
               

               Conread position:
               4-197
               

               Cow position:
               chr10:39110282-39110082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               39, 8
               

               Conread position:
               4-438
               

               Cow position:
               chr10:21461952-21462377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               312
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               10, 200
               

               Conread position:
               4-452
               

               Cow position:
               chr10:2849068-2849507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 6
               

               Conread position:
               6-182
               

               Cow position:
               chr10:16598404-16598594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 6
               

               Conread position:
               6-192
               

               Cow position:
               chr10:3985162-3985345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-201
               

               Cow position:
               chr10:45370772-45370980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 31
               

               Conread position:
               6-389
               

               Cow position:
               chr10:36001921-36002291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               63, 5
               

               Conread position:
               6-456
               

               Cow position:
               chr10:9342025-9341572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               329
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               9, 161
               

               Conread position:
               7-450
               

               Cow position:
               chr10:41985171-41984729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               317
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               26, 5
               

               Conread position:
               8-198
               

               Cow position:
               chr10:61588544-61588339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 5
               

               Conread position:
               8-455
               

               Cow position:
               chr10:8413335-8412891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 155
               

               Conread position:
               10-196
               

               Cow position:
               chr10:31812695-31812509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               54, 19
               

               Conread position:
               11-457
               

               Cow position:
               chr10:24752877-24753319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               317
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               57, 149
               

               Conread position:
               12-172
               

               Cow position:
               chr10:28835951-28836118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 44
               

               Conread position:
               12-182
               

               Cow position:
               chr10:35901056-35901237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               12-195
               

               Cow position:
               chr10:34430494-34430299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               25, 189
               

               Conread position:
               12-196
               

               Cow position:
               chr10:6235703-6235511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 145
               

               Conread position:
               12-196
               

               Cow position:
               chr10:24547979-24548177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 133
               

               Conread position:
               12-197
               

               Cow position:
               chr10:1488570-1488761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 91
               

               Conread position:
               12-197
               

               Cow position:
               chr10:19394858-19394667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               21, 34
               

               Conread position:
               12-197
               

               Cow position:
               chr10:37528885-37528683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 194
               

               Conread position:
               12-198
               

               Cow position:
               chr10:19094368-19094571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 192
               

               Conread position:
               12-198
               

               Cow position:
               chr10:23936204-23936405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               21, 192
               

               Conread position:
               12-198
               

               Cow position:
               chr10:35767358-35767159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 190
               

               Conread position:
               12-198
               

               Cow position:
               chr10:35857334-35857132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               12-198
               

               Cow position:
               chr10:49568924-49569123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 185
               

               Conread position:
               12-199
               

               Cow position:
               chr10:41737029-41737230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               57, 25
               

               Conread position:
               12-201
               

               Cow position:
               chr10:2394742-2394541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 176
               

               Conread position:
               12-201
               

               Cow position:
               chr10:46491309-46491113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               57, 93
               

               Conread position:
               12-201
               

               Cow position:
               chr10:54469662-54469469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               25, 69
               

               Conread position:
               12-203
               

               Cow position:
               chr10:22528181-22527974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               12-316
               

               Cow position:
               chr10:1087740-1088050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               25, 146
               

               Conread position:
               12-336
               

               Cow position:
               chr10:27362214-27362551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               25, 135
               

               Conread position:
               12-386
               

               Cow position:
               chr10:29279165-29279536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               12-403
               

               Cow position:
               chr10:15867956-15868359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               25, 182
               

               Conread position:
               12-442
               

               Cow position:
               chr10:28039211-28038788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 173
               

               Conread position:
               12-445
               

               Cow position:
               chr10:23097044-23096628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 91
               

               Conread position:
               12-447
               

               Cow position:
               chr10:52589972-52589526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               12-453
               

               Cow position:
               chr10:3998629-3999069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               320
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               12-453
               

               Cow position:
               chr10:6012313-6011891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               318
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               25, 162
               

               Conread position:
               12-454
               

               Cow position:
               chr10:21082116-21082550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               319
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               23, 165
               

               Conread position:
               12-455
               

               Cow position:
               chr10:15872142-15871710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               303
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               25, 182
               

               Conread position:
               12-455
               

               Cow position:
               chr10:42453858-42454282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               322
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               53, 145
               

               Conread position:
               12-455
               

               Cow position:
               chr10:48255503-48255062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               25, 145
               

               Conread position:
               12-455
               

               Cow position:
               chr10:48741437-48741001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               306
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               22, 146
               

               Conread position:
               12-455
               

               Cow position:
               chr10:60389038-60388600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               305
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               21, 87
               

               Conread position:
               12-457
               

               Cow position:
               chr10:24785825-24786273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               320
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               25, 194
               

               Conread position:
               12-457
               

               Cow position:
               chr10:51925140-51925602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 193
               

               Conread position:
               13-405
               

               Cow position:
               chr10:50534149-50533759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               58, 23
               

               Conread position:
               13-421
               

               Cow position:
               chr10:13311453-13311857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 162
               

               Conread position:
               13-447
               

               Cow position:
               chr10:721020-721463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 193
               

               Conread position:
               14-201
               

               Cow position:
               chr10:32503173-32503374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               23, 189
               

               Conread position:
               14-359
               

               Cow position:
               chr10:2185054-2185410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               21, 104
               

               Conread position:
               15-196
               

               Cow position:
               chr10:20735430-20735622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               28, 160
               

               Conread position:
               17-198
               

               Cow position:
               chr10:32417091-32417276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               49, 96
               

               Conread position:
               17-412
               

               Cow position:
               chr10:30523331-30522949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               266
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               20, 180
               

               Conread position:
               32-196
               

               Cow position:
               chr10:63883715-63883875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               104, 37
               

               Conread position:
               32-198
               

               Cow position:
               chr10:9445271-9445091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 171
               

               Conread position:
               32-370
               

               Cow position:
               chr10:28105330-28105005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               33, 70
               

               Conread position:
               41-196
               

               Cow position:
               chr10:11609358-11609530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               23, 165
               

               Conread position:
               80-452
               

               Cow position:
               chr10:37709229-37708848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               174, 15
               

               Conread position:
               81-385
               

               Cow position:
               chr10:4183996-4184285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 111
               

               Conread position:
               112-457
               

               Cow position:
               chr10:16683978-16683646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 82
               

               Conread position:
               212-451
               

               Cow position:
               chr10:4828101-4827864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               69, 35
               

               Conread position:
               212-457
               

               Cow position:
               chr10:23404122-23404363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 31
               

               Conread position:
               231-375
               

               Cow position:
               chr10:29359870-29360014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               21, 56
               

               Conread position:
               248-435
               

               Cow position:
               chr10:58746299-58746108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               250-438
               

               Cow position:
               chr10:15874121-15873934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               258-435
               

               Cow position:
               chr10:26620600-26620419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 83
               

               Conread position:
               259-453
               

               Cow position:
               chr10:1108501-1108302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               260-453
               

               Cow position:
               chr10:66311175-66311374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               18, 7
               

               Conread position:
               261-452
               

               Cow position:
               chr10:68251782-68251971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               137, 41
               

               Conread position:
               261-454
               

               Cow position:
               chr10:11316919-11317114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               47, 35
               

               Conread position:
               265-437
               

               Cow position:
               chr10:12100577-12100398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               266-377
               

               Cow position:
               chr10:13586673-13586785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               90
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               266-413
               

               Cow position:
               chr10:15425023-15425172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               120, 39
               

               Conread position:
               266-418
               

               Cow position:
               chr10:24871134-24871287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 131
               

               Conread position:
               266-457
               

               Cow position:
               chr10:69766716-69766518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               267-455
               

               Cow position:
               chr10:52244676-52244484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               268-435
               

               Cow position:
               chr10:28492496-28492324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               270-455
               

               Cow position:
               chr10:7095855-7096045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               38, 44
               

               Conread position:
               276-457
               

               Cow position:
               chr10:37400401-37400592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 89
               

               Conread position:
               289-453
               

               Cow position:
               chr10:61426742-61426574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               19, 51
               

               Conread position:
               294-451
               

               Cow position:
               chr10:49586469-49586307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               308-447
               

               Cow position:
               chr10:64364229-64364372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               310-450
               

               Cow position:
               chr10:25618563-25618700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               114, 25
               

               Conread position:
               1-429
               

               Cow position:
               chr11:43430733-43430312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               301
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               13, 153
               

               Conread position:
               2-198
               

               Cow position:
               chr11:60302243-60302032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 202
               

               Conread position:
               2-453
               

               Cow position:
               chr11:20491288-20491731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               315
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               11, 169
               

               Conread position:
               3-182
               

               Cow position:
               chr11:18484444-18484252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               11, 151
               

               Conread position:
               3-196
               

               Cow position:
               chr11:38638838-38639046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               11, 127
               

               Conread position:
               3-198
               

               Cow position:
               chr11:9837381-9837171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 201
               

               Conread position:
               3-199
               

               Cow position:
               chr11:67940422-67940626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               3-201
               

               Cow position:
               chr11:7334006-7333790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               11, 188
               

               Conread position:
               3-201
               

               Cow position:
               chr11:80012116-80011908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               11, 45
               

               Conread position:
               3-288
               

               Cow position:
               chr11:31885232-31885538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               8, 206
               

               Conread position:
               3-385
               

               Cow position:
               chr11:23138343-23137958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               3-454
               

               Cow position:
               chr11:43646701-43646242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 179
               

               Conread position:
               4-170
               

               Cow position:
               chr11:22978138-22977965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               67, 8
               

               Conread position:
               4-198
               

               Cow position:
               chr11:46451337-46451536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               30, 8
               

               Conread position:
               4-198
               

               Cow position:
               chr11:58990227-58990432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 168
               

               Conread position:
               4-201
               

               Cow position:
               chr11:57047244-57047038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               4-390
               

               Cow position:
               chr11:20601956-20602327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               10, 101
               

               Conread position:
               4-407
               

               Cow position:
               chr11:48474427-48474819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               29, 8
               

               Conread position:
               4-455
               

               Cow position:
               chr11:61427333-61427757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               5-201
               

               Cow position:
               chr11:25332009-25331808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               32, 7
               

               Conread position:
               6-198
               

               Cow position:
               chr11:18572524-18572730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 6
               

               Conread position:
               6-202
               

               Cow position:
               chr11:44642565-44642353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               27, 6
               

               Conread position:
               6-206
               

               Cow position:
               chr11:58614381-58614598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               6-451
               

               Cow position:
               chr11:18698595-18699055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               339
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               7-182
               

               Cow position:
               chr11:45646869-45646681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 5
               

               Conread position:
               7-385
               

               Cow position:
               chr11:1362759-1362372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               7-386
               

               Cow position:
               chr11:377930-377545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               26, 215
               

               Conread position:
               11-198
               

               Cow position:
               chr11:17112902-17112705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               21, 188
               

               Conread position:
               12-139
               

               Cow position:
               chr11:39034180-39034318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               12-191
               

               Cow position:
               chr11:41577279-41577091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               54, 25
               

               Conread position:
               12-195
               

               Cow position:
               chr11:21798677-21798866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               25, 158
               

               Conread position:
               12-195
               

               Cow position:
               chr11:62016544-62016350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               25, 188
               

               Conread position:
               12-195
               

               Cow position:
               chr11:73478349-73478546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               51, 25
               

               Conread position:
               12-198
               

               Cow position:
               chr11:8339679-8339479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 191
               

               Conread position:
               12-198
               

               Cow position:
               chr11:48901352-48901152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               25, 159
               

               Conread position:
               12-198
               

               Cow position:
               chr11:53130538-53130740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 193
               

               Conread position:
               12-201
               

               Cow position:
               chr11:8232838-8232638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               26, 156
               

               Conread position:
               12-201
               

               Cow position:
               chr11:13039404-13039212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               60, 28
               

               Conread position:
               12-201
               

               Cow position:
               chr11:24967191-24967386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               12-201
               

               Cow position:
               chr11:36496580-36496775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               25, 6
               

               Conread position:
               12-319
               

               Cow position:
               chr11:40486206-40485905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               12-356
               

               Cow position:
               chr11:23251877-23251526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               30, 148
               

               Conread position:
               12-384
               

               Cow position:
               chr11:84891026-84890623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               25, 196
               

               Conread position:
               12-385
               

               Cow position:
               chr11:62155356-62155734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               52, 25
               

               Conread position:
               12-450
               

               Cow position:
               chr11:48932857-48932405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               314
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               25, 192
               

               Conread position:
               12-452
               

               Cow position:
               chr11:28395173-28395642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               50, 28
               

               Conread position:
               12-455
               

               Cow position:
               chr11:77682905-77683341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               12-456
               

               Cow position:
               chr11:41271863-41272308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 170
               

               Conread position:
               12-457
               

               Cow position:
               chr11:12111742-12111284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               25, 148
               

               Conread position:
               13-369
               

               Cow position:
               chr11:51144444-51144793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               35, 191
               

               Conread position:
               13-407
               

               Cow position:
               chr11:48428821-48429224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               24, 103
               

               Conread position:
               13-457
               

               Cow position:
               chr11:11752792-11752345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 194
               

               Conread position:
               14-198
               

               Cow position:
               chr11:81174618-81174819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               23, 192
               

               Conread position:
               14-453
               

               Cow position:
               chr11:56821528-56821075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 198
               

               Conread position:
               15-197
               

               Cow position:
               chr11:35252254-35252065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               22, 96
               

               Conread position:
               15-198
               

               Cow position:
               chr11:75748164-75748362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               22, 155
               

               Conread position:
               17-199
               

               Cow position:
               chr11:35881642-35881842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               17-453
               

               Cow position:
               chr11:18145074-18144656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               312
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               25, 133
               

               Conread position:
               18-336
               

               Cow position:
               chr11:34032464-34032156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               48, 182
               

               Conread position:
               19-172
               

               Cow position:
               chr11:47125298-47125463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               18, 101
               

               Conread position:
               20-201
               

               Cow position:
               chr11:80824902-80825095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               17, 88
               

               Conread position:
               21-355
               

               Cow position:
               chr11:16262297-16261959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 132
               

               Conread position:
               32-457
               

               Cow position:
               chr11:16342494-16342057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               298
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               38, 125
               

               Conread position:
               34-420
               

               Cow position:
               chr11:64904745-64905130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               27, 153
               

               Conread position:
               71-457
               

               Cow position:
               chr11:33348389-33348008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 81
               

               Conread position:
               76-182
               

               Cow position:
               chr11:16233130-16233022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               77-445
               

               Cow position:
               chr11:27722163-27722552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 121
               

               Conread position:
               80-457
               

               Cow position:
               chr11:67236212-67236566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               270
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               16, 70
               

               Conread position:
               95-454
               

               Cow position:
               chr11:19501784-19502136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               154, 47
               

               Conread position:
               111-394
               

               Cow position:
               chr11:35775179-35775442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               197, 63
               

               Conread position:
               115-385
               

               Cow position:
               chr11:63435362-63435616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               59, 80
               

               Conread position:
               212-445
               

               Cow position:
               chr11:50937821-50937579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               213-457
               

               Cow position:
               chr11:31506774-31507019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               95, 35
               

               Conread position:
               215-454
               

               Cow position:
               chr11:21136743-21136982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 33
               

               Conread position:
               216-457
               

               Cow position:
               chr11:18785940-18785705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               172, 26
               

               Conread position:
               230-386
               

               Cow position:
               chr11:46952878-46953045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               230-389
               

               Cow position:
               chr11:35363422-35363580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               78, 26
               

               Conread position:
               230-453
               

               Cow position:
               chr11:54134148-54133920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               24, 137
               

               Conread position:
               231-422
               

               Cow position:
               chr11:14941669-14941476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               246-436
               

               Cow position:
               chr11:84775032-84775220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               247-454
               

               Cow position:
               chr11:19259556-19259344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               16, 6
               

               Conread position:
               247-457
               

               Cow position:
               chr11:52832764-52832555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               14, 24
               

               Conread position:
               248-455
               

               Cow position:
               chr11:67871644-67871434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               260-452
               

               Cow position:
               chr11:16232968-16232769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               6, 192
               

               Conread position:
               262-456
               

               Cow position:
               chr11:81518200-81518010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               138, 41
               

               Conread position:
               265-451
               

               Cow position:
               chr11:38639087-38639284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               265-457
               

               Cow position:
               chr11:72869843-72869652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               43, 90
               

               Conread position:
               266-386
               

               Cow position:
               chr11:29786523-29786402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               266-412
               

               Cow position:
               chr11:35536563-35536707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               266-457
               

               Cow position:
               chr11:27462122-27461920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               42, 48
               

               Conread position:
               266-457
               

               Cow position:
               chr11:42083448-42083644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               119, 39
               

               Conread position:
               267-455
               

               Cow position:
               chr11:24216118-24216306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               5, 41
               

               Conread position:
               268-451
               

               Cow position:
               chr11:9368806-9368991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               81, 40
               

               Conread position:
               269-456
               

               Cow position:
               chr11:79884467-79884665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               274-455
               

               Cow position:
               chr11:40269611-40269429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 150
               

               Conread position:
               279-451
               

               Cow position:
               chr11:8106057-8106226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               145, 28
               

               Conread position:
               287-456
               

               Cow position:
               chr11:29978340-29978163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               307-452
               

               Cow position:
               chr11:49218330-49218181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               310-454
               

               Cow position:
               chr11:54058012-54058159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               90, 29
               

               Conread position:
               2-197
               

               Cow position:
               chr12:40910595-40910382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 205
               

               Conread position:
               2-198
               

               Cow position:
               chr12:21486291-21486493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               3-180
               

               Cow position:
               chr12:44766779-44766971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               11, 148
               

               Conread position:
               3-386
               

               Cow position:
               chr12:6210461-6210082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               11, 215
               

               Conread position:
               3-443
               

               Cow position:
               chr12:16543872-16543442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               11, 113
               

               Conread position:
               3-454
               

               Cow position:
               chr12:33457846-33458287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 199
               

               Conread position:
               4-198
               

               Cow position:
               chr12:11583101-11583303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 151
               

               Conread position:
               4-385
               

               Cow position:
               chr12:6411031-6410659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               10, 196
               

               Conread position:
               4-412
               

               Cow position:
               chr12:30805552-30805958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               10, 201
               

               Conread position:
               4-451
               

               Cow position:
               chr12:6687566-6688048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               332
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               11, 106
               

               Conread position:
               5-195
               

               Cow position:
               chr12:25513610-25513793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               135, 9
               

               Conread position:
               6-454
               

               Cow position:
               chr12:31429859-31429426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               302
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               6-455
               

               Cow position:
               chr12:18769375-18768924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               332
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               19, 6
               

               Conread position:
               7-196
               

               Cow position:
               chr12:40270384-40270186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               8-385
               

               Cow position:
               chr12:29484190-29483812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               6, 155
               

               Conread position:
               9-457
               

               Cow position:
               chr12:5714331-5714787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               318
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               5, 198
               

               Conread position:
               12-166
               

               Cow position:
               chr12:14414036-14414199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               25, 119
               

               Conread position:
               12-172
               

               Cow position:
               chr12:9229776-9229601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               12-187
               

               Cow position:
               chr12:4116211-4116390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               24, 60
               

               Conread position:
               12-197
               

               Cow position:
               chr12:17881578-17881770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               21, 54
               

               Conread position:
               12-198
               

               Cow position:
               chr12:31228285-31228482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               54, 8
               

               Conread position:
               12-370
               

               Cow position:
               chr12:18518377-18518733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               25, 94
               

               Conread position:
               12-384
               

               Cow position:
               chr12:30919142-30919499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               57, 17
               

               Conread position:
               12-453
               

               Cow position:
               chr12:47803861-47804300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               316
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               25, 145
               

               Conread position:
               13-422
               

               Cow position:
               chr12:27039059-27038629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               14-196
               

               Cow position:
               chr12:28011191-28010993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               19, 191
               

               Conread position:
               14-453
               

               Cow position:
               chr12:5539258-5538827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               23, 151
               

               Conread position:
               16-198
               

               Cow position:
               chr12:22261104-22260916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               18, 76
               

               Conread position:
               19-448
               

               Cow position:
               chr12:37727860-37728289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               302
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               19-448
               

               Cow position:
               chr12:37733064-37732636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               296
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               29-193
               

               Cow position:
               chr12:18081818-18081643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               35, 125
               

               Conread position:
               96-436
               

               Cow position:
               chr12:27365731-27366055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 95
               

               Conread position:
               96-451
               

               Cow position:
               chr12:25312567-25312231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               328, 60
               

               Conread position:
               99-394
               

               Cow position:
               chr12:7299660-7299375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               207, 43
               

               Conread position:
               216-398
               

               Cow position:
               chr12:42285879-42286058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               91, 19
               

               Conread position:
               229-451
               

               Cow position:
               chr12:10763166-10763409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               230-457
               

               Cow position:
               chr12:9229583-9229347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               31, 23
               

               Conread position:
               238-404
               

               Cow position:
               chr12:25444836-25445007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               13, 164
               

               Conread position:
               248-455
               

               Cow position:
               chr12:47486769-47486985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               260-452
               

               Cow position:
               chr12:42477960-42478155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               6, 29
               

               Conread position:
               261-457
               

               Cow position:
               chr12:30413997-30413788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               261-457
               

               Cow position:
               chr12:44907967-44908163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               137, 39
               

               Conread position:
               262-450
               

               Cow position:
               chr12:17664427-17664610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               46, 23
               

               Conread position:
               265-386
               

               Cow position:
               chr12:31517217-31517095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               96
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               265-454
               

               Cow position:
               chr12:5680637-5680831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               265-456
               

               Cow position:
               chr12:34161368-34161571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               274-456
               

               Cow position:
               chr12:25933648-25933830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 66
               

               Conread position:
               289-456
               

               Cow position:
               chr12:11081121-11080950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               297-422
               

               Cow position:
               chr12:6123979-6124102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               100, 10
               

               Conread position:
               2-361
               

               Cow position:
               chr13:8201235-8201588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               39, 10
               

               Conread position:
               2-423
               

               Cow position:
               chr13:17970785-17971194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               283
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               3-140
               

               Cow position:
               chr13:29671190-29671341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-143
               

               Cow position:
               chr13:21107375-21107233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               3-198
               

               Cow position:
               chr13:9246965-9246761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               11, 165
               

               Conread position:
               3-201
               

               Cow position:
               chr13:46501555-46501337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               3-352
               

               Cow position:
               chr13:11954864-11955212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               34, 144
               

               Conread position:
               3-384
               

               Cow position:
               chr13:18166981-18166605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               11, 206
               

               Conread position:
               3-447
               

               Cow position:
               chr13:16343935-16343499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               318
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               3-454
               

               Cow position:
               chr13:34995075-34995530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 171
               

               Conread position:
               4-153
               

               Cow position:
               chr13:20879585-20879748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 54
               

               Conread position:
               4-192
               

               Cow position:
               chr13:17622532-17622325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               4-198
               

               Cow position:
               chr13:2414275-2414067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               11, 199
               

               Conread position:
               4-198
               

               Cow position:
               chr13:47313151-47312960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               65, 8
               

               Conread position:
               4-385
               

               Cow position:
               chr13:9142530-9142153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               267
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               60, 8
               

               Conread position:
               4-412
               

               Cow position:
               chr13:19393535-19393139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               290
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               4-457
               

               Cow position:
               chr13:6621348-6621794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 66
               

               Conread position:
               6-198
               

               Cow position:
               chr13:6079173-6079380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-198
               

               Cow position:
               chr13:37516890-37517098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               31, 7
               

               Conread position:
               6-201
               

               Cow position:
               chr13:1767013-1766806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               25, 6
               

               Conread position:
               6-201
               

               Cow position:
               chr13:18835432-18835228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-356
               

               Cow position:
               chr13:18244102-18243763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               6-368
               

               Cow position:
               chr13:38277889-38278259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               8, 223
               

               Conread position:
               6-385
               

               Cow position:
               chr13:43762413-43762041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               272
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               28, 6
               

               Conread position:
               8-198
               

               Cow position:
               chr13:60429833-60430036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               6, 190
               

               Conread position:
               8-441
               

               Cow position:
               chr13:28683604-28683176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               5, 125
               

               Conread position:
               11-452
               

               Cow position:
               chr13:42200860-42200404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               293
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               26, 193
               

               Conread position:
               12-195
               

               Cow position:
               chr13:15974851-15974654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               12-197
               

               Cow position:
               chr13:34931070-34931248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               12-198
               

               Cow position:
               chr13:7076497-7076297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 192
               

               Conread position:
               12-201
               

               Cow position:
               chr13:55843725-55843515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               25, 198
               

               Conread position:
               12-202
               

               Cow position:
               chr13:25927033-25926825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               21, 205
               

               Conread position:
               12-202
               

               Cow position:
               chr13:52894383-52894178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               56, 192
               

               Conread position:
               12-206
               

               Cow position:
               chr13:1839621-1839414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               56, 137
               

               Conread position:
               12-362
               

               Cow position:
               chr13:25531551-25531895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 17
               

               Conread position:
               12-370
               

               Cow position:
               chr13:45353283-45352919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               54, 25
               

               Conread position:
               12-400
               

               Cow position:
               chr13:38012602-38012187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               289
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               22, 199
               

               Conread position:
               12-404
               

               Cow position:
               chr13:20270975-20271369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               271
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               26, 143
               

               Conread position:
               12-437
               

               Cow position:
               chr13:23265970-23265548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               296
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               12-453
               

               Cow position:
               chr13:20180638-20180216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               25, 74
               

               Conread position:
               12-457
               

               Cow position:
               chr13:9803298-9802865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               315
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               47, 24
               

               Conread position:
               12-457
               

               Cow position:
               chr13:32773603-32773160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               305
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               25, 156
               

               Conread position:
               13-444
               

               Cow position:
               chr13:20466055-20466476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 24
               

               Conread position:
               13-447
               

               Cow position:
               chr13:8838754-8839175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               24, 186
               

               Conread position:
               14-197
               

               Cow position:
               chr13:20820602-20820796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 186
               

               Conread position:
               14-198
               

               Cow position:
               chr13:13266040-13265847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 181
               

               Conread position:
               14-385
               

               Cow position:
               chr13:56148778-56148393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 38
               

               Conread position:
               14-441
               

               Cow position:
               chr13:43194414-43193984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               23, 190
               

               Conread position:
               14-452
               

               Cow position:
               chr13:25434890-25435322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 106
               

               Conread position:
               15-196
               

               Cow position:
               chr13:41154808-41154991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               15-198
               

               Cow position:
               chr13:15869357-15869161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               19, 134
               

               Conread position:
               15-385
               

               Cow position:
               chr13:21276093-21275731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               22, 169
               

               Conread position:
               17-422
               

               Cow position:
               chr13:60650684-60651073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               287
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               22, 109
               

               Conread position:
               17-438
               

               Cow position:
               chr13:17347041-17346627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 155
               

               Conread position:
               17-457
               

               Cow position:
               chr13:51940965-51940525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 101
               

               Conread position:
               20-198
               

               Cow position:
               chr13:47963968-47964156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               17, 147
               

               Conread position:
               20-457
               

               Cow position:
               chr13:54095037-54094606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               21-198
               

               Cow position:
               chr13:54093972-54093783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               16, 95
               

               Conread position:
               29-381
               

               Cow position:
               chr13:32657584-32657924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 171
               

               Conread position:
               32-385
               

               Cow position:
               chr13:18491813-18491468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               82-457
               

               Cow position:
               chr13:47188602-47188240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               268
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               95-455
               

               Cow position:
               chr13:25537775-25537418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               89, 109
               

               Conread position:
               95-457
               

               Cow position:
               chr13:8245193-8245535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               46, 67
               

               Conread position:
               95-457
               

               Cow position:
               chr13:52251654-52252003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               190, 47
               

               Conread position:
               112-451
               

               Cow position:
               chr13:21563868-21563530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               45, 79
               

               Conread position:
               113-455
               

               Cow position:
               chr13:2803594-2803267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               23, 59
               

               Conread position:
               125-452
               

               Cow position:
               chr13:47322291-47322608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               20, 78
               

               Conread position:
               212-413
               

               Cow position:
               chr13:53788066-53788266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               223-386
               

               Cow position:
               chr13:6980959-6980792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               36, 151
               

               Conread position:
               223-454
               

               Cow position:
               chr13:33975467-33975232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 95
               

               Conread position:
               233-451
               

               Cow position:
               chr13:1558492-1558711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               75, 37
               

               Conread position:
               247-438
               

               Cow position:
               chr13:12207059-12206859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               247-452
               

               Cow position:
               chr13:32657390-32657184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               62, 178
               

               Conread position:
               248-444
               

               Cow position:
               chr13:13446145-13446345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               58, 117
               

               Conread position:
               261-451
               

               Cow position:
               chr13:52569006-52569201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               159
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               265-453
               

               Cow position:
               chr13:40885494-40885301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               27, 20
               

               Conread position:
               265-457
               

               Cow position:
               chr13:34665119-34664927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               266-385
               

               Cow position:
               chr13:19750707-19750587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               42, 66
               

               Conread position:
               266-386
               

               Cow position:
               chr13:24753879-24753758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               266-443
               

               Cow position:
               chr13:21295067-21294894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               42, 117
               

               Conread position:
               266-453
               

               Cow position:
               chr13:20520053-20519854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               267-456
               

               Cow position:
               chr13:22075660-22075468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               131, 70
               

               Conread position:
               280-455
               

               Cow position:
               chr13:2339155-2338974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               102, 27
               

               Conread position:
               280-457
               

               Cow position:
               chr13:18665713-18665535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               47, 23
               

               Conread position:
               286-454
               

               Cow position:
               chr13:26522965-26523137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               296-450
               

               Cow position:
               chr13:54564675-54564834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               307-456
               

               Cow position:
               chr13:56270287-56270442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               307-456
               

               Cow position:
               chr13:56281185-56281030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               1-439
               

               Cow position:
               chr14:47974290-47973856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               311
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               13, 203
               

               Conread position:
               2-183
               

               Cow position:
               chr14:38379330-38379131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               2-198
               

               Cow position:
               chr14:43046454-43046244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               15, 129
               

               Conread position:
               2-453
               

               Cow position:
               chr14:38355491-38355047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 10
               

               Conread position:
               3-190
               

               Cow position:
               chr14:15033065-15032864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               12, 119
               

               Conread position:
               3-198
               

               Cow position:
               chr14:27312731-27312522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               30, 11
               

               Conread position:
               3-198
               

               Cow position:
               chr14:41128199-41127990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               11, 34
               

               Conread position:
               3-437
               

               Cow position:
               chr14:12559175-12559603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               3-452
               

               Cow position:
               chr14:25231342-25231776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               314
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               33, 9
               

               Conread position:
               3-453
               

               Cow position:
               chr14:23107635-23107177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 204
               

               Conread position:
               3-456
               

               Cow position:
               chr14:26108949-26108488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 149
               

               Conread position:
               3-457
               

               Cow position:
               chr14:2189957-2189489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               325
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 102
               

               Conread position:
               3-457
               

               Cow position:
               chr14:25385583-25386032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 173
               

               Conread position:
               4-196
               

               Cow position:
               chr14:49021596-49021805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               10, 202
               

               Conread position:
               4-206
               

               Cow position:
               chr14:9255004-9255211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               65, 12
               

               Conread position:
               4-425
               

               Cow position:
               chr14:25779400-25778993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               4-447
               

               Cow position:
               chr14:47027069-47027508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 130
               

               Conread position:
               6-201
               

               Cow position:
               chr14:10907021-10906808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 6
               

               Conread position:
               6-429
               

               Cow position:
               chr14:18904304-18904724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               7-389
               

               Cow position:
               chr14:16834635-16834247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               7, 173
               

               Conread position:
               8-386
               

               Cow position:
               chr14:45605393-45605026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               6, 197
               

               Conread position:
               8-451
               

               Cow position:
               chr14:21018415-21017976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               6, 198
               

               Conread position:
               10-196
               

               Cow position:
               chr14:12613802-12613996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               12-196
               

               Cow position:
               chr14:19222178-19221979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               55, 192
               

               Conread position:
               12-198
               

               Cow position:
               chr14:5836203-5836003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               25, 180
               

               Conread position:
               12-198
               

               Cow position:
               chr14:12856894-12856697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 144
               

               Conread position:
               12-198
               

               Cow position:
               chr14:14621887-14622084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               25, 188
               

               Conread position:
               12-198
               

               Cow position:
               chr14:24992111-24991918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               25, 103
               

               Conread position:
               12-198
               

               Cow position:
               chr14:33828448-33828256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               25, 94
               

               Conread position:
               12-198
               

               Cow position:
               chr14:38143815-38144013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               21, 144
               

               Conread position:
               12-199
               

               Cow position:
               chr14:33247139-33247337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               25, 188
               

               Conread position:
               12-201
               

               Cow position:
               chr14:8784474-8784277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 183
               
12-201UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:12488403-12488606 (view  custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               21, 143
               
12-201UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:29605938-29606140 (view  custom track)

               
               
               
Alignm length: 207

               
               
               
Alignm identity: 156

               
               
               
Alignm E-value: 3e-26

               
               
               
Alignm gaps (pig, cow): 24, 163
12-201UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:30662286-30662079 (view  custom track)

               
               
               
Alignm length: 209

               
               
               
Alignm identity: 150

               
               
               
Alignm E-value: 6e-21

               
               
               
Alignm gaps (pig, cow): 21, 195

               
               
               Conread position:12-201
               
               
               Cow position:chr14:39769932-39770140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:12-364
               
               
               Cow position:chr14:34221353-34221011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:12-370
               
               
               Cow position:chr14:41180417-41180770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:12-454
               
               
               Cow position:chr14:18309011-18309462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:12-457
               
               
               Cow position:chr14:19863142-19863568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:13-197
               
               
               Cow position:chr14:48740588-48740774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:13-198
               
               
               Cow position:chr14:7270718-7270912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:13-198
               
               
               Cow position:chr14:21964414-21964214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:13-198
               
               
               Cow position:chr14:38921235-38921045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:15-457
               
               
               Cow position:chr14:13810233-13809789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:16-198
               
               
               Cow position:chr14:14466185-14466381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:17-198
               
               
               Cow position:chr14:8102072-8101886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 177

               
               
               Conread position:27-412
               
               
               Cow position:chr14:6541438-6541824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:32-451
               
               
               Cow position:chr14:21691003-21691416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 165

               
               
               Conread position:32-457
               
               
               Cow position:chr14:34355425-34355845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:95-447
               
               
               Cow position:chr14:11615022-11615358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:212-457
               
               
               Cow position:chr14:10692169-10692407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:262-428
               
               
               Cow position:chr14:20045603-20045435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:262-456
               
               
               Cow position:chr14:41531612-41531808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:264-455
               
               
               Cow position:chr14:16207447-16207652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:266-411
               
               
               Cow position:chr14:15491205-15491060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:266-434
               
               
               Cow position:chr14:12127361-12127539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-453
               
               
               Cow position:chr14:12954336-12954536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:267-446
               
               
               Cow position:chr14:25639724-25639907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:268-457
               
               
               Cow position:chr14:7647972-7648167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:271-454
               
               
               Cow position:chr14:44032079-44031891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:275-447
               
               
               Cow position:chr14:45849180-45849354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:280-388
               
               
               Cow position:chr14:37436675-37436784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:284-446
               
               
               Cow position:chr14:48399539-48399369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:293-455
               
               
               Cow position:chr14:47600388-47600550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:294-420
               
               
               Cow position:chr14:5400606-5400477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:296-452
               
               
               Cow position:chr14:24799689-24799849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:300-455
               
               
               Cow position:chr14:43314997-43314839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:335-453
               
               
               Cow position:chr14:8927672-8927550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr15:23703129-23702910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:3-154
               
               
               Cow position:chr15:20486862-20487026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr15:23775606-23775791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 140

               
               
               Conread position:3-194
               
               
               Cow position:chr15:17100361-17100564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 198

               
               
               Conread position:3-196
               
               
               Cow position:chr15:24038055-24038254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 192

               
               
               Conread position:3-198
               
               
               Cow position:chr15:14020824-14020615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:3-198
               
               
               Cow position:chr15:25666868-25667080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 203

               
               
               Conread position:3-201
               
               
               Cow position:chr15:6282583-6282792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:3-201
               
               
               Cow position:chr15:7962432-7962219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:3-369
               
               
               Cow position:chr15:4535262-4534903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:3-377
               
               
               Cow position:chr15:43248416-43248793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:3-457
               
               
               Cow position:chr15:20482482-20482946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:4-182
               
               
               Cow position:chr15:33976339-33976531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr15:36781984-36782180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:4-197
               
               
               Cow position:chr15:33679046-33678844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:4-198
               
               
               Cow position:chr15:1329749-1329960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr15:11362830-11363035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr15:21388815-21389026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:4-207
               
               
               Cow position:chr15:21801817-21802031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 166

               
               
               Conread position:6-193
               
               
               Cow position:chr15:42143205-42143002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:6-196
               
               
               Cow position:chr15:19403327-19403125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr15:18018260-18018063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr15:24044748-24044957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-384
               
               
               Cow position:chr15:16616544-16616169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:7-377
               
               
               Cow position:chr15:35642369-35641999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:8-442
               
               
               Cow position:chr15:10570270-10570698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:8-453
               
               
               Cow position:chr15:5722330-5722755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 96

               
               
               Conread position:11-429
               
               
               Cow position:chr15:28177808-28177383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:12-182
               
               
               Cow position:chr15:16583367-16583546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:12-187
               
               
               Cow position:chr15:26079025-26079209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:12-191
               
               
               Cow position:chr15:5984261-5984444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:12-195
               
               
               Cow position:chr15:23767920-23768119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-197
               
               
               Cow position:chr15:22938992-22939181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:12-198
               
               
               Cow position:chr15:5234660-5234859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:12-198
               
               
               Cow position:chr15:22751796-22751593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 160

               
               
               Conread position:12-454
               
               
               Cow position:chr15:15215365-15214920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):30, 194

               
               
               Conread position:14-386
               
               
               Cow position:chr15:20370124-20370479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:14-457
               
               
               Cow position:chr15:21894125-21893661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:14-457
               
               
               Cow position:chr15:37931426-37931853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:15-182
               
               
               Cow position:chr15:23180764-23180592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:15-453
               
               
               Cow position:chr15:50177437-50177013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:26-366
               
               
               Cow position:chr15:13387414-13387072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 183

               
               
               Conread position:55-457
               
               
               Cow position:chr15:24411700-24411321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:76-198
               
               
               Cow position:chr15:11646218-11646345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:95-413
               
               
               Cow position:chr15:9001207-9000905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:95-422
               
               
               Cow position:chr15:53045632-53045940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:95-451
               
               
               Cow position:chr15:37964786-37964454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:95-454
               
               
               Cow position:chr15:25689223-25688869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:95-456
               
               
               Cow position:chr15:12170489-12170145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):213, 82

               
               
               Conread position:98-454
               
               
               Cow position:chr15:2144889-2145230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:136-451
               
               
               Cow position:chr15:6749647-6749938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:212-454
               
               
               Cow position:chr15:8230420-8230659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:212-455
               
               
               Cow position:chr15:8022195-8021958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 24

               
               
               Conread position:216-394
               
               
               Cow position:chr15:35440936-35441110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:217-404
               
               
               Cow position:chr15:2141155-2141344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):6, 169

               
               
               Conread position:230-452
               
               
               Cow position:chr15:14020620-14020384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:230-452
               
               
               Cow position:chr15:52377674-52377447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:230-457
               
               
               Cow position:chr15:33625102-33624853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:237-386
               
               
               Cow position:chr15:16786799-16786651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:248-453
               
               
               Cow position:chr15:26933836-26934045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:250-388
               
               
               Cow position:chr15:17162307-17162168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:250-450
               
               
               Cow position:chr15:48486745-48486550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:260-399
               
               
               Cow position:chr15:40498191-40498331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:261-454
               
               
               Cow position:chr15:4508248-4508054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:266-385
               
               
               Cow position:chr15:39520264-39520144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-394
               
               
               Cow position:chr15:14176403-14176531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:275-386
               
               
               Cow position:chr15:8427349-8427461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-206
               
               
               Cow position:chr16:7498802-7499014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:3-172
               
               
               Cow position:chr16:54100102-54100272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 142

               
               
               Conread position:3-182
               
               
               Cow position:chr16:11619488-11619680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr16:32132263-32132470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 198

               
               
               Conread position:3-198
               
               
               Cow position:chr16:571181-570967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 205

               
               
               Conread position:3-200
               
               
               Cow position:chr16:50014264-50014477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 202

               
               
               Conread position:3-206
               
               
               Cow position:chr16:5740989-5741196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:3-206
               
               
               Cow position:chr16:36911297-36911091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:3-337
               
               
               Cow position:chr16:17606038-17606364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:3-386
               
               
               Cow position:chr16:18205705-18206074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:3-405
               
               
               Cow position:chr16:20634136-20633743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:3-453
               
               
               Cow position:chr16:18426919-18427365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 219

               
               
               Conread position:4-198
               
               
               Cow position:chr16:23483023-23483240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:4-198
               
               
               Cow position:chr16:43506063-43505856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 185

               
               
               Conread position:4-201
               
               
               Cow position:chr16:4499178-4499385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:4-388
               
               
               Cow position:chr16:43275757-43276134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:5-182
               
               
               Cow position:chr16:7082995-7082802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:6-182
               
               
               Cow position:chr16:55308790-55308605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-195
               
               
               Cow position:chr16:42242379-42242172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-197
               
               
               Cow position:chr16:33645753-33645958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-197
               
               
               Cow position:chr16:53086585-53086389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr16:18693391-18693189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr16:30939473-30939681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 6

               
               
               Conread position:6-199
               
               
               Cow position:chr16:14242114-14242318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:6-199
               
               
               Cow position:chr16:34168334-34168546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-385
               
               
               Cow position:chr16:49169643-49169267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-198
               
               
               Cow position:chr16:33226793-33226592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):6, 98

               
               
               Conread position:10-182
               
               
               Cow position:chr16:43804239-43804429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr16:49252996-49252811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:12-197
               
               
               Cow position:chr16:4699225-4699037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:12-198
               
               
               Cow position:chr16:590165-589970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:12-198
               
               
               Cow position:chr16:819995-820195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-198
               
               
               Cow position:chr16:8933675-8933477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 189

               
               
               Conread position:12-198
               
               
               Cow position:chr16:14754578-14754376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-198
               
               
               Cow position:chr16:39417365-39417171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:12-198
               
               
               Cow position:chr16:44973240-44973442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr16:49125776-49125582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 185

               
               
               Conread position:12-198
               
               
               Cow position:chr16:56150057-56150247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:12-199
               
               
               Cow position:chr16:23737928-23738127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:12-201
               
               
               Cow position:chr16:49126439-49126239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:12-206
               
               
               Cow position:chr16:16424860-16424650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 194

               
               
               Conread position:12-361
               
               
               Cow position:chr16:3246448-3246114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 179

               
               
               Conread position:12-362
               
               
               Cow position:chr16:5726673-5727024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:12-377
               
               
               Cow position:chr16:28833586-28833949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:12-383
               
               
               Cow position:chr16:13611701-13611342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-408
               
               
               Cow position:chr16:48340948-48340558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:12-421
               
               
               Cow position:chr16:16096483-16096887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:12-426
               
               
               Cow position:chr16:47662457-47662879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:12-436
               
               
               Cow position:chr16:37062648-37062236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:12-445
               
               
               Cow position:chr16:8315430-8315016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:12-454
               
               
               Cow position:chr16:34210669-34210223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:12-456
               
               
               Cow position:chr16:13660479-13660046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:13-196
               
               
               Cow position:chr16:15188943-15189125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:14-206
               
               
               Cow position:chr16:43851076-43850878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:14-457
               
               
               Cow position:chr16:23472496-23472950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 191

               
               
               Conread position:16-385
               
               
               Cow position:chr16:13195585-13195225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:17-455
               
               
               Cow position:chr16:48492935-48493368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:24-421
               
               
               Cow position:chr16:32837789-32837397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 180

               
               
               Conread position:32-199
               
               
               Cow position:chr16:51246729-51246896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:55-445
               
               
               Cow position:chr16:45692949-45693320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):253, 10

               
               
               Conread position:76-385
               
               
               Cow position:chr16:28396277-28395967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:76-450
               
               
               Cow position:chr16:19003252-19002909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:78-196
               
               
               Cow position:chr16:22808730-22808608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:79-437
               
               
               Cow position:chr16:689539-689872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):229, 16

               
               
               Conread position:85-456
               
               
               Cow position:chr16:15808808-15809166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:95-386
               
               
               Cow position:chr16:4399568-4399850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:106-438
               
               
               Cow position:chr16:27723066-27723400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:233-436
               
               
               Cow position:chr16:41711636-41711841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:246-457
               
               
               Cow position:chr16:46627868-46627657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:249-456
               
               
               Cow position:chr16:47909367-47909154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:250-419
               
               
               Cow position:chr16:37719135-37719308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:261-444
               
               
               Cow position:chr16:44581083-44580900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:265-396
               
               
               Cow position:chr16:9444954-9445084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:265-457
               
               
               Cow position:chr16:11772254-11772061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:266-407
               
               
               Cow position:chr16:29026202-29026341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:266-455
               
               
               Cow position:chr16:27261953-27261772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:266-455
               
               
               Cow position:chr16:29655319-29655520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:267-452
               
               
               Cow position:chr16:11085386-11085197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:267-457
               
               
               Cow position:chr16:5020073-5019892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:281-422
               
               
               Cow position:chr16:23978424-23978281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:293-439
               
               
               Cow position:chr16:10617833-10617682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:307-444
               
               
               Cow position:chr16:47963327-47963468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:312-452
               
               
               Cow position:chr16:20664331-20664472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:312-457
               
               
               Cow position:chr16:55070480-55070330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr17:9079409-9079216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-196
               
               
               Cow position:chr17:21313026-21312825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:3-197
               
               
               Cow position:chr17:20209034-20208842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:3-198
               
               
               Cow position:chr17:8690665-8690454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 202

               
               
               Conread position:3-198
               
               
               Cow position:chr17:9746296-9746502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-198
               
               
               Cow position:chr17:22032908-22032703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:3-199
               
               
               Cow position:chr17:9778026-9778236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:3-201
               
               
               Cow position:chr17:24761448-24761237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-203
               
               
               Cow position:chr17:38276467-38276680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:3-428
               
               
               Cow position:chr17:11216108-11215700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 195

               
               
               Conread position:3-452
               
               
               Cow position:chr17:20215947-20216390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:3-457
               
               
               Cow position:chr17:35388235-35387772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:4-191
               
               
               Cow position:chr17:30999554-30999752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr17:12059310-12059107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:4-206
               
               
               Cow position:chr17:13236948-13236730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:5-359
               
               
               Cow position:chr17:3781822-3782171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 200

               
               
               Conread position:6-139
               
               
               Cow position:chr17:14848743-14848600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-143
               
               
               Cow position:chr17:3387074-3387213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-191
               
               
               Cow position:chr17:39857196-39857375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:6-196
               
               
               Cow position:chr17:1295791-1295584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr17:23803248-23803449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-449
               
               
               Cow position:chr17:25815388-25815835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-453
               
               
               Cow position:chr17:32457800-32457346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-201
               
               
               Cow position:chr17:13244246-13244050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):5, 58

               
               
               Conread position:8-385
               
               
               Cow position:chr17:22563967-22564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:12-140
               
               
               Cow position:chr17:7423656-7423513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-172
               
               
               Cow position:chr17:15132951-15133117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr17:25078208-25078024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:12-197
               
               
               Cow position:chr17:21335913-21335708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 197

               
               
               Conread position:12-198
               
               
               Cow position:chr17:20839773-20839573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:12-198
               
               
               Cow position:chr17:30665059-30665259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:12-198
               
               
               Cow position:chr17:41290232-41290035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:12-199
               
               
               Cow position:chr17:42347436-42347237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 147

               
               
               Conread position:12-201
               
               
               Cow position:chr17:5041891-5041691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:12-201
               
               
               Cow position:chr17:21419217-21419427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:12-201
               
               
               Cow position:chr17:26084820-26085025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:12-206
               
               
               Cow position:chr17:33999259-33999053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:12-374
               
               
               Cow position:chr17:27697907-27697560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:12-384
               
               
               Cow position:chr17:25097248-25097607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-394
               
               
               Cow position:chr17:27047948-27048317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:12-453
               
               
               Cow position:chr17:24580514-24580071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 196

               
               
               Conread position:12-455
               
               
               Cow position:chr17:8279922-8279488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 192

               
               
               Conread position:13-198
               
               
               Cow position:chr17:8544096-8544295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:14-198
               
               
               Cow position:chr17:13143903-13143703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:14-199
               
               
               Cow position:chr17:11102007-11101812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:15-198
               
               
               Cow position:chr17:28539824-28540017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:15-201
               
               
               Cow position:chr17:1526565-1526364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:18-192
               
               
               Cow position:chr17:20848322-20848505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:32-356
               
               
               Cow position:chr17:6566278-6566606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:81-359
               
               
               Cow position:chr17:11962679-11962406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:95-388
               
               
               Cow position:chr17:31856546-31856828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):211, 50

               
               
               Conread position:95-406
               
               
               Cow position:chr17:41892181-41891887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):213, 46

               
               
               Conread position:114-449
               
               
               Cow position:chr17:11344119-11344426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 77

               
               
               Conread position:212-444
               
               
               Cow position:chr17:13716052-13715819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:212-456
               
               
               Cow position:chr17:10886420-10886184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:226-457
               
               
               Cow position:chr17:23147410-23147647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:230-439
               
               
               Cow position:chr17:5380953-5381162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:249-385
               
               
               Cow position:chr17:13600961-13600826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:256-457
               
               
               Cow position:chr17:27819319-27819520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:257-452
               
               
               Cow position:chr17:36173948-36173743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:265-432
               
               
               Cow position:chr17:33913542-33913371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-455
               
               
               Cow position:chr17:10769478-10769283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:266-396
               
               
               Cow position:chr17:4891329-4891198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-453
               
               
               Cow position:chr17:33925987-33925792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:268-374
               
               
               Cow position:chr17:43641063-43640956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:268-457
               
               
               Cow position:chr17:3620050-3619858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:269-445
               
               
               Cow position:chr17:19239842-19239663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:275-457
               
               
               Cow position:chr17:10314464-10314650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:280-454
               
               
               Cow position:chr17:14661489-14661320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:280-456
               
               
               Cow position:chr17:12768758-12768581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:284-433
               
               
               Cow position:chr17:5041354-5041201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:284-454
               
               
               Cow position:chr17:7163843-7163667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:294-454
               
               
               Cow position:chr17:9927420-9927584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:296-447
               
               
               Cow position:chr17:27809426-27809275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:300-450
               
               
               Cow position:chr17:25338234-25338385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:1-201
               
               
               Cow position:chr18:11191133-11191346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:2-201
               
               
               Cow position:chr18:13293211-13293428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-207
               
               
               Cow position:chr18:8105242-8105022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr18:36346355-36346194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr18:9010434-9010619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:3-182
               
               
               Cow position:chr18:10656148-10656342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr18:19159262-19159059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:3-197
               
               
               Cow position:chr18:47931158-47930952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:3-198
               
               
               Cow position:chr18:3180121-3180334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 205

               
               
               Conread position:3-198
               
               
               Cow position:chr18:33606338-33606545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:3-198
               
               
               Cow position:chr18:42747300-42747506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:3-385
               
               
               Cow position:chr18:33157523-33157895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:3-449
               
               
               Cow position:chr18:51298183-51298627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 201

               
               
               Conread position:3-457
               
               
               Cow position:chr18:20127400-20126952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 156

               
               
               Conread position:4-186
               
               
               Cow position:chr18:13508024-13507838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:4-196
               
               
               Cow position:chr18:5189974-5189776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:4-197
               
               
               Cow position:chr18:22121179-22120968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 200

               
               
               Conread position:4-198
               
               
               Cow position:chr18:11166684-11166894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr18:55552670-55552886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr18:6881633-6881433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:6-201
               
               
               Cow position:chr18:29768621-29768833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:7-198
               
               
               Cow position:chr18:268103-267903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:8-201
               
               
               Cow position:chr18:48036489-48036693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:8-229
               
               
               Cow position:chr18:32860355-32860586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 193

               
               
               Conread position:8-453
               
               
               Cow position:chr18:18340246-18339792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 22

               
               
               Conread position:11-191
               
               
               Cow position:chr18:11867062-11867248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:12-196
               
               
               Cow position:chr18:16847410-16847604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 187

               
               
               Conread position:12-198
               
               
               Cow position:chr18:5766141-5766326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:12-198
               
               
               Cow position:chr18:13359774-13359978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 153

               
               
               Conread position:12-201
               
               
               Cow position:chr18:45961547-45961352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:12-233
               
               
               Cow position:chr18:52382410-52382633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:12-349
               
               
               Cow position:chr18:14815623-14815304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:12-389
               
               
               Cow position:chr18:55498778-55499155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-411
               
               
               Cow position:chr18:23424640-23425026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:13-135
               
               
               Cow position:chr18:4673040-4673164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:13-149
               
               
               Cow position:chr18:28800821-28800689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:13-196
               
               
               Cow position:chr18:56159178-56159373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:16-455
               
               
               Cow position:chr18:47525122-47525565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:25-453
               
               
               Cow position:chr18:5711943-5711506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 236

               
               
               Conread position:32-192
               
               
               Cow position:chr18:49665418-49665249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:32-200
               
               
               Cow position:chr18:1495039-1495220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:32-452
               
               
               Cow position:chr18:29796691-29796279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:73-454
               
               
               Cow position:chr18:50700459-50700837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:76-201
               
               
               Cow position:chr18:43463618-43463491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:76-454
               
               
               Cow position:chr18:24856058-24855695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:80-413
               
               
               Cow position:chr18:38344599-38344914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:95-456
               
               
               Cow position:chr18:22411806-22411462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 50

               
               
               Conread position:95-457
               
               
               Cow position:chr18:10101302-10101641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:97-388
               
               
               Cow position:chr18:22143724-22143438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):209, 101

               
               
               Conread position:100-456
               
               
               Cow position:chr18:46321171-46320828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):233, 57

               
               
               Conread position:118-456
               
               
               Cow position:chr18:9154717-9155044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:212-457
               
               
               Cow position:chr18:51271842-51271589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:226-455
               
               
               Cow position:chr18:44493564-44493332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:230-377
               
               
               Cow position:chr18:46048668-46048824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:249-455
               
               
               Cow position:chr18:52583933-52584131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:257-452
               
               
               Cow position:chr18:15689237-15689429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:258-444
               
               
               Cow position:chr18:248860-248672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:260-422
               
               
               Cow position:chr18:16298059-16298224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:261-456
               
               
               Cow position:chr18:26372876-26373075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:262-455
               
               
               Cow position:chr18:26843142-26842945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 181

               
               
               Conread position:266-450
               
               
               Cow position:chr18:50359292-50359492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:267-455
               
               
               Cow position:chr18:6157879-6158062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:276-452
               
               
               Cow position:chr18:48036789-48036968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:278-457
               
               
               Cow position:chr18:40035964-40036136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:282-457
               
               
               Cow position:chr18:48717961-48717790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:293-456
               
               
               Cow position:chr18:29949737-29949899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:325-452
               
               
               Cow position:chr18:23807619-23807488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:2-184
               
               
               Cow position:chr19:33882433-33882242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:2-198
               
               
               Cow position:chr19:32457364-32457579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:2-455
               
               
               Cow position:chr19:56063706-56063248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):33, 211

               
               
               Conread position:3-139
               
               
               Cow position:chr19:24423738-24423883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:3-182
               
               
               Cow position:chr19:7492164-7492355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr19:13316678-13316483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:3-198
               
               
               Cow position:chr19:10080792-10081003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:3-198
               
               
               Cow position:chr19:14993197-14992987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:3-202
               
               
               Cow position:chr19:35380824-35380609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:3-366
               
               
               Cow position:chr19:47109766-47110124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-457
               
               
               Cow position:chr19:42694713-42695185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:341
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:4-196
               
               
               Cow position:chr19:17273996-17273796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:4-198
               
               
               Cow position:chr19:40051661-40051456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:5-198
               
               
               Cow position:chr19:48409245-48409446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:6-196
               
               
               Cow position:chr19:33932413-33932215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr19:2734177-2734386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr19:23005637-23005425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr19:3119314-3119517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 158

               
               
               Conread position:6-385
               
               
               Cow position:chr19:6417328-6417711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:6-445
               
               
               Cow position:chr19:38907623-38907196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):63, 6

               
               
               Conread position:8-197
               
               
               Cow position:chr19:36379979-36380178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:12-193
               
               
               Cow position:chr19:31826843-31827032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:12-196
               
               
               Cow position:chr19:38638068-38637872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:12-197
               
               
               Cow position:chr19:990676-990485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:12-197
               
               
               Cow position:chr19:8839336-8839537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr19:630679-630867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:12-198
               
               
               Cow position:chr19:44757873-44757684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:12-201
               
               
               Cow position:chr19:42240558-42240353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-205
               
               
               Cow position:chr19:38396538-38396336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:12-386
               
               
               Cow position:chr19:14592784-14593158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:12-386
               
               
               Cow position:chr19:27180526-27180148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 173

               
               
               Conread position:12-422
               
               
               Cow position:chr19:53738068-53738474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 182

               
               
               Conread position:12-446
               
               
               Cow position:chr19:36461793-36461361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:12-455
               
               
               Cow position:chr19:9387367-9387810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:12-456
               
               
               Cow position:chr19:40449765-40450197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:13-197
               
               
               Cow position:chr19:3246300-3246117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:15-198
               
               
               Cow position:chr19:27348525-27348335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:15-198
               
               
               Cow position:chr19:38340238-38340044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:19-197
               
               
               Cow position:chr19:2589252-2589443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:30-206
               
               
               Cow position:chr19:32989637-32989457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:33-201
               
               
               Cow position:chr19:13129638-13129811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:76-356
               
               
               Cow position:chr19:22450124-22449853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:80-451
               
               
               Cow position:chr19:48478795-48479147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:96-454
               
               
               Cow position:chr19:31535961-31536301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:97-417
               
               
               Cow position:chr19:10556874-10557189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 140

               
               
               Conread position:115-457
               
               
               Cow position:chr19:10971260-10970912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:120-443
               
               
               Cow position:chr19:29115600-29115911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):266, 69

               
               
               Conread position:212-454
               
               
               Cow position:chr19:31984717-31984475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:231-452
               
               
               Cow position:chr19:33882240-33882019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:246-455
               
               
               Cow position:chr19:12040582-12040794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:261-451
               
               
               Cow position:chr19:35344904-35345100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:265-454
               
               
               Cow position:chr19:46713618-46713817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:265-457
               
               
               Cow position:chr19:26003634-26003436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:267-448
               
               
               Cow position:chr19:4824997-4824813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:268-453
               
               
               Cow position:chr19:36245509-36245318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:270-422
               
               
               Cow position:chr19:5653343-5653193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:284-454
               
               
               Cow position:chr19:1153206-1153381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:289-445
               
               
               Cow position:chr19:42102591-42102434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:321-457
               
               
               Cow position:chr19:30653054-30652914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr2:44065327-44065524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:1-198
               
               
               Cow position:chr2:68084249-68084461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:2-201
               
               
               Cow position:chr2:50606283-50606497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:3-187
               
               
               Cow position:chr2:22372210-22372009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr2:21416049-21416252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:3-198
               
               
               Cow position:chr2:45623760-45623964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:3-198
               
               
               Cow position:chr2:79403844-79404049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:3-198
               
               
               Cow position:chr2:85246597-85246381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 207

               
               
               Conread position:3-201
               
               
               Cow position:chr2:63865597-63865377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 192

               
               
               Conread position:3-203
               
               
               Cow position:chr2:39068044-39068258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-203
               
               
               Cow position:chr2:45469739-45469959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 207

               
               
               Conread position:3-324
               
               
               Cow position:chr2:45881032-45880723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:3-385
               
               
               Cow position:chr2:23271191-23270819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:3-402
               
               
               Cow position:chr2:38376624-38377031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 175

               
               
               Conread position:3-409
               
               
               Cow position:chr2:46189355-46188960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:3-412
               
               
               Cow position:chr2:37113463-37113057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 133

               
               
               Conread position:3-435
               
               
               Cow position:chr2:22859902-22859465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:3-441
               
               
               Cow position:chr2:4384155-4383724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:3-455
               
               
               Cow position:chr2:38206028-38205574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:4-182
               
               
               Cow position:chr2:53574846-53575036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-192
               
               
               Cow position:chr2:2688909-2689109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:4-196
               
               
               Cow position:chr2:45554056-45554260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:4-196
               
               
               Cow position:chr2:62685372-62685581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 204

               
               
               Conread position:4-197
               
               
               Cow position:chr2:62978929-62978726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:4-201
               
               
               Cow position:chr2:10656101-10655909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:4-202
               
               
               Cow position:chr2:32408739-32408539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:4-332
               
               
               Cow position:chr2:51594503-51594826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-361
               
               
               Cow position:chr2:2740223-2740550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:4-386
               
               
               Cow position:chr2:549578-549215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:4-420
               
               
               Cow position:chr2:41461100-41461520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 205

               
               
               Conread position:4-448
               
               
               Cow position:chr2:11734250-11734704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:6-198
               
               
               Cow position:chr2:23493274-23493485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-457
               
               
               Cow position:chr2:51799579-51799130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:11-196
               
               
               Cow position:chr2:15674291-15674489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:11-386
               
               
               Cow position:chr2:44081193-44081551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:12-182
               
               
               Cow position:chr2:485364-485551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr2:37009163-37009351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr2:4922376-4922179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:12-196
               
               
               Cow position:chr2:51824673-51824869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:12-197
               
               
               Cow position:chr2:19212298-19212106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:12-197
               
               
               Cow position:chr2:47072936-47073140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 149

               
               
               Conread position:12-197
               
               
               Cow position:chr2:61485381-61485571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:12-198
               
               
               Cow position:chr2:14349540-14349733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:12-198
               
               
               Cow position:chr2:14854068-14854262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:12-198
               
               
               Cow position:chr2:36007831-36007638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-198
               
               
               Cow position:chr2:43609347-43609158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:12-199
               
               
               Cow position:chr2:17940541-17940337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:12-201
               
               
               Cow position:chr2:52344507-52344705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 186

               
               
               Conread position:12-393
               
               
               Cow position:chr2:14089525-14089915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:12-412
               
               
               Cow position:chr2:13582329-13582723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-453
               
               
               Cow position:chr2:425567-425998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:12-454
               
               
               Cow position:chr2:41313634-41314074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:12-455
               
               
               Cow position:chr2:31457233-31457676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:12-455
               
               
               Cow position:chr2:82581186-82580730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-456
               
               
               Cow position:chr2:29382928-29382488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:12-456
               
               
               Cow position:chr2:33659957-33659513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):21, 167

               
               
               Conread position:12-457
               
               
               Cow position:chr2:24593638-24594069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:13-201
               
               
               Cow position:chr2:45499451-45499252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:13-206
               
               
               Cow position:chr2:47990186-47990390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 188

               
               
               Conread position:13-385
               
               
               Cow position:chr2:7193948-7194322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 155

               
               
               Conread position:13-386
               
               
               Cow position:chr2:1303698-1304064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:13-450
               
               
               Cow position:chr2:45665779-45666205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 187

               
               
               Conread position:13-454
               
               
               Cow position:chr2:48748978-48748544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:14-210
               
               
               Cow position:chr2:63288402-63288197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 186

               
               
               Conread position:15-199
               
               
               Cow position:chr2:13369409-13369604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:15-457
               
               
               Cow position:chr2:30639939-30640395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):22, 166

               
               
               Conread position:16-411
               
               
               Cow position:chr2:50352613-50353032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:19-206
               
               
               Cow position:chr2:14396487-14396288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:21-370
               
               
               Cow position:chr2:46204262-46204614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:21-454
               
               
               Cow position:chr2:66480423-66479995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:24-404
               
               
               Cow position:chr2:80904168-80903783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:26-201
               
               
               Cow position:chr2:50400178-50400375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 185

               
               
               Conread position:32-196
               
               
               Cow position:chr2:80963878-80963701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:70-198
               
               
               Cow position:chr2:60463002-60462873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:70-198
               
               
               Cow position:chr2:60468381-60468252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:76-203
               
               
               Cow position:chr2:19154128-19154260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:76-377
               
               
               Cow position:chr2:83183962-83184260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:78-454
               
               
               Cow position:chr2:70663835-70664204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:79-450
               
               
               Cow position:chr2:72902468-72902106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:80-198
               
               
               Cow position:chr2:13604298-13604415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:95-198
               
               
               Cow position:chr2:9324839-9324943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 93

               
               
               Conread position:95-414
               
               
               Cow position:chr2:63488829-63489147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:95-457
               
               
               Cow position:chr2:54253198-54253569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:115-452
               
               
               Cow position:chr2:50793605-50793920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):149, 32

               
               
               Conread position:212-377
               
               
               Cow position:chr2:39672806-39672642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:216-385
               
               
               Cow position:chr2:30351756-30351592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:216-450
               
               
               Cow position:chr2:64213012-64213243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):182, 20

               
               
               Conread position:229-455
               
               
               Cow position:chr2:36998100-36998322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:230-455
               
               
               Cow position:chr2:29032655-29032891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 213

               
               
               Conread position:230-456
               
               
               Cow position:chr2:50580316-50580540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:230-457
               
               
               Cow position:chr2:41057572-41057337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 208

               
               
               Conread position:232-454
               
               
               Cow position:chr2:56797103-56796888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:238-385
               
               
               Cow position:chr2:23981546-23981697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:246-450
               
               
               Cow position:chr2:20250684-20250889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:248-441
               
               
               Cow position:chr2:68982033-68981836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:257-450
               
               
               Cow position:chr2:50591762-50591964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:259-454
               
               
               Cow position:chr2:46783503-46783702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:261-445
               
               
               Cow position:chr2:56752913-56752725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 170

               
               
               Conread position:262-456
               
               
               Cow position:chr2:52747330-52747146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:262-457
               
               
               Cow position:chr2:7498569-7498764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):139, 41

               
               
               Conread position:265-451
               
               
               Cow position:chr2:16018239-16018049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:265-452
               
               
               Cow position:chr2:17341880-17342062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:265-454
               
               
               Cow position:chr2:14734098-14734282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:266-385
               
               
               Cow position:chr2:64773379-64773499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-451
               
               
               Cow position:chr2:53501041-53500844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:267-436
               
               
               Cow position:chr2:2937562-2937726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:268-385
               
               
               Cow position:chr2:24722275-24722157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:270-444
               
               
               Cow position:chr2:61181626-61181806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:282-446
               
               
               Cow position:chr2:64973440-64973608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:293-455
               
               
               Cow position:chr2:51041594-51041426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:297-457
               
               
               Cow position:chr2:2690056-2690224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:344-456
               
               
               Cow position:chr2:17841706-17841592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr20:14735454-14735663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 202

               
               
               Conread position:3-198
               
               
               Cow position:chr20:7442347-7442138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:3-198
               
               
               Cow position:chr20:18185356-18185556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:3-198
               
               
               Cow position:chr20:20312960-20312757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 194

               
               
               Conread position:3-198
               
               
               Cow position:chr20:24398855-24398644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr20:29633212-29633009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:3-201
               
               
               Cow position:chr20:12420844-12420627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:3-201
               
               
               Cow position:chr20:18618416-18618626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:3-457
               
               
               Cow position:chr20:10838442-10837984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:4-196
               
               
               Cow position:chr20:4621559-4621357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr20:14831833-14831622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:4-323
               
               
               Cow position:chr20:6571110-6571429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:4-451
               
               
               Cow position:chr20:39405548-39405984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:306
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:4-453
               
               
               Cow position:chr20:10759685-10759247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:5-456
               
               
               Cow position:chr20:35364833-35365267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:6-318
               
               
               Cow position:chr20:13967476-13967167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:6-454
               
               
               Cow position:chr20:17363908-17363430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:7-201
               
               
               Cow position:chr20:38768672-38768464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 194

               
               
               Conread position:11-182
               
               
               Cow position:chr20:27339853-27340037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:12-198
               
               
               Cow position:chr20:6096698-6096504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:12-198
               
               
               Cow position:chr20:12334169-12334364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:12-198
               
               
               Cow position:chr20:35958436-35958635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:12-199
               
               
               Cow position:chr20:8020682-8020888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:12-201
               
               
               Cow position:chr20:7182889-7182682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:12-386
               
               
               Cow position:chr20:26076872-26077239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:12-403
               
               
               Cow position:chr20:17251498-17251890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:12-421
               
               
               Cow position:chr20:12996222-12995816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:12-429
               
               
               Cow position:chr20:39728236-39728648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-444
               
               
               Cow position:chr20:6903116-6903531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:12-455
               
               
               Cow position:chr20:25823071-25823506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:12-455
               
               
               Cow position:chr20:35843325-35842899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:12-457
               
               
               Cow position:chr20:20359984-20359552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:13-198
               
               
               Cow position:chr20:9473826-9473625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:13-362
               
               
               Cow position:chr20:32578132-32577789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 157

               
               
               Conread position:14-456
               
               
               Cow position:chr20:33170085-33169623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:16-453
               
               
               Cow position:chr20:14806677-14807129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 189

               
               
               Conread position:48-404
               
               
               Cow position:chr20:20934928-20934558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:76-420
               
               
               Cow position:chr20:30648343-30648008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:78-456
               
               
               Cow position:chr20:41110244-41109867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:79-445
               
               
               Cow position:chr20:1575964-1576312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:230-455
               
               
               Cow position:chr20:21236659-21236877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:247-451
               
               
               Cow position:chr20:9706903-9706693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:248-453
               
               
               Cow position:chr20:24849824-24850026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:248-457
               
               
               Cow position:chr20:23163882-23163674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):135, 59

               
               
               Conread position:250-452
               
               
               Cow position:chr20:4934049-4933844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:265-450
               
               
               Cow position:chr20:2430579-2430763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:265-455
               
               
               Cow position:chr20:4157457-4157645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:273-457
               
               
               Cow position:chr20:2487188-2487375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:276-396
               
               
               Cow position:chr20:6053422-6053301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:276-449
               
               
               Cow position:chr20:33532349-33532532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:280-456
               
               
               Cow position:chr20:39285010-39285192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:287-456
               
               
               Cow position:chr20:13617283-13617462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:290-448
               
               
               Cow position:chr20:8445088-8444926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:295-448
               
               
               Cow position:chr20:14513097-14513250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:304-454
               
               
               Cow position:chr20:6571690-6571837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:2-198
               
               
               Cow position:chr21:34391173-34390965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 199

               
               
               Conread position:3-154
               
               
               Cow position:chr21:13256604-13256770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-198
               
               
               Cow position:chr21:45355636-45355846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-200
               
               
               Cow position:chr21:43357461-43357246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:3-201
               
               
               Cow position:chr21:18850420-18850215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:3-206
               
               
               Cow position:chr21:34739647-34739859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:3-445
               
               
               Cow position:chr21:4276796-4276363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:3-454
               
               
               Cow position:chr21:8206588-8207025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:4-197
               
               
               Cow position:chr21:31676299-31676508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr21:47067086-47066885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:4-385
               
               
               Cow position:chr21:29484785-29485155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:4-386
               
               
               Cow position:chr21:9416043-9416426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:4-386
               
               
               Cow position:chr21:27229994-27229617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-404
               
               
               Cow position:chr21:13585259-13584867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:4-407
               
               
               Cow position:chr21:4399598-4400000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:4-452
               
               
               Cow position:chr21:31662259-31662713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 212

               
               
               Conread position:4-454
               
               
               Cow position:chr21:3236333-3236771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:4-455
               
               
               Cow position:chr21:3253965-3254402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:5-187
               
               
               Cow position:chr21:37322490-37322302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:6-187
               
               
               Cow position:chr21:20910290-20910095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:6-191
               
               
               Cow position:chr21:47802457-47802253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr21:40058609-40058815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:6-199
               
               
               Cow position:chr21:3585553-3585356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-336
               
               
               Cow position:chr21:15584600-15584291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:6-457
               
               
               Cow position:chr21:30150466-30149993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:321
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:7-201
               
               
               Cow position:chr21:21077133-21077339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:9-389
               
               
               Cow position:chr21:36762857-36763242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:11-196
               
               
               Cow position:chr21:395683-395878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:11-454
               
               
               Cow position:chr21:32574540-32574970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:12-196
               
               
               Cow position:chr21:15445271-15445065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 197

               
               
               Conread position:12-197
               
               
               Cow position:chr21:38900581-38900787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 200

               
               
               Conread position:12-198
               
               
               Cow position:chr21:48484633-48484437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-360
               
               
               Cow position:chr21:39401408-39401742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:12-385
               
               
               Cow position:chr21:10263851-10264209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-389
               
               
               Cow position:chr21:42414294-42413917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:12-450
               
               
               Cow position:chr21:23801313-23800888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:12-455
               
               
               Cow position:chr21:33727653-33727211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:12-456
               
               
               Cow position:chr21:33997414-33996980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:13-198
               
               
               Cow position:chr21:32237106-32237305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr21:28944555-28944352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 144

               
               
               Conread position:13-454
               
               
               Cow position:chr21:30849130-30848680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:13-455
               
               
               Cow position:chr21:15742282-15741833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:15-201
               
               
               Cow position:chr21:22860813-22861012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 187

               
               
               Conread position:15-203
               
               
               Cow position:chr21:363466-363665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:21-153
               
               
               Cow position:chr21:1510890-1511033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:21-385
               
               
               Cow position:chr21:15976460-15976809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:29-454
               
               
               Cow position:chr21:25800235-25800644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:62-445
               
               
               Cow position:chr21:46607720-46607353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:73-451
               
               
               Cow position:chr21:29978874-29978511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:95-457
               
               
               Cow position:chr21:9940288-9939940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:230-370
               
               
               Cow position:chr21:38268040-38267900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:230-450
               
               
               Cow position:chr21:21223290-21223526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:246-457
               
               
               Cow position:chr21:45355868-45356086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:250-457
               
               
               Cow position:chr21:31576537-31576740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:259-452
               
               
               Cow position:chr21:26753541-26753732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:261-457
               
               
               Cow position:chr21:11675997-11675801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:265-453
               
               
               Cow position:chr21:12301455-12301263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:265-455
               
               
               Cow position:chr21:37235441-37235632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:274-456
               
               
               Cow position:chr21:17807068-17806888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:276-456
               
               
               Cow position:chr21:34739911-34740096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:282-452
               
               
               Cow position:chr21:26147151-26147325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:283-454
               
               
               Cow position:chr21:22398236-22398397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:284-433
               
               
               Cow position:chr21:25159247-25159395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:308-457
               
               
               Cow position:chr21:43344996-43345145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:1-193
               
               
               Cow position:chr22:5836964-5837166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:1-386
               
               
               Cow position:chr22:13840873-13841250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:2-192
               
               
               Cow position:chr22:32480735-32480541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:2-201
               
               
               Cow position:chr22:41271262-41271053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 197

               
               
               Conread position:2-203
               
               
               Cow position:chr22:25476794-25477008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:3-193
               
               
               Cow position:chr22:34750408-34750617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr22:13235277-13235480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:3-198
               
               
               Cow position:chr22:14602664-14602454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr22:23854713-23854917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:3-201
               
               
               Cow position:chr22:2623783-2623573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 198

               
               
               Conread position:3-203
               
               
               Cow position:chr22:10685351-10685139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-450
               
               
               Cow position:chr22:19787948-19787504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 205

               
               
               Conread position:3-453
               
               
               Cow position:chr22:27223865-27224309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:3-454
               
               
               Cow position:chr22:41244977-41245432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 186

               
               
               Conread position:4-182
               
               
               Cow position:chr22:11489276-11489461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr22:37201589-37201797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:4-200
               
               
               Cow position:chr22:15398844-15398631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr22:7979449-7979650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-206
               
               
               Cow position:chr22:28058309-28058102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:4-386
               
               
               Cow position:chr22:26339493-26339863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-412
               
               
               Cow position:chr22:4076166-4075749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 151

               
               
               Conread position:4-435
               
               
               Cow position:chr22:23856782-23857203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:6-356
               
               
               Cow position:chr22:34398719-34398375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:6-359
               
               
               Cow position:chr22:34476264-34475916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-455
               
               
               Cow position:chr22:26184424-26183980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:6-456
               
               
               Cow position:chr22:9520886-9521317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 6

               
               
               Conread position:10-198
               
               
               Cow position:chr22:26658794-26658997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:12-196
               
               
               Cow position:chr22:610188-609996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:12-197
               
               
               Cow position:chr22:10683924-10683718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:12-201
               
               
               Cow position:chr22:32221403-32221590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:12-208
               
               
               Cow position:chr22:11987476-11987261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 194

               
               
               Conread position:12-368
               
               
               Cow position:chr22:1975353-1975702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:12-370
               
               
               Cow position:chr22:4583311-4583657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:12-394
               
               
               Cow position:chr22:14005892-14006297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 222

               
               
               Conread position:12-396
               
               
               Cow position:chr22:13274214-13274601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:12-432
               
               
               Cow position:chr22:4650922-4651340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:12-457
               
               
               Cow position:chr22:19048062-19047628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:12-457
               
               
               Cow position:chr22:23581080-23580660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:14-385
               
               
               Cow position:chr22:24066492-24066123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 190

               
               
               Conread position:15-191
               
               
               Cow position:chr22:1991233-1991414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:15-197
               
               
               Cow position:chr22:28731430-28731617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:19-205
               
               
               Cow position:chr22:12946418-12946216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 184

               
               
               Conread position:48-198
               
               
               Cow position:chr22:23403852-23403705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:68-396
               
               
               Cow position:chr22:7102646-7102953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):240, 29

               
               
               Conread position:76-386
               
               
               Cow position:chr22:1848880-1849185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:95-206
               
               
               Cow position:chr22:1081344-1081456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 93

               
               
               Conread position:95-444
               
               
               Cow position:chr22:42946217-42945881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:95-451
               
               
               Cow position:chr22:15358082-15358426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:212-443
               
               
               Cow position:chr22:26941733-26941959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:229-444
               
               
               Cow position:chr22:8397878-8397654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:230-452
               
               
               Cow position:chr22:4753806-4753576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:259-454
               
               
               Cow position:chr22:4036565-4036757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):139, 48

               
               
               Conread position:259-456
               
               
               Cow position:chr22:13921342-13921533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):165, 50

               
               
               Conread position:261-451
               
               
               Cow position:chr22:15424121-15424314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:261-452
               
               
               Cow position:chr22:2434199-2434394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 154

               
               
               Conread position:261-457
               
               
               Cow position:chr22:16234139-16234340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:263-449
               
               
               Cow position:chr22:33592444-33592256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:263-454
               
               
               Cow position:chr22:35029256-35029460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:265-437
               
               
               Cow position:chr22:1081777-1081954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:266-455
               
               
               Cow position:chr22:10553695-10553496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:268-451
               
               
               Cow position:chr22:17184694-17184506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:268-456
               
               
               Cow position:chr22:11878052-11877859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:289-449
               
               
               Cow position:chr22:29256615-29256780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:291-456
               
               
               Cow position:chr22:43873072-43873242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:293-447
               
               
               Cow position:chr22:25168272-25168118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 103

               
               
               Conread position:3-386
               
               
               Cow position:chr23:6592957-6592591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:4-359
               
               
               Cow position:chr23:36309166-36309510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:4-454
               
               
               Cow position:chr23:5389438-5389887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 160

               
               
               Conread position:6-198
               
               
               Cow position:chr23:11845028-11845224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 144

               
               
               Conread position:6-385
               
               
               Cow position:chr23:5162167-5162545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:6-452
               
               
               Cow position:chr23:6683474-6683930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:7-196
               
               
               Cow position:chr23:7596589-7596385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:7-203
               
               
               Cow position:chr23:20057125-20056913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:8-198
               
               
               Cow position:chr23:25864941-25864745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 159

               
               
               Conread position:8-456
               
               
               Cow position:chr23:20171319-20171771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:12-196
               
               
               Cow position:chr23:10014291-10014485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:12-196
               
               
               Cow position:chr23:10554265-10554062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 198

               
               
               Conread position:12-197
               
               
               Cow position:chr23:14838989-14838793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 188

               
               
               Conread position:12-198
               
               
               Cow position:chr23:33711518-33711710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:12-201
               
               
               Cow position:chr23:24509449-24509653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:12-359
               
               
               Cow position:chr23:15710330-15709982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 197

               
               
               Conread position:12-360
               
               
               Cow position:chr23:2799314-2799672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:12-385
               
               
               Cow position:chr23:1924087-1923722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:12-385
               
               
               Cow position:chr23:26632546-26632920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:12-385
               
               
               Cow position:chr23:27563963-27563590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:12-453
               
               
               Cow position:chr23:20585966-20585514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 203

               
               
               Conread position:13-328
               
               
               Cow position:chr23:7402453-7402760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 200

               
               
               Conread position:14-196
               
               
               Cow position:chr23:33940408-33940209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:14-384
               
               
               Cow position:chr23:14164652-14164280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:15-322
               
               
               Cow position:chr23:18371154-18370846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:16-367
               
               
               Cow position:chr23:4562638-4562983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:20-388
               
               
               Cow position:chr23:6767646-6768025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:21-385
               
               
               Cow position:chr23:16700284-16699926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:26-455
               
               
               Cow position:chr23:40891122-40891552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:29-197
               
               
               Cow position:chr23:27544595-27544776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 173

               
               
               Conread position:76-457
               
               
               Cow position:chr23:23409567-23409925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:80-455
               
               
               Cow position:chr23:21659771-21660144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:94-457
               
               
               Cow position:chr23:24704124-24704493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:95-457
               
               
               Cow position:chr23:35177164-35177512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:110-452
               
               
               Cow position:chr23:26050895-26051225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:212-453
               
               
               Cow position:chr23:35155321-35155561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:212-456
               
               
               Cow position:chr23:21276075-21275829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:223-447
               
               
               Cow position:chr23:11751194-11750953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:230-456
               
               
               Cow position:chr23:40651520-40651282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:256-453
               
               
               Cow position:chr23:22272494-22272290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:259-454
               
               
               Cow position:chr23:19774757-19774955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:259-457
               
               
               Cow position:chr23:7611257-7611450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):139, 44

               
               
               Conread position:261-448
               
               
               Cow position:chr23:29272106-29272292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:265-453
               
               
               Cow position:chr23:20388656-20388460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:266-385
               
               
               Cow position:chr23:3244473-3244353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:295-457
               
               
               Cow position:chr23:33927832-33927999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:299-456
               
               
               Cow position:chr23:24411034-24411196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:309-449
               
               
               Cow position:chr23:30736107-30735967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:309-454
               
               
               Cow position:chr23:18370636-18370491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:328-452
               
               
               Cow position:chr23:41221066-41220943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:3-158
               
               
               Cow position:chr24:24854369-24854535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 151

               
               
               Conread position:3-191
               
               
               Cow position:chr24:44702688-44702894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr24:39258874-39259083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 188

               
               
               Conread position:3-385
               
               
               Cow position:chr24:33098777-33098384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 150

               
               
               Conread position:3-452
               
               
               Cow position:chr24:34396447-34396012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:3-457
               
               
               Cow position:chr24:39350498-39350061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:4-196
               
               
               Cow position:chr24:6508050-6507845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-196
               
               
               Cow position:chr24:17763540-17763347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:6-385
               
               
               Cow position:chr24:43432517-43432877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:7-201
               
               
               Cow position:chr24:24250446-24250653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 192

               
               
               Conread position:8-370
               
               
               Cow position:chr24:11839895-11840261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:12-195
               
               
               Cow position:chr24:18970772-18970587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:12-198
               
               
               Cow position:chr24:18331456-18331644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 179

               
               
               Conread position:12-198
               
               
               Cow position:chr24:18405584-18405398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-200
               
               
               Cow position:chr24:2730850-2730649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):25, 180

               
               
               Conread position:12-206
               
               
               Cow position:chr24:25229337-25229128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:12-211
               
               
               Cow position:chr24:38375005-38375220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:12-362
               
               
               Cow position:chr24:39807878-39808195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:12-385
               
               
               Cow position:chr24:19466213-19465829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:12-385
               
               
               Cow position:chr24:44041290-44040919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:12-388
               
               
               Cow position:chr24:40129845-40130221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:12-404
               
               
               Cow position:chr24:27290597-27290981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:13-198
               
               
               Cow position:chr24:27720031-27719833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:13-421
               
               
               Cow position:chr24:39681576-39681977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):21, 197

               
               
               Conread position:15-198
               
               
               Cow position:chr24:27967803-27967999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 160

               
               
               Conread position:18-201
               
               
               Cow position:chr24:35529649-35529845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:21-452
               
               
               Cow position:chr24:24755184-24755607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:76-437
               
               
               Cow position:chr24:27824259-27824599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):234, 10

               
               
               Conread position:81-437
               
               
               Cow position:chr24:6061599-6061238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:95-455
               
               
               Cow position:chr24:2143563-2143911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):50, 84

               
               
               Conread position:95-457
               
               
               Cow position:chr24:27054225-27054571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:107-452
               
               
               Cow position:chr24:31258508-31258181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 51

               
               
               Conread position:115-438
               
               
               Cow position:chr24:26455677-26455986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:212-446
               
               
               Cow position:chr24:25164954-25165188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:223-456
               
               
               Cow position:chr24:25677948-25678188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:234-365
               
               
               Cow position:chr24:12992978-12993109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:250-400
               
               
               Cow position:chr24:25112150-25112302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:261-416
               
               
               Cow position:chr24:12452749-12452905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:261-453
               
               
               Cow position:chr24:23824457-23824273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:294-455
               
               
               Cow position:chr24:39764865-39765016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:1-375
               
               
               Cow position:chr25:787999-788360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:2-384
               
               
               Cow position:chr25:1837971-1838351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:3-412
               
               
               Cow position:chr25:14791485-14791891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 204

               
               
               Conread position:3-454
               
               
               Cow position:chr25:20076226-20076681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:4-186
               
               
               Cow position:chr25:2110818-2111008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-199
               
               
               Cow position:chr25:9754340-9754145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:4-370
               
               
               Cow position:chr25:36037047-36036683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 211

               
               
               Conread position:5-420
               
               
               Cow position:chr25:18161039-18161430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:6-196
               
               
               Cow position:chr25:21245869-21245661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr25:22297282-22297074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 199

               
               
               Conread position:6-385
               
               
               Cow position:chr25:16866969-16867352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-377
               
               
               Cow position:chr25:16064634-16064995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:8-451
               
               
               Cow position:chr25:40957247-40956807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:12-184
               
               
               Cow position:chr25:18448579-18448771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:12-196
               
               
               Cow position:chr25:12204212-12204412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr25:6891778-6891582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:12-198
               
               
               Cow position:chr25:16001779-16001580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 190

               
               
               Conread position:12-199
               
               
               Cow position:chr25:26700782-26700977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 174

               
               
               Conread position:12-201
               
               
               Cow position:chr25:12239397-12239200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:12-206
               
               
               Cow position:chr25:25961706-25961912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:12-207
               
               
               Cow position:chr25:4522075-4521883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:12-385
               
               
               Cow position:chr25:21895141-21894774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:12-418
               
               
               Cow position:chr25:17658357-17658753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:12-451
               
               
               Cow position:chr25:5407492-5407913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:13-194
               
               
               Cow position:chr25:26238614-26238811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 192

               
               
               Conread position:13-201
               
               
               Cow position:chr25:20496283-20496483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:17-455
               
               
               Cow position:chr25:18265911-18266346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:24-198
               
               
               Cow position:chr25:6256182-6255991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:32-385
               
               
               Cow position:chr25:12840954-12840607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:32-445
               
               
               Cow position:chr25:8576457-8576867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:32-447
               
               
               Cow position:chr25:23410427-23410835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:34-196
               
               
               Cow position:chr25:12081542-12081378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:76-454
               
               
               Cow position:chr25:27535088-27534736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 19

               
               
               Conread position:106-457
               
               
               Cow position:chr25:34379252-34378910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:216-444
               
               
               Cow position:chr25:36501310-36501067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:248-437
               
               
               Cow position:chr25:13560238-13560048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:250-455
               
               
               Cow position:chr25:14075279-14075487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 90

               
               
               Conread position:255-449
               
               
               Cow position:chr25:20428300-20428496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:261-452
               
               
               Cow position:chr25:33205092-33204904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:261-457
               
               
               Cow position:chr25:18448799-18448997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:261-457
               
               
               Cow position:chr25:26240525-26240725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:267-403
               
               
               Cow position:chr25:7380847-7380711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:268-453
               
               
               Cow position:chr25:34970458-34970637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:281-447
               
               
               Cow position:chr25:18228188-18228352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:3-198
               
               
               Cow position:chr26:23926226-23926023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:3-457
               
               
               Cow position:chr26:14924250-14924687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:4-197
               
               
               Cow position:chr26:27594397-27594594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr26:18692188-18692387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 114

               
               
               Conread position:4-201
               
               
               Cow position:chr26:7961389-7961598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 197

               
               
               Conread position:4-201
               
               
               Cow position:chr26:14080469-14080679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:6-153
               
               
               Cow position:chr26:13774249-13774402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr26:10768145-10767948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:6-198
               
               
               Cow position:chr26:20260346-20260543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:6-450
               
               
               Cow position:chr26:2196834-2196393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:12-196
               
               
               Cow position:chr26:9099991-9099802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 156

               
               
               Conread position:12-198
               
               
               Cow position:chr26:9850332-9850136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 184

               
               
               Conread position:12-198
               
               
               Cow position:chr26:9853842-9853646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 184

               
               
               Conread position:12-201
               
               
               Cow position:chr26:6475666-6475463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-457
               
               
               Cow position:chr26:9666646-9666211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:18-386
               
               
               Cow position:chr26:26294421-26294065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:21-450
               
               
               Cow position:chr26:21242874-21243303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:24-457
               
               
               Cow position:chr26:4854310-4854767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:76-447
               
               
               Cow position:chr26:16604124-16604487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:95-453
               
               
               Cow position:chr26:12519877-12520229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:95-454
               
               
               Cow position:chr26:9632509-9632162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):212, 50

               
               
               Conread position:212-457
               
               
               Cow position:chr26:34119076-34118834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:222-386
               
               
               Cow position:chr26:27594582-27594746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 90

               
               
               Conread position:223-456
               
               
               Cow position:chr26:12652264-12652040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:230-445
               
               
               Cow position:chr26:1325725-1325953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 210

               
               
               Conread position:231-455
               
               
               Cow position:chr26:21321540-21321302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:245-454
               
               
               Cow position:chr26:31466672-31466877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:259-386
               
               
               Cow position:chr26:178235-178365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:261-456
               
               
               Cow position:chr26:9102104-9101908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:265-452
               
               
               Cow position:chr26:6470264-6470075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:267-407
               
               
               Cow position:chr26:24453896-24453759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:267-420
               
               
               Cow position:chr26:19768795-19768639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:267-452
               
               
               Cow position:chr26:32865881-32865691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:268-412
               
               
               Cow position:chr26:34060345-34060491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:268-438
               
               
               Cow position:chr26:7961952-7962121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:317-454
               
               
               Cow position:chr26:19649052-19649187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:3-151
               
               
               Cow position:chr27:21578380-21578544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr27:22179575-22179774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:3-198
               
               
               Cow position:chr27:6550673-6550467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:3-198
               
               
               Cow position:chr27:30765254-30765046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:3-201
               
               
               Cow position:chr27:30677121-30676916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:3-206
               
               
               Cow position:chr27:25676455-25676229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 210

               
               
               Conread position:3-455
               
               
               Cow position:chr27:20765743-20766183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:3-457
               
               
               Cow position:chr27:19543687-19544152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 208

               
               
               Conread position:4-198
               
               
               Cow position:chr27:9090580-9090793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 206

               
               
               Conread position:4-198
               
               
               Cow position:chr27:22498774-22498567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 196

               
               
               Conread position:4-198
               
               
               Cow position:chr27:28518504-28518305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr27:795001-794796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:4-385
               
               
               Cow position:chr27:27640771-27641167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:4-455
               
               
               Cow position:chr27:15319671-15319236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:6-455
               
               
               Cow position:chr27:25998922-25998476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:7-201
               
               
               Cow position:chr27:30561130-30560921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 197

               
               
               Conread position:8-201
               
               
               Cow position:chr27:13006049-13005847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:8-206
               
               
               Cow position:chr27:25411302-25411517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 198

               
               
               Conread position:8-369
               
               
               Cow position:chr27:22454562-22454916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 205

               
               
               Conread position:11-197
               
               
               Cow position:chr27:25885737-25885932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:12-197
               
               
               Cow position:chr27:1768423-1768611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:12-197
               
               
               Cow position:chr27:28164199-28164395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 188

               
               
               Conread position:12-237
               
               
               Cow position:chr27:26440846-26441088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:12-394
               
               
               Cow position:chr27:2592753-2592377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 182

               
               
               Conread position:16-197
               
               
               Cow position:chr27:12596964-12596776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:18-396
               
               
               Cow position:chr27:19647738-19648110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:21-384
               
               
               Cow position:chr27:19546301-19546667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:76-198
               
               
               Cow position:chr27:4011811-4011687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:230-405
               
               
               Cow position:chr27:6884037-6883855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:230-445
               
               
               Cow position:chr27:26441046-26441268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:256-455
               
               
               Cow position:chr27:24341877-24341672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:265-452
               
               
               Cow position:chr27:22245590-22245396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:266-444
               
               
               Cow position:chr27:22225632-22225807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 41

               
               
               Conread position:266-457
               
               
               Cow position:chr27:7662984-7662793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:269-422
               
               
               Cow position:chr27:12191518-12191672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:293-446
               
               
               Cow position:chr27:14226760-14226604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:299-453
               
               
               Cow position:chr27:1899642-1899799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:308-435
               
               
               Cow position:chr27:6037091-6036960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:311-456
               
               
               Cow position:chr27:23147610-23147461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 54

               
               
               Conread position:3-143
               
               
               Cow position:chr28:5117893-5118041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-197
               
               
               Cow position:chr28:26614635-26614835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-198
               
               
               Cow position:chr28:26719100-26719302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:3-201
               
               
               Cow position:chr28:4536210-4536411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:3-444
               
               
               Cow position:chr28:23675884-23676313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:4-182
               
               
               Cow position:chr28:10682075-10681886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr28:14218735-14218520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 203

               
               
               Conread position:4-201
               
               
               Cow position:chr28:21873513-21873725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 133

               
               
               Conread position:4-201
               
               
               Cow position:chr28:23621291-23621499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr28:31872004-31871791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:5-206
               
               
               Cow position:chr28:34636421-34636627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:6-171
               
               
               Cow position:chr28:9426597-9426428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr28:3024167-3023964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr28:31972002-31971800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:6-406
               
               
               Cow position:chr28:19026258-19025868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-198
               
               
               Cow position:chr28:20409148-20409342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:8-386
               
               
               Cow position:chr28:16085070-16085444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 205

               
               
               Conread position:10-181
               
               
               Cow position:chr28:16475743-16475927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:10-198
               
               
               Cow position:chr28:2905328-2905527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:12-182
               
               
               Cow position:chr28:11786958-11786775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr28:16253105-16252910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:12-199
               
               
               Cow position:chr28:19222847-19222643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:12-348
               
               
               Cow position:chr28:13371418-13371066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:12-385
               
               
               Cow position:chr28:20124535-20124901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 175

               
               
               Conread position:12-406
               
               
               Cow position:chr28:26743372-26743763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:12-451
               
               
               Cow position:chr28:18934202-18934640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:12-457
               
               
               Cow position:chr28:10589279-10588821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:13-352
               
               
               Cow position:chr28:16686784-16687111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:13-454
               
               
               Cow position:chr28:23007977-23007533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 186

               
               
               Conread position:14-201
               
               
               Cow position:chr28:26784715-26784510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:14-203
               
               
               Cow position:chr28:30978034-30978230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:14-452
               
               
               Cow position:chr28:20963780-20963339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:15-445
               
               
               Cow position:chr28:616156-616569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:15-456
               
               
               Cow position:chr28:3769902-3769472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:317
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:16-138
               
               
               Cow position:chr28:16879514-16879383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:32-198
               
               
               Cow position:chr28:8408511-8408686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:80-455
               
               
               Cow position:chr28:11007014-11007388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:95-385
               
               
               Cow position:chr28:26982895-26982620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):211, 47

               
               
               Conread position:95-456
               
               
               Cow position:chr28:6643429-6643088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):213, 61

               
               
               Conread position:95-456
               
               
               Cow position:chr28:25826023-25825673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:95-457
               
               
               Cow position:chr28:15082078-15081733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:223-396
               
               
               Cow position:chr28:21873710-21873888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:231-455
               
               
               Cow position:chr28:25340230-25340457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:247-386
               
               
               Cow position:chr28:12046934-12046794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-438
               
               
               Cow position:chr28:15677866-15678061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:255-429
               
               
               Cow position:chr28:8335948-8336125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:258-452
               
               
               Cow position:chr28:4274850-4274657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:260-419
               
               
               Cow position:chr28:7805430-7805268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-455
               
               
               Cow position:chr28:9294501-9294301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:261-445
               
               
               Cow position:chr28:5979916-5980098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:263-455
               
               
               Cow position:chr28:31165987-31165791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:265-446
               
               
               Cow position:chr28:7156834-7157013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:265-456
               
               
               Cow position:chr28:14508374-14508175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:266-451
               
               
               Cow position:chr28:32365842-32366024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:269-444
               
               
               Cow position:chr28:12999099-12999274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):115, 38

               
               
               Conread position:288-450
               
               
               Cow position:chr28:34122653-34122495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:296-454
               
               
               Cow position:chr28:34749763-34749926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:307-452
               
               
               Cow position:chr28:13061668-13061818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:309-457
               
               
               Cow position:chr28:17625130-17624978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:3-182
               
               
               Cow position:chr29:21529032-21529216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr29:2522311-2522514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:3-198
               
               
               Cow position:chr29:12784221-12784011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 201

               
               
               Conread position:3-201
               
               
               Cow position:chr29:21924943-21925158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 203

               
               
               Conread position:3-201
               
               
               Cow position:chr29:40337791-40337581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 196

               
               
               Conread position:3-444
               
               
               Cow position:chr29:9511965-9512429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:4-198
               
               
               Cow position:chr29:29056919-29057124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:6-454
               
               
               Cow position:chr29:24952424-24952890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-444
               
               
               Cow position:chr29:37961234-37960804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:10-201
               
               
               Cow position:chr29:24197890-24197697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:11-451
               
               
               Cow position:chr29:18072671-18073119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:11-456
               
               
               Cow position:chr29:18021933-18021496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:12-195
               
               
               Cow position:chr29:35281246-35281439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:12-198
               
               
               Cow position:chr29:3395853-3396051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):21, 189

               
               
               Conread position:12-201
               
               
               Cow position:chr29:34736722-34736520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:12-441
               
               
               Cow position:chr29:4367464-4367894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 195

               
               
               Conread position:12-445
               
               
               Cow position:chr29:24604405-24603959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:12-447
               
               
               Cow position:chr29:12761710-12762132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:12-453
               
               
               Cow position:chr29:15940895-15940455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:12-457
               
               
               Cow position:chr29:13127365-13126941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:12-457
               
               
               Cow position:chr29:35291842-35292292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 178

               
               
               Conread position:13-198
               
               
               Cow position:chr29:32799959-32799763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:13-198
               
               
               Cow position:chr29:34360050-34359861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:13-455
               
               
               Cow position:chr29:11365991-11366418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:14-455
               
               
               Cow position:chr29:356071-356509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:15-201
               
               
               Cow position:chr29:5964664-5964474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:15-410
               
               
               Cow position:chr29:13553878-13554275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 193

               
               
               Conread position:16-207
               
               
               Cow position:chr29:585029-585227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:32-370
               
               
               Cow position:chr29:4520100-4520432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 169

               
               
               Conread position:32-450
               
               
               Cow position:chr29:39023573-39023158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:42-198
               
               
               Cow position:chr29:1395380-1395539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:86-452
               
               
               Cow position:chr29:10153958-10153611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):297, 56

               
               
               Conread position:95-443
               
               
               Cow position:chr29:22895567-22895900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):211, 62

               
               
               Conread position:95-457
               
               
               Cow position:chr29:13634456-13634114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):206, 50

               
               
               Conread position:109-451
               
               
               Cow position:chr29:11005583-11005911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):200, 33

               
               
               Conread position:212-454
               
               
               Cow position:chr29:4691449-4691205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:230-441
               
               
               Cow position:chr29:40337589-40337371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:231-450
               
               
               Cow position:chr29:28979546-28979317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:259-457
               
               
               Cow position:chr29:31651395-31651608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:261-456
               
               
               Cow position:chr29:30350945-30350745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:266-457
               
               
               Cow position:chr29:12625985-12625792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:269-453
               
               
               Cow position:chr29:27688744-27688560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:280-453
               
               
               Cow position:chr29:21012337-21012163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 145

               
               
               Conread position:283-454
               
               
               Cow position:chr29:23742254-23742082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 58

               
               
               Conread position:286-391
               
               
               Cow position:chr29:36435441-36435547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:291-457
               
               
               Cow position:chr29:11677445-11677275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:307-450
               
               
               Cow position:chr29:8794384-8794533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-143
               
               
               Cow position:chr3:3096635-3096481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:3-140
               
               
               Cow position:chr3:19822255-19822108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:3-182
               
               
               Cow position:chr3:54050308-54050112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:3-196
               
               
               Cow position:chr3:13330061-13329857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:3-198
               
               
               Cow position:chr3:56658-56454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:3-198
               
               
               Cow position:chr3:27285936-27286155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 207

               
               
               Conread position:3-198
               
               
               Cow position:chr3:65413564-65413357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 198

               
               
               Conread position:3-198
               
               
               Cow position:chr3:78946128-78945912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 207

               
               
               Conread position:3-198
               
               
               Cow position:chr3:80581382-80581587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 114

               
               
               Conread position:3-201
               
               
               Cow position:chr3:11949642-11949430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:3-201
               
               
               Cow position:chr3:32869860-32870074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:3-411
               
               
               Cow position:chr3:33327418-33327826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:3-455
               
               
               Cow position:chr3:9641275-9641736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 187

               
               
               Conread position:4-196
               
               
               Cow position:chr3:52863471-52863263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:4-196
               
               
               Cow position:chr3:82460895-82461099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:4-198
               
               
               Cow position:chr3:20437933-20437729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:4-198
               
               
               Cow position:chr3:22872340-22872124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr3:70401617-70401824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr3:55190036-55189831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:4-206
               
               
               Cow position:chr3:67044381-67044170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:4-419
               
               
               Cow position:chr3:66708361-66707945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:4-455
               
               
               Cow position:chr3:48629872-48629432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:4-457
               
               
               Cow position:chr3:27532948-27532497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:6-194
               
               
               Cow position:chr3:75711035-75711230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr3:41367267-41367063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr3:59596920-59597106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-206
               
               
               Cow position:chr3:36927412-36927213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:6-417
               
               
               Cow position:chr3:54782296-54781883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:6-453
               
               
               Cow position:chr3:54434690-54435147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:334
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:8-456
               
               
               Cow position:chr3:37186552-37186990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:9-375
               
               
               Cow position:chr3:27546116-27545740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:12-179
               
               
               Cow position:chr3:83369043-83369222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr3:8147942-8147747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 190

               
               
               Conread position:12-196
               
               
               Cow position:chr3:56704816-56704623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:12-197
               
               
               Cow position:chr3:42483621-42483823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 194

               
               
               Conread position:12-197
               
               
               Cow position:chr3:48252618-48252806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:12-198
               
               
               Cow position:chr3:210043-210239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:12-198
               
               
               Cow position:chr3:23876719-23876918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:12-198
               
               
               Cow position:chr3:42177881-42178081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:12-199
               
               
               Cow position:chr3:7678394-7678592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:12-199
               
               
               Cow position:chr3:59001024-59000828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:12-201
               
               
               Cow position:chr3:22170910-22171113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-201
               
               
               Cow position:chr3:26553987-26553788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:12-205
               
               
               Cow position:chr3:19708378-19708174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:12-384
               
               
               Cow position:chr3:55124557-55124195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:12-403
               
               
               Cow position:chr3:1830842-1830469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:12-404
               
               
               Cow position:chr3:53046936-53046555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 185

               
               
               Conread position:12-442
               
               
               Cow position:chr3:52836181-52835731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:12-449
               
               
               Cow position:chr3:28908474-28908041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):27, 184

               
               
               Conread position:12-453
               
               
               Cow position:chr3:16343337-16343770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:12-453
               
               
               Cow position:chr3:45647858-45648283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:12-456
               
               
               Cow position:chr3:26903836-26904281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:12-457
               
               
               Cow position:chr3:64172166-64172605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:13-187
               
               
               Cow position:chr3:42367767-42367585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:13-454
               
               
               Cow position:chr3:5374057-5374489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 190

               
               
               Conread position:14-353
               
               
               Cow position:chr3:66610115-66609787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:15-457
               
               
               Cow position:chr3:73764469-73764032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:16-457
               
               
               Cow position:chr3:15052212-15051769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:316
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:20-198
               
               
               Cow position:chr3:84000341-84000536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 186

               
               
               Conread position:21-196
               
               
               Cow position:chr3:13577453-13577268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:41-453
               
               
               Cow position:chr3:18686668-18687080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:70-444
               
               
               Cow position:chr3:83845694-83846061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:76-456
               
               
               Cow position:chr3:41718184-41718553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:80-416
               
               
               Cow position:chr3:8457464-8457776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:80-447
               
               
               Cow position:chr3:74846929-74846552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:81-369
               
               
               Cow position:chr3:70334902-70334622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:82-453
               
               
               Cow position:chr3:8393741-8394092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:97-456
               
               
               Cow position:chr3:11920210-11919875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):327, 48

               
               
               Conread position:114-457
               
               
               Cow position:chr3:58765239-58764903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:139-454
               
               
               Cow position:chr3:61116995-61116692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:214-450
               
               
               Cow position:chr3:18214219-18213981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:214-451
               
               
               Cow position:chr3:57830165-57829926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:214-456
               
               
               Cow position:chr3:3037005-3036759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:216-369
               
               
               Cow position:chr3:84175900-84175750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:230-457
               
               
               Cow position:chr3:3818712-3818947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:230-457
               
               
               Cow position:chr3:18725722-18725480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:230-457
               
               
               Cow position:chr3:40100791-40100546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:232-445
               
               
               Cow position:chr3:22271515-22271304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):192, 71

               
               
               Conread position:232-452
               
               
               Cow position:chr3:73741941-73741710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:248-451
               
               
               Cow position:chr3:59608454-59608655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:248-453
               
               
               Cow position:chr3:5601215-5601008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 141

               
               
               Conread position:257-453
               
               
               Cow position:chr3:9074386-9074185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:257-457
               
               
               Cow position:chr3:15221558-15221354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:257-457
               
               
               Cow position:chr3:25076207-25076002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:265-451
               
               
               Cow position:chr3:909665-909472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-457
               
               
               Cow position:chr3:37485828-37485636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:266-406
               
               
               Cow position:chr3:48810676-48810536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:266-412
               
               
               Cow position:chr3:15153660-15153803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:268-383
               
               
               Cow position:chr3:11705222-11705338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:268-453
               
               
               Cow position:chr3:38347164-38347340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:269-457
               
               
               Cow position:chr3:24300333-24300530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:269-457
               
               
               Cow position:chr3:57634233-57634429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:280-452
               
               
               Cow position:chr3:6900898-6901074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:280-456
               
               
               Cow position:chr3:36204536-36204708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:283-455
               
               
               Cow position:chr3:31247654-31247823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:300-454
               
               
               Cow position:chr3:62798781-62798627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:1-198
               
               
               Cow position:chr4:2141473-2141684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:2-201
               
               
               Cow position:chr4:23494659-23494866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:2-422
               
               
               Cow position:chr4:242952-243375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:2-449
               
               
               Cow position:chr4:22115332-22115779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:3-139
               
               
               Cow position:chr4:59976573-59976428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:3-182
               
               
               Cow position:chr4:11201544-11201743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr4:36755476-36755671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:3-198
               
               
               Cow position:chr4:43370123-43369913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr4:44612730-44612943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr4:51739976-51739770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:3-198
               
               
               Cow position:chr4:63349747-63349536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:3-201
               
               
               Cow position:chr4:9845651-9845859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:3-201
               
               
               Cow position:chr4:21392077-21391871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 194

               
               
               Conread position:3-361
               
               
               Cow position:chr4:30574183-30574550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:3-376
               
               
               Cow position:chr4:62772208-62771822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 215

               
               
               Conread position:3-453
               
               
               Cow position:chr4:22528660-22528211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 217

               
               
               Conread position:3-456
               
               
               Cow position:chr4:3440133-3440591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):17, 168

               
               
               Conread position:4-205
               
               
               Cow position:chr4:48499578-48499783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:4-385
               
               
               Cow position:chr4:39128257-39128643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 207

               
               
               Conread position:4-394
               
               
               Cow position:chr4:33433528-33433144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:6-198
               
               
               Cow position:chr4:22073577-22073376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr4:29237418-29237219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-385
               
               
               Cow position:chr4:27276809-27276438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-386
               
               
               Cow position:chr4:59785048-59785429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-404
               
               
               Cow position:chr4:23509319-23509718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:8-457
               
               
               Cow position:chr4:37935549-37935103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):5, 196

               
               
               Conread position:12-171
               
               
               Cow position:chr4:7704570-7704410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:12-195
               
               
               Cow position:chr4:49629234-49629417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:12-196
               
               
               Cow position:chr4:22236738-22236543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:12-196
               
               
               Cow position:chr4:52748721-52748521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr4:11901826-11901622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 196

               
               
               Conread position:12-198
               
               
               Cow position:chr4:19561432-19561623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:12-198
               
               
               Cow position:chr4:21064267-21064066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:12-198
               
               
               Cow position:chr4:45662763-45662570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:12-198
               
               
               Cow position:chr4:46060683-46060883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:12-198
               
               
               Cow position:chr4:66548016-66547830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:12-201
               
               
               Cow position:chr4:2609975-2610173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 155

               
               
               Conread position:12-201
               
               
               Cow position:chr4:16339855-16339657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 137

               
               
               Conread position:12-201
               
               
               Cow position:chr4:65919355-65919555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:12-202
               
               
               Cow position:chr4:11090949-11090753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:12-370
               
               
               Cow position:chr4:33395951-33395607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:12-385
               
               
               Cow position:chr4:32725961-32726330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 204

               
               
               Conread position:12-389
               
               
               Cow position:chr4:47348569-47348936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:12-404
               
               
               Cow position:chr4:44782111-44782497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:12-404
               
               
               Cow position:chr4:54190837-54191212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:12-412
               
               
               Cow position:chr4:31136492-31136885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:12-412
               
               
               Cow position:chr4:35981726-35982129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 197

               
               
               Conread position:12-412
               
               
               Cow position:chr4:37915592-37915207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 184

               
               
               Conread position:12-438
               
               
               Cow position:chr4:21365151-21365564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:12-441
               
               
               Cow position:chr4:51122794-51123230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 166

               
               
               Conread position:12-444
               
               
               Cow position:chr4:65842021-65841605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:12-455
               
               
               Cow position:chr4:12560777-12561216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:12-455
               
               
               Cow position:chr4:40823378-40822933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-457
               
               
               Cow position:chr4:961926-961466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 206

               
               
               Conread position:13-196
               
               
               Cow position:chr4:43495640-43495839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 185

               
               
               Conread position:14-198
               
               
               Cow position:chr4:46597122-46597317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 186

               
               
               Conread position:14-201
               
               
               Cow position:chr4:34310716-34310508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 196

               
               
               Conread position:14-454
               
               
               Cow position:chr4:56570544-56570982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 192

               
               
               Conread position:15-201
               
               
               Cow position:chr4:51408225-51408031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:15-213
               
               
               Cow position:chr4:42267002-42266798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:16-198
               
               
               Cow position:chr4:35940270-35940067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:18-369
               
               
               Cow position:chr4:59008626-59008265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 185

               
               
               Conread position:19-385
               
               
               Cow position:chr4:19322335-19321972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):18, 196

               
               
               Conread position:21-333
               
               
               Cow position:chr4:26549209-26549536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 227

               
               
               Conread position:32-198
               
               
               Cow position:chr4:29291281-29291458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 168

               
               
               Conread position:47-198
               
               
               Cow position:chr4:25359392-25359549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:76-198
               
               
               Cow position:chr4:22860894-22860774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:76-453
               
               
               Cow position:chr4:41602660-41603019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:79-442
               
               
               Cow position:chr4:17774537-17774181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:81-386
               
               
               Cow position:chr4:51768934-51769210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:91-453
               
               
               Cow position:chr4:51605776-51605443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):219, 9

               
               
               Conread position:95-456
               
               
               Cow position:chr4:23758639-23758981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:97-457
               
               
               Cow position:chr4:23166741-23167078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:127-455
               
               
               Cow position:chr4:5913482-5913167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:212-386
               
               
               Cow position:chr4:13026240-13026408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:230-453
               
               
               Cow position:chr4:24432929-24433156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:230-457
               
               
               Cow position:chr4:26373725-26373499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:231-421
               
               
               Cow position:chr4:21862927-21862727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:231-456
               
               
               Cow position:chr4:39616919-39617141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:240-457
               
               
               Cow position:chr4:63262248-63262025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 151

               
               
               Conread position:246-383
               
               
               Cow position:chr4:21874766-21874906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:255-405
               
               
               Cow position:chr4:24481696-24481546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:259-454
               
               
               Cow position:chr4:52087907-52088104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):139, 75

               
               
               Conread position:263-446
               
               
               Cow position:chr4:58858185-58858008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:265-447
               
               
               Cow position:chr4:45234888-45234701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-456
               
               
               Cow position:chr4:63472090-63471892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-457
               
               
               Cow position:chr4:21063805-21063607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:266-384
               
               
               Cow position:chr4:20898-21017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:266-404
               
               
               Cow position:chr4:56239874-56239736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:266-413
               
               
               Cow position:chr4:59377895-59378043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:266-432
               
               
               Cow position:chr4:45636152-45636315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 125

               
               
               Conread position:266-457
               
               
               Cow position:chr4:64029103-64029292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:269-386
               
               
               Cow position:chr4:46702669-46702551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:271-386
               
               
               Cow position:chr4:51708056-51708170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:283-454
               
               
               Cow position:chr4:18956655-18956487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:283-457
               
               
               Cow position:chr4:10836179-10836357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:287-453
               
               
               Cow position:chr4:43369622-43369451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:289-453
               
               
               Cow position:chr4:45115770-45115602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:295-455
               
               
               Cow position:chr4:34762319-34762157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:303-457
               
               
               Cow position:chr4:20599957-20600116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:318-457
               
               
               Cow position:chr4:63955107-63954970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:1-197
               
               
               Cow position:chr5:31020354-31020165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:1-319
               
               
               Cow position:chr5:45940847-45940536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:2-198
               
               
               Cow position:chr5:72007093-72006882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:2-199
               
               
               Cow position:chr5:26377908-26377696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:2-213
               
               
               Cow position:chr5:63917651-63917425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 213

               
               
               Conread position:3-182
               
               
               Cow position:chr5:40928213-40928018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:3-191
               
               
               Cow position:chr5:42744557-42744754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-196
               
               
               Cow position:chr5:72903464-72903259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-198
               
               
               Cow position:chr5:16206382-16206183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:3-198
               
               
               Cow position:chr5:29827813-29828021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:3-198
               
               
               Cow position:chr5:52645318-52645107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 202

               
               
               Conread position:3-198
               
               
               Cow position:chr5:65933168-65932956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 203

               
               
               Conread position:3-198
               
               
               Cow position:chr5:73079972-73080172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:3-199
               
               
               Cow position:chr5:71504888-71505098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-201
               
               
               Cow position:chr5:33467280-33467067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 201

               
               
               Conread position:3-201
               
               
               Cow position:chr5:34922073-34921861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-202
               
               
               Cow position:chr5:27103027-27102818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 194

               
               
               Conread position:3-385
               
               
               Cow position:chr5:54350601-54350222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:4-192
               
               
               Cow position:chr5:37377639-37377833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:4-201
               
               
               Cow position:chr5:26046097-26046310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:4-201
               
               
               Cow position:chr5:33265666-33265482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:4-453
               
               
               Cow position:chr5:17027861-17028306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:5-194
               
               
               Cow position:chr5:30253507-30253709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 162

               
               
               Conread position:6-192
               
               
               Cow position:chr5:28224220-28224420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr5:35145117-35145321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr5:55068480-55068678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:6-201
               
               
               Cow position:chr5:29504877-29505084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:6-201
               
               
               Cow position:chr5:65593646-65593849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-202
               
               
               Cow position:chr5:27419958-27419753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 170

               
               
               Conread position:6-202
               
               
               Cow position:chr5:64844352-64844150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-335
               
               
               Cow position:chr5:44583353-44583023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-456
               
               
               Cow position:chr5:6528445-6528898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:7-199
               
               
               Cow position:chr5:9090257-9090047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:7-428
               
               
               Cow position:chr5:43992091-43992508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:10-203
               
               
               Cow position:chr5:25495571-25495372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:11-180
               
               
               Cow position:chr5:13536926-13537106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-452
               
               
               Cow position:chr5:25900095-25899666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:12-170
               
               
               Cow position:chr5:20779610-20779443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-190
               
               
               Cow position:chr5:12709656-12709853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr5:68715603-68715795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:12-196
               
               
               Cow position:chr5:43474617-43474817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr5:7921609-7921428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:12-198
               
               
               Cow position:chr5:32956320-32956124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 187

               
               
               Conread position:12-198
               
               
               Cow position:chr5:34115432-34115622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:12-198
               
               
               Cow position:chr5:36854982-36855177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:12-198
               
               
               Cow position:chr5:47317198-47316999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:12-198
               
               
               Cow position:chr5:58855874-58856076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-200
               
               
               Cow position:chr5:40388096-40387900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:12-200
               
               
               Cow position:chr5:50722820-50723023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 192

               
               
               Conread position:12-201
               
               
               Cow position:chr5:14538879-14538683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 184

               
               
               Conread position:12-201
               
               
               Cow position:chr5:27690289-27690084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:12-202
               
               
               Cow position:chr5:4218647-4218849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:12-336
               
               
               Cow position:chr5:24348881-24349197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:12-339
               
               
               Cow position:chr5:16508866-16509199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:12-380
               
               
               Cow position:chr5:44752540-44752173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 176

               
               
               Conread position:12-384
               
               
               Cow position:chr5:6045056-6045434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 206

               
               
               Conread position:12-385
               
               
               Cow position:chr5:63987677-63987307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):21, 200

               
               
               Conread position:12-412
               
               
               Cow position:chr5:45226054-45225654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:12-453
               
               
               Cow position:chr5:30487018-30487457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-457
               
               
               Cow position:chr5:34442022-34441566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 195

               
               
               Conread position:13-361
               
               
               Cow position:chr5:32697042-32696707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:14-201
               
               
               Cow position:chr5:42795085-42794906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:15-196
               
               
               Cow position:chr5:56820487-56820292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 188

               
               
               Conread position:27-454
               
               
               Cow position:chr5:29756124-29756548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:30-198
               
               
               Cow position:chr5:58320672-58320497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:32-404
               
               
               Cow position:chr5:35969334-35969688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:65-422
               
               
               Cow position:chr5:31923210-31923552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:70-385
               
               
               Cow position:chr5:37808826-37808524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):170, 27

               
               
               Conread position:76-386
               
               
               Cow position:chr5:16214532-16214827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:81-457
               
               
               Cow position:chr5:41604470-41604838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):317, 14

               
               
               Conread position:82-201
               
               
               Cow position:chr5:29844134-29844254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 108

               
               
               Conread position:91-447
               
               
               Cow position:chr5:62638771-62639109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):217, 80

               
               
               Conread position:95-437
               
               
               Cow position:chr5:39874991-39875319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):211, 53

               
               
               Conread position:95-445
               
               
               Cow position:chr5:23529405-23529080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:95-453
               
               
               Cow position:chr5:23366898-23366558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):211, 60

               
               
               Conread position:212-451
               
               
               Cow position:chr5:49945882-49946114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:212-454
               
               
               Cow position:chr5:36487725-36487483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:212-455
               
               
               Cow position:chr5:48178416-48178169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:212-457
               
               
               Cow position:chr5:56153585-56153833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:216-428
               
               
               Cow position:chr5:57101551-57101347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:223-455
               
               
               Cow position:chr5:18695138-18695368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:230-457
               
               
               Cow position:chr5:47681039-47680802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:231-457
               
               
               Cow position:chr5:27502914-27503142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:233-453
               
               
               Cow position:chr5:3442435-3442654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:246-420
               
               
               Cow position:chr5:18553894-18554068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:247-455
               
               
               Cow position:chr5:72006863-72006649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:248-377
               
               
               Cow position:chr5:65679969-65679842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-453
               
               
               Cow position:chr5:55089144-55089352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-455
               
               
               Cow position:chr5:21531102-21530897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:259-374
               
               
               Cow position:chr5:21535099-21534983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:259-455
               
               
               Cow position:chr5:34914540-34914344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:261-365
               
               
               Cow position:chr5:62415947-62415842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:261-450
               
               
               Cow position:chr5:64399027-64399211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:261-452
               
               
               Cow position:chr5:34279588-34279403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):143, 42

               
               
               Conread position:261-457
               
               
               Cow position:chr5:23527617-23527415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:263-457
               
               
               Cow position:chr5:68329972-68329774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:265-453
               
               
               Cow position:chr5:24175391-24175581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:268-423
               
               
               Cow position:chr5:61365553-61365715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:269-450
               
               
               Cow position:chr5:53145730-53145540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 154

               
               
               Conread position:276-454
               
               
               Cow position:chr5:12901136-12900953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:285-455
               
               
               Cow position:chr5:42049723-42049892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 97

               
               
               Conread position:307-455
               
               
               Cow position:chr5:39134199-39134047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:307-457
               
               
               Cow position:chr5:5929520-5929674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:308-457
               
               
               Cow position:chr5:16025406-16025249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:323-453
               
               
               Cow position:chr5:13890545-13890680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:329-457
               
               
               Cow position:chr5:34173747-34173616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1-391
               
               
               Cow position:chr6:8637049-8637440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:3-157
               
               
               Cow position:chr6:14289560-14289394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr6:10635951-10636145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr6:68049210-68049417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:3-196
               
               
               Cow position:chr6:28476958-28477163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-201
               
               
               Cow position:chr6:56902638-56902852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 159

               
               
               Conread position:3-205
               
               
               Cow position:chr6:50422296-50422088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:3-424
               
               
               Cow position:chr6:66532027-66531631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-454
               
               
               Cow position:chr6:45065232-45064791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:3-454
               
               
               Cow position:chr6:54490966-54490502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:3-456
               
               
               Cow position:chr6:31564559-31564106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:317
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:4-384
               
               
               Cow position:chr6:40774573-40774180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 164

               
               
               Conread position:4-452
               
               
               Cow position:chr6:9026294-9026737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-454
               
               
               Cow position:chr6:24583439-24583009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:6-198
               
               
               Cow position:chr6:20231046-20230842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr6:45160512-45160308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 6

               
               
               Conread position:6-199
               
               
               Cow position:chr6:47625180-47624975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 6

               
               
               Conread position:6-457
               
               
               Cow position:chr6:57119149-57118718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:7-418
               
               
               Cow position:chr6:64426969-64427412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:8-200
               
               
               Cow position:chr6:36195993-36196200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 114

               
               
               Conread position:8-456
               
               
               Cow position:chr6:9008832-9008380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 208

               
               
               Conread position:12-145
               
               
               Cow position:chr6:49821308-49821451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:23695782-23695965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:18988001-18988185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:21534843-21535028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:40031978-40032165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-186
               
               
               Cow position:chr6:40264413-40264227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-192
               
               
               Cow position:chr6:4383277-4383468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-197
               
               
               Cow position:chr6:54369115-54368914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-198
               
               
               Cow position:chr6:2012803-2013005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr6:44098869-44099073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 195

               
               
               Conread position:12-201
               
               
               Cow position:chr6:1510397-1510577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:12-201
               
               
               Cow position:chr6:17669094-17669283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:12-206
               
               
               Cow position:chr6:29077513-29077721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:12-445
               
               
               Cow position:chr6:34235649-34235197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 251

               
               
               Conread position:12-457
               
               
               Cow position:chr6:21590501-21590931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:12-457
               
               
               Cow position:chr6:55475034-55475484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:13-196
               
               
               Cow position:chr6:8804742-8804546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:13-197
               
               
               Cow position:chr6:388956-389155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 191

               
               
               Conread position:13-198
               
               
               Cow position:chr6:24004338-24004527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:13-457
               
               
               Cow position:chr6:16625733-16626172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:15-172
               
               
               Cow position:chr6:54140601-54140769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:15-198
               
               
               Cow position:chr6:44078309-44078503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 148

               
               
               Conread position:15-385
               
               
               Cow position:chr6:47339562-47339203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:15-450
               
               
               Cow position:chr6:56376560-56376131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:20-404
               
               
               Cow position:chr6:54864874-54864490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 179

               
               
               Conread position:24-385
               
               
               Cow position:chr6:38641294-38641645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 178

               
               
               Conread position:26-450
               
               
               Cow position:chr6:36652220-36652639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:32-453
               
               
               Cow position:chr6:12652012-12652423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:71-404
               
               
               Cow position:chr6:445174-445495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):235, 24

               
               
               Conread position:72-454
               
               
               Cow position:chr6:51840130-51840511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):233, 23

               
               
               Conread position:80-457
               
               
               Cow position:chr6:65947216-65946875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:95-447
               
               
               Cow position:chr6:38453900-38453563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:96-420
               
               
               Cow position:chr6:58331771-58332076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:96-439
               
               
               Cow position:chr6:32276817-32277152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:127-421
               
               
               Cow position:chr6:51968981-51969259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:214-450
               
               
               Cow position:chr6:51294270-51294504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:216-384
               
               
               Cow position:chr6:60451410-60451579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:223-413
               
               
               Cow position:chr6:29412796-29412606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:230-457
               
               
               Cow position:chr6:28079917-28079689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 161

               
               
               Conread position:246-454
               
               
               Cow position:chr6:37612123-37612331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:248-457
               
               
               Cow position:chr6:28477184-28477396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:259-385
               
               
               Cow position:chr6:21235068-21235196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:261-455
               
               
               Cow position:chr6:10487616-10487802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:263-454
               
               
               Cow position:chr6:26450344-26450543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):124, 45

               
               
               Conread position:265-454
               
               
               Cow position:chr6:41656010-41655811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-457
               
               
               Cow position:chr6:30701478-30701670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:265-457
               
               
               Cow position:chr6:36454564-36454366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:265-457
               
               
               Cow position:chr6:66057804-66058001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:266-382
               
               
               Cow position:chr6:60516658-60516774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:266-453
               
               
               Cow position:chr6:24004569-24004763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-457
               
               
               Cow position:chr6:20196266-20196079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:267-452
               
               
               Cow position:chr6:32412600-32412418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):157, 38

               
               
               Conread position:267-457
               
               
               Cow position:chr6:28083981-28083785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:268-453
               
               
               Cow position:chr6:20754266-20754077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:280-454
               
               
               Cow position:chr6:23986414-23986240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 141

               
               
               Conread position:280-456
               
               
               Cow position:chr6:47772916-47772735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:281-457
               
               
               Cow position:chr6:7707182-7707362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:285-456
               
               
               Cow position:chr6:25224291-25224462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:289-452
               
               
               Cow position:chr6:17349761-17349595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:297-456
               
               
               Cow position:chr6:58765351-58765183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:308-451
               
               
               Cow position:chr6:31225783-31225930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:310-455
               
               
               Cow position:chr6:1732418-1732567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:1-143
               
               
               Cow position:chr7:59844536-59844684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:2-197
               
               
               Cow position:chr7:58841429-58841642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:3-187
               
               
               Cow position:chr7:62553219-62553413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr7:15608187-15608393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 178

               
               
               Conread position:3-196
               
               
               Cow position:chr7:45748056-45747858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:3-197
               
               
               Cow position:chr7:42244920-42244708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:3-198
               
               
               Cow position:chr7:147187-147400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:3-201
               
               
               Cow position:chr7:39930075-39930283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:3-206
               
               
               Cow position:chr7:52383194-52382984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:3-227
               
               
               Cow position:chr7:19616919-19616685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:3-385
               
               
               Cow position:chr7:25867729-25867345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:3-406
               
               
               Cow position:chr7:32914888-32915291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:3-421
               
               
               Cow position:chr7:3256567-3256159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:3-451
               
               
               Cow position:chr7:24767446-24767016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:3-452
               
               
               Cow position:chr7:20177-20634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 209

               
               
               Conread position:3-453
               
               
               Cow position:chr7:21197603-21197160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 177

               
               
               Conread position:3-454
               
               
               Cow position:chr7:45955705-45956150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:4-198
               
               
               Cow position:chr7:21649878-21650091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 204

               
               
               Conread position:4-199
               
               
               Cow position:chr7:19897023-19896829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:4-202
               
               
               Cow position:chr7:43941116-43941316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:4-207
               
               
               Cow position:chr7:17782895-17782682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:4-457
               
               
               Cow position:chr7:24741060-24740611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:4-457
               
               
               Cow position:chr7:36830442-36830882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:5-201
               
               
               Cow position:chr7:34716026-34716239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:5-412
               
               
               Cow position:chr7:16022081-16022473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:6-192
               
               
               Cow position:chr7:29010610-29010412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-199
               
               
               Cow position:chr7:8813145-8812936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-201
               
               
               Cow position:chr7:44049585-44049380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:6-455
               
               
               Cow position:chr7:19399895-19399453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:6-455
               
               
               Cow position:chr7:31315102-31315548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:7-457
               
               
               Cow position:chr7:26911655-26911211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:7-457
               
               
               Cow position:chr7:48020218-48020674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:8-197
               
               
               Cow position:chr7:33697754-33697943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 64

               
               
               Conread position:8-455
               
               
               Cow position:chr7:58170524-58170971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:12-180
               
               
               Cow position:chr7:37718342-37718517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-194
               
               
               Cow position:chr7:13928368-13928169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:12-196
               
               
               Cow position:chr7:205541-205728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:12-196
               
               
               Cow position:chr7:53034526-53034334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:12-198
               
               
               Cow position:chr7:600130-600323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:12-198
               
               
               Cow position:chr7:1558522-1558725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:12-198
               
               
               Cow position:chr7:17756825-17757027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:12-198
               
               
               Cow position:chr7:28090027-28090221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:12-198
               
               
               Cow position:chr7:32824466-32824265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 192

               
               
               Conread position:12-198
               
               
               Cow position:chr7:58614580-58614781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 191

               
               
               Conread position:12-199
               
               
               Cow position:chr7:31881474-31881666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:12-199
               
               
               Cow position:chr7:44596903-44596710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-201
               
               
               Cow position:chr7:7106996-7106794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:12-201
               
               
               Cow position:chr7:23679809-23679600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 197

               
               
               Conread position:12-201
               
               
               Cow position:chr7:24213667-24213875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 196

               
               
               Conread position:12-201
               
               
               Cow position:chr7:37366791-37366975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 61

               
               
               Conread position:12-201
               
               
               Cow position:chr7:68753901-68753696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 193

               
               
               Conread position:12-372
               
               
               Cow position:chr7:3283151-3283501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:12-372
               
               
               Cow position:chr7:3311631-3311981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:12-384
               
               
               Cow position:chr7:61551698-61552074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:12-385
               
               
               Cow position:chr7:25393076-25393454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:12-385
               
               
               Cow position:chr7:45157919-45158272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:12-385
               
               
               Cow position:chr7:48722119-48721751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 198

               
               
               Conread position:12-385
               
               
               Cow position:chr7:53988847-53989205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:12-451
               
               
               Cow position:chr7:26838451-26838896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:12-453
               
               
               Cow position:chr7:27388196-27387750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:12-454
               
               
               Cow position:chr7:36746105-36746550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:12-457
               
               
               Cow position:chr7:57537738-57537289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 154

               
               
               Conread position:13-196
               
               
               Cow position:chr7:19267582-19267382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:13-196
               
               
               Cow position:chr7:45658597-45658401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 189

               
               
               Conread position:13-198
               
               
               Cow position:chr7:42894238-42894434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 187

               
               
               Conread position:13-198
               
               
               Cow position:chr7:64948909-64949101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:13-445
               
               
               Cow position:chr7:53986195-53985784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:13-457
               
               
               Cow position:chr7:20537150-20537604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 191

               
               
               Conread position:14-198
               
               
               Cow position:chr7:39401743-39401948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 196

               
               
               Conread position:14-303
               
               
               Cow position:chr7:20415515-20415216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:15-183
               
               
               Cow position:chr7:48900050-48899866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 173

               
               
               Conread position:15-197
               
               
               Cow position:chr7:52718845-52718647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-412
               
               
               Cow position:chr7:40709898-40710308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):18, 177

               
               
               Conread position:15-450
               
               
               Cow position:chr7:67839130-67839566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:16-198
               
               
               Cow position:chr7:3176158-3175961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:16-205
               
               
               Cow position:chr7:24778321-24778119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:17-196
               
               
               Cow position:chr7:3336758-3336565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 186

               
               
               Conread position:18-456
               
               
               Cow position:chr7:25104157-25104599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:21-198
               
               
               Cow position:chr7:39444806-39444615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 183

               
               
               Conread position:21-386
               
               
               Cow position:chr7:44454473-44454124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:23-385
               
               
               Cow position:chr7:1761516-1761886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:34-198
               
               
               Cow position:chr7:12202106-12201934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 163

               
               
               Conread position:42-201
               
               
               Cow position:chr7:13641699-13641863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:76-456
               
               
               Cow position:chr7:41727799-41728171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:77-437
               
               
               Cow position:chr7:67819986-67820322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:80-456
               
               
               Cow position:chr7:62102466-62102819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:82-457
               
               
               Cow position:chr7:47172833-47172480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:86-457
               
               
               Cow position:chr7:14524355-14524720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):221, 88

               
               
               Conread position:95-445
               
               
               Cow position:chr7:67761262-67761607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:216-385
               
               
               Cow position:chr7:8089152-8089320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:216-385
               
               
               Cow position:chr7:29505104-29505270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:224-454
               
               
               Cow position:chr7:57311601-57311836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 210

               
               
               Conread position:229-451
               
               
               Cow position:chr7:20081079-20080850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:230-422
               
               
               Cow position:chr7:31881660-31881854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 67

               
               
               Conread position:231-457
               
               
               Cow position:chr7:39603320-39603553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:248-421
               
               
               Cow position:chr7:51632916-51633090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:248-457
               
               
               Cow position:chr7:24667401-24667615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-456
               
               
               Cow position:chr7:59245974-59246180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:259-454
               
               
               Cow position:chr7:12424574-12424774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:261-454
               
               
               Cow position:chr7:51086186-51086384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:261-455
               
               
               Cow position:chr7:53005383-53005573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:265-421
               
               
               Cow position:chr7:1350321-1350164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:266-407
               
               
               Cow position:chr7:11015717-11015859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:266-421
               
               
               Cow position:chr7:24460986-24461139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:269-438
               
               
               Cow position:chr7:67111874-67111706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:269-454
               
               
               Cow position:chr7:57577269-57577076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 184

               
               
               Conread position:273-457
               
               
               Cow position:chr7:66179693-66179504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:274-455
               
               
               Cow position:chr7:45748993-45748811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:278-451
               
               
               Cow position:chr7:22802675-22802500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:1-161
               
               
               Cow position:chr8:43986467-43986299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:1-183
               
               
               Cow position:chr8:29765000-29765200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:2-138
               
               
               Cow position:chr8:29947801-29947656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr8:54572391-54572598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:3-198
               
               
               Cow position:chr8:39845378-39845576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 166

               
               
               Conread position:3-201
               
               
               Cow position:chr8:10456216-10456425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:3-201
               
               
               Cow position:chr8:32491303-32491516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:3-201
               
               
               Cow position:chr8:61123533-61123344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:3-202
               
               
               Cow position:chr8:24237502-24237713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 167

               
               
               Conread position:3-457
               
               
               Cow position:chr8:36505115-36505574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:4-194
               
               
               Cow position:chr8:36858352-36858152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-198
               
               
               Cow position:chr8:26600311-26600508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:4-377
               
               
               Cow position:chr8:11606082-11606442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:4-402
               
               
               Cow position:chr8:21827000-21826597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:4-457
               
               
               Cow position:chr8:9131179-9130728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:4-457
               
               
               Cow position:chr8:13809959-13810402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:4-457
               
               
               Cow position:chr8:49600168-49599732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:5-191
               
               
               Cow position:chr8:56824268-56824062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:6-196
               
               
               Cow position:chr8:4940559-4940354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-198
               
               
               Cow position:chr8:31253560-31253769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 6

               
               
               Conread position:6-200
               
               
               Cow position:chr8:42139294-42139087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:6-205
               
               
               Cow position:chr8:33974324-33974521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-453
               
               
               Cow position:chr8:1107442-1106997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:317
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):7, 160

               
               
               Conread position:6-455
               
               
               Cow position:chr8:58520052-58520502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:7-196
               
               
               Cow position:chr8:44437516-44437721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 198

               
               
               Conread position:8-453
               
               
               Cow position:chr8:55304825-55305277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 176

               
               
               Conread position:9-355
               
               
               Cow position:chr8:22755775-22756114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:12-182
               
               
               Cow position:chr8:21224312-21224128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:12-198
               
               
               Cow position:chr8:5450826-5450654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:12-198
               
               
               Cow position:chr8:20836882-20837082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-198
               
               
               Cow position:chr8:21077353-21077544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-199
               
               
               Cow position:chr8:19642225-19642429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:12-201
               
               
               Cow position:chr8:3147783-3147582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:12-201
               
               
               Cow position:chr8:9624520-9624719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:12-201
               
               
               Cow position:chr8:19430086-19429891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:12-201
               
               
               Cow position:chr8:35436859-35436654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 162

               
               
               Conread position:12-333
               
               
               Cow position:chr8:20212752-20212429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:12-385
               
               
               Cow position:chr8:6233143-6232768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:12-405
               
               
               Cow position:chr8:3891671-3891285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:12-411
               
               
               Cow position:chr8:3015226-3015630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 195

               
               
               Conread position:12-444
               
               
               Cow position:chr8:13222087-13221669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:12-445
               
               
               Cow position:chr8:53383160-53383601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:12-452
               
               
               Cow position:chr8:8134753-8134306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):25, 200

               
               
               Conread position:12-454
               
               
               Cow position:chr8:26228713-26229143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:16-201
               
               
               Cow position:chr8:42575451-42575657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:16-389
               
               
               Cow position:chr8:3704381-3704749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:17-386
               
               
               Cow position:chr8:8010664-8011028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:18-182
               
               
               Cow position:chr8:1169507-1169339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:18-196
               
               
               Cow position:chr8:46214306-46214114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:27-197
               
               
               Cow position:chr8:11593842-11594027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:29-201
               
               
               Cow position:chr8:41264082-41264266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:32-432
               
               
               Cow position:chr8:35504459-35504068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 169

               
               
               Conread position:76-370
               
               
               Cow position:chr8:11278287-11277996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:78-457
               
               
               Cow position:chr8:51695537-51695185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):229, 8

               
               
               Conread position:80-445
               
               
               Cow position:chr8:57387761-57388118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:94-452
               
               
               Cow position:chr8:53633379-53633026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 51

               
               
               Conread position:95-452
               
               
               Cow position:chr8:21137414-21137088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:230-432
               
               
               Cow position:chr8:47461821-47462032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 208

               
               
               Conread position:230-446
               
               
               Cow position:chr8:42575649-42575870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:230-455
               
               
               Cow position:chr8:15686442-15686204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:231-454
               
               
               Cow position:chr8:31646055-31645825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:250-435
               
               
               Cow position:chr8:55829359-55829171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:250-455
               
               
               Cow position:chr8:29413879-29414085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:250-457
               
               
               Cow position:chr8:27294716-27294924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 176

               
               
               Conread position:261-452
               
               
               Cow position:chr8:39017704-39017899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:261-453
               
               
               Cow position:chr8:33510623-33510425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 185

               
               
               Conread position:261-455
               
               
               Cow position:chr8:46850364-46850164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:261-456
               
               
               Cow position:chr8:20892332-20892526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 164

               
               
               Conread position:262-455
               
               
               Cow position:chr8:6469166-6468971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:264-457
               
               
               Cow position:chr8:15536995-15536798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:265-452
               
               
               Cow position:chr8:11594040-11594232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:266-388
               
               
               Cow position:chr8:10846243-10846366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-455
               
               
               Cow position:chr8:55348341-55348535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 41

               
               
               Conread position:267-450
               
               
               Cow position:chr8:32827668-32827488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:268-456
               
               
               Cow position:chr8:37709156-37709351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:269-420
               
               
               Cow position:chr8:20832317-20832163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:280-444
               
               
               Cow position:chr8:16971358-16971200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:282-437
               
               
               Cow position:chr8:61216815-61216655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:307-411
               
               
               Cow position:chr8:22653344-22653448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:332-445
               
               
               Cow position:chr8:54195868-54195987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr9:34666705-34666500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 193

               
               
               Conread position:2-187
               
               
               Cow position:chr9:41782189-41781989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:2-193
               
               
               Cow position:chr9:30477506-30477693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:2-196
               
               
               Cow position:chr9:49279747-49279559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:2-198
               
               
               Cow position:chr9:5510020-5509806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:2-198
               
               
               Cow position:chr9:26057156-26057359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:2-198
               
               
               Cow position:chr9:32812642-32812427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 204

               
               
               Conread position:2-203
               
               
               Cow position:chr9:1951974-1952191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:2-385
               
               
               Cow position:chr9:8998651-8998265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:3-182
               
               
               Cow position:chr9:35101162-35100965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr9:3070130-3070338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:3-203
               
               
               Cow position:chr9:49764951-49764734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:3-370
               
               
               Cow position:chr9:36445916-36445551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:3-419
               
               
               Cow position:chr9:38546691-38546299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:3-451
               
               
               Cow position:chr9:8951197-8950743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:318
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:3-456
               
               
               Cow position:chr9:5433926-5433468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:4-187
               
               
               Cow position:chr9:21459863-21460060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 158

               
               
               Conread position:4-206
               
               
               Cow position:chr9:34762561-34762772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:4-450
               
               
               Cow position:chr9:39428520-39428952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:4-456
               
               
               Cow position:chr9:5340924-5340459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:6-184
               
               
               Cow position:chr9:9416117-9416309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-357
               
               
               Cow position:chr9:28726434-28726780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 195

               
               
               Conread position:6-385
               
               
               Cow position:chr9:55084007-55084385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-403
               
               
               Cow position:chr9:17410899-17411293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):63, 6

               
               
               Conread position:6-454
               
               
               Cow position:chr9:41680026-41679587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:316
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:6-455
               
               
               Cow position:chr9:39152397-39152837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:9-425
               
               
               Cow position:chr9:5141362-5140950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:10-452
               
               
               Cow position:chr9:28983468-28983027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 152

               
               
               Conread position:12-187
               
               
               Cow position:chr9:10678486-10678296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 160

               
               
               Conread position:12-191
               
               
               Cow position:chr9:35850183-35849988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-194
               
               
               Cow position:chr9:20038876-20039052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:12-197
               
               
               Cow position:chr9:33093229-33093037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:12-198
               
               
               Cow position:chr9:23028077-23027887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:12-199
               
               
               Cow position:chr9:38961152-38961353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 191

               
               
               Conread position:12-202
               
               
               Cow position:chr9:34468308-34468505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:12-381
               
               
               Cow position:chr9:5319914-5319542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:12-413
               
               
               Cow position:chr9:15950870-15951273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:12-452
               
               
               Cow position:chr9:43871257-43870823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):21, 187

               
               
               Conread position:12-454
               
               
               Cow position:chr9:42498114-42497653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 197

               
               
               Conread position:13-385
               
               
               Cow position:chr9:17310278-17310645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:13-445
               
               
               Cow position:chr9:3169237-3169665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:15-385
               
               
               Cow position:chr9:41283310-41282931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:15-415
               
               
               Cow position:chr9:21888451-21888056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):22, 194

               
               
               Conread position:15-457
               
               
               Cow position:chr9:9823237-9823660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:16-374
               
               
               Cow position:chr9:32625279-32624935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):8, 150

               
               
               Conread position:16-385
               
               
               Cow position:chr9:51566207-51566579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:16-404
               
               
               Cow position:chr9:9443317-9443703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 188

               
               
               Conread position:21-197
               
               
               Cow position:chr9:9491068-9490876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:21-198
               
               
               Cow position:chr9:42998195-42998385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:21-201
               
               
               Cow position:chr9:16745953-16745755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 186

               
               
               Conread position:22-457
               
               
               Cow position:chr9:23043050-23042622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:32-413
               
               
               Cow position:chr9:64007624-64007994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:72-409
               
               
               Cow position:chr9:34106933-34106604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:80-443
               
               
               Cow position:chr9:15684590-15684932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:97-454
               
               
               Cow position:chr9:5209765-5209427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):209, 76

               
               
               Conread position:215-455
               
               
               Cow position:chr9:6851988-6852227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):160, 30

               
               
               Conread position:218-457
               
               
               Cow position:chr9:38289247-38289472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):206, 17

               
               
               Conread position:220-451
               
               
               Cow position:chr9:62330915-62331151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:230-383
               
               
               Cow position:chr9:58204752-58204591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr9:27345513-27345667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:230-454
               
               
               Cow position:chr9:35100968-35100733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:231-437
               
               
               Cow position:chr9:2863516-2863310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 111

               
               
               Conread position:231-451
               
               
               Cow position:chr9:32266310-32266539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:238-386
               
               
               Cow position:chr9:44467271-44467424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:246-457
               
               
               Cow position:chr9:5756929-5757157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:248-454
               
               
               Cow position:chr9:12499066-12498854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:248-456
               
               
               Cow position:chr9:10666972-10667179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:261-457
               
               
               Cow position:chr9:32115560-32115759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):137, 67

               
               
               Conread position:266-411
               
               
               Cow position:chr9:34283989-34283844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:268-451
               
               
               Cow position:chr9:17110802-17110620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:268-451
               
               
               Cow position:chr9:38580889-38580705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:268-454
               
               
               Cow position:chr9:20200327-20200145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 133

               
               
               Conread position:280-415
               
               
               Cow position:chr9:38777043-38777181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:280-452
               
               
               Cow position:chr9:5399158-5398981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:293-457
               
               
               Cow position:chr9:34431829-34431661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:310-453
               
               
               Cow position:chr9:42900888-42900746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:1-191
               
               
               Cow position:chrX:45113389-45113586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:1-198
               
               
               Cow position:chrX:40557915-40557708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:2-198
               
               
               Cow position:chrX:42994374-42994586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 158

               
               
               Conread position:2-199
               
               
               Cow position:chrX:2383251-2383463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:2-455
               
               
               Cow position:chrX:7646020-7646471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:2-457
               
               
               Cow position:chrX:30543520-30543072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:3-187
               
               
               Cow position:chrX:619245-619041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-190
               
               
               Cow position:chrX:34543548-34543751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 200

               
               
               Conread position:3-190
               
               
               Cow position:chrX:35409429-35409624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:3-191
               
               
               Cow position:chrX:23514257-23514048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:3-198
               
               
               Cow position:chrX:23970152-23970349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-201
               
               
               Cow position:chrX:4942988-4942780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 196

               
               
               Conread position:3-201
               
               
               Cow position:chrX:16284186-16283966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 192

               
               
               Conread position:3-201
               
               
               Cow position:chrX:26876120-26875907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:3-201
               
               
               Cow position:chrX:44053019-44053234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 203

               
               
               Conread position:3-202
               
               
               Cow position:chrX:12249566-12249779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:3-202
               
               
               Cow position:chrX:39126101-39126308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:3-375
               
               
               Cow position:chrX:11455291-11454919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:3-412
               
               
               Cow position:chrX:33855472-33855055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 203

               
               
               Conread position:3-456
               
               
               Cow position:chrX:40692977-40692537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:3-457
               
               
               Cow position:chrX:42011041-42011497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:4-197
               
               
               Cow position:chrX:35413394-35413593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:4-350
               
               
               Cow position:chrX:27680167-27680503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:4-450
               
               
               Cow position:chrX:19878832-19879245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):170, 8

               
               
               Conread position:4-453
               
               
               Cow position:chrX:17631038-17630597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:4-457
               
               
               Cow position:chrX:39558584-39558147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:6-182
               
               
               Cow position:chrX:15814863-15815043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:6-373
               
               
               Cow position:chrX:28111272-28111637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-412
               
               
               Cow position:chrX:38094759-38094356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:6-445
               
               
               Cow position:chrX:25337945-25338388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:7-457
               
               
               Cow position:chrX:32309873-32310318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:10-451
               
               
               Cow position:chrX:46073053-46072600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:11-197
               
               
               Cow position:chrX:17725748-17725946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:12-170
               
               
               Cow position:chrX:31443050-31442877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-196
               
               
               Cow position:chrX:15147415-15147216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-197
               
               
               Cow position:chrX:17497867-17498057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:12-198
               
               
               Cow position:chrX:23497892-23497695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-198
               
               
               Cow position:chrX:27516303-27516502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:12-198
               
               
               Cow position:chrX:34441679-34441478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:12-198
               
               
               Cow position:chrX:34454440-34454638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:12-198
               
               
               Cow position:chrX:38967421-38967621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:12-201
               
               
               Cow position:chrX:2648579-2648377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:12-201
               
               
               Cow position:chrX:38006997-38006788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 197

               
               
               Conread position:12-205
               
               
               Cow position:chrX:37489501-37489703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:12-369
               
               
               Cow position:chrX:37910224-37910569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:12-370
               
               
               Cow position:chrX:9416922-9416559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:12-385
               
               
               Cow position:chrX:7695532-7695888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 146

               
               
               Conread position:12-385
               
               
               Cow position:chrX:42247413-42247042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:12-386
               
               
               Cow position:chrX:34565068-34565424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:12-400
               
               
               Cow position:chrX:32743309-32743687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:12-419
               
               
               Cow position:chrX:7806148-7806600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 368

               
               
               Conread position:12-445
               
               
               Cow position:chrX:17541735-17542165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:12-447
               
               
               Cow position:chrX:19930427-19930849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:12-447
               
               
               Cow position:chrX:31260859-31260399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:12-450
               
               
               Cow position:chrX:17964751-17964317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:12-451
               
               
               Cow position:chrX:21664952-21664515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:12-455
               
               
               Cow position:chrX:8925474-8925914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:13-201
               
               
               Cow position:chrX:25232362-25232567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:13-455
               
               
               Cow position:chrX:32431399-32431833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:14-187
               
               
               Cow position:chrX:4123608-4123801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-196
               
               
               Cow position:chrX:35681118-35681312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 187

               
               
               Conread position:15-172
               
               
               Cow position:chrX:4865025-4865192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:15-196
               
               
               Cow position:chrX:41743687-41743883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 189

               
               
               Conread position:15-385
               
               
               Cow position:chrX:34401771-34402146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 191

               
               
               Conread position:19-196
               
               
               Cow position:chrX:1503117-1503307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:21-412
               
               
               Cow position:chrX:29602053-29601661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 188

               
               
               Conread position:24-454
               
               
               Cow position:chrX:29120841-29121254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:32-198
               
               
               Cow position:chrX:6234656-6234479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 164

               
               
               Conread position:61-201
               
               
               Cow position:chrX:31273079-31273221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 130

               
               
               Conread position:73-455
               
               
               Cow position:chrX:39415518-39415156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:80-457
               
               
               Cow position:chrX:10959542-10959180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:82-385
               
               
               Cow position:chrX:19273867-19273567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:95-198
               
               
               Cow position:chrX:24149510-24149614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:95-356
               
               
               Cow position:chrX:21566271-21566518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:209-394
               
               
               Cow position:chrX:23562602-23562780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:235-454
               
               
               Cow position:chrX:46700862-46700641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:247-455
               
               
               Cow position:chrX:27276696-27276911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:248-457
               
               
               Cow position:chrX:41733204-41732987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:261-433
               
               
               Cow position:chrX:39126341-39126515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:261-437
               
               
               Cow position:chrX:29408007-29407828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:262-443
               
               
               Cow position:chrX:29761668-29761481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:262-451
               
               
               Cow position:chrX:12304577-12304770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:262-451
               
               
               Cow position:chrX:15305283-15305086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:263-457
               
               
               Cow position:chrX:41123079-41123281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:265-453
               
               
               Cow position:chrX:43426314-43426502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:265-457
               
               
               Cow position:chrX:20801788-20801972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:266-385
               
               
               Cow position:chrX:43730203-43730084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:266-457
               
               
               Cow position:chrX:24054691-24054897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:274-457
               
               
               Cow position:chrX:28835734-28835543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:280-454
               
               
               Cow position:chrX:39832450-39832625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:280-457
               
               
               Cow position:chrX:6676860-6677042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:307-447
               
               
               Cow position:chrX:1727909-1727765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 0
Conread position:	1-457
Cow position:	chr1:93110884-93110418 (view UCSC Genome Browser custom track)
Alignm length:	487
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	36, 15
Conread position:	2-182
Cow position:	chr1:88652371-88652568 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	146
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	12, 0
Conread position:	2-198
Cow position:	chr1:76470399-76470608 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	153
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	12, 85
Conread position:	2-332
Cow position:	chr1:7609385-7609686 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	231
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	160, 11
Conread position:	2-457
Cow position:	chr1:91066408-91065944 (view UCSC Genome Browser custom track)
Alignm length:	487
Alignm identity:	335
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	12, 199
Conread position:	3-166
Cow position:	chr1:12678270-12678439 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	123
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	11, 0
Conread position:	3-196
Cow position:	chr1:31348167-31347964 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	152
Alignm E-value:	6e-25
Alignm gaps (pig, cow):	11, 113
Conread position:	3-198
Cow position:	chr1:3137675-3137882 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	152
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	34, 52
Conread position:	3-200
Cow position:	chr1:33811675-33811884 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	150
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	11, 104
Conread position:	3-201
Cow position:	chr1:68818055-68817843 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	153
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	11, 196
Conread position:	3-206
Cow position:	chr1:57264245-57264036 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	160
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	11, 104
Conread position:	3-405
Cow position:	chr1:74084448-74084054 (view UCSC Genome Browser custom track)
Alignm length:	417
Alignm identity:	275
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	11, 35
Conread position:	3-412
Cow position:	chr1:6941207-6941611 (view UCSC Genome Browser custom track)
Alignm length:	428
Alignm identity:	286
Alignm E-value:	3e-29
Alignm gaps (pig, cow):	11, 151
Conread position:	3-444
Cow position:	chr1:70534193-70533757 (view UCSC Genome Browser custom track)
Alignm length:	462
Alignm identity:	321
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	11, 170
Conread position:	3-445
Cow position:	chr1:12871266-12870809 (view UCSC Genome Browser custom track)
Alignm length:	470
Alignm identity:	308
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	11, 200
Conread position:	4-153
Cow position:	chr1:3076649-3076490 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	120
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	10, 0
Conread position:	4-154
Cow position:	chr1:15028430-15028588 (view UCSC Genome Browser custom track)
Alignm length:	161
Alignm identity:	123
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	60, 12
Conread position:	4-191
Cow position:	chr1:25856433-25856627 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	146
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	29, 114
Conread position:	4-194
Cow position:	chr1:12596157-12595955 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	150
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	33, 8
Conread position:	4-196
Cow position:	chr1:31414215-31414010 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	152
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	29, 196